Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007907.1 Hibiscus syriacus cultivar Beakdansim tig00110301_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135996
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Found at i:801 original size:2 final size:2
Alignment explanation
Indices: 794--820 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
784 ACTAAAGTCC
794 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
821 TAAATCTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18394 original size:23 final size:23
Alignment explanation
Indices: 18368--18427 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 23
18358 ATTAGAGTTT
18368 TTTTAATATAATAATATTTTTAA
1 TTTTAATATAATAATATTTTTAA
*
18391 TTTT-TTA-AAT-ATAATTTTTAA
1 TTTTAATATAATAAT-ATTTTTAA
*
18412 ATTTAATATAA-AATAT
1 TTTTAATATAATAATAT
18428 AATATTCGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 9
0.71 0.07 0.21
Matches are distributed among these distances:
20 2 0.07
21 14 0.47
22 6 0.20
23 8 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTTAATATAATAATATTTTTAA
Found at i:21774 original size:19 final size:19
Alignment explanation
Indices: 21724--21774 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
21714 TAATATTTAA
*
21724 AAATAAAATATAATTTTTTT
1 AAATATAAT-TAATTTTTTT
**
21744 AAATATTCTTAATTTTTATT
1 AAATATAATTAATTTTT-TT
21764 AAA-ATAATTAA
1 AAATATAATTAA
21775 ATATTATTGC
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATATAATTAATTTTTTT
Found at i:21975 original size:34 final size:36
Alignment explanation
Indices: 21931--22032 Score: 163
Period size: 34 Copynumber: 2.9 Consensus size: 36
21921 TTTCGTCCTA
*
21931 CTAGGATTCAAACTCCTAAAAATATGATAGAA-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
*
21966 -TAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
22001 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
22033 GTTATACTAT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
34 29 0.48
35 3 0.05
37 29 0.48
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (36 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
Found at i:22056 original size:37 final size:37
Alignment explanation
Indices: 21929--22066 Score: 156
Period size: 37 Copynumber: 3.8 Consensus size: 37
21919 TTTTTCGTCC
* *
21929 TACTAGGATTCAAACTCCTAAAAATATGATAGAATT-
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTA
*
21965 T--TAGGATTCAAACTCCTAAAAATAGGATAAAATTT
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTA
* * *
22000 TGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTTA
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTA
** * * *
22037 TACTATTATTTAAATTCCTAAAGATAGGAT
1 TACTAGGATTCAAACTCCTAAAAATAGGAT
22067 CCACAAGCAC
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
34 31 0.35
35 1 0.01
36 1 0.01
37 55 0.62
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (37 bp):
TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTA
Found at i:22431 original size:33 final size:32
Alignment explanation
Indices: 22393--22461 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 32
22383 AAATCATTTT
*
22393 TTTCCTACTT-TATTATTCTTGTATGTATATATG
1 TTTCCTA-TTATATTATTC-TATATGTATATATG
*
22426 TTTCCTATTAATTTTATTCTATATGTATATATG
1 TTTCCTATT-ATATTATTCTATATGTATATATG
22459 TTT
1 TTT
22462 TTTTTATTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 2 0.06
33 23 0.72
34 7 0.22
ACGTcount: A:0.23, C:0.10, G:0.07, T:0.59
Consensus pattern (32 bp):
TTTCCTATTATATTATTCTATATGTATATATG
Found at i:22484 original size:35 final size:33
Alignment explanation
Indices: 22414--22490 Score: 82
Period size: 35 Copynumber: 2.3 Consensus size: 33
22404 ATTATTCTTG
* *
22414 TATGTATATATGTTTCCTATTAATTTTATTCTA
1 TATGTATATATGTTTCCTATTAATGTTATTATA
** *
22447 TATGTATATATGTTTTTTTTATTAGTGTTATTATA
1 TATGTATATATG--TTTCCTATTAATGTTATTATA
*
22482 TATATATAT
1 TATGTATAT
22491 TTATATATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
33 12 0.33
35 24 0.67
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.60
Consensus pattern (33 bp):
TATGTATATATGTTTCCTATTAATGTTATTATA
Found at i:22584 original size:20 final size:20
Alignment explanation
Indices: 22559--22596 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22549 TTTATTATTA
22559 TTTTACTTATATATATATGC
1 TTTTACTTATATATATATGC
* *
22579 TTTTACTTTTTTATATAT
1 TTTTACTTATATATATAT
22597 TTTACTCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTACTTATATATATATGC
Found at i:22628 original size:16 final size:18
Alignment explanation
Indices: 22607--22641 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
22597 TTTACTCATT
22607 TATTTAT-CTAT-TTTTA
1 TATTTATCCTATATTTTA
22623 TATTTATCCTATATTTTA
1 TATTTATCCTATATTTTA
22641 T
1 T
22642 GTTTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 4 0.24
18 6 0.35
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTATCCTATATTTTA
Found at i:25856 original size:16 final size:16
Alignment explanation
Indices: 25830--25898 Score: 53
Period size: 16 Copynumber: 4.6 Consensus size: 16
25820 AGATCCAATC
25830 AAGAACAAAAAAG-AA
1 AAGAACAAAAAAGCAA
25845 AAGAAGCAAAAAAGC-A
1 AAGAA-CAAAAAAGCAA
25861 AA-AA-AAAAAA-C-A
1 AAGAACAAAAAAGCAA
* *
25873 AAGAA-AAAAGAGAAA
1 AAGAACAAAAAAGCAA
25888 CAAGAACAAAA
1 -AAGAACAAAA
25899 GGAAAAAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
12 4 0.09
13 13 0.29
15 8 0.18
16 16 0.36
17 4 0.09
ACGTcount: A:0.78, C:0.09, G:0.13, T:0.00
Consensus pattern (16 bp):
AAGAACAAAAAAGCAA
Found at i:25879 original size:24 final size:24
Alignment explanation
Indices: 25835--25882 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
25825 CAATCAAGAA
* *
25835 CAAAAAAGAAAAGAAGCAAAAAAG
1 CAAAAAAAAAAAAAAGCAAAAAAG
25859 CAAAAAAAAAAACAAAG-AAAAAAG
1 CAAAAAAAAAAA-AAAGCAAAAAAG
25883 AGAAACAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.79, C:0.08, G:0.12, T:0.00
Consensus pattern (24 bp):
CAAAAAAAAAAAAAAGCAAAAAAG
Found at i:25880 original size:25 final size:25
Alignment explanation
Indices: 25836--25915 Score: 72
Period size: 25 Copynumber: 3.1 Consensus size: 25
25826 AATCAAGAAC
* *
25836 AAAAAAGAAAAGAAGCAAAAAAGCAAA
1 AAAAAAAAAAAGAA--AAAAGAGCAAA
25863 AAAAAAAACAAAGAAAAAAGAG-AAA
1 AAAAAAAA-AAAGAAAAAAGAGCAAA
* * *
25888 CAAGAACAAAAGGAAAAAAGAGCAAA
1 -AAAAAAAAAAAGAAAAAAGAGCAAA
25914 AA
1 AA
25916 TCAAAAAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
25 17 0.38
26 15 0.33
27 7 0.16
28 6 0.13
ACGTcount: A:0.78, C:0.07, G:0.15, T:0.00
Consensus pattern (25 bp):
AAAAAAAAAAAGAAAAAAGAGCAAA
