Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007908.1 Hibiscus syriacus cultivar Beakdansim tig00110302_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 529382
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 3
Found at i:4436 original size:29 final size:29
Alignment explanation
Indices: 4393--4475 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
4383 CTCACCTAAC
4393 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
4423 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
4452 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
4476 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:6286 original size:60 final size:59
Alignment explanation
Indices: 6184--6318 Score: 155
Period size: 60 Copynumber: 2.3 Consensus size: 59
6174 TTTAACTTCA
* * ** * *
6184 AATATTTCAATTTTATCCTTAAACTATGACTTTCACTTTAAATTAGTCCTTAAACTTTTG
1 AATATTTCAATTTCATCCCTAAACTATGACCCTCACTTTAAATTAGCCCTCAAAC-TTTG
* * *
6244 AATATTTTAATTTCATCCCTAAACTATGACCCTC-TTTCTAAATTGGCCCTCAAACTTTG
1 AATATTTCAATTTCATCCCTAAACTATGACCCTCACTT-TAAATTAGCCCTCAAACTTTG
*
6303 AATATCTCAATTTCAT
1 AATATTTCAATTTCAT
6319 TACCTATTTC
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
59 20 0.32
60 43 0.68
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.43
Consensus pattern (59 bp):
AATATTTCAATTTCATCCCTAAACTATGACCCTCACTTTAAATTAGCCCTCAAACTTTG
Found at i:7299 original size:60 final size:59
Alignment explanation
Indices: 7206--7383 Score: 169
Period size: 60 Copynumber: 3.0 Consensus size: 59
7196 AATTGGAATG
* ** * *
7206 TATAGTTTGGGATGGAATTGGAATATTCAAAAAGTTTAGGGACTAATTTAGAATGACAGT
1 TATAGTTTGGGATGAAATTAAAATATTC-AAAAGTTTAGGGACTAATTTAGAATAACACT
* *
7266 TATAGTTTGGTGATGAAATTAAAATGTTCAAAAGTTT-GAGGATTAATTTAGAATAACACT
1 TATAGTTTGG-GATGAAATTAAAATATTCAAAAGTTTAG-GGACTAATTTAGAATAACACT
* * * * * * * * *
7326 CATAGTTTAAGGATAAAATTATAATATTTAAAAGTTTATGGACCAGTTTAAAATAACA
1 TATAGTTT-GGGATGAAATTAAAATATTCAAAAGTTTAGGGACTAATTTAGAATAACA
7384 GTCATACTTT
Statistics
Matches: 96, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
59 1 0.01
60 80 0.83
61 15 0.16
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.35
Consensus pattern (59 bp):
TATAGTTTGGGATGAAATTAAAATATTCAAAAGTTTAGGGACTAATTTAGAATAACACT
Found at i:8735 original size:19 final size:19
Alignment explanation
Indices: 8697--8735 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8687 TATGTTTGTG
* *
8697 ATTAAAGAACTATAATAAA
1 ATTAAAGAACTAGAAAAAA
8716 ATTAAAGAACTAGAAAAAA
1 ATTAAAGAACTAGAAAAAA
8735 A
1 A
8736 AAACTTGTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.67, C:0.05, G:0.08, T:0.21
Consensus pattern (19 bp):
ATTAAAGAACTAGAAAAAA
Found at i:9640 original size:19 final size:20
Alignment explanation
Indices: 9598--9642 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
9588 TTATAATAAA
9598 AATTATAAAATTATACTCAT
1 AATTATAAAATTATACTCAT
*
9618 AATTATAATAGTT-TACT-AT
1 AATTATAA-AATTATACTCAT
9637 AATTAT
1 AATTAT
9643 TGACACAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 12 0.52
21 3 0.13
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (20 bp):
AATTATAAAATTATACTCAT
Found at i:9974 original size:13 final size:14
Alignment explanation
Indices: 9952--9983 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
9942 TCAAACCCTA
9952 AAAAATTAAACAAT
1 AAAAATTAAACAAT
9966 AAAAA-TAAACAAT
1 AAAAATTAAACAAT
9979 AAAAA
1 AAAAA
9984 AAGTGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (14 bp):
AAAAATTAAACAAT
Found at i:9984 original size:14 final size:15
Alignment explanation
Indices: 9950--9984 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
9940 AATCAAACCC
9950 TAAAAAATTAAACAA
1 TAAAAAATTAAACAA
9965 T-AAAAA-TAAACAA
1 TAAAAAATTAAACAA
9978 TAAAAAA
1 TAAAAAA
9985 AGTGTCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 8 0.42
14 10 0.53
15 1 0.05
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAAAAATTAAACAA
Found at i:10088 original size:19 final size:20
Alignment explanation
Indices: 10050--10096 Score: 78
Period size: 21 Copynumber: 2.4 Consensus size: 20
10040 AAACATAAGA
10050 AAAATAAATATATGATATATG
1 AAAATAAATATATGA-ATATG
10071 AAAATAAATATATG-ATATG
1 AAAATAAATATATGAATATG
10090 AAAATAA
1 AAAATAA
10097 TGAGAAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 12 0.46
21 14 0.54
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.30
Consensus pattern (20 bp):
AAAATAAATATATGAATATG
Found at i:11275 original size:226 final size:223
Alignment explanation
Indices: 10876--11314 Score: 756
Period size: 226 Copynumber: 2.0 Consensus size: 223
10866 TATCTATCCT
*
10876 TTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGTTAATAT
1 TTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA-CTTTAGTTAATAT
**
10941 TGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACATCAAATAATTTTTTGTGTAA
65 TGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACATCAAATAAAATTTTGTGTAA
11006 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA-AAATTGAAACATA
