Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007905.1 Hibiscus syriacus cultivar Beakdansim tig00110299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2946335
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 14
Found at i:720871 original size:7 final size:7
Alignment explanation
Indices: 720806--720923 Score: 53
Period size: 7 Copynumber: 15.7 Consensus size: 7
720796 AAATCAAAAC
*
720806 AAAGAGA
1 AAAGAAA
720813 AAAGAAA
1 AAAGAAA
720820 CAAAGAAA
1 -AAAGAAA
720828 AACA-AAGA
1 AA-AGAA-A
720836 GCAAAGAGAA
1 --AAAGA-AA
720846 AAAGTAAA
1 AAAG-AAA
720854 GAAAG-AA
1 -AAAGAAA
720861 AAAGAAA
1 AAAGAAA
720868 AAAGAAAA
1 AAAG-AAA
*
720876 AAAGCAA
1 AAAGAAA
*
720883 AGAGAAA
1 AAAGAAA
*
720890 AAATCAAA
1 AAA-GAAA
*
720898 TAA-AAA
1 AAAGAAA
* *
720904 TAACAAA
1 AAAGAAA
720911 AGAAGAAA
1 A-AAGAAA
720919 AAAGA
1 AAAGA
720924 TAAGAAGAGC
Statistics
Matches: 88, Mismatches: 9, Indels: 28
0.70 0.07 0.22
Matches are distributed among these distances:
6 10 0.11
7 34 0.39
8 33 0.38
9 6 0.07
10 4 0.05
11 1 0.01
ACGTcount: A:0.75, C:0.05, G:0.16, T:0.03
Consensus pattern (7 bp):
AAAGAAA
Found at i:720920 original size:43 final size:43
Alignment explanation
Indices: 720817--720922 Score: 110
Period size: 43 Copynumber: 2.4 Consensus size: 43
720807 AAGAGAAAAG
* *
720817 AAAC-AAAGAAAAACAAAGAGCAAAGAGAAAAAGTAAAGAAAGAA
1 AAACAAAAGAAGAA-AAA-AGCAAAGAGAAAAAATAAAGAAAGAA
* *
720861 AAAGAAAA-AAGAAAAAAAGCAAAGAGAAAAAATCAAATAAA-AA
1 AAACAAAAGAAG-AAAAAAGCAAAGAGAAAAAAT-AAAGAAAGAA
*
720904 TAACAAAAGAAGAAAAAAG
1 AAACAAAAGAAGAAAAAAG
720923 ATAAGAAGAG
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
43 30 0.58
44 17 0.33
45 5 0.10
ACGTcount: A:0.75, C:0.06, G:0.15, T:0.04
Consensus pattern (43 bp):
AAACAAAAGAAGAAAAAAGCAAAGAGAAAAAATAAAGAAAGAA
Found at i:721993 original size:33 final size:33
Alignment explanation
Indices: 721949--722017 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
721939 AGAATCAGTG
*
721949 TTGAAGTAATCAACATCGAATATTGGGGCATCT
1 TTGAAGCAATCAACATCGAATATTGGGGCATCT
*
721982 TTGAAGCAATCAACATCGAATGTTGGGGCATCT
1 TTGAAGCAATCAACATCGAATATTGGGGCATCT
722015 TTG
1 TTG
722018 GGGATTCAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (33 bp):
TTGAAGCAATCAACATCGAATATTGGGGCATCT
Found at i:722222 original size:63 final size:63
Alignment explanation
Indices: 722101--722222 Score: 140
Period size: 63 Copynumber: 1.9 Consensus size: 63
722091 ATCAGTATCC
* *
722101 TTTGAGTTGTTTTTCTAGAAACAAATTTTTGTCTCTCTTGAGACAATTTCTTTAGAAAAAATA
1 TTTGAGTTGTTTTTCTAGAAACAAAATTTTGTCTCTCTTGAGACAATTTCCTTAGAAAAAATA
* * * * * *
722164 TTTGAGTT-TTTTTATTTGAAATAAAATTTTGTCTCAT-TTGAGATAGTTTCCTTCGAAAA
1 TTTGAGTTGTTTTT-CTAGAAACAAAATTTTGTCTC-TCTTGAGACAATTTCCTTAGAAAA
722223 CAAATTTTGT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
62 5 0.10
63 43 0.88
64 1 0.02
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47
Consensus pattern (63 bp):
TTTGAGTTGTTTTTCTAGAAACAAAATTTTGTCTCTCTTGAGACAATTTCCTTAGAAAAAATA
Found at i:722376 original size:36 final size:36
Alignment explanation
Indices: 722314--722419 Score: 115
Period size: 36 Copynumber: 3.0 Consensus size: 36
722304 TTGAGATCGT
** * *
722314 TTTCTC-AAAAACAAACATTCTTTCGCTTGAGACAA
1 TTTCTCTAAAAACAAATTTTATCTCGCTTGAGACAA
*
722349 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
1 TTTCTCTAAAAACAAATTTTATCTCGCTTGAGACAA
* * * * *
722385 TTTCTATCAAAGCAAATTTCACCTCGCTTGAGACA
1 TTTCTCTAAAAACAAATTTTATCTCGCTTGAGACA
722420 TTTTTTTTCT
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
35 6 0.10
36 54 0.90
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33
Consensus pattern (36 bp):
TTTCTCTAAAAACAAATTTTATCTCGCTTGAGACAA
Found at i:722692 original size:29 final size:29
Alignment explanation
Indices: 722647--722808 Score: 102
Period size: 29 Copynumber: 5.5 Consensus size: 29
722637 TATTGAGATA
*
722647 GTTTCTTTTG-AAGAAAAATCTTTGAGTC
1 GTTTCTTTTGAAACAAAAATCTTTGAGTC
* * *
722675 GTTTCTTTTGAAACAAAAAACTTCGAGTTT
1 GTTTCTTTTGAAACAAAAATCTTTGAG-TC
* ** *
722705 GCTTCTTTTGAAACAAAGTTTTGTCTCTTGAGAC
1 GTTTCTTTTGAAACAAA----AATCT-TTGAGTC
*
722739 AGTTT-TTCATG----AAAAATCTTTGAGTC
1 -GTTTCTT-TTGAAACAAAAATCTTTGAGTC
* * *
722765 ATTTTTTTTGAAACAAAAATCTTTTAGTC
1 GTTTCTTTTGAAACAAAAATCTTTGAGTC
722794 GTTTCTTTTGAAACA
1 GTTTCTTTTGAAACA
722809 CCATCATCTT
Statistics
Matches: 99, Mismatches: 21, Indels: 27
0.67 0.14 0.18
Matches are distributed among these distances:
25 5 0.05
26 8 0.08
27 3 0.03
28 10 0.10
29 40 0.40
30 17 0.17
31 3 0.03
34 4 0.04
35 9 0.09
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (29 bp):
GTTTCTTTTGAAACAAAAATCTTTGAGTC
Found at i:724000 original size:45 final size:45
Alignment explanation
Indices: 723900--724002 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
723890 TGCATATGAG
* *
723900 GTGTATCGATGCACTCCTTTAAAATAAAAACATCGAATGTCATTA
1 GTGTATCGATGCACCCCTTTAAAATAAAAACATCGAATGACATTA
* *
723945 GTGTATCGATGCACCCCTTTAAAATACAAACATCGAATGAGATTTA
1 GTGTATCGATGCACCCCTTTAAAATAAAAACATCGAATGACA-TTA
*
723991 -TGTACCGATGCA
1 GTGTATCGATGCA
724003 TAGATTATGC
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
45 49 0.94
46 3 0.06
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (45 bp):
GTGTATCGATGCACCCCTTTAAAATAAAAACATCGAATGACATTA
Found at i:724618 original size:18 final size:18
Alignment explanation
Indices: 724595--724668 Score: 85
Period size: 18 Copynumber: 4.0 Consensus size: 18
724585 GAGGGATTAT
*
724595 TAGTGGTCCTTCGGGACA
1 TAGTGGTTCTTCGGGACA
*
724613 TAGTGGTTCTTCGGAACAA
1 TAGTGGTTCTTCGGGAC-A
*
724632 TCAGTGGTTCTTCAGGACA
1 T-AGTGGTTCTTCGGGACA
**
724651 TAGTGGTAATTCGGGACA
1 TAGTGGTTCTTCGGGACA
724669 AATATTCAGT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
18 29 0.62
19 4 0.09
20 14 0.30
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (18 bp):
TAGTGGTTCTTCGGGACA
Found at i:724664 original size:38 final size:38
Alignment explanation
Indices: 724596--724669 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
724586 AGGGATTATT
* **
724596 AGTGGTCCTTCGGGACATAGTGGTTCTTCGGAACAATC
1 AGTGGTCCTTCAGGACATAGTGGTAATTCGGAACAATC
* *
724634 AGTGGTTCTTCAGGACATAGTGGTAATTCGGGACAA
1 AGTGGTCCTTCAGGACATAGTGGTAATTCGGAACAA
724670 ATATTCAGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (38 bp):
AGTGGTCCTTCAGGACATAGTGGTAATTCGGAACAATC
Found at i:726044 original size:20 final size:20
Alignment explanation
Indices: 726009--726048 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
725999 TAAATAAATA
*
726009 TTAAAACATGATTAAAATAAG
1 TTAAAACATAATT-AAATAAG
726030 TTAAAA-ATAATTAAATAAG
1 TTAAAACATAATTAAATAAG
726049 ATTTTAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 5 0.28
21 6 0.33
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (20 bp):
TTAAAACATAATTAAATAAG
Found at i:727379 original size:3 final size:3
Alignment explanation
Indices: 727371--727415 Score: 65
Period size: 3 Copynumber: 15.0 Consensus size: 3
727361 AGCCTGTTTG
*
727371 TAA TAA TAA TAA TAA TAA TAA TAAA TAA -AA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
727416 ATAAATAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:727403 original size:24 final size:25
Alignment explanation
Indices: 727375--727424 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
727365 TGTTTGTAAT
*
727375 AATAATAATAATAAT-AATAAATAA
1 AATAATAATAACAATAAATAAATAA
727399 AATAATAATAACAATAAATAAATAA
1 AATAATAATAACAATAAATAAATAA
727424 A
1 A
727425 TAAAATGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (25 bp):
AATAATAATAACAATAAATAAATAA
Found at i:727427 original size:21 final size:21
Alignment explanation
Indices: 727372--727420 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
727362 GCCTGTTTGT
*
727372 AATAATAATAATAATAATAATA
1 AATAA-AATAATAATAACAATA
727394 AATAAAATAATAATAACAATA
1 AATAAAATAATAATAACAATA
727415 AATAAA
1 AATAAA
727421 TAAATAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AATAAAATAATAATAACAATA
Found at i:727956 original size:124 final size:125
Alignment explanation
Indices: 727647--727961 Score: 430
Period size: 124 Copynumber: 2.6 Consensus size: 125
727637 GTAATCTAGC
*
727647 AAAGGTTGAACAAGCTATTCTCATTGTGAA---CTTCTTC-TTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * *
727708 GTGAAC-TCCTTCTGGAAATGCTGATGATGATATATCTCCTTCTGTGATAAGTCATGCAA
66 ATGAACTTCCTTCTGGAAAAGCTGATGATGATATATCTCCTTCTATGATAAGTCATGCAA
* * *
727767 AAA-GTCGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAAATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * *
727831 ATGAACTTTC-TCTGGAAAAGTTGATGCTGATATATCTCCTTCTATGATAGAGTCATG-AA
66 ATGAACTTCCTTCTGGAAAAGCTGATGATGATATATCTCCTTCTATGATA-AGTCATGCAA
** * * *
727890 AAAGGTTGAACAAAATTTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTATTCTTATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
727955 ATGAACT
66 ATGAACT
727962 CTACCTGGCA
Statistics
Matches: 171, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
119 23 0.13
120 3 0.02
122 7 0.04
123 68 0.40
124 70 0.41
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (125 bp):
AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTCCTTCTGGAAAAGCTGATGATGATATATCTCCTTCTATGATAAGTCATGCAA
Found at i:727979 original size:124 final size:122
Alignment explanation
Indices: 727647--728524 Score: 423
Period size: 113 Copynumber: 7.6 Consensus size: 122
727637 GTAATCTAGC
*
727647 AAAGGTTGAACAAGCTATTCTCATTGTGAA---CTTCTTC-TTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * *
727708 GTGAACTCCTTCTGGAA-ATGCTGATGATGATATATCTCCTTCTGTGATAAGTCATGCAA
66 ATGAACT-CTCCTGGAATAT--TGATGATGATATATCTCCTTCTATGATAAGTCATGCAA
* * *
727767 AAA-GTCGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAAATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * *
727831 ATGAACTTTCTCTGGAAAAGTTGATGCTGATATATCTCCTTCTATGATAGAGTCATG-AA
66 ATGAACTCTC-CTGGAATA-TTGATGATGATATATCTCCTTCTATGATA-AGTCATGCAA
** * * *
727890 AAAGGTTGAACAAAATTTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTATTCTTATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * * **
727955 ATGAACTCTACCTGGCA-A-T-AT--TG----A--TCCATCAAATGATGAATTCAAAC-A
66 ATGAACTCT-CCTGGAATATTGATGATGATATATCTCCTTC-TATGAT-AAGTCATGCAA
** *
728003 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTC--C-TTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * * * * *
728065 ATGAACTTTCTCTGG--TA---CTGCTG----ATC-CAC--CGAGTGATGAATTTAAGCAA
66 ATGAACTCTC-CTGGAATATTGATGATGATATATCTC-CTTCTA-TGAT-AAGTCATGCAA
* * *
728114 AAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * * *
728178 ATGAACTCTAACTGG--TA---A--A-G-T-TGATC-CAC--CGAGTGATGAATTTAAGCAA
66 ATGAACTCT-CCTGGAATATTGATGATGATAT-ATCTC-CTTCTA-TGAT-AAGTCATGCAA
* * *
728227 AAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * * *
728291 ATGAACTCTAACTGG--TA---A--A-G-T-TGATC-CAC--CGAGTGATGAATTTAAGCAA
66 ATGAACTCT-CCTGGAATATTGATGATGATAT-ATCTC-CTTCTA-TGAT-AAGTCATGCAA
* * * * * *
728340 AAA-GTTGAAAAAGTTCTTCTCATTATGAACTTCTTTTTC-CTCTTCAGATAAGTTCTTCTCATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * * ** * *
728403 ATGAACTCGACCTGGAA-A---A-G-T--T-GATC-CATTGAATGATGAATTCAAT-CGA
66 ATGAACTC-TCCTGGAATATTGATGATGATATATCTCCTTCTATGAT-AAGTC-ATGCAA
* * *
728452 AAA-GTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
728516 ATGAACTCT
66 ATGAACTCT
728525 AACTGGTAAT