Found at i:25903 original size:16 final size:17
Alignment explanation
Indices: 25868--25914 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
25858 GCAAAAAAAA
25868 AAACAAAGAA-AAAAGAG
1 AAAC-AAGAACAAAAGAG
25885 AAACAAGAACAAAAG-G
1 AAACAAGAACAAAAGAG
* *
25901 AAAAAAGAGCAAAA
1 AAACAAGAACAAAA
25915 ATCAAAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.74, C:0.09, G:0.17, T:0.00
Consensus pattern (17 bp):
AAACAAGAACAAAAGAG
Found at i:26591 original size:22 final size:22
Alignment explanation
Indices: 26566--26614 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
26556 CCATCAATCT
* *
26566 TTTGAGCATCCAATGTCAAACC
1 TTTGAGCATCAAATGCCAAACC
26588 TTTGAGCATCAAATGCCAAACC
1 TTTGAGCATCAAATGCCAAACC
26610 TTTGA
1 TTTGA
26615 CCAAACACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (22 bp):
TTTGAGCATCAAATGCCAAACC
Found at i:27053 original size:18 final size:18
Alignment explanation
Indices: 27030--27065 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
27020 TCAACATCAA
* *
27030 ATATTGGGGCATTTTTGG
1 ATATTGAGGCATCTTTGG
27048 ATATTGAGGCATCTTTGG
1 ATATTGAGGCATCTTTGG
27066 GGATTCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (18 bp):
ATATTGAGGCATCTTTGG
Found at i:27588 original size:36 final size:36
Alignment explanation
Indices: 27545--27826 Score: 303
Period size: 36 Copynumber: 8.0 Consensus size: 36
27535 ACTATAAGAG
27545 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
*
27581 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* * *
27617 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
27653 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* * * * *
27689 ------ATAT-TTGA-ATATGTTTTCTTTGAAACAAA
1 TTTTGTCTCTCTTGAGACA-GTTTCCCTTGAAACAAA
** * ** * *
27718 TTCCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAG
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAA
*
27755 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* *
27790 TTTTCGTCTATCTTGAGACGGTTTCCCTTGAAACAAA
1 TTTT-GTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
27827 ACCTTTGAAT
Statistics
Matches: 204, Mismatches: 30, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
28 2 0.01
29 19 0.09
30 2 0.01
35 6 0.03
36 141 0.69
37 34 0.17
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.40
Consensus pattern (36 bp):
TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
Found at i:27588 original size:71 final size:72
Alignment explanation
Indices: 27503--27826 Score: 221
Period size: 72 Copynumber: 4.6 Consensus size: 72
27493 GTTTTTCTTA
* * * * * *
27503 AAACAAGA-TTTGTCTCGCTTGAGACCGTTTTCAC-TATAA-GAGTTTTGTCTCTCTTGAGACAG
1 AAACAA-ATTTTGTCTCTCTTGAGACAGTTTTCACTTA-AACAAATTTCGTCTATCTTGAGACAG
27565 TTTCCCTTG
64 TTTCCCTTG
*
27574 AAACAAATTTTGTCTCTCTTGAGACAG-TTTCTCTTGAAACAAATTTCGTCTATCTTGAGACAGT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTT-AAACAAATTTCGTCTATCTTGAGACAGT
27638 TTCCCTTG
65 TTCCCTTG
* * * *
27646 AAATAAATTTTGTCTCTCTTGAGACAG-TTTCCCTTGAAACAAA------ATAT-TTGA-ATATG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTT-AAACAAATTTCGTCTATCTTGAGACA-G
* *
27702 TTTTCTTTG
64 TTTCCCTTG
** * ** * * * *
27711 AAACAAATTCCGTCTCCCTTGAGACAG-TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTT-AAAC-AAATTTCGTCTATCTTGAGACAG
*
27775 TTTCTCTTG
64 TTTCCCTTG
* * *
27784 AAAC-AATTTTCGTCTATCTTGAGAC-GGTTTCCCTTGAAACAAA
1 AAACAAATTTT-GTCTCTCTTGAGACAGTTTTCACTT-AAACAAA
27827 ACCTTTGAAT
Statistics
Matches: 202, Mismatches: 35, Indels: 31
0.75 0.13 0.12
Matches are distributed among these distances:
64 2 0.01
65 45 0.22
66 5 0.02
70 6 0.03
71 26 0.13
72 79 0.39
73 37 0.18
74 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (72 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTTAAACAAATTTCGTCTATCTTGAGACAGTT
TCCCTTG
Found at i:27786 original size:102 final size:102
Alignment explanation
Indices: 27601--27789 Score: 290
Period size: 102 Copynumber: 1.9 Consensus size: 102
27591 CTTGAGACAG
* *
27601 TTTCTCTTGAAACAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTT
1 TTTCTCTTGAAACAAATTCCGTCTACCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTT
27666 GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
66 GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
* ** * *
27703 TTTCT-TTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCTCTTGAAACAAATTCCGTCTACCTTGAGACAGTTTCCCTT-GAAATAAATTTTGTCTCTCT
*
27767 TGAGACAGTTTCTCTTGAAACAA
65 TGAGACAGTTTCCCTTGAAACAA
27790 TTTTCGTCTA
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 33 0.42
102 45 0.58
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (102 bp):
TTTCTCTTGAAACAAATTCCGTCTACCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTT
GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
Found at i:27818 original size:138 final size:137
Alignment explanation
Indices: 27565--27889 Score: 427
Period size: 138 Copynumber: 2.4 Consensus size: 137
27555 CTTGAGACAG
*
27565 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
* *
27630 GAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTT
66 GAGACAGTTTCCCTTGAAATAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACATTT
*
27695 GAATATG
131 GAATATA
* * ** * * * * *
27702 TTTTCTTTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AAATTTCGTCTATCT
* * * *
27767 TGAGACAGTTTCTCTTGAAA-CAATTTTCGTCTATCTTGAGACGGTTTCCCTTGAAACAAAACCT
65 TGAGACAGTTTCCCTTGAAATAAATTTT-GTCTATCTTGAGACAGTTTCCCTTGAAACAAAACAT
*
27831 TTGAATTTA
129 TTGAATATA
* * * *
27840 TTTCCCCTAAAACAAATTTTTTCTCCCTTGAGACAGTTACTCTTGAAACA
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
27890 CAAAATCTTC
Statistics
Matches: 158, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
137 49 0.31
138 109 0.69
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (137 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
GAGACAGTTTCCCTTGAAATAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACATTT
GAATATA
Found at i:28785 original size:105 final size:105
Alignment explanation
Indices: 28601--29533 Score: 1427
Period size: 105 Copynumber: 9.0 Consensus size: 105
28591 GTACTCGAGG
* * ** *
28601 CAACACAAGTTCAACTTCACAACGAAGGGACAACTGGTTGTCAACAAACAACTTCTCAATTTCAG
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCTCAATTTCAG
*
28666 AGCCAATTTCAACTTCACAATGAAGGATATTGGACTCCAGA
65 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
28707 CAACGCAAGTTCAACTTCACGACGAAGGGACCGATGCCTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
* *
28772 GCCAATTTCAACTTCACAATGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