130 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATTGAAACATA
11070 AATTACATAACTTTCAAAAAGTATATATCA
195 AATTACATAACTTT-AAAAAGTATATATCA
*
11100 TTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTAAATTA-TTTGGTTAAT
1 TTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATT--ATTACTTTAGTTAAT
*
11164 ATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTTTGTG
63 ATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAAC-ATCAAATAAAATTTTGTG
*
11229 TAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATTGAAAC
127 TAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATTGAAAC
11294 ATAAATTACATAACTTTAAAA
192 ATAAATTACATAACTTTAAAA
11315 GCAGTTTTAA
Statistics
Matches: 204, Mismatches: 6, Indels: 8
0.94 0.03 0.04
Matches are distributed among these distances:
224 31 0.15
225 69 0.34
226 73 0.36
227 31 0.15
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.39
Consensus pattern (223 bp):
TTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTACTTTAGTTAATATT
GTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACATCAAATAAAATTTTGTGTAAA
TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATTGAAACATAA
ATTACATAACTTTAAAAAGTATATATCA
Found at i:13841 original size:21 final size:21
Alignment explanation
Indices: 13794--13858 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
13784 AAGACAATCA
* *
13794 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
13816 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
13836 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
13857 AG
1 AG
13859 GCATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:13934 original size:33 final size:33
Alignment explanation
Indices: 13892--13957 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
13882 AAATAGATGG
*
13892 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
13925 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
13958 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:15793 original size:18 final size:19
Alignment explanation
Indices: 15749--15796 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
15739 AATGTCGAGT
15749 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
15768 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
15787 T-ATTTTGTAT
1 TAATTTTGTAT
15797 GTGAATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 9 0.32
19 19 0.68
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.56
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:16256 original size:198 final size:199
Alignment explanation
Indices: 15915--17083 Score: 2166
Period size: 198 Copynumber: 5.9 Consensus size: 199
15905 CAATATGGCC
* * *
15915 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCG-AA
*
15980 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
64 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
16045 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
16110 ATGGAA
194 ATGGAA
*
16116 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
16180 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
16245 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
16310 GGAA
196 GGAA
* *
16314 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
16379 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
16444 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
**
16508 TAAA
196 GGAA
16512 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
16577 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
16642 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
16706 GGAA
196 GGAA
* *
16710 AACAAGGTGCACCCATAAAGTATTGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
16775 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
16840 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
16905 GGAA
196 GGAA
16909 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
16974 CAAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
17038 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
17084 CTAATTTAAA
Statistics
Matches: 949, Mismatches: 17, Indels: 7
0.98 0.02 0.01
Matches are distributed among these distances:
198 644 0.68
199 270 0.28
201 35 0.04
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (199 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
GGAA
Found at i:16900 original size:397 final size:397
Alignment explanation
Indices: 15915--17083 Score: 2182
Period size: 397 Copynumber: 2.9 Consensus size: 397
15905 CAATATGGCC
*
15915 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCAATCCCAAAATCATCG-AA
*
15980 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
64 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
16045 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGA
*
16110 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCAT
193 ATGGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
16174 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
258 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
*