Statistics
Matches: 664, Mismatches: 56, Indels: 84
0.83 0.07 0.10
Matches are distributed among these distances:
108 1 0.00
109 3 0.00
110 83 0.12
111 6 0.01
112 92 0.14
113 294 0.44
114 2 0.00
118 2 0.00
119 23 0.03
120 5 0.01
121 1 0.00
122 8 0.01
123 67 0.10
124 75 0.11
125 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (122 bp):
AAAGGTTGAACAAGCTATTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
ATGAACTCTCCTGGAATATTGATGATGATATATCTCCTTCTATGATAAGTCATGCAA
Found at i:728203 original size:113 final size:113
Alignment explanation
Indices: 727888--728630 Score: 1017
Period size: 113 Copynumber: 6.7 Consensus size: 113
727878 TAGAGTCATG
* * * *
727888 AAAAAGGTTGAACAAAATT-TTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTATTCTT
1 AAAAA-GTTGAAC-AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * * *
727952 ATTATGAACTCTACCTGGCAATA-TTGATCCATCAAATGATGAATTCAAAC
64 ATTATGAACTCTAACTGGTAA-AGTTGATCCACCGAATGATGAATTCAAGC
* *
728002 AAAAGGTTGAACAAATTCTTCTCATTATGAA---CTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* ** ** * * *
728064 TATGAACTTTCTCTGGTACTGCTGATCCACCGAGTGATGAATTTAAGC
66 TATGAACTCTAACTGGTAAAGTTGATCCACCGAATGATGAATTCAAGC
728112 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
728177 TATGAACTCTAACTGGTAAAGTTGATCCACCGAGTGATGAATTTAAGC
66 TATGAACTCTAACTGGTAAAGTTGATCCACCGAATGATGAATTCAAGC
728225 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
728290 TATGAACTCTAACTGGTAAAGTTGATCCACCGAGTGATGAATTTAAGC
66 TATGAACTCTAACTGGTAAAGTTGATCCACCGAATGATGAATTCAAGC
* * *
728338 AAAAAGTTGAAAAAGTTCTTCTCATTATGAACTTCTTTTTCC-TCTTCAGATAAGTTCTTCTCAT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * ** *
728402 TATGAACTCGACCTGGAAAAGTTGATCCATTGAATGATGAATTCAATC
66 TATGAACTCTAACTGGTAAAGTTGATCCACCGAATGATGAATTCAAGC
* * *
728450 GAAAAGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCTTTCTTCAGATGAGTTCTTCTCAT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
728515 TATGAACTCTAACTGGTAATGTTGATCCATCAAATGATGAATTCAAGC
66 TATGAACTCTAACTGGTAAAGTTGATCCACCGAATGATGAATTCAAGC
*
728563 GAAAAGTTGAACAAGTTCTTCTCATTATGAA------CTT-CTTCTTCAGATGAGTTCTTCTCAT
1 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
728621 TATGAACTCT
66 TATGAACTCT
728631 TCCAGAAATG
Statistics
Matches: 574, Mismatches: 49, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
106 33 0.06
107 3 0.01
110 92 0.16
112 103 0.18
113 339 0.59
114 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (113 bp):
AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTCTAACTGGTAAAGTTGATCCACCGAATGATGAATTCAAGC
Found at i:728508 original size:225 final size:223
Alignment explanation
Indices: 727888--728658 Score: 1051
Period size: 225 Copynumber: 3.5 Consensus size: 223
727878 TAGAGTCATG
* * * *
727888 AAAAAGGTTGAACAAAATT-TTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTATTCTT
1 AAAAA-GTTGAA-AAAGTTCTTCTCATTATGAACTTCTTCTTC-CTCTTCAGATGAGTTCTTCTC
* *
727952 ATTATGAACTCTACCTGGCAATA-TTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAA
63 ATTATGAACTCTACCTGG-AAAAGTTGATCCATCGAATGATGAATTCAAACAAAA-GTTGAACAA
* * **
728016 ATTCTTCTCATTATGAAC--TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
126 GTTCTTCTCATTATGAACTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTG
* *
728079 GTACTGCTGATCCACCGAGTGATGAATTTAAGC
191 GTAATGTTGATCCACCGAGTGATGAATTTAAGC
*
728112 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAAGTTGAAAAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCAT
* * * * * *
728177 TATGAACTCTAACTGGTAAAGTTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAGTT
65 TATGAACTCTACCTGGAAAAGTTGATCCATCGAATGATGAATTCAAAC-AAAAGTTGAACAAGTT
728242 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGT
129 CTTCTCATTATGAACTT-TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGT
*
728307 AAAGTTGATCCACCGAGTGATGAATTTAAGC
193 AATGTTGATCCACCGAGTGATGAATTTAAGC
* *
728338 AAAAAGTTGAAAAAGTTCTTCTCATTATGAACTTCTTTTTCCTCTTCAGATAAGTTCTTCTCATT
1 AAAAAGTTGAAAAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATT
* * *
728403 ATGAACTCGACCTGGAAAAGTTGATCCATTGAATGATGAATTCAATCGAAAAGTTGAACAAGTTC
66 ATGAACTCTACCTGGAAAAGTTGATCCATCGAATGATGAATTCAAAC-AAAAGTTGAACAAGTTC
*
728468 TTCTCATTATGAACTTTTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGTA
130 TTCTCATTATGAAC-TTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGTA
* * * *
728533 ATGTTGATCCATCAAATGATGAATTCAAGC
194 ATGTTGATCCACCGAGTGATGAATTTAAGC
* *
728563 GAAAAGTTGAACAAGTTCTTCTCATTATGAA---CTTC-T--TCTTCAGATGAGTTCTTCTCATT
1 AAAAAGTTGAAAAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATT
* * * *
728622 ATGAACTCTTCC-AGAAATGTTGATCCATTGAATGATG
66 ATGAACTCTACCTGGAAAAGTTGATCCATCGAATGATG
728659 GATTTGAACT
Statistics
Matches: 493, Mismatches: 46, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
218 23 0.05
219 32 0.06
221 1 0.00
222 9 0.02
223 112 0.23
224 9 0.02
225 193 0.39
226 114 0.23
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (223 bp):
AAAAAGTTGAAAAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATT
ATGAACTCTACCTGGAAAAGTTGATCCATCGAATGATGAATTCAAACAAAAGTTGAACAAGTTCT
TCTCATTATGAACTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGTAAT
GTTGATCCACCGAGTGATGAATTTAAGC
Found at i:728512 original size:338 final size:336
Alignment explanation
Indices: 727763--728630 Score: 1044
Period size: 338 Copynumber: 2.6 Consensus size: 336
727753 GATAAGTCAT
* * * *
727763 GCAAAAAGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAAATGAGTTCTTCTC
1 GCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* ** * * ** * *
727828 ATTATGAACTTTCTCTGGAAAAGTTGATGCTGATATATCTCCTTCTATGAT-AGAGTCATG-AAA
66 ATTATGAACTCTAACTGGTAAAGTTGAT-C--------CACC--AAATGATGA-ATTCAAGCAAA
* * * *
727891 AAGGTTGAACAAAATT-TTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTATTCTTATT
119 AA-GTTGAAC-AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
727955 ATGAACTCTACCTGGCAATATTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTC
182 ATGAACTCTAACTGGCAATATTGATCCACCAAATGATGAATTCAAACAAAAAGTTGAACAAATTC
* ** * **
728020 TTCTCATTATGAACTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGTACTG
247 TTCTCATTATGAACTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTGACTCTGGAAAAG
* *
728085 CTGATCCACCGAGTGATGAATTTAA
312 CTGATCCACCGAATGATGAATTCAA
728110 GCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
728175 ATTATGAACTCTAACTGGTAAAGTTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAG
66 ATTATGAACTCTAACTGGTAAAGTTGATCCACCAAATGATGAATTCAAGCAAAAAGTTGAACAAG
728240 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTG
131 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTG
* * * * *
728305 GTAA-AGTTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAA-AAAGTTCTTCTCATTATGA
196 GCAATA-TTGATCCACCAAATGATGAATTCAAACAAAAAGTTGAACAAA-TTCTTCTCATTATGA
*
728368 ACTTCTTTTTCC-TCTTCAGATAAGTTCTTCTCATTATGAACTCGAC-CTGGAAAAGTTGATCCA
259 ACTTC---TTCCTTCTTCAGATAAGTTCTTCTCATTATGAACT-GACTCTGGAAAAGCTGATCCA
**
728431 TTGAATGATGAATTCAA
320 CCGAATGATGAATTCAA
* * * *
728448 TCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
728513 ATTATGAACTCTAACTGGTAATGTTGATCCATCAAATGATGAATTCAAGCGAAAAGTTGAACAAG
66 ATTATGAACTCTAACTGGTAAAGTTGATCCACCAAATGATGAATTCAAGCAAAAAGTTGAACAAG
728578 TTCTTCTCATTATGAA------CTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTCT
131 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCT
728631 TCCAGAAATG
Statistics
Matches: 464, Mismatches: 48, Indels: 34
0.85 0.09 0.06
Matches are distributed among these distances:
331 34 0.07
332 3 0.01
335 8 0.02
336 128 0.28
337 6 0.01
338 194 0.42
339 5 0.01
346 1 0.00
347 85 0.18
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (336 bp):
GCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTCTAACTGGTAAAGTTGATCCACCAAATGATGAATTCAAGCAAAAAGTTGAACAAG
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTG
GCAATATTGATCCACCAAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAAC
TTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTGACTCTGGAAAAGCTGATCCACCGAAT
GATGAATTCAA
Found at i:728631 original size:16 final size:16
Alignment explanation
Indices: 728579--728632 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
728569 TTGAACAAGT
728579 TCTTCTCATTATGAAC
1 TCTTCTCATTATGAAC
* **
728595 TTCTTCTTCA-GATGAGT
1 -TCTTC-TCATTATGAAC
728612 TCTTCTCATTATGAAC
1 TCTTCTCATTATGAAC
728628 TCTTC
1 TCTTC
728633 CAGAAATGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
15 3 0.10
16 14 0.48
17 9 0.31
18 3 0.10
ACGTcount: A:0.20, C:0.24, G:0.09, T:0.46
Consensus pattern (16 bp):
TCTTCTCATTATGAAC
Found at i:729090 original size:22 final size:22
Alignment explanation
Indices: 729065--729119 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
729055 GATAAAGCTT
*
729065 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
* * *
729087 TCATCTTTAAAAAGGGAATTTA
1 TCATCTTTGAAAAGAGAATCTA
729109 TCATCTTTGAA
1 TCATCTTTGAA
729120 GAGTGTAGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:729626 original size:23 final size:26
Alignment explanation
Indices: 729577--729632 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 26
729567 TATAATTTTG
*
729577 AGAAAAAAAATAATTTATATATATTT
1 AGAAATAAAATAATTTATATATATTT
*
729603 ATAAATAAAAT-ATTTAT-T-TATTT
1 AGAAATAAAATAATTTATATATATTT
729626 AGAAATA
1 AGAAATA
729633 TCAGAAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.41
24 1 0.04
25 6 0.22
26 9 0.33
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (26 bp):
AGAAATAAAATAATTTATATATATTT
Found at i:731230 original size:3 final size:3
Alignment explanation
Indices: 731222--731283 Score: 76
Period size: 3 Copynumber: 20.7 Consensus size: 3
731212 GTAAATTTTT
731222 TAA TAA TAA TAA TAA T-A TATA TAA TAA T-A TATA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA TAA
731267 TAA TAA T-A TAAA TAA TA
1 TAA TAA TAA T-AA TAA TA
731284 TTTAAATGAA
Statistics
Matches: 53, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
2 6 0.11
3 39 0.74
4 8 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:731708 original size:120 final size:122
Alignment explanation
Indices: 731488--731716 Score: 293
Period size: 120 Copynumber: 1.9 Consensus size: 122
731478 ACCTATTTCT
* * *
731488 TTCTGTGATAGAGTCATTCAAAAGATTAATAAGCTCTTCTCATTATGAACTTCTTCTTTCTCATT
1 TTCTGTGATAGAATCATGCAAAAGATTAATAAGCTCTTCTCATTATGAACTTCTTCTTTCACATT
***** *
731553 CAGATGAGTTCTTCTCATTATGAACTTTCTGTGGAAAGGTTGATACTAATCTATCTGC
66 -AGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGATACTAATCTATCTGC
* * * * *
731611 TTCTGTGATAGAATTATGCAAAAGGTTGAATAAGCTCTTCTCATTGTGAACTTTTTC-TTCAGA-
1 TTCTGTGATAGAATCATGCAAAAGATT-AATAAGCTCTTCTCATTATGAACTTCTTCTTTCACAT
731674 T-GATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGAT
65 TAGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGAT
731717 CCATCAAGTG
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
120 36 0.40
122 1 0.01
123 27 0.30
124 27 0.30
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (122 bp):
TTCTGTGATAGAATCATGCAAAAGATTAATAAGCTCTTCTCATTATGAACTTCTTCTTTCACATT
AGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGATACTAATCTATCTGC
Found at i:731953 original size:230 final size:227
Alignment explanation
Indices: 731675--732193 Score: 752