28812 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGT---CAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
* * *
28874 ACCAATTTCAACTTCACAATGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
28914 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
28979 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
29019 CAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
*
29084 GCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
29124 CAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
29189 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
29229 AAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
29294 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
29334 CAATGCAAGTTCAACTTCACGACGAA-GGACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
** *
29393 TTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * * ** *
29433 CAACACAAGTTCAACGTCACAACGAAGGGA-CGACTGGTTGTCAACAAACAATTTCCCGGTTCCA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGCTTGTCAAC-AACAACTTCTCAATTTCA
* *
29497 GAGCCAATTTCAACTTCACGACGGAGGATATTGGACT
64 GAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
29534 TGGAACAATG
Statistics
Matches: 772, Mismatches: 44, Indels: 22
0.92 0.05 0.03
Matches are distributed among these distances:
99 66 0.09
100 15 0.02
101 3 0.00
102 104 0.13
103 4 0.01
104 21 0.03
105 485 0.63
106 74 0.10
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (105 bp):
CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
Found at i:30123 original size:34 final size:36
Alignment explanation
Indices: 30079--30180 Score: 163
Period size: 34 Copynumber: 2.9 Consensus size: 36
30069 TTTCGTCCTA
*
30079 CTAGGATTCAAACTCCTAAAAATATGATAGAA-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
*
30114 -TAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
30149 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
30181 GTTATACTAT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
34 29 0.48
35 3 0.05
37 29 0.48
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (36 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
Found at i:30204 original size:37 final size:37
Alignment explanation
Indices: 30077--30214 Score: 156
Period size: 37 Copynumber: 3.8 Consensus size: 37
30067 TTTTTCGTCC
* *
30077 TACTAGGATTCAAACTCCTAAAAATATGATAGAATT-
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTA
*
30113 T--TAGGATTCAAACTCCTAAAAATAGGATAAAATTT
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTA
* * *
30148 TGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTTA
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTA
** * * *
30185 TACTATTATTTAAATTCCTAAAGATAGGAT
1 TACTAGGATTCAAACTCCTAAAAATAGGAT
30215 CCACAAGCAC
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
34 31 0.35
35 1 0.01
36 1 0.01
37 55 0.62
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (37 bp):
TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTA
Found at i:30581 original size:33 final size:32
Alignment explanation
Indices: 30542--30610 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 32
30532 AATCATTTTT
*
30542 TTTCCTACTT-TATTATTCTTGTATGTATATATG
1 TTTCCTA-TTATATTATTC-TATATGTATATATG
*
30575 TTTCCTATTAATTTTATTCTATATGTATATATG
1 TTTCCTATT-ATATTATTCTATATGTATATATG
30608 TTT
1 TTT
30611 TTTTTATTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 2 0.06
33 23 0.72
34 7 0.22
ACGTcount: A:0.23, C:0.10, G:0.07, T:0.59
Consensus pattern (32 bp):
TTTCCTATTATATTATTCTATATGTATATATG
Found at i:30633 original size:35 final size:33
Alignment explanation
Indices: 30563--30641 Score: 86
Period size: 35 Copynumber: 2.3 Consensus size: 33
30553 ATTATTCTTG
* *
30563 TATGTATATATGTTTCCTATTAATTTTATTCTA
1 TATGTATATATGTTTCCTATTAATGTTATTATA
** *
30596 TATGTATATATGTTTTTTTTATTAGTGTTATTATA
1 TATGTATATATG--TTTCCTATTAATGTTATTATA
*
30631 TATATATATAT
1 TATGTATATAT
30642 ATATATTTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 12 0.32
35 26 0.68
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.59
Consensus pattern (33 bp):
TATGTATATATGTTTCCTATTAATGTTATTATA
Found at i:30778 original size:16 final size:18
Alignment explanation
Indices: 30757--30791 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
30747 TTTACTCATT
30757 TATTTAT-CTAT-TTTTA
1 TATTTATCCTATATTTTA
30773 TATTTATCCTATATTTTA
1 TATTTATCCTATATTTTA
30791 T
1 T
30792 GTTTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 4 0.24
18 6 0.35
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTATCCTATATTTTA
Found at i:30925 original size:16 final size:16
Alignment explanation
Indices: 30887--30925 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
30877 GTTATTGTTT
30887 TTTATTTTATATTCTA
1 TTTATTTTATATTCTA
*
30903 TTCATTTTATATT-TA
1 TTTATTTTATATTCTA
30918 CTTTATTT
1 -TTTATTT
30926 CTTTCTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTATTTTATATTCTA
Found at i:32746 original size:27 final size:27
Alignment explanation
Indices: 32711--32795 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
32701 ATATATATTT
*
32711 TTAAATTAAAAAATAAATATTTTTAAA
1 TTAAGTTAAAAAATAAATATTTTTAAA
* *
32738 TTAAGTT-AATAATAAA-ATTTATTTAA
1 TTAAGTTAAAAAATAAATATTT-TTAAA
*
32764 -TAAGTTATTATAAA-AAATATTTTTAAA
1 TTAAGTTA--AAAAATAAATATTTTTAAA
32791 GTTAA
1 -TTAA
32796 TATATATAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
25 10 0.22
26 12 0.27
27 13 0.29
28 7 0.16
29 3 0.07
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (27 bp):
TTAAGTTAAAAAATAAATATTTTTAAA
Found at i:32751 original size:26 final size:26
Alignment explanation
Indices: 32700--32795 Score: 87
Period size: 22 Copynumber: 3.8 Consensus size: 26
32690 AGAAGAACCA
*
32700 AATATATATTTTTAAATTAA---AA-
1 AATAAATATTTTTAAATTAAGTTAAT
32722 AATAAATATTTTTAAATTAAGTTAAT
1 AATAAATATTTTTAAATTAAGTTAAT
*
32748 AATAAA-ATTTATTTAA-TAAGTTATTAT
1 AATAAATATTT-TTAAATTAAGTTA--AT
*
32775 AAAAAATATTTTTAAAGTTAA
1 AATAAATATTTTTAAA-TTAA
32796 TATATATAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
22 19 0.32
25 13 0.22
26 10 0.17
27 11 0.18
28 4 0.07
29 3 0.05
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (26 bp):
AATAAATATTTTTAAATTAAGTTAAT
Found at i:32784 original size:24 final size:25
Alignment explanation
Indices: 32739--32810 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 25
32729 ATTTTTAAAT
**
32739 TAAGTTAATAATAAAATTTATTTAA
1 TAAGTTAATAATAAAAAATATTTAA
* *
32764 TAAGTT-ATTATAAAAAATATTT-T
1 TAAGTTAATAATAAAAAATATTTAA
*
32787 TAAAGTTAATATATATAAAATATT