16239 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGA
323 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGA
16304 ATGAATGGAA
388 ATGAATGGAA
16314 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAATCATCGAACC
16379 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
16444 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
*
16509 AAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
*
16574 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAATTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
16639 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTCCCAGAATG
326 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATG
16703 AATGGAA
391 AATGGAA
* * * *
16710 AACAAGGTGCACCCATAAAGTATTGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAATCATCGAACC
16775 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
16840 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAAT
16905 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
195 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
16970 AACCCAAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
260 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
17034 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
325 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
17084 CTAATTTAAA
Statistics
Matches: 754, Mismatches: 14, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
396 340 0.45
397 354 0.47
398 25 0.03
399 35 0.05
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (397 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
GAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATG
AATGGAA
Found at i:18564 original size:18 final size:18
Alignment explanation
Indices: 18543--18604 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
18533 AGCGGTCGCA
18543 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* * *
18561 GAAGATGACGATGATGAT
1 GAAGATGAAGCTGACGAT
* *
18579 GACGATGAAGCTGGCGAT
1 GAAGATGAAGCTGACGAT
18597 GAAGATGA
1 GAAGATGA
18605 TGACGATGAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.35, T:0.18
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:18567 original size:6 final size:6
Alignment explanation
Indices: 18543--18634 Score: 67
Period size: 6 Copynumber: 15.3 Consensus size: 6
18533 AGCGGTCGCA
* * * * * *
18543 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GACGAT GAAGCT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
** * * * * *
18591 GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT GA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA
18635 TGATCCAAAC
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:18578 original size:3 final size:3
Alignment explanation
Indices: 18558--18638 Score: 72
Period size: 3 Copynumber: 27.0 Consensus size: 3
18548 TGAAGCTGAC
* * * * * ** *
18558 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
18606 GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
18639 CCAAACAAGT
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.36, C:0.06, G:0.35, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:18597 original size:36 final size:36
Alignment explanation
Indices: 18546--18622 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
18536 GGTCGCAGAA
*
18546 GATGAAGCTGACGATGAAGATGACGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
* * *
18582 GATGAAGCTGGCGATGAAGATGATGACGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
18618 GATGA
1 GATGA
18623 TGATGAAGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (36 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGAC
Found at i:18638 original size:12 final size:12
Alignment explanation
Indices: 18546--18634 Score: 88
Period size: 12 Copynumber: 7.4 Consensus size: 12
18536 GGTCGCAGAA
*
18546 GATGAAGCTGAC
1 GATGAAGATGAC
18558 GATGAAGATGAC
1 GATGAAGATGAC
*
18570 GATGATGATGAC
1 GATGAAGATGAC
* *
18582 GATGAAGCTGGC
1 GATGAAGATGAC
*
18594 GATGAAGATGAT
1 GATGAAGATGAC
* * *
18606 GACGATGATGAT
1 GATGAAGATGAC
* *
18618 GATGATGATGAA
1 GATGAAGATGAC
18630 GATGA
1 GATGA
18635 TGATCCAAAC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.36, C:0.08, G:0.35, T:0.21
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:18638 original size:18 final size:18
Alignment explanation
Indices: 18543--18634 Score: 76
Period size: 18 Copynumber: 5.1 Consensus size: 18
18533 AGCGGTCGCA
*
18543 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGACGAT
* *
18561 GAAGATGACGATGATGAT
1 GAAGATGAAGATGACGAT
* * *
18579 GACGATGAAGCTGGCGAT
1 GAAGATGAAGATGACGAT
* * *
18597 GAAGATGATGACGATGAT
1 GAAGATGAAGATGACGAT
* * *
18615 GATGATGATGATGAAGAT
1 GAAGATGAAGATGACGAT
18633 GA
1 GA
18635 TGATCCAAAC
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGATGACGAT
Found at i:20596 original size:183 final size:183
Alignment explanation
Indices: 20107--20815 Score: 1294
Period size: 183 Copynumber: 3.9 Consensus size: 183
20097 CTTTCAACAT