Period size: 227 Copynumber: 2.3 Consensus size: 227
731665 TTCTTCAGAT
* *
731675 GATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGATCA
1 GATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGATCCATCAACTGATGGATTTGAGCA
* *
731740 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGATGAGTTCTTCTC
66 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTT--GA-GATGAGTTCTTCTC
* *
731805 ATTATGAACTCTACCATGGAAATTTTAATCCATCAAATGATGAATTCAAAC-AAAAGGTTAAACA
128 ATTATGAACTCTACC-TGGAAATGTTAATCCATCAAATAATGAATTCAAACAAAAAGGTTAAACA
*
731869 AATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCA
192 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
**** * * **
731905 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAACTGATGAATTCAAGCA
1 GATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGATCCATCAACTGATGGATTTGAGCA
* * *
731970 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTTTTCCTTCTTTAGATGAGTTCTTCTTATT
66 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTGAGATGAGTTCTTCTCATT
** * * *
732035 ATGAACTCTTTCTGGCAATGTTAATCCATCAAATAATGAATTTAAACAAAAAGGTTGAACAAATT
131 ATGAACTCTACCTGGAAATGTTAATCCATCAAATAATGAATTCAAACAAAAAGGTTAAACAAATT
732100 CTTCTCATTATGAACTTCTTCTTCCTTCTTCA
196 CTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * * *
732132 GATGAGTTCTTCTTATTATGAACTCGAACTGGTAATGTTGATCCATCAATTGATGGATTTGA
1 GATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGATCCATCAACTGATGGATTTGA
732194 ATCTTTGCTA
Statistics
Matches: 253, Mismatches: 35, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
226 31 0.12
227 123 0.49
228 1 0.00
230 98 0.39
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (227 bp):
GATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGATCCATCAACTGATGGATTTGAGCA
AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTGAGATGAGTTCTTCTCATT
ATGAACTCTACCTGGAAATGTTAATCCATCAAATAATGAATTCAAACAAAAAGGTTAAACAAATT
CTTCTCATTATGAACTTCTTCTTCCTTCTTCA
Found at i:732141 original size:114 final size:113
Alignment explanation
Indices: 731675--732186 Score: 673
Period size: 113 Copynumber: 4.5 Consensus size: 113
731665 TTCTTCAGAT
* * * * ** *
731675 GATGAGTTCTTCTCATTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGATCA
1 GATGAGTTCTTCTCATTATGAACTCTAACTGGAAATGTTGATCCATCAAATGATGAATTCAAACA
*
731740 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGA
66 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A
* * *
731790 TGATGAGTTCTTCTCATTATGAACTCTACCATGGAAATTTTAATCCATCAAATGATGAATTCAAA
1 -GATGAGTTCTTCTCATTATGAACTCTAAC-TGGAAATGTTGATCCATCAAATGATGAATTCAAA
* *
731855 CAAAAGGTTAAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCA
64 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* ** * * * *
731905 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAACTGATGAATTCAAGCA
1 GATGAGTTCTTCTCATTATGAACTCTAACTGGAAATGTTGATCCATCAAATGATGAATTCAAACA
* * *
731970 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTTTTCCTTCTTTA
66 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* ** * * * *
732018 GATGAGTTCTTCTTATTATGAACTCTTTCTGGCAATGTTAATCCATCAAATAATGAATTTAAACA
1 GATGAGTTCTTCTCATTATGAACTCTAACTGGAAATGTTGATCCATCAAATGATGAATTCAAAC-
732083 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
65 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * * *
732132 GATGAGTTCTTCTTATTATGAACTCGAACTGGTAATGTTGATCCATCAATTGATG
1 GATGAGTTCTTCTCATTATGAACTCTAACTGGAAATGTTGATCCATCAAATGATG
732187 GATTTGAATC
Statistics
Matches: 346, Mismatches: 48, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
113 126 0.36
114 120 0.35
115 1 0.00
116 27 0.08
117 72 0.21
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (113 bp):
GATGAGTTCTTCTCATTATGAACTCTAACTGGAAATGTTGATCCATCAAATGATGAATTCAAACA
AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
Found at i:733027 original size:94 final size:94
Alignment explanation
Indices: 732893--733145 Score: 422
Period size: 94 Copynumber: 2.7 Consensus size: 94
732883 TCTTTTAATC
* * * *
732893 CAATGATTGG--TTCTGTGGTTCCTACCGAA-CAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 CAATGATTGGTTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
*
732955 ATGCTATGAGCACATTCATCTTCTAAATT
66 ATGCTATGAGCACATTCATCTTCCAAATT
732984 CAATGATTGGTTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 CAATGATTGGTTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
733049 ATGCTATGAGCACATTCATCTTCCAAATT
66 ATGCTATGAGCACATTCATCTTCCAAATT
* *
733078 CAATGATTGGTTTTTTTGGGTTCATACCAAACCATATCAGATAACTCAAAGAACACTTCCAGAAG
1 CAATGATTGGTTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
733143 ATG
66 ATG
733146 TTATTGGGTC
Statistics
Matches: 152, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
91 10 0.07
93 15 0.10
94 127 0.84
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (94 bp):
CAATGATTGGTTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
ATGCTATGAGCACATTCATCTTCCAAATT
Found at i:734147 original size:1 final size:1
Alignment explanation
Indices: 734143--734208 Score: 60
Period size: 1 Copynumber: 66.0 Consensus size: 1
734133 CTTGACCCCC
* * * * * * * *
734143 TTTTTTTCTTTTTTTCTTTTTTATTTTCTTTTTTTTTTTCTTTTCTTTTTTCTTTTTTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
734208 T
1 T
734209 CCAAGCATAA
Statistics
Matches: 49, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.88
Consensus pattern (1 bp):
T
Found at i:734171 original size:12 final size:11
Alignment explanation
Indices: 734151--734202 Score: 77
Period size: 12 Copynumber: 4.5 Consensus size: 11
734141 CCTTTTTTTC
734151 TTTTTTTCTTT
1 TTTTTTTCTTT
734162 TTTATTTTCTTTT
1 TTT-TTTTC-TTT
734175 TTTTTTTCTTT
1 TTTTTTTCTTT
734186 TCTTTTTTCTTT
1 T-TTTTTTCTTT
734198 TTTTT
1 TTTTT
734203 CTTTTTCCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
11 11 0.29
12 21 0.55
13 6 0.16
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:734183 original size:24 final size:24
Alignment explanation
Indices: 734146--734202 Score: 89
Period size: 24 Copynumber: 2.3 Consensus size: 24
734136 GACCCCCTTT
734146 TTTTCTTTTTTTCTTTT-TTATTTTC
1 TTTT-TTTTTTTCTTTTCTT-TTTTC
734171 TTTTTTTTTTTCTTTTCTTTTTTC
1 TTTTTTTTTTTCTTTTCTTTTTTC
734195 TTTTTTTT
1 TTTTTTTT
734203 CTTTTTCCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.88
Consensus pattern (24 bp):
TTTTTTTTTTTCTTTTCTTTTTTC
Found at i:741559 original size:15 final size:15
Alignment explanation
Indices: 741536--741567 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
741526 AATAATGAAT
741536 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
741551 AATGCATGTATGCAA
1 AATGAATGTATGCAA
741566 AA
1 AA
741568 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:745370 original size:23 final size:23
Alignment explanation
Indices: 745344--745390 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
745334 TGAGAAAAAA
*
745344 AAAAT-TTATATATATTTATAAAT
1 AAAATATT-TATATATTTAGAAAT
*
745367 AAAATATTTATTTATTTAGAAAT
1 AAAATATTTATATATTTAGAAAT
745390 A
1 A
745391 TCAGAAAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 19 0.90
24 2 0.10
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
AAAATATTTATATATTTAGAAAT
Found at i:746998 original size:3 final size:3
Alignment explanation
Indices: 746990--747054 Score: 82
Period size: 3 Copynumber: 21.7 Consensus size: 3
746980 GTAAATTTTT
746990 TAA TAA TAA TAA TAA T-A TATA TAA TAA T-A TATA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA TAA
747035 TAA TAA TAA T-A TAAA TAA TA
1 TAA TAA TAA TAA T-AA TAA TA
747055 TTTAAATGAA
Statistics
Matches: 56, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
2 6 0.11
3 42 0.75
4 8 0.14
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:749703 original size:114 final size:114
Alignment explanation
Indices: 749503--750066 Score: 904
Period size: 114 Copynumber: 5.0 Consensus size: 114
749493 CGATCATGCA
* * * * *
749503 GTTCATCTTTTAATTCCAATGATTGGTTATGGGGTTCTTACCGAAA-CAGATCAGATAACTCAAA
1 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCATACC-AAATCAGATCAGATAACTCAAA
*
749567 GAACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAACAC
65 GAACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTACGAACAC
* * *
749617 GTTCATCTTTCAAATCCAATGATTGGTTTTGAGGTTAATACCAAATCAGATCAGATAACTCAAAG
1 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAG
* * *
749682 AACACTTTCAGAAGATGCTATTGGGTCTCCTTATTTCTACTGCGAACAC
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTACGAACAC
749731 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTC--ACCAAATCAGATCAGATAACTCAAAG
1 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAG
* *
749794 AACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTACGAAAAC
66 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTACGAACAC
* * *
749843 ATTCATCTTTCAAATCTAATTATTGGTTTTGGGGTTCATACCAAATAAGATCAGATAACTCAAAG
1 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAG
749908 AACACTTCCAGAAGATGCTATTGGGTC-TCTTTATTTCTACTACGAACAC
66 AACACTTCCAGAAGATGCTATTGGGTCTTC-TTATTTCTACTACGAACAC
*
749957 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTTATACCAAATCAGATCAGATAACTCAAAG
1 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAG
750022 AACACTTCCAGAAGATGCTATTGGGTC-TCTTTATTTCTACTACGA
66 AACACTTCCAGAAGATGCTATTGGGTCTTC-TTATTTCTACTACGA
750067 GAACGTGGCA
Statistics
Matches: 421, Mismatches: 25, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
112 107 0.25
113 4 0.01
114 310 0.74
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (114 bp):
GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAG
AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTACGAACAC
Found at i:749811 original size:226 final size:226
Alignment explanation
Indices: 749503--750066 Score: 907
Period size: 226 Copynumber: 2.5 Consensus size: 226
749493 CGATCATGCA
* * * *
749503 GTTCATCTTTTAATTCCAATGATTGGTTATGGGGTTCTTACCGAAA-CAGATCAGATAACTCAAA
1 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTC--ACC-AAATCAGATCAGATAACTCAAA
* * *
749567 GAACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAACACGTTCATCTTTCAAAT
63 GAACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTACGAAAACATTCATCTTTCAAAT
* *
749632 CCAATGATTGGTTTTGAGGTTAATACCAAATCAGATCAGATAACTCAAAGAACACTTTCAGAAGA
128 CCAATGATTGGTTTTGAGGTTAATACCAAATAAGATCAGATAACTCAAAGAACACTTCCAGAAGA
*
749697 TGCTATTGGGTCTCCTTATTTCTACTGCGAACAC
193 TGCTATTGGGTCTCCTTATTTCTACTACGAACAC
749731 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCACCAAATCAGATCAGATAACTCAAAGAA
1 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCACCAAATCAGATCAGATAACTCAAAGAA
* *
749796 CACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTACGAAAACATTCATCTTTCAAATCTA
66 CACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTACGAAAACATTCATCTTTCAAATCCA
* * *
749861 ATTATTGGTTTTGGGGTTCATACCAAATAAGATCAGATAACTCAAAGAACACTTCCAGAAGATGC
131 ATGATTGGTTTTGAGGTTAATACCAAATAAGATCAGATAACTCAAAGAACACTTCCAGAAGATGC
*
749926 TATTGGGTCTCTTTATTTCTACTACGAACAC
196 TATTGGGTCTCCTTATTTCTACTACGAACAC
*
749957 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTTATACCAAATCAGATCAGATAACTCAAAG
1 GTTCATCTTTCAAATCTAATGATTGGTTTTGGGG-TT-CACCAAATCAGATCAGATAACTCAAAG
750022 AACACTTCCAGAAGATGCTATTGGGTC-TCTTTATTTCTACTACGA
64 AACACTTCCAGAAGATGCTATTGGGTCTTC-TTATTTCTACTACGA
750067 GAACGTGGCA
Statistics