1 T-AAGTTAATA-ATAAAAAATATT
32811 ACGAGTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
23 1 0.03
24 18 0.47
25 8 0.21
26 11 0.29
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (25 bp):
TAAGTTAATAATAAAAAATATTTAA
Found at i:33078 original size:30 final size:30
Alignment explanation
Indices: 33042--33100 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
33032 AACTACGTCT
*
33042 TAATTAAATAAAAACGAAAGTGACCATATC
1 TAATTAAATAAAAACAAAAGTGACCATATC
*
33072 TAATTAAATAAAAATAAAAGTGACCATAT
1 TAATTAAATAAAAACAAAAGTGACCATAT
33101 ATTATGTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.25
Consensus pattern (30 bp):
TAATTAAATAAAAACAAAAGTGACCATATC
Found at i:33638 original size:21 final size:20
Alignment explanation
Indices: 33613--33652 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
33603 ACAGAAATTT
33613 CATCCCTAAACGGCTAGAAAA
1 CATCCC-AAACGGCTAGAAAA
*
33634 CATCCCCAACGGCTAGAAA
1 CATCCCAAACGGCTAGAAA
33653 CAACCACAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.40, C:0.33, G:0.15, T:0.12
Consensus pattern (20 bp):
CATCCCAAACGGCTAGAAAA
Found at i:33662 original size:19 final size:20
Alignment explanation
Indices: 33621--33662 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
33611 TTCATCCCTA
* *
33621 AACGGCTAGAAAACATCCCC
1 AACGGCTAGAAAACAACCAC
33641 AACGGCTAG-AAACAACCAC
1 AACGGCTAGAAAACAACCAC
33660 AAC
1 AAC
33663 TTCATTCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.45, C:0.33, G:0.14, T:0.07
Consensus pattern (20 bp):
AACGGCTAGAAAACAACCAC
Found at i:35535 original size:46 final size:44
Alignment explanation
Indices: 35467--35570 Score: 122
Period size: 44 Copynumber: 2.3 Consensus size: 44
35457 CCATTCAATA
* *
35467 GGTACTGATACCCTCTCAAACGAGAAAAATT-TCAGAATGTCAT-AGG
1 GGTACCGATACCCCCTCAAAC--GAAAAATTAT-AGAATGTCATGA-G
**
35513 GGTACCGATACCCCCTTGAACGAAAAATTATAGAATGTCATGAG
1 GGTACCGATACCCCCTCAAACGAAAAATTATAGAATGTCATGAG
35557 GGTACCGATACCCC
1 GGTACCGATACCCC
35571 TAGTAAGGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
44 33 0.63
45 2 0.04
46 17 0.33
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (44 bp):
GGTACCGATACCCCCTCAAACGAAAAATTATAGAATGTCATGAG
Found at i:37610 original size:63 final size:63
Alignment explanation
Indices: 37539--37724 Score: 277
Period size: 63 Copynumber: 3.0 Consensus size: 63
37529 AGTCGAGGAA
*
37539 ATACCTATGTTCTACGGAACATATGTACAGAATTACCTATGTCTTTCGGGACATATGGACAAT
1 ATACCTATGTTCTACGGAACATATGGACAGAATTACCTATGTCTTTCGGGACATATGGACAAT
* *
37602 ATACCTATGTTCTACGGAACATATGGACAGAATTACCTATGTCTCTCGGGACATATGGAAAAT
1 ATACCTATGTTCTACGGAACATATGGACAGAATTACCTATGTCTTTCGGGACATATGGACAAT
* * * * *
37665 ATACCTATGTTCTAAGGAACATATGGACAG-TTTACCTAGGT-TCTTCGGGACCTATAGACA
1 ATACCTATGTTCTACGGAACATATGGACAGAATTACCTATGTCT-TTCGGGACATATGGACA
37725 GTTACCGAGG
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
61 1 0.01
62 22 0.20
63 89 0.79
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (63 bp):
ATACCTATGTTCTACGGAACATATGGACAGAATTACCTATGTCTTTCGGGACATATGGACAAT
Found at i:37687 original size:31 final size:33
Alignment explanation
Indices: 37539--37694 Score: 193
Period size: 31 Copynumber: 4.9 Consensus size: 33
37529 AGTCGAGGAA
*
37539 ATACCTATGTTCTACGGAACATATGTACAGAAT
1 ATACCTATGTTCTACGGAACATATGGACAGAAT
* *
37572 -TACCTATG-TCTTTCGGGACATATGGAC--AAT
1 ATACCTATGTTC-TACGGAACATATGGACAGAAT
37602 ATACCTATGTTCTACGGAACATATGGACAGAAT
1 ATACCTATGTTCTACGGAACATATGGACAGAAT
*
37635 -TACCTATGTCTCT-CGGGACATATGGA-A-AAT
1 ATACCTATGT-TCTACGGAACATATGGACAGAAT
*
37665 ATACCTATGTTCTAAGGAACATATGGACAG
1 ATACCTATGTTCTACGGAACATATGGACAG
37695 TTTACCTAGG
Statistics
Matches: 105, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
30 9 0.09
31 45 0.43
32 45 0.43
33 6 0.06
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (33 bp):
ATACCTATGTTCTACGGAACATATGGACAGAAT
Found at i:37701 original size:31 final size:31
Alignment explanation
Indices: 37540--37727 Score: 173
Period size: 31 Copynumber: 6.0 Consensus size: 31
37530 GTCGAGGAAA
* *
37540 TACCTATGTTCTACGGAACATATGTACAGAAT
1 TACCTATGTTCTACGGAACATATGGACAG-TT
* * * *
37572 TACCTATG-TCTTTCGGGACATATGGACAATA
1 TACCTATGTTC-TACGGAACATATGGACAGTT
*
37603 TACCTATGTTCTACGGAACATATGGACAGAAT
1 TACCTATGTTCTACGGAACATATGGACAG-TT
* * * *
37635 TACCTATGTCTCT-CGGGACATATGGAAAATA
1 TACCTATGT-TCTACGGAACATATGGACAGTT
*
37666 TACCTATGTTCTAAGGAACATATGGACAGTT
1 TACCTATGTTCTACGGAACATATGGACAGTT
* * * * *
37697 TACCTAGGTTCTTCGGGACCTATAGACAGTT
1 TACCTATGTTCTACGGAACATATGGACAGTT
37728 ACCGAGGTTC
Statistics
Matches: 124, Mismatches: 27, Indels: 11
0.77 0.17 0.07
Matches are distributed among these distances:
30 3 0.02
31 72 0.58
32 46 0.37
33 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (31 bp):
TACCTATGTTCTACGGAACATATGGACAGTT
Found at i:40295 original size:23 final size:23
Alignment explanation
Indices: 40269--40405 Score: 193
Period size: 23 Copynumber: 6.0 Consensus size: 23
40259 AATATTTTAT
*
40269 GGCACTTCGGTGCATTTCTACGC
1 GGCACTACGGTGCATTTCTACGC
40292 GGCACTACGGTGCATTTCTACGC
1 GGCACTACGGTGCATTTCTACGC
* *
40315 GACACTACGGTGCATTTCTATGC
1 GGCACTACGGTGCATTTCTACGC
*
40338 GGCACTACGGTGCATTTCTATGC
1 GGCACTACGGTGCATTTCTACGC
* *
40361 GGCACTACGGTGCAATTCTACGT
1 GGCACTACGGTGCATTTCTACGC
* * *
40384 GGCACTTCGGTGTATTTATACG
1 GGCACTACGGTGCATTTCTACG
40406 AGCTGTGGTG
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 103 1.00
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.30
Consensus pattern (23 bp):
GGCACTACGGTGCATTTCTACGC
Found at i:40655 original size:53 final size:53
Alignment explanation
Indices: 40575--40677 Score: 197
Period size: 53 Copynumber: 1.9 Consensus size: 53
40565 TTGTTAATTG
*
40575 GTATAGCTATATATGTGCTATATGATGTGTATGCATGGTGAGTAAAAGGGAAT
1 GTATAGCTATATATGTACTATATGATGTGTATGCATGGTGAGTAAAAGGGAAT
40628 GTATAGCTATATATGTACTATATGATGTGTATGCATGGTGAGTAAAAGGG
1 GTATAGCTATATATGTACTATATGATGTGTATGCATGGTGAGTAAAAGGG
40678 TCATATGATC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (53 bp):
GTATAGCTATATATGTACTATATGATGTGTATGCATGGTGAGTAAAAGGGAAT
Found at i:43211 original size:21 final size:20
Alignment explanation
Indices: 43182--43221 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
43172 GCATAAATTT
43182 CATCCCCAAACGGCTAGAAAA
1 CATCCCC-AACGGCTAGAAAA
* *
43203 CATCTCCAATGGCTAGAAA
1 CATCCCCAACGGCTAGAAA
43222 CGACCACAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.40, C:0.30, G:0.15, T:0.15
Consensus pattern (20 bp):
CATCCCCAACGGCTAGAAAA
Found at i:52671 original size:21 final size:21