** * * * *
20107 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGAT-AATTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
* * * *
20172 GGTCTACAACCTATATCGACACTTTTTAATATTGTATCGGTACTTTATGTCCATATTGGAAGAAA
65 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
20237 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
130 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
20291 ATTATAATGTAATAGATAATTTGTAATATAA-CGGTATAAATATACCGGTTTTATGAGCGAATAG
1 ATTATAATGTAATAGATAATTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAG
20355 GTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAA
66 GTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAA
20420 ATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 ATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
20473 ATTATAATGTAATAGATAATTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAG
1 ATTATAATGTAATAGATAATTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAG
20538 GTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAA
66 GTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAA
20603 ATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 ATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
20656 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAA-TTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
20721 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
65 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
*
20786 AATGTGTCGATACCATTTAAAAAAGTGTCG
130 AATGTGTCGATACGATTTAAAAAAGTGTCG
20816 GTAATTTGAA
Statistics
Matches: 512, Mismatches: 11, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
182 176 0.34
183 183 0.36
184 153 0.30
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (183 bp):
ATTATAATGTAATAGATAATTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAG
GTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAA
ATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:23316 original size:25 final size:25
Alignment explanation
Indices: 23282--23346 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
23272 TTATCATTAA
23282 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
23307 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
23332 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
23347 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:23665 original size:23 final size:23
Alignment explanation
Indices: 23634--23697 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
23624 ATAGGTAAAC
*
23634 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
23657 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
23680 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
23698 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:23704 original size:23 final size:23
Alignment explanation
Indices: 23634--23706 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
23624 ATAGGTAAAC
* **
23634 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
23657 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
23680 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
23703 ATAT
1 ATAT
23707 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:24007 original size:25 final size:25
Alignment explanation
Indices: 23973--24023 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
23963 ACAACAAATC
*
23973 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
23998 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
24023 A
1 A
24024 TTTGGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:24339 original size:18 final size:18
Alignment explanation
Indices: 24318--24354 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
24308 GTAATTGGAG
24318 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
24336 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
24354 T
1 T
24355 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:24362 original size:24 final size:24
Alignment explanation
Indices: 24310--24356 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
24300 TTTCATATGT
* *
24310 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
24334 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
24357 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:24656 original size:39 final size:39
Alignment explanation
Indices: 24613--24699 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
24603 TCCGATGCTC
*
24613 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
*
24652 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
24691 ATCAAAATC
1 ATCAAAATC
24700 TACAACTTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.48, C:0.21, G:0.14, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:25084 original size:21 final size:22
Alignment explanation
Indices: 25038--25087 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
25028 AAATTACATA
25038 ACTTTTAAAAAAAGTATCGATC
1 ACTTTTAAAAAAAGTATCGATC
* * *
25060 -CTTTTTATAAAAGTATGGA-C
1 ACTTTTAAAAAAAGTATCGATC
25080 ACTTTTAA
1 ACTTTTAA