Matches: 314, Mismatches: 18, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
225 3 0.01
226 207 0.66
227 3 0.01
228 101 0.32
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (226 bp):
GTTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCACCAAATCAGATCAGATAACTCAAAGAA
CACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTACGAAAACATTCATCTTTCAAATCCA
ATGATTGGTTTTGAGGTTAATACCAAATAAGATCAGATAACTCAAAGAACACTTCCAGAAGATGC
TATTGGGTCTCCTTATTTCTACTACGAACAC
Found at i:752231 original size:17 final size:16
Alignment explanation
Indices: 752200--752234 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
752190 ATTTAATTTC
*
752200 TTCCTTTTTTTCTTTT
1 TTCCTTTTCTTCTTTT
752216 TTCCTTTTCCTTCTTTT
1 TTCCTTTT-CTTCTTTT
752233 TT
1 TT
752235 TTCATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTCCTTTTCTTCTTTT
Found at i:752242 original size:9 final size:8
Alignment explanation
Indices: 752203--752274 Score: 65
Period size: 8 Copynumber: 8.8 Consensus size: 8
752193 TAATTTCTTC
752203 CTTTTTTT
1 CTTTTTTT
*
752211 CTTTTTTC
1 CTTTTTTT
*
752219 CTTTTCCTT
1 CTTTT-TTT
752228 CTTTTTTTT
1 C-TTTTTTT
*
752237 CATTTTTT
1 CTTTTTTT
*
752245 CTTTTTCAT
1 CTTTTT-TT
752254 CTTTTTTT
1 CTTTTTTT
*
752262 CTTTCTTT
1 CTTTTTTT
752270 -TTTTT
1 CTTTTT
752275 CTTTGCTGGA
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
7 4 0.08
8 31 0.61
9 12 0.24
10 4 0.08
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (8 bp):
CTTTTTTT
Found at i:752242 original size:27 final size:25
Alignment explanation
Indices: 752199--752300 Score: 89
Period size: 26 Copynumber: 3.9 Consensus size: 25
752189 GATTTAATTT
*
752199 CTTCCTTTTTTTCTTTTTTCCTTTTC
1 CTTCTTTTTTTTCTTTTTT-CTTTTC
*
752225 CTTCTTTTTTTTCATTTTTTCTTTTT
1 CTTCTTTTTTTTC-TTTTTTCTTTTC
* *
752251 CATC-TTTTTTTCTTTCTTTTTTTTC
1 CTTCTTTTTTTTCTTT-TTTCTTTTC
* **
752276 TTTGCTGGATTTTTCTTTTTTCTTT
1 CTT-CT-TTTTTTTCTTTTTTCTTT
752301 CTTTGTTGGA
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
24 3 0.05
25 16 0.26
26 21 0.34
27 12 0.20
28 9 0.15
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.75
Consensus pattern (25 bp):
CTTCTTTTTTTTCTTTTTTCTTTTC
Found at i:752246 original size:17 final size:17
Alignment explanation
Indices: 752212--752271 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
752202 CCTTTTTTTC
*
752212 TTTTTTCCTTTTCCTTCTT
1 TTTTTTCATTTT--TTCTT
752231 TTTTTTCATTTTTTCTT
1 TTTTTTCATTTTTTCTT
** *
752248 TTTCATCTTTTTTTCTT
1 TTTTTTCATTTTTTCTT
752265 TCTTTTT
1 T-TTTTT
752272 TTTCTTTGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
17 20 0.59
18 3 0.09
19 11 0.32
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTCATTTTTTCTT
Found at i:752264 original size:34 final size:35
Alignment explanation
Indices: 752205--752271 Score: 86
Period size: 34 Copynumber: 1.9 Consensus size: 35
752195 ATTTCTTCCT
752205 TTTTTTCTTTTTTCCTTTTCCTTCTTT-TTTTTCA
1 TTTTTTCTTTTTTCCTTTTCCTTCTTTCTTTTTCA
*
752239 TTTTTTC-TTTTTCATCTTTT-TTTCTTTCTTTTT
1 TTTTTTCTTTTTTC--CTTTTCCTTCTTTCTTTTT
752272 TTTCTTTGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 6 0.21
34 13 0.45
35 10 0.34
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (35 bp):
TTTTTTCTTTTTTCCTTTTCCTTCTTTCTTTTTCA
Found at i:752275 original size:9 final size:9
Alignment explanation
Indices: 752204--752278 Score: 57
Period size: 9 Copynumber: 8.2 Consensus size: 9
752194 AATTTCTTCC
752204 TTTTTTTC-
1 TTTTTTTCT
*
752212 TTTTTTCCT
1 TTTTTTTCT
**
752221 TTTCCTTCT
1 TTTTTTTCT
752230 TTTTTTTC-
1 TTTTTTTCT
*
752238 ATTTTTTCT
1 TTTTTTTCT
752247 TTTTCATCTT-T
1 TTTT--T-TTCT
752258 TTTTCTTTCT
1 TTTT-TTTCT
752268 TTTTTTTCT
1 TTTTTTTCT
752277 TT
1 TT
752279 GCTGGATTTT
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
8 14 0.27
9 24 0.46
10 6 0.12
11 6 0.12
12 2 0.04
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:752303 original size:26 final size:24
Alignment explanation
Indices: 752263--752311 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
752253 TCTTTTTTTC
752263 TTTCTTTTTTTTCTTTGCTGGATT
1 TTTCTTTTTTTTCTTTGCTGGATT
*
752287 TTTCTTTTTTCTTTCTTTGTTGGAT
1 TTTC-TTTTT-TTTCTTTGCTGGAT
752312 GAGTATAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 5 0.23
26 13 0.59
ACGTcount: A:0.04, C:0.12, G:0.12, T:0.71
Consensus pattern (24 bp):
TTTCTTTTTTTTCTTTGCTGGATT
Found at i:752375 original size:8 final size:9
Alignment explanation
Indices: 752344--752374 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
752334 TGAATACCTC
752344 TTTTTCCTT
1 TTTTTCCTT
752353 TTTTTCCTT
1 TTTTTCCTT
752362 TTTTTCCTT
1 TTTTTCCTT
752371 TTTT
1 TTTT
752375 CTTCTTCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTCCTT
Found at i:757327 original size:22 final size:25
Alignment explanation
Indices: 757299--757352 Score: 78
Period size: 22 Copynumber: 2.3 Consensus size: 25
757289 TCAATACCTG
*
757299 AATAAAATAA-ATAAAA-AAT-ATT
1 AATAAAATAATATAAAATAATAAGT
757321 AATAAAATAATATAAAATAATAAGT
1 AATAAAATAATATAAAATAATAAGT
757346 AATAAAA
1 AATAAAA
757353 AATTTGAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 10 0.36
23 6 0.21
24 3 0.11
25 9 0.32
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (25 bp):
AATAAAATAATATAAAATAATAAGT
Found at i:757337 original size:10 final size:10
Alignment explanation
Indices: 757300--757342 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
757290 CAATACCTGA
757300 ATAAAATAAAT
1 ATAAAAT-AAT
* *
757311 AAAAAATATT
1 ATAAAATAAT
757321 AATAAAATAAT
1 -ATAAAATAAT
757332 ATAAAATAAT
1 ATAAAATAAT
757342 A
1 A
757343 AGTAATAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 13 0.48
11 14 0.52
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
ATAAAATAAT
Found at i:757676 original size:154 final size:154
Alignment explanation
Indices: 757487--757794 Score: 600
Period size: 154 Copynumber: 2.0 Consensus size: 154
757477 CGGGTACAAA
757487 TTTTTTACTTGGCGGGTAAAGTGATGTGAATAAATGGTTTTTTTTAAATATTTTGGGAGTCGCCA
1 TTTTTTACTTGGCGGGTAAAGTGATGTGAATAAATGGTTTTTTTTAAATATTTTGGGAGTCGCCA
757552 TCGGCCTTTTGGGTCAGGTAGGTCGAATACCTAAAAATCATCATTTTAAAAGAGCTTTTTAAGAA
66 TCGGCCTTTTGGGTCAGGTAGGTCGAATACCTAAAAATCATCATTTTAAAAGAG-TTTTTAAGAA
757617 AACATCGATTAAAAGATAAATTGGT
130 AACATCGATTAAAAGATAAATTGGT
757642 TTTTTTACTTGGCGGGT-AAGTGATGTGAATAAATGGTTTTTTTTAAATATTTTGGGAGTCGCCA
1 TTTTTTACTTGGCGGGTAAAGTGATGTGAATAAATGGTTTTTTTTAAATATTTTGGGAGTCGCCA
757706 TCGGCCTTTTGGGTCAGGTAGGTCGAATACCTAAAAATCATCATTTTAAAAGAGTTTTTAAGAAA
66 TCGGCCTTTTGGGTCAGGTAGGTCGAATACCTAAAAATCATCATTTTAAAAGAGTTTTTAAGAAA
757771 ACATCGATTAAAAGATAAATTGGT
131 ACATCGATTAAAAGATAAATTGGT
757795 ATGCGTTTTA
Statistics
Matches: 153, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
153 35 0.23
154 101 0.66
155 17 0.11
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.36
Consensus pattern (154 bp):
TTTTTTACTTGGCGGGTAAAGTGATGTGAATAAATGGTTTTTTTTAAATATTTTGGGAGTCGCCA
TCGGCCTTTTGGGTCAGGTAGGTCGAATACCTAAAAATCATCATTTTAAAAGAGTTTTTAAGAAA
ACATCGATTAAAAGATAAATTGGT
Found at i:758199 original size:112 final size:108
Alignment explanation
Indices: 758000--758221 Score: 252
Period size: 112 Copynumber: 2.0 Consensus size: 108
757990 GGAAAAAAAT
* * * * *
758000 ATTAATTTATATATATTTATAATAAAATATTTATTTATTTAGAAATATCATAAAAGAACTTCTAG
1 ATTAATTAATATATATTTATAATAAAATATTTATTTATTTAAAAATATCAGAAAAGAACATCCAG
* *
758065 GTGCCTTAAGACAGCTCTTTTCTTCGATATTAAAAAATAAATAA
66 GTGCCTTAAGACAGCTCCTTTCTT-AATATTAAAAAATAAATAA
758109 ATTAATTAATATATAATTTATAA-AATAGGATATTTATTTATTTAAAAATATCAGAAAATTG-AC
1 ATTAATTAATATAT-ATTTATAATAA-A--ATATTTATTTATTTAAAAATATCAGAAAA--GAAC
* ** * *
758172 ATCCAGTTGTTTTAAGACTG-TCCTTTCTTAATATTGAAAAATAAATAA
60 ATCCAGGTGCCTTAAGACAGCTCCTTTCTTAATATTAAAAAATAAATAA
758220 AT
1 AT
758222 ATTAAAACAT
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
109 15 0.16
110 9 0.09
111 19 0.20
112 35 0.37
113 16 0.17
114 1 0.01
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (108 bp):
ATTAATTAATATATATTTATAATAAAATATTTATTTATTTAAAAATATCAGAAAAGAACATCCAG
GTGCCTTAAGACAGCTCCTTTCTTAATATTAAAAAATAAATAA
Found at i:758258 original size:20 final size:20
Alignment explanation
Indices: 758223--758262 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
758213 TAAATAAATA
*
758223 TTAAAACATGATTAAAATAAG
1 TTAAAACATAATT-AAATAAG
758244 TTAAAA-ATAATTAAATAAG
1 TTAAAACATAATTAAATAAG
758263 ATTTTAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 5 0.28
21 6 0.33
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (20 bp):
TTAAAACATAATTAAATAAG
Found at i:758442 original size:26 final size:27
Alignment explanation
Indices: 758390--758445 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
758380 GACAACAATC
*
758390 AATAAAATTAAAATGATAGGTACAAAT
1 AATAAAATTAAAATGATAGGTAAAAAT
*
758417 AATAAAA-TAAAACTTATA-GTAAAAAT
1 AATAAAATTAAAA-TGATAGGTAAAAAT
758443 AAT
1 AAT
758446 TAGTAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.27
Consensus pattern (27 bp):
AATAAAATTAAAATGATAGGTAAAAAT
Found at i:759722 original size:3 final size:3
Alignment explanation
Indices: 759714--759752 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
759704 AGCCTGTTTG
*
759714 TAA TAA TAA TAA TAA TAAA TAA -AA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
759753 ATAAATAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:759746 original size:24 final size:25
Alignment explanation
Indices: 759714--759761 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
759704 AGCCTGTTTG
*
759714 TAATAATAATAAT-AATAAATAAAA
1 TAATAATAACAATAAATAAATAAAA
759738 TAATAATAACAATAAATAAATAAA
1 TAATAATAACAATAAATAAATAAA
759762 TAAAATGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (25 bp):
TAATAATAACAATAAATAAATAAAA
Found at i:759764 original size:21 final size:21
Alignment explanation
Indices: 759715--759757 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
759705 GCCTGTTTGT
*
759715 AATAATAATAATAATAAATAA
1 AATAATAATAACAATAAATAA
759736 AATAATAATAACAATAAATAA
1 AATAATAATAACAATAAATAA
759757 A
1 A
759758 TAAATAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (21 bp):
AATAATAATAACAATAAATAA
Found at i:765278 original size:18 final size:18
Alignment explanation
Indices: 765255--765324 Score: 86
Period size: 18 Copynumber: 3.8 Consensus size: 18
765245 AAGGGATTAT
*
765255 TAGTGGTCCTTCGGGACA
1 TAGTGGTCCTTCGGAACA
**
765273 TAGTGGTTGTTCGGAACAA
1 TAGTGGTCCTTCGGAAC-A
*
765292 TCAGTGGTTCTTCGGAACA
1 T-AGTGGTCCTTCGGAACA
765311 TAGTGGTCCTTCGG
1 TAGTGGTCCTTCGG
765325 GACAAATATT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
18 26 0.58
19 4 0.09
20 15 0.33
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (18 bp):
TAGTGGTCCTTCGGAACA
Found at i:765324 original size:38 final size:38
Alignment explanation
Indices: 765256--765329 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
765246 AGGGATTATT
* **
765256 AGTGGTCCTTCGGGACATAGTGGTTGTTCGGAACAATC
1 AGTGGTCCTTCGGAACATAGTGGTCCTTCGGAACAATC
* *
765294 AGTGGTTCTTCGGAACATAGTGGTCCTTCGGGACAA
1 AGTGGTCCTTCGGAACATAGTGGTCCTTCGGAACAA
765330 ATATTCAGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (38 bp):
AGTGGTCCTTCGGAACATAGTGGTCCTTCGGAACAATC
Found at i:766259 original size:3 final size:3
Alignment explanation
Indices: 766230--766332 Score: 140
Period size: 3 Copynumber: 34.7 Consensus size: 3
766220 TGTCTTTCTT
* * *