Alignment explanation
Indices: 52631--52671 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
52621 TTTGGGCTAA
* *
52631 GGGAATCGGTACCCATTCAAG
1 GGGAATCGATACCCACTCAAG
*
52652 GGGAATCGATACCCCCTCAA
1 GGGAATCGATACCCACTCAA
52672 CGAATATGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.17
Consensus pattern (21 bp):
GGGAATCGATACCCACTCAAG
Found at i:52723 original size:20 final size:20
Alignment explanation
Indices: 52698--52735 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
52688 GAATGCTAGA
*
52698 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
52718 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
52736 TAATGAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:53381 original size:23 final size:23
Alignment explanation
Indices: 53345--53407 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
53335 ATTATTATAT
*
53345 GGCACTACGATGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
53368 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
53391 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
53408 ATATGAGCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 34 0.97
24 1 0.03
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:59510 original size:20 final size:21
Alignment explanation
Indices: 59474--59532 Score: 93
Period size: 20 Copynumber: 2.9 Consensus size: 21
59464 GAATGCTAGA
59474 GGGGAATCGATACCCCCAGGG
1 GGGGAATCGATACCCCCAGGG
59495 GGGGAATCGATACCCCCA-GG
1 GGGGAATCGATACCCCCAGGG
* *
59515 GGGGAACCGATTCCCCCA
1 GGGGAATCGATACCCCCA
59533 TAATAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 18 0.50
21 18 0.50
ACGTcount: A:0.24, C:0.32, G:0.34, T:0.10
Consensus pattern (21 bp):
GGGGAATCGATACCCCCAGGG
Found at i:60183 original size:18 final size:19
Alignment explanation
Indices: 60152--60195 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
60142 TATTCTCTTA
* *
60152 TTTTTTTTACTTTAATTGC
1 TTTTATTTACTTTAATCGC
*
60171 TTTTATTTA-TTTAATCGT
1 TTTTATTTACTTTAATCGC
60189 TTTTATT
1 TTTTATT
60196 ACTACTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.18, C:0.07, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTATTTACTTTAATCGC
Found at i:75484 original size:18 final size:19
Alignment explanation
Indices: 75456--75495 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
75446 TCTCTTATTT
*
75456 TTTACTTTAATTGCTTTTA
1 TTTACTTTAATCGCTTTTA
*
75475 TTTA-TTTAATCGTTTTTA
1 TTTACTTTAATCGCTTTTA
75493 TTT
1 TTT
75496 CTACTTAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (19 bp):
TTTACTTTAATCGCTTTTA
Found at i:78158 original size:23 final size:23
Alignment explanation
Indices: 78139--78221 Score: 130
Period size: 23 Copynumber: 3.6 Consensus size: 23
78129 ATGGCACTAT
78139 GGTGCAATTCTACGCGGCACTCC
1 GGTGCAATTCTACGCGGCACTCC
78162 GGTGCAATTCTACGCGGCACTCC
1 GGTGCAATTCTACGCGGCACTCC
* * *
78185 GGTACAATTCTACGTGGCACTTC
1 GGTGCAATTCTACGCGGCACTCC
*
78208 GGTGCAATTATACG
1 GGTGCAATTCTACG
78222 AGATATGGTG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.20, C:0.29, G:0.25, T:0.25
Consensus pattern (23 bp):
GGTGCAATTCTACGCGGCACTCC
Found at i:84419 original size:64 final size:67
Alignment explanation
Indices: 84351--84478 Score: 176
Period size: 64 Copynumber: 2.0 Consensus size: 67
84341 TTTAAAAAGA
84351 AAACATCGAAT-GTCATTAATGCATCGATGCATAAG-G-AGTGCATCGATGCAT-CC-CCATTAA
1 AAACATCGAATAG-CATTAATGCATCGATGCAT-AGTGTAGTGCATCGATGCATACCTCCATTAA
84411 ATAC
64 ATAC
* * *
84415 AAACATCGAATAGGATTTATGCATCGATGCATGGTGTAGTGCATCGATGCATACCTCCATTAAA
1 AAACATCGAATAGCATTAATGCATCGATGCATAGTGTAGTGCATCGATGCATACCTCCATTAAA
84479 AGATGAAAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
63 1 0.02
64 29 0.52
65 16 0.29
66 2 0.04
67 8 0.14
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (67 bp):
AAACATCGAATAGCATTAATGCATCGATGCATAGTGTAGTGCATCGATGCATACCTCCATTAAAT
AC
Found at i:85117 original size:23 final size:23
Alignment explanation
Indices: 85055--85123 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
85045 GACATTATTA
*
85055 TGGCACTACGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* *
85078 CGGCAC-TCTGGTACAATTCTACG
1 TGGCACTTC-GGTGCAATTCTACG
*
85101 TGGCACTTCGGTGCAATTATACG
1 TGGCACTTCGGTGCAATTCTACG
85124 AGATATGGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
22 1 0.03
23 35 0.92
24 2 0.05
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.28
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:88461 original size:25 final size:25
Alignment explanation
Indices: 88427--88478 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
88417 CATTCAAGAC
88427 ATTCTCTTTATATTTTGTTGAGTTT
1 ATTCTCTTTATATTTTGTTGAGTTT
88452 ATTCTCTTTATATTTTGTTGAGTTT
1 ATTCTCTTTATATTTTGTTGAGTTT
88477 AT
1 AT
88479 GAGGTGTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.17, C:0.08, G:0.12, T:0.63
Consensus pattern (25 bp):
ATTCTCTTTATATTTTGTTGAGTTT
Found at i:89716 original size:46 final size:45
Alignment explanation
Indices: 89650--89736 Score: 147
Period size: 46 Copynumber: 1.9 Consensus size: 45
89640 AGTAACCTCT
*
89650 ATTTTTTTTTAAAAATAGTTTGAGGTGATTACAATGTAATAAATA
1 ATTTTTTTTTAAAAATAGTTTGAGGTGATTACAATATAATAAATA
*
89695 ATTTTTATTTTAAAAATAGTTTGAGGTTATTACAATATAATA
1 ATTTTT-TTTTAAAAATAGTTTGAGGTGATTACAATATAATA
89737 TTTGTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 6 0.15
46 33 0.85
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.46
Consensus pattern (45 bp):
ATTTTTTTTTAAAAATAGTTTGAGGTGATTACAATATAATAAATA
Found at i:94726 original size:18 final size:19
Alignment explanation
Indices: 94705--94740 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
94695 ATAATTTCTA
94705 AAATAATTA-TAAAAATCT
1 AAATAATTATTAAAAATCT
*
94723 AAATATTTATTAAAAATC
1 AAATAATTATTAAAAATC
94741 AATTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATAATTATTAAAAATCT
Found at i:103834 original size:29 final size:29
Alignment explanation
Indices: 103791--103873 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
103781 CTCACCTAAC
103791 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
103821 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
103850 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
103874 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:108600 original size:29 final size:29
Alignment explanation
Indices: 108557--108639 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
108547 CTCACCTAAC
108557 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
108587 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