25088 TATAATAGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (22 bp):
ACTTTTAAAAAAAGTATCGATC
Found at i:27908 original size:6 final size:6
Alignment explanation
Indices: 27893--27923 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
27883 GAAATGATGA
*
27893 TAATGC TAATGG TAATGC TAATGC TAATGC T
1 TAATGC TAATGC TAATGC TAATGC TAATGC T
27924 GGTACTGCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (6 bp):
TAATGC
Found at i:28028 original size:21 final size:21
Alignment explanation
Indices: 28004--28051 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
27994 AATATGGATA
**
28004 TGGATACACGCCTGGTTACCC
1 TGGATACACGCCAAGTTACCC
* *
28025 TGGATACATGCCAAGTTATCC
1 TGGATACACGCCAAGTTACCC
28046 TGGATA
1 TGGATA
28052 TGGGCAACCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (21 bp):
TGGATACACGCCAAGTTACCC
Found at i:29749 original size:9 final size:9
Alignment explanation
Indices: 29737--29761 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
29727 AATAATGTCA
29737 TGATGTGGT
1 TGATGTGGT
29746 TGATGTGGT
1 TGATGTGGT
29755 TGATGTG
1 TGATGTG
29762 CATGTACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.44, T:0.44
Consensus pattern (9 bp):
TGATGTGGT
Found at i:31400 original size:17 final size:17
Alignment explanation
Indices: 31378--31417 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
31368 CTTCTTAAGA
31378 GACCCAGAGTGCTCGCC
1 GACCCAGAGTGCTCGCC
31395 GACCCAGAGTGCTCGCC
1 GACCCAGAGTGCTCGCC
31412 GACCCA
1 GACCCA
31418 ACCCCTCCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.20, C:0.42, G:0.28, T:0.10
Consensus pattern (17 bp):
GACCCAGAGTGCTCGCC
Found at i:31990 original size:14 final size:15
Alignment explanation
Indices: 31971--32028 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
31961 ATTATATTCA
31971 AAAATTTATAA-AAT
1 AAAATTTATAATAAT
*
31985 ATAATTTTATAATAAT
1 A-AAATTTATAATAAT
* *
32001 AAAATTAAT-TTAAT
1 AAAATTTATAATAAT
*
32015 AAAATTAATAATAA
1 AAAATTTATAATAA
32029 AATAATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
14 14 0.39
15 18 0.50
16 4 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATTTATAATAAT
Found at i:32011 original size:20 final size:21
Alignment explanation
Indices: 31978--32049 Score: 63
Period size: 20 Copynumber: 3.9 Consensus size: 21
31968 TCAAAAATTT
*
31978 ATAAAATATAATTTTATAATA
1 ATAAAATATAATTTAATAATA
31999 ATAAAAT-TAATTTAATAA-A
1 ATAAAATATAATTTAATAATA
*
32018 AT--TA-ATAA--TAA-AATA
1 ATAAAATATAATTTAATAATA
32033 ATAAAATAT-ATTTAATA
1 ATAAAATATAATTTAATA
32050 TGTACAGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 17
0.67 0.05 0.28
Matches are distributed among these distances:
14 2 0.05
15 6 0.15
17 6 0.15
18 2 0.05
19 6 0.15
20 11 0.28
21 7 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
ATAAAATATAATTTAATAATA
Found at i:32012 original size:34 final size:34
Alignment explanation
Indices: 31973--32049 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
31963 TATATTCAAA
** *
31973 AATTT-ATAAAATATAATTTTATAATAATAAAATT
1 AATTTAATAAAAT-TAATAATAAAATAATAAAATT
32007 AATTTAATAAAATTAATAATAAAATAATAAAA-T
1 AATTTAATAAAATTAATAATAAAATAATAAAATT
32040 ATATTTAATA
1 A-ATTTAATA
32050 TGTACAGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 2 0.05
34 29 0.76
35 7 0.18
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (34 bp):
AATTTAATAAAATTAATAATAAAATAATAAAATT
Found at i:36050 original size:60 final size:60
Alignment explanation
Indices: 35977--36094 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 60
35967 TATCTGAAGA
35977 GACTTGAGCAATAACAATCTGAAGGGGCAACCTTATCTTTTTGAAATCCCA-GAAAAAAGG
1 GACTTGAGCAATAACAATCTGAAGGGGCAACCTTATCTTTTTGAAAT-CCATGAAAAAAGG
*
36037 GACTTGAGCAATAACAATCTGAATGGGCAACCTTATCTTTTTGAAATCCATGAAAAAA
1 GACTTGAGCAATAACAATCTGAAGGGGCAACCTTATCTTTTTGAAATCCATGAAAAAA
36095 AGGGTAAACT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
59 3 0.05
60 53 0.95
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (60 bp):
GACTTGAGCAATAACAATCTGAAGGGGCAACCTTATCTTTTTGAAATCCATGAAAAAAGG
Found at i:40815 original size:111 final size:111
Alignment explanation
Indices: 40550--40911 Score: 512
Period size: 109 Copynumber: 3.2 Consensus size: 111
40540 TTCAGGGAAG
*
40550 ATTGAATCAGGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAGAAGAGAGATT
1 ATTGAATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTG-A-AAGAGAG---
* * * *
40615 TGTTCTGTTCCACTTCTTCTGAGGGAATATATCAGATCTAGGAAAGTTGATCC
61 GGATCTGTTCCACTTCTTCTGAGGG-A-ATATCAGATCTGGGAAAGTTGATTC
* * *
40668 ATTGAATCATGGTAGACTTGTTCCACTGTCGCTCAGGGAATATCAAATCTTGAAAGAGAGGGATC
1 ATTGAATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATC
* * * *
40733 TGTTCCGCTTCCTCTGAGGGAATATCATATCTGGGAAAGTTGATTT
66 TGTTCCACTTCTTCTGAGGGAATATCAGATCTGGGAAAGTTGATTC
* * *
40779 ATTGAATCAAGGTAGACTTGTTCCGCTGTCATTCAGGGAATATCAAATCTTG-AA-AGATGGATA
1 ATTGAATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATC
40842 TGTTCCACTTCTTCTGAGGGAATATCAGATCTGGGAAAGTTGATTC
66 TGTTCCACTTCTTCTGAGGGAATATCAGATCTGGGAAAGTTGATTC