766230 TTA TT- TTA TTTA TT- TTA TGTT TTA TTA TTA GTA GTA TTA TTA TTA
1 TTA TTA TTA -TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
766275 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
766322 TTA TTA TTA TT
1 TTA TTA TTA TT
766333 TATTTTGTTT
Statistics
Matches: 91, Mismatches: 4, Indels: 10
0.87 0.04 0.10
Matches are distributed among these distances:
2 6 0.07
3 80 0.88
4 5 0.05
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:766934 original size:24 final size:24
Alignment explanation
Indices: 766907--766953 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
766897 AAAACCAAAA
766907 AAAACAAA-AGAAAAAAAAAGAGAG
1 AAAACAAACA-AAAAAAAAAGAGAG
* *
766931 AAAATAAACAAAAAGAAAAGAGA
1 AAAACAAACAAAAAAAAAAGAGA
766954 AGAATCGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.79, C:0.04, G:0.15, T:0.02
Consensus pattern (24 bp):
AAAACAAACAAAAAAAAAAGAGAG
Found at i:767790 original size:20 final size:20
Alignment explanation
Indices: 767762--767806 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
767752 CTCTTTTAAT
* *
767762 ATTTTATTTTAAAAATAAAA
1 ATTTAATTTCAAAAATAAAA
* *
767782 ATTTAATTTCATATATAAAA
1 ATTTAATTTCAAAAATAAAA
767802 ATTTA
1 ATTTA
767807 TTAAAAACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTAATTTCAAAAATAAAA
Found at i:768505 original size:3 final size:3
Alignment explanation
Indices: 768497--768534 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
768487 CACAACCACT
* *
768497 ATC ATC ATC ATC ATC GTC ATC ATC AAC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
768535 AACTTGAAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:771099 original size:7 final size:7
Alignment explanation
Indices: 771083--771113 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
771073 CATATTTTTC
771083 ATAAAAA
1 ATAAAAA
*
771090 ATAGAAA
1 ATAAAAA
771097 ATAAAAA
1 ATAAAAA
771104 ATAAAAA
1 ATAAAAA
771111 ATA
1 ATA
771114 TTATATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (7 bp):
ATAAAAA
Found at i:771139 original size:25 final size:26
Alignment explanation
Indices: 771104--771185 Score: 132
Period size: 25 Copynumber: 3.2 Consensus size: 26
771094 AAAATAAAAA
*
771104 ATAAAAAATAT-TATATATAATTAAT
1 ATAAAATATATATATATATAATTAAT
771129 ATAAAATATATATATATATAATTAAT
1 ATAAAATATATATATATATAATTAAT
*
771155 AAAAAATAT-TATATATATAATTAAT
1 ATAAAATATATATATATATAATTAAT
771180 ATAAAA
1 ATAAAA
771186 ATAAAAAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
25 31 0.58
26 22 0.42
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
ATAAAATATATATATATATAATTAAT
Found at i:771171 original size:33 final size:32
Alignment explanation
Indices: 771134--771210 Score: 111
Period size: 33 Copynumber: 2.3 Consensus size: 32
771124 TTAATATAAA
*
771134 ATATATATATATATAATTAATAAAAAATATTAT
1 ATATATATATATATAA-AAATAAAAAATATTAT
771167 ATATATA-ATTAATATAAAAATAAAAAATATTAT
1 ATATATATA-T-ATATAAAAATAAAAAATATTAT
771200 ATATATATATA
1 ATATATATATA
771211 ATCGGGGAGG
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
32 2 0.05
33 31 0.77
34 7 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (32 bp):
ATATATATATATATAAAAATAAAAAATATTAT
Found at i:771194 original size:7 final size:8
Alignment explanation
Indices: 771083--771196 Score: 51
Period size: 7 Copynumber: 14.2 Consensus size: 8
771073 CATATTTTTC
771083 ATAAAAA-
1 ATAAAAAT
771090 ATAGAAAAT
1 ATA-AAAAT
771099 A-AAAAAT
1 ATAAAAAT
771106 A-AAAAAT
1 ATAAAAAT
* *
771113 AT-TATAT
1 ATAAAAAT
*
771120 ATAATTAAT
1 ATAA-AAAT
771129 ATAAAATAT
1 ATAAAA-AT
* *
771138 ATATATAT
1 ATAAAAAT
*
771146 ATAATTAAT
1 ATAA-AAAT
771155 A-AAAAAT
1 ATAAAAAT
* *
771162 ATTATATAT
1 A-TAAAAAT
*
771171 ATAATTAAT
1 ATAA-AAAT
771180 ATAAAAAT
1 ATAAAAAT
771188 A-AAAAAT
1 ATAAAAAT
771195 AT
1 AT
771197 TATATATATA
Statistics
Matches: 78, Mismatches: 18, Indels: 21
0.67 0.15 0.18
Matches are distributed among these distances:
7 32 0.41
8 19 0.24
9 27 0.35
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (8 bp):
ATAAAAAT
Found at i:782636 original size:22 final size:22
Alignment explanation
Indices: 782610--782651 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
782600 TAATAAATTA
782610 TTTAAAATAAATCAATCCATGT
1 TTTAAAATAAATCAATCCATGT
782632 TTTAAAATAAATCAATCCAT
1 TTTAAAATAAATCAATCCAT
782652 ACTAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATGT
Found at i:782661 original size:22 final size:22
Alignment explanation
Indices: 782612--782660 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
782602 ATAAATTATT
* **
782612 TAAAATAAATCAATCCATGTTT
1 TAAAATAAATCAATCCATCTAA
782634 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCAT-CTAA
782657 TAAA
1 TAAA
782661 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATCTAA
Found at i:782664 original size:54 final size:54
Alignment explanation
Indices: 782600--783170 Score: 493
Period size: 54 Copynumber: 10.6 Consensus size: 54
782590 AAAACTACAA
*
782600 TAATAAATTATTTAAAATAAATCAATCCATGTTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
** *
782654 TAATAAATTATTTAAAATAAATCAATCCATATAACTACAATAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCATAT---TTTAA-AATAAATCAATCCATA--C
* * * * *
782714 TAAAATAAATCAATCT-ATACAAATAAAT---TA-TTTAAAATAAATCAAT-CATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
782765 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* **
782819 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATAC
** * ** * ** **
782876 TTTTAAAATAAAT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAC
** * * * *
782930 TTTTAAA--A--T-AAATTAATCCATACTAATAAATTATTTAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAAT-C-CAT--ATT-TTAAAATAAATCAATCCATAC
* * *
782984 -AACTACA--A--T--AATAAATCAATCTATATTTTAAAATAAATCAATCTATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
783032 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
783086 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
783140 TAATAAATTATTTAAAATAAATCAATTCATA
1 TAATAAATTATTTAAAATAAATCAATCCATA
783171 CAACTACAAT
Statistics
Matches: 428, Mismatches: 52, Indels: 74
0.77 0.09 0.13
Matches are distributed among these distances:
48 27 0.06
49 22 0.05
50 10 0.02
51 3 0.01
52 6 0.01
53 49 0.11
54 225 0.53
55 6 0.01
56 5 0.01
57 16 0.04
58 37 0.09
59 2 0.00
60 1 0.00
62 16 0.04
63 3 0.01
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
Found at i:782751 original size:14 final size:14
Alignment explanation
Indices: 782734--782786 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
782724 CAATCTATAC
782734 AAATAAATTATTTA
1 AAATAAATTATTTA
* *
782748 AAATAAATCAATCATA
1 AAATAAAT-TAT-TTA
*
782764 CTAATAAATTATTTA
1 -AAATAAATTATTTA
782779 AAATAAAT
1 AAATAAAT
782787 CAATCCATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
14 15 0.50
15 4 0.13
16 4 0.13
17 7 0.23
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATAAATTATTTA
Found at i:782786 original size:165 final size:166
Alignment explanation
Indices: 782600--783251 Score: 790
Period size: 165 Copynumber: 4.0 Consensus size: 166
782590 AAAACTACAA
*
782600 TAATAAATTATTTAAAATAAATCAATCCATGTTTTAAAATAAATCAATCCATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
* *
782665 TTAAAATAAATCAATCCATATAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCT
66 TTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCC
782730 ATACAAATAAATTATTTAAAATAAATCAAT-CATAC
131 ATACAAATAAATTATTTAAAATAAATCAATCCATAC
782765 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
782830 TTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCC
66 TTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCC
*
782895 ATACTAATAAATTATTTAAAATAAATCAATCCATA-
131 ATACAAATAAATTATTTAAAATAAATCAATCCATAC
** * * * *
782930 TTTTAAA--A--T-AAATTAATCCATACTAATAAATTATTTAAATAAATCAATCCATAC-AACTA
1 TAATAAATTATTTAAAATAAATCAAT-C-CAT--ATT-TTAAAATAAATCAATCCATACTAA-TA
* * * ** **
782989 CA--A--T--AATAAATCAAT-C-TA-TATTTTAA-AATAAATCAAT-C-TATACT--AATAAAT
60 AATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTTTAAAATAAAT
* * ** * * *
783040 TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
125 CAATCCATACAAATAAAT---TA-TTTAAAATAAATCAATCCATAC
*
783086 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
* **
783151 TTAAAATAAATCAATTCATACAACTACAATAATAAAATCAATCTTTATTTTAAAATAAATCAATC
66 TTAAAATAAATCAATCCATACAACTACAATAAT-AAATCAATCCATATTTTAAAATAAATCAATC
*
783216 CATACTAATAAATTATTTAAAATAAATCAATCCATA
130 CATACAAATAAATTATTTAAAATAAATCAATCCATA
783252 TTTTAAAATA
Statistics
Matches: 406, Mismatches: 48, Indels: 64
0.78 0.09 0.12
Matches are distributed among these distances:
151 17 0.04
153 4 0.01
154 3 0.01
155 32 0.08
156 31 0.08
157 7 0.02
158 3 0.01
159 13 0.03
160 13 0.03
161 13 0.03
162 13 0.03
163 3 0.01
164 7 0.02
165 188 0.46
166 7 0.02
167 29 0.07
168 2 0.00
169 4 0.01
171 17 0.04
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (166 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
TTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCC
ATACAAATAAATTATTTAAAATAAATCAATCCATAC
Found at i:782801 original size:22 final size:22
Alignment explanation
Indices: 782775--782817 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
782765 TAATAAATTA
782775 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
782797 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
782818 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:782826 original size:22 final size:22
Alignment explanation
Indices: 782777--782825 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
782767 ATAAATTATT
**
782777 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
782799 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
782822 TAAA
1 TAAA
782826 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:782881 original size:133 final size:133
Alignment explanation
Indices: 782744--783251 Score: 744
Period size: 133 Copynumber: 3.8 Consensus size: 133
782734 AAATAAATTA
782744 TTTAAAATAAATCAATCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAAT
1 TTTAAAATAAATCAATCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAAT
*
782809 CAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCA
66 CAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCAA
782874 TAT
131 TAT
782877 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAAT-CATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
* *
782942 TTAATCCATACTAATAAATTATTT-AAATAAATCAATCCATACAACTACAATAATAAATCAATCT
65 TCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCA
783006 ATAT
130 ATAT
783010 TTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATC-ATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
*** * * *
783075 TCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCTATA
65 TCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT-AATAAATCAAT-
783139 CTAATAAATT
128 C-AAT--A-T
* * **
783149 ATTTAAAATAAATCAATTCATAC-AACTACA--A--TAATA-AAATCAATCTTTATTTTAAAATA
1 -TTTAAAATAAATCAA-TCATACTAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATA
783208 AATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA
63 AATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA
783252 TTTTAAAATA
Statistics
Matches: 349, Mismatches: 14, Indels: 22
0.91 0.04 0.06
Matches are distributed among these distances:
132 1 0.00
133 150 0.43
134 97 0.28
135 66 0.19
136 6 0.02
138 2 0.01
139 3 0.01
140 22 0.06
141 2 0.01
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (133 bp):
TTTAAAATAAATCAATCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAAT
CAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCAA
TAT
Found at i:782906 original size:22 final size:23
Alignment explanation
Indices: 782831--782905 Score: 82
Period size: 22 Copynumber: 3.2 Consensus size: 23
782821 ATAAATTATT
782831 TAAAATAAATCAATCCATAC-AA
1 TAAAATAAATCAATCCATACTAA
**
782853 CTACAATAATAAATCAATCCATA-TTT
1 -T--AA-AATAAATCAATCCATACTAA
782879 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATACTAA
782902 TAAA
1 TAAA
782906 TTATTTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.37
23 8 0.19
25 3 0.07
26 16 0.37
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAAATAAATCAATCCATACTAA
Found at i:782935 original size:22 final size:22
Alignment explanation
Indices: 782909--782951 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
782899 TAATAAATTA
782909 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
782931 TTTAAAATAAATTAATCCATA
1 TTTAAAATAAATCAATCCATA
782952 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:782960 original size:22 final size:22
Alignment explanation
Indices: 782911--782959 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
782901 ATAAATTATT
**
782911 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
782933 TAAAATAAATTAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
782956 TAAA
1 TAAA
782960 TTATTTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:783010 original size:79 final size:80
Alignment explanation
Indices: 782914--783062 Score: 264
Period size: 79 Copynumber: 1.9 Consensus size: 80
782904 AATTATTTAA
*
782914 AATAAATCAATCCATATTTTAAAATAAATTAATCCATACTAATAAATTATTT-AAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
782978 CCATACAACTACAAT
66 CCATACAACTACAAT
* *
782993 AATAAATCAATCTATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
783058 CCATA
66 CCATA
783063 TTTTAAAATA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
79 49 0.74
80 17 0.26
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.34
Consensus pattern (80 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
CCATACAACTACAAT
Found at i:783039 original size:22 final size:22
Alignment explanation
Indices: 782966--783038 Score: 65
Period size: 22 Copynumber: 3.1 Consensus size: 22
782956 TAAATTATTT
* *
782966 AAATAAATCAATCCATACAACTACA
1 AAATAAATCAATCTATATAA-T--A
**
782991 ATAATAAATCAATCTATATTTTA
1 A-AATAAATCAATCTATATAATA
783014 AAATAAATCAATCTATACTAATA
1 AAATAAATCAATCTATA-TAATA
783037 AA
1 AA
783039 TTATTTAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
25 2 0.05
26 15 0.38
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (22 bp):
AAATAAATCAATCTATATAATA
Found at i:783068 original size:22 final size:22
Alignment explanation
Indices: 783042--783084 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
783032 TAATAAATTA
783042 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
783064 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
783085 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:783093 original size:22 final size:22
Alignment explanation
Indices: 783044--783092 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
783034 ATAAATTATT
**
783044 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
783066 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
783089 TAAA
1 TAAA
783093 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:783147 original size:22 final size:22
Alignment explanation
Indices: 783098--783146 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
783088 ATAAATTATT
**
783098 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
783120 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCCATA-TAA
783143 TAAA
1 TAAA
783147 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:783237 original size:32 final size:34
Alignment explanation
Indices: 783195--783420 Score: 158
Period size: 32 Copynumber: 6.5 Consensus size: 34
783185 AAATCAATCT
783195 TTATTTTAAAATAAATCAATCCATACT-AATAAA
1 TTATTTTAAAATAAATCAATCCATACTAAATAAA
*
783228 TTA-TTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTATTTTAAAATAAATCAATCCATA--CT-AAATAAA
* * * ** * * *
783264 TTAATTCATACTAATAAAT-TATTTAAAATAAATCAA
1 TT-ATT-TTA-AAATAAATCAATCCATACTAAATAAA
783300 TCCATATTTTAAAATAAATCAATCCATACT-AATAAA
1 T---TATTTTAAAATAAATCAATCCATACTAAATAAA
* * ** * * *
783336 TTA-TTTAAAATAAATTATTTTAAAATAAATCAAT
1 TTATTTTAAAATAAATCAATCCATACTAAAT-AAA
783370 TCATATTTTAAAATAAATCAATCCATACT-AATAAA
1 T--TATTTTAAAATAAATCAATCCATACTAAATAAA
783405 TTATTTTAAAATAAAT
1 TTATTTTAAAATAAAT
783421 TTTTTAAAAT
Statistics
Matches: 145, Mismatches: 31, Indels: 34
0.69 0.15 0.16
Matches are distributed among these distances:
32 38 0.26
33 23 0.16
34 4 0.03
35 3 0.02
36 33 0.23
37 26 0.18
38 4 0.03
39 7 0.05
40 7 0.05
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (34 bp):
TTATTTTAAAATAAATCAATCCATACTAAATAAA
Found at i:783257 original size:22 final size:22
Alignment explanation
Indices: 783231--783273 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
783221 TAATAAATTA
783231 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
* *
783253 TTTAAAATAAATTAATTCATA
1 TTTAAAATAAATCAATCCATA
783274 CTAATAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:783261 original size:54 final size:54
Alignment explanation
Indices: 783185--783350 Score: 296
Period size: 54 Copynumber: 3.1 Consensus size: 54
783175 TACAATAATA
**
783185 AAATCAATCTTTATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
1 AAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
* *
783239 AAATCAATCCATATTTTAAAATAAATTAATTCATACTAATAAATTATTTAAAAT
1 AAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
783293 AAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
1 AAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
783347 AAAT
1 AAAT
783351 TATTTTAAAA
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (54 bp):
AAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
Found at i:783310 original size:22 final size:22
Alignment explanation
Indices: 783285--783396 Score: 116
Period size: 22 Copynumber: 5.0 Consensus size: 22
783275 TAATAAATTA
783285 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
783307 TTTAAAATAAATCAATCCATACT
1 TTTAAAATAAATCAATCCATA-T
** * ** * **
783330 AATAAATTATTTAAAATAAATTAT
1 TTTAAAATAAAT-CAATCCA-TAT
*
783354 TTTAAAATAAATCAATTCATAT
1 TTTAAAATAAATCAATCCATAT
783376 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
783397 CTAATAAATT
Statistics
Matches: 70, Mismatches: 17, Indels: 6
0.75 0.18 0.06
Matches are distributed among these distances:
22 44 0.63
23 12 0.17
24 12 0.17
25 2 0.03
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.38
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:783359 original size:15 final size:15
Alignment explanation
Indices: 783330--783569 Score: 286
Period size: 15 Copynumber: 15.5 Consensus size: 15
783320 AATCCATACT
783330 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
783344 AATAAATTATTTTAA
1 AATAAATTATTTTAA
783359 AATAAATCAATTCATATTTTAA
1 AAT--A--AA-T--TATTTTAA
* ** *
783381 AATAAATCAATCCATACT
1 AATAAAT-TAT-TTTA-A
783399 AATAAATTATTTTAA
1 AATAAATTATTTTAA
783414 AATAAATT-TTTTAA
1 AATAAATTATTTTAA
*
783428 AATAAATTATTTTAT
1 AATAAATTATTTTAA
*
783443 AATAAATTATTTTAT
1 AATAAATTATTTTAA
*
783458 AATAAATTATTTTAT
1 AATAAATTATTTTAA
783473 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
783488 AATAAATTATTTTAT
1 AATAAATTATTTTAA
*
783503 AATAAATTATTTTAT
1 AATAAATTATTTTAA
*
783518 AATAAATTATTTTAT
1 AATAAATTATTTTAA
783533 AATAAATTATTTTAA
1 AATAAATTATTTTAA
783548 AATAAATTATTTTAA
1 AATAAATTATTTTAA
783563 AATAAAT
1 AATAAAT
783570 AACCTTATTA
Statistics
Matches: 202, Mismatches: 13, Indels: 21
0.86 0.06 0.09
Matches are distributed among these distances:
14 23 0.11
15 145 0.72
16 4 0.02
17 6 0.03
18 9 0.04
19 2 0.01
20 2 0.01
22 11 0.05
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:784153 original size:16 final size:16
Alignment explanation
Indices: 784132--784170 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
784122 GGTATTACTC
784132 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
* *
784148 GACCTGTTTTTAACTT
1 GACCTGTTTTCAACCT
784164 GACCTGT
1 GACCTGT
784171 AAATAATCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (16 bp):
GACCTGTTTTCAACCT
Found at i:784440 original size:14 final size:14
Alignment explanation
Indices: 784418--784464 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
784408 CGCAAAGGAA
*
784418 AATTAATATAGTTT
1 AATTTATATAGTTT
784432 AATTTATATA----
1 AATTTATATAGTTT
784442 AA-TTATATAGTTT
1 AATTTATATAGTTT
784455 AATTTATATA
1 AATTTATATA
784465 AAGAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
13 2 0.07
14 16 0.59
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
AATTTATATAGTTT
Found at i:784451 original size:23 final size:24
Alignment explanation
Indices: 784417--784466 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
784407 ACGCAAAGGA
784417 AAATTAATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
784441 AAATT-ATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
784464 AAA
1 AAA
784467 GAAAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
AAATTAATATAGTTTAATTTATAT
Found at i:784994 original size:20 final size:20
Alignment explanation
Indices: 784969--785013 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
784959 TATATTCTCA
784969 AAATTTCCTAATTTCCCTCT
1 AAATTTCCTAATTTCCCTCT
*
784989 AAATTTCCTAATTTCTCTCT
1 AAATTTCCTAATTTCCCTCT
785009 AAATT
1 AAATT
785014 CCCAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (20 bp):
AAATTTCCTAATTTCCCTCT
Found at i:785093 original size:2 final size:2
Alignment explanation
Indices: 785086--785134 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
785076 ACTTTGAATA
*
785086 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
785128 AT AT AT A
1 AT AT AT A
785135 ATTAAACATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:786137 original size:2 final size:2
Alignment explanation
Indices: 786130--786205 Score: 52
Period size: 2 Copynumber: 38.0 Consensus size: 2
786120 TAATGCATAC
* *
786130 AT AT AT AT ACT AT AT -T A- AT AT AA ACT AT AT AT -T TT AT AT AGT
1 AT AT AT AT A-T AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT A-T
* *
786172 TT AT AC AT AT AT AGT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT
786206 TAATATAAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
1 4 0.07
2 49 0.83
3 6 0.10
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:786204 original size:9 final size:9
Alignment explanation
Indices: 786130--786205 Score: 50
Period size: 9 Copynumber: 8.2 Consensus size: 9
786120 TAATGCATAC
786130 ATATA-TAT
1 ATATATTAT
786138 ACTATATTAAT
1 A-TATATT-AT
* *
786149 ATAAACTAT
1 ATATATTAT
*
786158 ATATTTTAT
1 ATATATTAT
786167 ATAGT-TTAT
1 ATA-TATTAT
*
786176 ACATA-TAT
1 ATATATTAT
786184 AGTATATATAT
1 A-TATAT-TAT
786195 ATATATTAT
1 ATATATTAT
786204 AT
1 AT
786206 TAATATAAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