108616 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
108640 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:111511 original size:61 final size:58
Alignment explanation
Indices: 111421--111576 Score: 143
Period size: 59 Copynumber: 2.6 Consensus size: 58
111411 AATTGGAATG
* **
111421 TATAGTTTGGGATGGAATTGGAATATTCAAAAAGTTT-AGGGACTAATTTAGAATGACAGT
1 TATAGTTTGGGATGAAATTAAAATATTC-AAAAGTTTGA-GGACTAA-TTAGAATGACAGT
* * * * *
111481 TATAGTTTGGTGATGAAATTAAAATGTTCAAAAGTTTGAGGATTAATTAGAATAATACT
1 TATAGTTTGG-GATGAAATTAAAATATTCAAAAGTTTGAGGACTAATTAGAATGACAGT
* * * * *
111540 CATAGTTTAAGGATAAAATTATAATATTTAAAAGTTT
1 TATAGTTT-GGGATGAAATTAAAATATTCAAAAGTTT
111577 ATGGACCAGT
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
59 39 0.49
60 25 0.32
61 15 0.19
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.37
Consensus pattern (58 bp):
TATAGTTTGGGATGAAATTAAAATATTCAAAAGTTTGAGGACTAATTAGAATGACAGT
Found at i:111514 original size:60 final size:59
Alignment explanation
Indices: 111421--111533 Score: 140
Period size: 60 Copynumber: 1.9 Consensus size: 59
111411 AATTGGAATG
* **
111421 TATAGTTTGGGATGGAATTGGAATATTCAAAAAGTTT-AGGGACTAATTTAGAATGACAGT
1 TATAGTTTGGGATGAAATTAAAATATTCAAAAAGTTTGA-GGACTAA-TTAGAATGACAGT
* *
111481 TATAGTTTGGTGATGAAATTAAAATGTTC-AAAAGTTTGAGGATTAATTAGAAT
1 TATAGTTTGG-GATGAAATTAAAATATTCAAAAAGTTTGAGGACTAATTAGAAT
111534 AATACTCATA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
59 7 0.15
60 24 0.52
61 15 0.33
ACGTcount: A:0.38, C:0.04, G:0.23, T:0.35
Consensus pattern (59 bp):
TATAGTTTGGGATGAAATTAAAATATTCAAAAAGTTTGAGGACTAATTAGAATGACAGT
Found at i:112952 original size:19 final size:19
Alignment explanation
Indices: 112914--112952 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
112904 TATGTTTGTG
* *
112914 ATTAAAGAACTATAATAAA
1 ATTAAAGAACTAGAAAAAA
112933 ATTAAAGAACTAGAAAAAA
1 ATTAAAGAACTAGAAAAAA
112952 A
1 A
112953 AAACTTGTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.67, C:0.05, G:0.08, T:0.21
Consensus pattern (19 bp):
ATTAAAGAACTAGAAAAAA
Found at i:113809 original size:22 final size:20
Alignment explanation
Indices: 113784--113829 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
113774 CGTTAATTTT
113784 ATTAAAAAAAGAAAATATATAA
1 ATTAAAAAAA-AAAAT-TATAA
* *
113806 ATTATAATAAAAAATTATAA
1 ATTAAAAAAAAAAATTATAA
113826 ATTA
1 ATTA
113830 TACTCATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.41
21 5 0.23
22 8 0.36
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
ATTAAAAAAAAAAATTATAA
Found at i:113842 original size:19 final size:19
Alignment explanation
Indices: 113818--113861 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
113808 TATAATAAAA
113818 AATTATAA-A-TTATACTCAT
1 AATTATAATAGTT-TACT-AT
113837 AATTATAATAGTTTACTAT
1 AATTATAATAGTTTACTAT
113856 AATTAT
1 AATTAT
113862 TGACACAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 16 0.70
20 5 0.22
21 2 0.09
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.45
Consensus pattern (19 bp):
AATTATAATAGTTTACTAT
Found at i:114191 original size:13 final size:14
Alignment explanation
Indices: 114168--114200 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
114158 AATCAAACCC
114168 TAAAAATTAAACAA
1 TAAAAATTAAACAA
114182 TAAAAA-TAAACAA
1 TAAAAATTAAACAA
114195 TAAAAA
1 TAAAAA
114201 AAGTGTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (14 bp):
TAAAAATTAAACAA
Found at i:114292 original size:21 final size:21
Alignment explanation
Indices: 114268--114316 Score: 84
Period size: 19 Copynumber: 2.4 Consensus size: 21
114258 AAACATAAGA
114268 AAAATAAATATATGATATATG
1 AAAATAAATATATGATATATG
114289 AAAAT-AA-ATATGATATATG
1 AAAATAAATATATGATATATG
114308 AAAATAAAT
1 AAAATAAAT
114317 GAGAAACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 17 0.65
20 4 0.15
21 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (21 bp):
AAAATAAATATATGATATATG
Found at i:115486 original size:229 final size:224
Alignment explanation
Indices: 115083--115528 Score: 752
Period size: 229 Copynumber: 2.0 Consensus size: 224
115073 GTAAATTATC
* *
115083 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA-CTTTAGT
*
115148 TAATATTGTTAAATTTAAAATCTAAATAATATTTTAAAAATATCAAAACAATCAAATAATTTTTG
65 TAATATTGTTAAATTTAAAATCTAAATAATATTTTAAAAATATCAAAACAATCAAATAAATTTTG
115213 TGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA-AAATTGAA
130 TGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATTGAA
115277 ACATAAATTACATAACTTTCAAAAAAAGTATA
195 ACAT-AATTACATAACTTT-AAAAAAAGTATA
*
115309 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTAAATTA-TTTG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATT--ATTACTTTA
*
115373 GTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAAT
63 GTTAATATTGTTAAATTTAAAATCTAAATAATATTTTA-AAAATATCAAAACAATCAAAT-AAAT
*
115438 TTTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAAT
126 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAAT
115503 TGAAACATAATTACATAACTTTAAAA
191 TGAAACATAATTACATAACTTTAAAA
115529 GCAGTTTTAA
Statistics
Matches: 208, Mismatches: 6, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
226 36 0.17
227 55 0.26
228 25 0.12
229 80 0.38
230 12 0.06
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.39
Consensus pattern (224 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTACTTTAGTT
AATATTGTTAAATTTAAAATCTAAATAATATTTTAAAAATATCAAAACAATCAAATAAATTTTGT
GTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATTGAAA
CATAATTACATAACTTTAAAAAAAGTATA
Found at i:115617 original size:20 final size:19
Alignment explanation
Indices: 115594--115639 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
115584 CGATATACCA
115594 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
115614 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
115634 GGTAAA
1 GGTAAA
115640 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:118148 original size:33 final size:33
Alignment explanation
Indices: 118106--118171 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
118096 AAATAGATGG
*
118106 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
118139 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
118172 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:119983 original size:19 final size:19
Alignment explanation
Indices: 119959--120006 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 19
119949 AATGTCGAGT
119959 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
119978 TAA-TTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