40888 ATTGAATCAAGGTAGACTTGTTCC
1 ATTGAATCAAGGTAGACTTGTTCC
40912 ACTTACTCTG
Statistics
Matches: 223, Mismatches: 21, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
109 73 0.33
110 2 0.01
111 69 0.31
112 1 0.00
113 21 0.09
116 7 0.03
117 1 0.00
118 49 0.22
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (111 bp):
ATTGAATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATC
TGTTCCACTTCTTCTGAGGGAATATCAGATCTGGGAAAGTTGATTC
Found at i:40971 original size:66 final size:66
Alignment explanation
Indices: 40842--41818 Score: 1728
Period size: 66 Copynumber: 14.8 Consensus size: 66
40832 AAGATGGATA
* * * *
40842 TGTTCCACTT-CTTCTG-AGGGAATATCAGATCTGGGA-AAGTTGATTCATTGAATC-AAGGTAG
1 TGTTCCACTTAC-TCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAA-GCAG
40903 ACT
64 ACT
* *
40906 TGTTCCACTTACTCTGAATGGAATATCAAATCTTGGAGAAATTGATCCATTGAATCGAAGCAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
40971 T
66 T
*
40972 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGGTCCATTGAATCGAAGCAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41037 T
66 T
* * *
41038 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGCAGAAGTTGATCTATTGAATCGAAGTAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41103 T
66 T
*
41104 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCTATTGAATCGAAGCAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41169 T
66 T
*
41170 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGTAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41235 T
66 T
* *
41236 TGTTCCATTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAACAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41301 T
66 T
* *
41302 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGCAGAAGTTGATCCATTGAATCGAAGTAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41367 T
66 T
41368 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41433 T
66 T
*
41434 TTTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41499 T
66 T
*
41500 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGTAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41565 T
66 T
41566 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41631 T
66 T
*
41632 TGTTCCACTTACTCTGAAGGTAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41697 T
66 T
*
41698 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAATCAGAC
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
41763 T
66 T
41764 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAAT
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAAT
41819 TGGGATCGAA
Statistics
Matches: 876, Mismatches: 33, Indels: 6
0.96 0.04 0.01
Matches are distributed among these distances:
64 14 0.02
65 18 0.02
66 842 0.96
67 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (66 bp):
TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGTTGATCCATTGAATCGAAGCAGAC
T
Found at i:43020 original size:21 final size:23
Alignment explanation
Indices: 42984--43033 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 23
42974 CCCTCTTTTA
42984 TTTTTCTTTTCTTTTTTCCTCAT
1 TTTTTCTTTTCTTTTTTCCTCAT
*
43007 TTTTTC-TTTCTTTTTT-TTCAT
1 TTTTTCTTTTCTTTTTTCCTCAT
43028 TTTTTC
1 TTTTTC
43034 CCATTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 10 0.38
22 10 0.38
23 6 0.23
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTTCTTTTCTTTTTTCCTCAT
Found at i:43040 original size:14 final size:14
Alignment explanation
Indices: 43023--43059 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
43013 TTTCTTTTTT
43023 TTCATTTTTTCCCA
1 TTCATTTTTTCCCA
43037 TTCA-TTTTT-CCA
1 TTCATTTTTTCCCA
43049 TTCATTTTTTC
1 TTCATTTTTTC
43060 AGGCGAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 7 0.33
13 10 0.48
14 4 0.19
ACGTcount: A:0.14, C:0.24, G:0.00, T:0.62
Consensus pattern (14 bp):
TTCATTTTTTCCCA
Found at i:43057 original size:12 final size:13
Alignment explanation
Indices: 43023--43057 Score: 54
Period size: 12 Copynumber: 2.7 Consensus size: 13
43013 TTTCTTTTTT
43023 TTCATTTTTTCCCA
1 TTCA-TTTTTCCCA
43037 TTCATTTTT-CCA
1 TTCATTTTTCCCA
43049 TTCATTTTT
1 TTCATTTTT
43058 TCAGGCGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.57
13 5 0.24
14 4 0.19
ACGTcount: A:0.14, C:0.23, G:0.00, T:0.63
Consensus pattern (13 bp):
TTCATTTTTCCCA
Found at i:46608 original size:25 final size:27
Alignment explanation
Indices: 46575--46635 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
46565 AATCTATCCC
* *
46575 ATATCAAAATAGAATGAAAT-AAT-AAT
1 ATAT-AAAAAAGAAAGAAATAAATAAAT
46601 ATATAAAAAAGAAAGAAATAAATAAAT
1 ATATAAAAAAGAAAGAAATAAATAAAT
*
46628 AAATAAAA
1 ATATAAAA
46636 GAATGGAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 13 0.43
26 7 0.23
27 10 0.33
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (27 bp):
ATATAAAAAAGAAAGAAATAAATAAAT
Found at i:52586 original size:19 final size:19
Alignment explanation
Indices: 52558--52594 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