8 6 0.11
9 29 0.55
10 11 0.21
11 7 0.13
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.49
Consensus pattern (9 bp):
ATATATTAT
Found at i:786212 original size:13 final size:15
Alignment explanation
Indices: 786130--786205 Score: 64
Period size: 15 Copynumber: 5.0 Consensus size: 15
786120 TAATGCATAC
*
786130 ATATATATACTATAT
1 ATATATATAGTATAT
* *
786145 -TAATATAAACTATAT
1 AT-ATATATAGTATAT
* *
786160 ATTTTATATAGTTTAT
1 A-TATATATAGTATAT
*
786176 ACATATATAGTATAT
1 ATATATATAGTATAT
*
786191 ATATATATATTATAT
1 ATATATATAGTATAT
786206 TAATATAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
14 1 0.02
15 36 0.75
16 10 0.21
17 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.49
Consensus pattern (15 bp):
ATATATATAGTATAT
Found at i:786291 original size:13 final size:13
Alignment explanation
Indices: 786259--786390 Score: 91
Period size: 13 Copynumber: 10.3 Consensus size: 13
786249 ATATACTTTT
786259 TATAGTTTATACATA
1 TATAGTTTAT--ATA
786274 TATAGTTTATATA
1 TATAGTTTATATA
*
786287 CATAGTTTATATA
1 TATAGTTTATATA
* *
786300 TATAGTTCACATAAA
1 TATAGTT--TATATA
* *
786315 CATAATTTATATA
1 TATAGTTTATATA
786328 TATAGTTTATA-A
1 TATAGTTTATATA
786340 TA-A--TTATATA
1 TATAGTTTATATA
* *
786350 GTTTA--TAATATAA
1 -TATAGTTTATAT-A
786363 TATAGTTTATATA
1 TATAGTTTATATA
786376 TAT--TTTATATA
1 TATAGTTTATATA
786387 TATA
1 TATA
786391 TTATTTTTTT
Statistics
Matches: 94, Mismatches: 14, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
9 5 0.05
10 1 0.01
11 13 0.14
12 12 0.13
13 39 0.41
14 5 0.05
15 19 0.20
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.48
Consensus pattern (13 bp):
TATAGTTTATATA
Found at i:786291 original size:28 final size:26
Alignment explanation
Indices: 786260--786339 Score: 97
Period size: 28 Copynumber: 2.9 Consensus size: 26
786250 TATACTTTTT
*
786260 ATAGTTTATACATATATAGTTTATATAC
1 ATAGTTTAT--ATATATAGTTTATAAAC
*
786288 ATAGTTTATATATATAGTTCACATAAAC
1 ATAGTTTATATATATAGTT--TATAAAC
*
786316 ATAATTTATATATATAGTTTATAA
1 ATAGTTTATATATATAGTTTATAA
786340 TAATTATATA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
26 14 0.30
28 32 0.70
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (26 bp):
ATAGTTTATATATATAGTTTATAAAC
Found at i:786349 original size:18 final size:17
Alignment explanation
Indices: 786326--786384 Score: 82
Period size: 18 Copynumber: 3.4 Consensus size: 17
786316 ATAATTTATA
786326 TATATAGTTTATAATAAT
1 TATATAGTTTATAAT-AT
786344 TATATAGTTTATAATAT
1 TATATAGTTTATAATAT
*
786361 AATATAGTTTATATATAT
1 TATATAGTTTATA-ATAT
*
786379 TTTATA
1 TATATA
786385 TATATATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
17 14 0.38
18 23 0.62
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (17 bp):
TATATAGTTTATAATAT
Found at i:787067 original size:16 final size:16
Alignment explanation
Indices: 787046--787085 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
787036 ATTTTTACCT
* *
787046 GAACTGACATTGATCC
1 GAACTGAAAATGATCC
787062 GAACTGAAAATGATCC
1 GAACTGAAAATGATCC
*
787078 GACCTGAA
1 GAACTGAA
787086 CCCGATTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (16 bp):
GAACTGAAAATGATCC
Found at i:789288 original size:30 final size:32
Alignment explanation
Indices: 789254--789329 Score: 88
Period size: 33 Copynumber: 2.5 Consensus size: 32
789244 TAAATACTTA
789254 TATTTTATATT-AAT-ATAATTATATAAATAT
1 TATTTTATATTAAATAATAATTATATAAATAT
* * *
789284 TATTTTTTATTAAAATAATATTTATATAATTAT
1 TATTTTATATT-AAATAATAATTATATAAATAT
789317 TA-TTTAT-TTAAAT
1 TATTTTATATTAAAT
789330 TTATTAATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 14 0.36
31 2 0.05
32 7 0.18
33 16 0.41
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (32 bp):
TATTTTATATTAAATAATAATTATATAAATAT
Found at i:789358 original size:20 final size:20
Alignment explanation
Indices: 789333--789371 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
789323 TTTAAATTTA
789333 TTAATTA-ATTATTTTTTGTG
1 TTAATTATA-TATTTTTTGTG
789353 TTAATTATATATTTTTTGT
1 TTAATTATATATTTTTTGT
789372 CTATAGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.67
Consensus pattern (20 bp):
TTAATTATATATTTTTTGTG
Found at i:791705 original size:34 final size:34
Alignment explanation
Indices: 791666--791753 Score: 110
Period size: 34 Copynumber: 2.7 Consensus size: 34
791656 TTAAATGATT
*
791666 TTAAAATATAAATTATAGTATTTGAAAATTAAAA
1 TTAAAATATAAATTATAGTATTCGAAAATTAAAA
* * *
791700 TTAAAATACAAATTATAGTATTCGAAATTTAACA
1 TTAAAATATAAATTATAGTATTCGAAAATTAAAA
*
791734 TT-AAAT-TAAATT-TAATATTC
1 TTAAAATATAAATTATAGTATTC
791754 CAATTGAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
31 7 0.15
32 5 0.10
33 4 0.08
34 32 0.67
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (34 bp):
TTAAAATATAAATTATAGTATTCGAAAATTAAAA
Found at i:791781 original size:19 final size:19
Alignment explanation
Indices: 791718--791796 Score: 69
Period size: 19 Copynumber: 4.3 Consensus size: 19
791708 CAAATTATAG
*
791718 TATTCGAAATTTAACATTA
1 TATTCGAAATTTAAAATTA
* *
791737 AATT--AAATTTAATATTCCA
1 TATTCGAAATTTAAAATT--A
791756 -ATT-GAAATTTAAAATTA
1 TATTCGAAATTTAAAATTA
791773 TATTCGAAA-TTAAAAGTTA
1 TATTCGAAATTTAAAA-TTA
791792 TATTC
1 TATTC
791797 TAATTATAGT
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
17 12 0.24
18 12 0.24
19 27 0.53
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.42
Consensus pattern (19 bp):
TATTCGAAATTTAAAATTA
Found at i:792041 original size:63 final size:63
Alignment explanation
Indices: 791955--792079 Score: 214
Period size: 63 Copynumber: 2.0 Consensus size: 63
791945 TTTAAAGTCA
* **
791955 CAACCAACTTATCTCTTAACATTTATTCAATTTATCCATAGTATTTTATCCAATTTATTCAAG
1 CAACCAACTTATCACTTAACATTTATTCAATTTATCCATAACATTTTATCCAATTTATTCAAG
*
792018 CAACCAACTTATCACTTCACATTTATTCAATTTATCCATAACATTTTATCCAATTTATTCAA
1 CAACCAACTTATCACTTAACATTTATTCAATTTATCCATAACATTTTATCCAATTTATTCAA
792080 ACTTTACATA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.34, C:0.22, G:0.02, T:0.42
Consensus pattern (63 bp):
CAACCAACTTATCACTTAACATTTATTCAATTTATCCATAACATTTTATCCAATTTATTCAAG
Found at i:792805 original size:136 final size:137
Alignment explanation
Indices: 792219--792829 Score: 845
Period size: 138 Copynumber: 4.5 Consensus size: 137
792209 CTCTGCGTCT
* *
792219 CTGGGGAATATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCG
1 CTGGGG-ACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCG
** *
792284 C-CCCCCGAGAACGCGCTTTCACCACTTTATCAAGTCCCCT-AAAAATAATAGGTACGGACATGA
65 CACCCCCGAGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAAAAATAATAGGTACTGACATGA
792347 ATAGTTCTC
130 ATAGTTC-C
** * * * *
792356 C-GGGAGACAAAAATGACATAATAGGGCAATGATAATATATTCTCTGACAAAATAATAAAAGGTG
1 CTGGG-GACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCG
* * * * * *
792420 CGCCCCCGGGAACGCGTTTTCACCACTTTGCCAAGTCCTCTCAGAAATAATAGGTACTAACATGA
65 CACCCCCGAGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAAAAATAATAGGTACTGACATGA
792485 ATAGTTCC
130 ATAGTTCC
*
792493 CCGGGAGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCG
1 CTGGG-GACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCG
* * * *
792558 CACTCCCGGGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAGAAATAATAGGTACTGATATGA
65 CACCCCCGAGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAAAAATAATAGGTACTGACATGA
792623 ATAGTTCC
130 ATAGTTCC
* * * *
792631 CGGGGGACAT-AGTGACATAATAGGACAATGATAACATATTCTCTGACAAAATAATGGAAGGTGC
1 CTGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCGC
* * * *
792695 -CCCCCGAAAATGCGCTTTCACCACTTTGCCAAGTCTCCTAAAAAATAATAGGTACTGACATGAA
66 ACCCCCGAGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAAAAATAATAGGTACTGACATGAA
*
792759 TAGTTTC
131 TAGTTCC
*
792766 CTGGGGACATGACTGACATAATAGGGCAATGATAACATATTCTCTGTGACAAAATAATGAAAGG
1 CTGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC--TGACAAAATAATGAAAGG
792830 AGCTTCTCCA
Statistics
Matches: 422, Mismatches: 45, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
135 71 0.17
136 136 0.32
137 43 0.10
138 172 0.41
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.23
Consensus pattern (137 bp):
CTGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCGC
ACCCCCGAGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAAAAATAATAGGTACTGACATGAA
TAGTTCC
Found at i:792818 original size:274 final size:273
Alignment explanation
Indices: 792219--792829 Score: 897
Period size: 274 Copynumber: 2.2 Consensus size: 273
792209 CTCTGCGTCT
* *
792219 CTGGGGAATATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCG
1 CTGGGG-ACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCG
*
792284 CCCCCCGAGAACGCGCTTTCACCACTTTATCAAGTCCCCTAAAAATAATAGGTACGGACATGAAT
65 CCCCCCGAGAACGCGCTTTCACCACTTTACCAAGTCCCCTAAAAATAATAGGTACGGACATGAAT
* *
792349 AGTTCTCCGGGAGACAAAAATGACATAATAGGGCAATGATAATATATTCTCTGACAAAATAATAA
130 AGTTCTCCGGGAGACAAAAATGACATAATAGGACAATGATAACATATTCTCTGACAAAATAATAA
** * * *
792414 AAGGTGCGCCCCCGGGAACGCGTTTTCACCACTTTGCCAAGTCCTCTCAGAAATAATAGGTACTA
195 AAGGTGCGCCCCCGAAAACGCGCTTTCACCACTTTGCCAAGTCCTCTAAAAAATAATAGGTACTA
792479 ACATGAATAGTTCC
260 ACATGAATAGTTCC
*
792493 CCGGGAGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCG
1 CTGGG-GACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCG
* * * * * *
792558 CACTCCCGGGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAGAAATAATAGGTACTGATATGA
65 C-CCCCCGAGAACGCGCTTTCACCACTTTACCAAGTCCCCT-AAAAATAATAGGTACGGACATGA
* * *
792623 ATAGTTC-CCGGGGGAC-ATAGTGACATAATAGGACAATGATAACATATTCTCTGACAAAATAAT
128 ATAGTTCTCCGGGAGACAAAAATGACATAATAGGACAATGATAACATATTCTCTGACAAAATAAT
** *
792686 GGAAGGTGC-CCCCCGAAAATGCGCTTTCACCACTTTGCCAAGT-CTCCTAAAAAATAATAGGTA
193 AAAAGGTGCGCCCCCGAAAACGCGCTTTCACCACTTTGCCAAGTCCT-CTAAAAAATAATAGGTA
* *
792749 CTGACATGAATAGTTTC
257 CTAACATGAATAGTTCC
*
792766 CTGGGGACATGACTGACATAATAGGGCAATGATAACATATTCTCTGTGACAAAATAATGAAAGG
1 CTGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC--TGACAAAATAATGAAAGG
792830 AGCTTCTCCA
Statistics
Matches: 304, Mismatches: 27, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
272 40 0.13
273 64 0.21
274 129 0.42
275 44 0.14
276 27 0.09
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.23
Consensus pattern (273 bp):
CTGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGAAAGGCGC
CCCCCGAGAACGCGCTTTCACCACTTTACCAAGTCCCCTAAAAATAATAGGTACGGACATGAATA
GTTCTCCGGGAGACAAAAATGACATAATAGGACAATGATAACATATTCTCTGACAAAATAATAAA
AGGTGCGCCCCCGAAAACGCGCTTTCACCACTTTGCCAAGTCCTCTAAAAAATAATAGGTACTAA
CATGAATAGTTCC
Found at i:796058 original size:26 final size:26
Alignment explanation
Indices: 796029--796101 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 26
796019 TTTACTGGTA
* *
796029 ATTTTATAAAATGATTAAT-TATATTT
1 ATTTAATAAAATAATTAATAT-TATTT
*
796055 ATTTAATATAATAATTAATATTATTT
1 ATTTAATAAAATAATTAATATTATTT
* *
796081 A-TT-ATAAAAAAATTATTATTA
1 ATTTAATAAAATAATTAATATTA
796102 ATTTTAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 15 0.38
25 2 0.05
26 22 0.55
27 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (26 bp):
ATTTAATAAAATAATTAATATTATTT
Found at i:796069 original size:22 final size:22
Alignment explanation
Indices: 796044--796087 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
796034 ATAAAATGAT
796044 TAATT-ATATTTATTTAATATAA
1 TAATTAATA-TTATTTAATATAA