119996 TATTTTTGTAT
1 TAATTTTGTAT
120007 GTGAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.56
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:120461 original size:197 final size:199
Alignment explanation
Indices: 120123--121285 Score: 2121
Period size: 197 Copynumber: 5.9 Consensus size: 199
120113 CAATATGGCC
* *
120123 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAA-CATCGAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCG-AA
*
120187 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
64 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
120252 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
120317 ATGGAA
194 ATGGAA
*
120323 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
120388 CAAAAGTATAATGT-A-ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
120451 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
120516 GGAA
196 GGAA
* *
120520 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCAAT-CCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
120584 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
120649 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA--TTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
**
120712 TAAA
196 GGAA
120716 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
120781 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
120846 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
120911 GG-A
196 GGAA
* *
120914 AACAAGGTGCACCCATAAAGTATTGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
120979 CAAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
121043 AATATGTCTAAATAA--TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
121106 GGAA
196 GGAA
121110 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
121175 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
121240 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
121286 CTAATTTAAA
Statistics
Matches: 937, Mismatches: 16, Indels: 21
0.96 0.02 0.02
Matches are distributed among these distances:
195 50 0.05
196 182 0.19
197 402 0.43
198 182 0.19
199 81 0.09
200 40 0.04
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (199 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
GGAA
Found at i:122741 original size:18 final size:18
Alignment explanation
Indices: 122720--122781 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
122710 AGCGGTCGCA
122720 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* * *
122738 GAAGATGACGATGATGAT
1 GAAGATGAAGCTGACGAT
* *
122756 GACGATGAAGCTGGCGAT
1 GAAGATGAAGCTGACGAT
122774 GAAGATGA
1 GAAGATGA
122782 TGACGATGAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.35, T:0.18
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:122744 original size:6 final size:6
Alignment explanation
Indices: 122720--122811 Score: 67
Period size: 6 Copynumber: 15.3 Consensus size: 6
122710 AGCGGTCGCA
* * * * * *
122720 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GACGAT GAAGCT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
** * * * * *
122768 GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT GA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA
122812 TGATCCAAAC
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:122755 original size:3 final size:3
Alignment explanation
Indices: 122735--122815 Score: 72
Period size: 3 Copynumber: 27.0 Consensus size: 3
122725 TGAAGCTGAC
* * * * * ** *
122735 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
122783 GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
122816 CCAAACAAGT
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.36, C:0.06, G:0.35, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:122774 original size:36 final size:36
Alignment explanation
Indices: 122723--122799 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
122713 GGTCGCAGAA
*
122723 GATGAAGCTGACGATGAAGATGACGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
* * *
122759 GATGAAGCTGGCGATGAAGATGATGACGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
122795 GATGA
1 GATGA
122800 TGATGAAGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (36 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGAC
Found at i:122815 original size:12 final size:12
Alignment explanation
Indices: 122723--122811 Score: 88
Period size: 12 Copynumber: 7.4 Consensus size: 12
122713 GGTCGCAGAA
*
122723 GATGAAGCTGAC
1 GATGAAGATGAC
122735 GATGAAGATGAC
1 GATGAAGATGAC
*
122747 GATGATGATGAC
1 GATGAAGATGAC
* *
122759 GATGAAGCTGGC
1 GATGAAGATGAC
*
122771 GATGAAGATGAT
1 GATGAAGATGAC
* * *
122783 GACGATGATGAT
1 GATGAAGATGAC
* *
122795 GATGATGATGAA
1 GATGAAGATGAC
122807 GATGA
1 GATGA
122812 TGATCCAAAC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.36, C:0.08, G:0.35, T:0.21
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:122815 original size:18 final size:18
Alignment explanation
Indices: 122720--122811 Score: 76
Period size: 18 Copynumber: 5.1 Consensus size: 18
122710 AGCGGTCGCA
*
122720 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGACGAT
* *
122738 GAAGATGACGATGATGAT
1 GAAGATGAAGATGACGAT
* * *
122756 GACGATGAAGCTGGCGAT
1 GAAGATGAAGATGACGAT
* * *
122774 GAAGATGATGACGATGAT
1 GAAGATGAAGATGACGAT
* * *
122792 GATGATGATGATGAAGAT
1 GAAGATGAAGATGACGAT
122810 GA
1 GA
122812 TGATCCAAAC
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGATGACGAT
Found at i:124671 original size:180 final size:184
Alignment explanation
Indices: 124270--124966 Score: 1190
Period size: 179 Copynumber: 3.9 Consensus size: 184
124260 CTTTCAACAT
* * * * * *
124270 ATTATAAT-AAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
* * * *
124334 GGTCTACAACCTATATCGACACTTTTTAATATTGTATCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
124399 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
124453 ATTATAATGTAATAGATAATTTTGTAATATAA-CGGTAT-AA-ATA-CGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
124514 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAA-AAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
124578 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
124632 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
124697 GGTCTACAACCTATATCGACAC-TT-T-ATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
124759 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
124813 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGG-TTT-TGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
124876 GGTCTACAACCTATATCGACACTTTATAATA-T-TGT--GTACTTTATGTCCAGATTGGAATAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
*
124937 AATGTGTCGATACCATTTAAAAAAGTGTCG
131 AATGTGTCGATACGATTTAAAAAAGTGTCG
124967 GTAATTTGAA
Statistics
Matches: 495, Mismatches: 10, Indels: 23
0.94 0.02 0.04
Matches are distributed among these distances:
178 55 0.11
179 121 0.24
180 121 0.24
181 115 0.23
182 10 0.02
183 54 0.11
184 19 0.04
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:127445 original size:25 final size:25
Alignment explanation
Indices: 127411--127475 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
127401 TTATCATTAA
127411 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
127436 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
127461 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
127476 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:127787 original size:21 final size:23
Alignment explanation
Indices: 127756--127817 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 23
127746 ATAGGTAAAC
*
127756 ATATGATGTAATAGGTAGC-CCT
1 ATATAATGTAATAGGTAGCGCCT
* **
127778 -TATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCCT
127800 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
127818 TGGTTATATT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 16 0.48
22 1 0.03
23 16 0.48
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCCT
Found at i:127824 original size:23 final size:23
Alignment explanation
Indices: 127778--127826 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
127768 AGGTAGCCCT
*
127778 TATAATGTAATAGGTATCGTTTA
1 TATAATGTAATAGGTATCGGTTA
127801 TATAATGTAATAGGTAGT-GGTTA
1 TATAATGTAATAGGTA-TCGGTTA
127824 TAT
1 TAT
127827 TGTAAAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (23 bp):
TATAATGTAATAGGTATCGGTTA
Found at i:127830 original size:21 final size:21
Alignment explanation
Indices: 127762--127831 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
127752 AAACATATGA
** *
127762 TGTAATAGGTAGCCCTTATAA
1 TGTAATAGGTAGTGCTTATAT
*
127783 TGTAATAGGTA-TCGTTTATAT
1 TGTAATAGGTAGT-GCTTATAT
*
127804 AATGTAATAGGTAGTGGTTATAT
1 --TGTAATAGGTAGTGCTTATAT
127827 TGTAA
1 TGTAA
127832 AGTGTCTATC
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
21 21 0.52
23 18 0.45
24 1 0.03
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.40
Consensus pattern (21 bp):
TGTAATAGGTAGTGCTTATAT
Found at i:128123 original size:25 final size:25
Alignment explanation
Indices: 128089--128139 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
128079 ACAACAAATC
*
128089 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
128114 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
128139 A
1 A
128140 TTTGGAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:128450 original size:18 final size:18
Alignment explanation
Indices: 128429--128465 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
128419 GTAATTGGAG
128429 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
128447 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
128465 T
1 T
128466 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:128473 original size:24 final size:24
Alignment explanation
Indices: 128421--128467 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
128411 TTTCATATGT
* *
128421 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
128445 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
128468 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:128763 original size:39 final size:39
Alignment explanation
Indices: 128720--128806 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
128710 TCCGATGCTC
*
128720 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
*
128759 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
128798 ATCAAAATC
1 ATCAAAATC
128807 TACAACTTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.48, C:0.21, G:0.14, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:129199 original size:22 final size:23
Alignment explanation
Indices: 129142--129199 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
129132 AAATTACATA
129142 ACTTTTAA-AAAAAGTATCGATC
1 ACTTTTAATAAAAAGTATCGATC
* *
129164 -CTTTTTATAAAAAGTATGGA-C
1 ACTTTTAATAAAAAGTATCGATC
*
129185 ACTTTTAATATAAAG
1 ACTTTTAATAAAAAG
129200 GTAAACATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 7 0.23
22 23 0.77
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.36
Consensus pattern (23 bp):
ACTTTTAATAAAAAGTATCGATC
Found at i:129276 original size:21 final size:21
Alignment explanation
Indices: 129232--129277 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
129222 AGCCCTTATA
129232 TAATAGGTATCGTTATATAATG
1 TAATAGGTATCGTTATAT-ATG
*
129254 TAATAGGTAGTGGTTATAT-TG
1 TAATAGGTA-TCGTTATATATG
129275 TAA
1 TAA
129278 AGTGTCTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 5 0.23
22 9 0.41
23 8 0.36
ACGTcount: A:0.35, C:0.02, G:0.22, T:0.41
Consensus pattern (21 bp):
TAATAGGTATCGTTATATATG
Found at i:131978 original size:6 final size:6
Alignment explanation
Indices: 131963--131993 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
131953 GAAATGATGA
*
131963 TAATGC TAATGG TAATGC TAATGC TAATGC T
1 TAATGC TAATGC TAATGC TAATGC TAATGC T
131994 GGTACTGCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (6 bp):
TAATGC
Found at i:132097 original size:21 final size:21
Alignment explanation
Indices: 132073--132120 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
132063 AATATGGATA
**
132073 TGGATACACGCCTGGTTACCC
1 TGGATACACGCCAAGTTACCC
* *
132094 TGGATACATGCCAAGTTATCC
1 TGGATACACGCCAAGTTACCC
132115 TGGATA
1 TGGATA
132121 TGGGCAACCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (21 bp):
TGGATACACGCCAAGTTACCC
Found at i:133795 original size:9 final size:9
Alignment explanation
Indices: 133783--133807 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
133773 AATAATGTCA
133783 TGATGTGGT
1 TGATGTGGT
133792 TGATGTGGT
1 TGATGTGGT
133801 TGATGTG
1 TGATGTG
133808 CATGTACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.44, T:0.44
Consensus pattern (9 bp):
TGATGTGGT
Found at i:135425 original size:17 final size:17
Alignment explanation
Indices: 135403--135439 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
135393 TCTTAAGAGA
135403 CCAGAGTGCTCGCCGAC
1 CCAGAGTGCTCGCCGAC
135420 CCAGAGTGCTCGCCGAC
1 CCAGAGTGCTCGCCGAC
135437 CCA
1 CCA
135440 ACCCCTCCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.19, C:0.43, G:0.27, T:0.11
Consensus pattern (17 bp):
CCAGAGTGCTCGCCGAC
Done.