*
796066 TAATTAATATTATTTATTATAA
1 TAATTAATATTATTTAATATAA
796088 AAAAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATTAATATTATTTAATATAA
Found at i:796880 original size:18 final size:17
Alignment explanation
Indices: 796841--796881 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
796831 GCCATCTTAA
796841 TAAAAAGAATGTTAATT
1 TAAAAAGAATGTTAATT
796858 TAAAAAGAATGTTAATT
1 TAAAAAGAATGTTAATT
796875 TGAAAAA
1 T-AAAAA
796882 TATTGATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (17 bp):
TAAAAAGAATGTTAATT
Found at i:797587 original size:37 final size:37
Alignment explanation
Indices: 797537--797618 Score: 164
Period size: 37 Copynumber: 2.2 Consensus size: 37
797527 AACAGATTGT
797537 TGGAGGTCGATATAAACAAAAGAAGAAAAGGAAGGAA
1 TGGAGGTCGATATAAACAAAAGAAGAAAAGGAAGGAA
797574 TGGAGGTCGATATAAACAAAAGAAGAAAAGGAAGGAA
1 TGGAGGTCGATATAAACAAAAGAAGAAAAGGAAGGAA
797611 TGGAGGTC
1 TGGAGGTC
797619 ATAAGTCAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.50, C:0.06, G:0.32, T:0.12
Consensus pattern (37 bp):
TGGAGGTCGATATAAACAAAAGAAGAAAAGGAAGGAA
Found at i:800810 original size:14 final size:15
Alignment explanation
Indices: 800791--800892 Score: 56
Period size: 15 Copynumber: 7.1 Consensus size: 15
800781 TTTGTCCGGG
800791 TTATAAATATT-ATA
1 TTATAAATATTAATA
*
800805 TTATAATTATTAATA
1 TTATAAATATTAATA
*
800820 TTAT-ATTA-TAACTA
1 TTATAAATATTAA-TA
* *
800834 TTAT---TGTTATTA
1 TTATAAATATTAATA
*
800846 TTATAACA-ATTAAAA
1 TTATAA-ATATTAATA
*
800861 TTATAATTATTAATA
1 TTATAAATATTAATA
* * *
800876 GTATTATTATTAATA
1 TTATAAATATTAATA
800891 TT
1 TT
800893 GTTTATGTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 15
0.73 0.12 0.16
Matches are distributed among these distances:
12 7 0.10
13 5 0.07
14 20 0.29
15 37 0.54
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
TTATAAATATTAATA
Found at i:800819 original size:20 final size:20
Alignment explanation
Indices: 800796--800870 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
800786 CCGGGTTATA
*
800796 AATATTATATTATAATTATT
1 AATATTATATTATAACTATT
800816 AATATTATATTATAACTATT
1 AATATTATATTATAACTATT
* * *
800836 ATTGTTATTATTATAACAATT
1 AATATTA-TATTATAACTATT
*
800857 AAAATTATAATTAT
1 AATATTAT-ATTAT
800871 TAATAGTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
20 25 0.54
21 21 0.46
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (20 bp):
AATATTATATTATAACTATT
Found at i:800846 original size:3 final size:3
Alignment explanation
Indices: 800798--800892 Score: 50
Period size: 3 Copynumber: 32.3 Consensus size: 3
800788 GGGTTATAAA
* * * * *
800798 TAT TA- TAT TAT AAT TAT TAA TAT TA- TAT TAT AAC TAT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * * *
800844 TAT TAT AAC AAT TAA AAT TAT AAT TAT TAA TAG TAT TAT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
800892 T
1 T
800893 GTTTATGTTT
Statistics
Matches: 65, Mismatches: 25, Indels: 4
0.69 0.27 0.04
Matches are distributed among these distances:
2 4 0.06
3 61 0.94
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (3 bp):
TAT
Found at i:804194 original size:12 final size:12
Alignment explanation
Indices: 804179--804224 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
804169 TTGTATTTGT
804179 ATTTGCATTCAC
1 ATTTGCATTCAC
**
804191 ATTTGCATTTTC
1 ATTTGCATTCAC
*
804203 ATTTTCATTCAC
1 ATTTGCATTCAC
804215 ATTTGCATTC
1 ATTTGCATTC
804225 TTATTAGCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.50
Consensus pattern (12 bp):
ATTTGCATTCAC
Found at i:804200 original size:24 final size:24
Alignment explanation
Indices: 804166--804223 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
804156 ACACCTTGTG
*
804166 CATTTGTATTTGT-ATTTGCATTCA
1 CATTTGCATTT-TCATTTGCATTCA
*
804190 CATTTGCATTTTCATTTTCATTCA
1 CATTTGCATTTTCATTTGCATTCA
804214 CATTTGCATT
1 CATTTGCATT
804224 CTTATTAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 1 0.03
24 30 0.97
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.53
Consensus pattern (24 bp):
CATTTGCATTTTCATTTGCATTCA
Found at i:810671 original size:42 final size:42
Alignment explanation
Indices: 810609--810689 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
810599 GAAGTAATCC
**
810609 CATCAGTAAGTCTTTCGAGCACGATTCTTAAATCCTTCGTGT
1 CATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTCGTGT
* *
810651 CATCAGTAAGTCTTTTGAGCATGATGATTAAATCCTTCG
1 CATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTCG
810690 AGTAATTTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (42 bp):
CATCAGTAAGTCTTTCGAGCACGATGATTAAATCCTTCGTGT
Found at i:810703 original size:122 final size:122
Alignment explanation
Indices: 810486--810741 Score: 422
Period size: 122 Copynumber: 2.1 Consensus size: 122
810476 GTCCTTCGGG
* * * *
810486 CCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTGGGGTCTTCAGTAAGTCTTTCGAGCAT
1 CCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCGGGTCATCAGTAAGTCTTTCGAGCAT
* *
810551 GATGATTAAATCCTTCGGGTAATTTGTAAGCCTTCACGGAAGAGTAGTGAAGTAATC
66 GATGATTAAATCCTTCGAGTAATTTGTAAGCCTTCACGGAAGAGTAGTGAAGCAATC
* * *
810608 CCATCAGTAAGTCTTTCGAGCACGATTCTTAAATCCTTCGTGTCATCAGTAAGTCTTTTGAGCAT
1 CCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCGGGTCATCAGTAAGTCTTTCGAGCAT
*
810673 GATGATTAAATCCTTCGAGTAATTTGTAAGCCTTCATGGAAGAGTAGTGAAGCAATC
66 GATGATTAAATCCTTCGAGTAATTTGTAAGCCTTCACGGAAGAGTAGTGAAGCAATC
810730 CCATCAGTAAGT
1 CCATCAGTAAGT
810742 GCCATCAGTA
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
122 124 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (122 bp):
CCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCGGGTCATCAGTAAGTCTTTCGAGCAT
GATGATTAAATCCTTCGAGTAATTTGTAAGCCTTCACGGAAGAGTAGTGAAGCAATC
Found at i:810748 original size:13 final size:13
Alignment explanation
Indices: 810730--810754 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
810720 TGAAGCAATC
810730 CCATCAGTAAGTG
1 CCATCAGTAAGTG
810743 CCATCAGTAAGT
1 CCATCAGTAAGT
810755 CTTTCGAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (13 bp):
CCATCAGTAAGTG
Found at i:810822 original size:22 final size:22
Alignment explanation
Indices: 810750--810824 Score: 57
Period size: 22 Copynumber: 3.5 Consensus size: 22
810740 GTGCCATCAG
*
810750 TAAGTCTTTCGAGCATGATGAT
1 TAAGTCTTCCGAGCATGATGAT
* ** * *
810772 GAAGTCTTTTGAACCATCA-G--
1 TAAGTCTTCCG-AGCATGATGAT
*
810792 TAAGCCTTCCGAGCATGATGAT
1 TAAGTCTTCCGAGCATGATGAT
810814 TAAGTCTTCCG
1 TAAGTCTTCCG
810825 GGCCATCTTA
Statistics
Matches: 38, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
19 5 0.13
20 8 0.21
22 20 0.53
23 5 0.13
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (22 bp):
TAAGTCTTCCGAGCATGATGAT
Found at i:810831 original size:42 final size:42
Alignment explanation
Indices: 810742--810841 Score: 121
Period size: 42 Copynumber: 2.4 Consensus size: 42
810732 ATCAGTAAGT
* * **
810742 GCCATCAGTAAGTCTTTCGAGCATGATGATGAAGTCTTTTGA
1 GCCATCAGTAAGCCTTCCGAGCATGATGATGAAGTCTTCCGA
* * *
810784 ACCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCTTCCGG
1 GCCATCAGTAAGCCTTCCGAGCATGATGATGAAGTCTTCCGA
*
810826 GCCATC-TTAAGCCTTC
1 GCCATCAGTAAGCCTTC
810842 ACGGAAGAGT
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 9 0.18
42 40 0.82
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (42 bp):
GCCATCAGTAAGCCTTCCGAGCATGATGATGAAGTCTTCCGA
Found at i:810879 original size:36 final size:36
Alignment explanation
Indices: 810827--811016 Score: 141
Period size: 36 Copynumber: 5.1 Consensus size: 36
810817 GTCTTCCGGG
* *
810827 CCATCTTAAGCCTTCACGGAAGAGTAGTGATGCAAA
1 CCATATTAAGCCTTCACGGAAGAGTAGTGAAGCAAA
810863 CCATATTAAGCCTTCACGGAAGAGTAGTGAAGCAAA
1 CCATATTAAGCCTTCACGGAAGAGTAGTGAAGCAAA
* * **** **
810899 CCATCAGTAAGCCTTC-CGAGCATGATGATTAAGTTCTCCAGG
1 CCAT-ATTAAGCCTTCACG-G-A--A-GAGT-AGTGAAGCAAA
* * * *
810941 CCATCTTAAGCATTCACGGAAGAGTAATGAAGCTAA
1 CCATATTAAGCCTTCACGGAAGAGTAGTGAAGCAAA
* * *
810977 CCATTTTAAGCCTTCTCGGAAGAGT-GTTGGAGCAAA
1 CCATATTAAGCCTTCACGGAAGAGTAG-TGAAGCAAA
811013 CCAT
1 CCAT
811017 CATATCATCA
Statistics
Matches: 117, Mismatches: 28, Indels: 18
0.72 0.17 0.11
Matches are distributed among these distances:
36 76 0.65
37 14 0.12
38 2 0.02
40 2 0.02
41 12 0.10
42 11 0.09
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (36 bp):
CCATATTAAGCCTTCACGGAAGAGTAGTGAAGCAAA
Found at i:810986 original size:114 final size:114
Alignment explanation
Indices: 810783--811018 Score: 368
Period size: 114 Copynumber: 2.1 Consensus size: 114
810773 AAGTCTTTTG
* *
810783 AACCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCTTCCGGGCCATCTTAAGCCTTCACGGAA
1 AACCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCTTCCAGGCCATCTTAAGCATTCACGGAA
* *
810848 GAGTAGTGATGCAAACCATATTAAGCCTTCACGGAAGAGTAG-TGAAGCA
66 GAGTAATGAAGCAAACCATATTAAGCCTTCACGGAAGAGT-GTTGAAGCA
810897 AACCATCAGTAAGCCTTCCGAGCATGATGATTAAGT-TCTCCAGGCCATCTTAAGCATTCACGGA
1 AACCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCT-TCCAGGCCATCTTAAGCATTCACGGA
* * * *
810961 AGAGTAATGAAGCTAACCATTTTAAGCCTTCTCGGAAGAGTGTTGGAGCA
65 AGAGTAATGAAGCAAACCATATTAAGCCTTCACGGAAGAGTGTTGAAGCA
811011 AACCATCA
1 AACCATCA
811019 TATCATCAGA
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
113 2 0.02
114 110 0.98
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.24
Consensus pattern (114 bp):
AACCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCTTCCAGGCCATCTTAAGCATTCACGGAA
GAGTAATGAAGCAAACCATATTAAGCCTTCACGGAAGAGTGTTGAAGCA
Found at i:811417 original size:53 final size:53
Alignment explanation
Indices: 811337--811447 Score: 179
Period size: 53 Copynumber: 2.1 Consensus size: 53
811327 TAGTGAAGCG
*
811337 AACCCGTAAGAAGAAGATTGTTCGAGTTCTACTCCCTGAAGTAAGAGGGAGTA
1 AACCCGTAAGAAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTA
* *
811390 AACCCGTAGGCAA-AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTG
1 AACCCGTAAG-AAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTA
811443 AACCC
1 AACCC
811448 ACTGGTCGAA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
53 52 0.96
54 2 0.04
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (53 bp):
AACCCGTAAGAAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTA
Found at i:811460 original size:53 final size:53
Alignment explanation
Indices: 811348--811465 Score: 168
Period size: 53 Copynumber: 2.2 Consensus size: 53
811338 ACCCGTAAGA
* *
811348 AGAAGATTGTTCGAGTTCTACTCCCTGAAGTAAGAGGGAGTAAACCCGTAGGC
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTAAACCCCTAGGC
* *
811401 AAAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTGAACCCACT-GGTC
1 AGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTAAACCC-CTAGG-C
811455 -GAAGATTGTTC
1 AGAAGATTGTTC
811466 AAAGAAGAGG
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
53 56 0.97
54 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (53 bp):
AGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTAAACCCCTAGGC
Found at i:811632 original size:14 final size:15
Alignment explanation
Indices: 811613--811646 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
811603 TTTGTCCGGG
811613 TTATAAATATT-ATA
1 TTATAAATATTAATA
*
811627 TTATAATTATTAATA
1 TTATAAATATTAATA
811642 TTATA
1 TTATA
811647 TTATAACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTATAAATATTAATA
Done.