52548 AAAATCGGTC
* *
52558 ACTAATCATAAATGAATTG
1 ACTAAACATAAATCAATTG
52577 ACTAAACATAAATCAATT
1 ACTAAACATAAATCAATT
52595 TATCGATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (19 bp):
ACTAAACATAAATCAATTG
Found at i:54837 original size:20 final size:20
Alignment explanation
Indices: 54812--54904 Score: 96
Period size: 21 Copynumber: 4.5 Consensus size: 20
54802 TTTTCCCAAT
54812 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
54832 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGTAAA
54852 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGTAAA
* ** *
54873 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
54894 TCGCAATGCGA
1 TCGCAATGCGA
54905 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:54854 original size:41 final size:41
Alignment explanation
Indices: 54809--54904 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
54799 CGATTTTCCC
54809 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
54850 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
*
54891 AAATCGCAATGCGA
1 AATTCGCAATGCGA
54905 TACTGACTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.19
Consensus pattern (41 bp):
AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
Found at i:54858 original size:21 final size:20
Alignment explanation
Indices: 54812--54904 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
54802 TTTTCCCAAT
*
54812 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGGAAA
* **
54832 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGGAAA
*
54852 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGGAAA
* **
54873 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGG-AAA
54894 TCGCAATGCGA
1 TCGCAATGCGA
54905 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.50
21 29 0.50
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGGAAA
Found at i:54917 original size:41 final size:41
Alignment explanation
Indices: 54831--54965 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
54821 GAATAAGTAA
* * *
54831 ATCGCAACGCGAATTGGGAAATTCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
54872 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
54913 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
54954 TTCGCAACGCGA
1 ATCGCAACGCGA
54966 TACTGACTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:54918 original size:20 final size:20
Alignment explanation
Indices: 54893--54986 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
54883 AATTGGGAAA
*
54893 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
54913 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
54934 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
54954 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
54974 TTCGCAACGCGAT
1 ATCGCAACGCGAT
54987 TTACTTAGCG
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 46 0.77
21 14 0.23
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:55546 original size:19 final size:19
Alignment explanation
Indices: 55508--55574 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
55498 TTCGAGAATG
*
55508 AAAATCGCAAAGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
55528 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
55547 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
55566 AAAATCGCA
1 AAAATCGCA
55575 TTGCGATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 30 0.75
20 10 0.25
ACGTcount: A:0.49, C:0.24, G:0.16, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:55592 original size:19 final size:19
Alignment explanation
Indices: 55570--55734 Score: 134
Period size: 19 Copynumber: 9.1 Consensus size: 19
55560 GAAACCAAAA
*
55570 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
55589 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
55608 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
55627 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * **
55641 TCTCGTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
55660 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * **
55674 TCTCATTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
* *
55693 TCCGCGTTGCAATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
55713 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
55733 TC
1 TC
55735 AACCAAAAGA
Statistics
Matches: 116, Mismatches: 18, Indels: 24
0.73 0.11 0.15
Matches are distributed among these distances:
14 18 0.16
16 4 0.03
17 5 0.04
19 60 0.52
20 28 0.24
21 1 0.01
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:55626 original size:38 final size:33
Alignment explanation
Indices: 55575--55709 Score: 144
Period size: 33 Copynumber: 3.9 Consensus size: 33
55565 CAAAATCGCA
*
55575 TTGCGATTTTCATTTCGCGTTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGA--TTC---TCTCG
55613 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* ** *
55646 TCGCGATAGTCATTTCGCGTTGCGATTCTCTCA
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
** *
55679 TTGCGATAGTCATTTCCGCGTTGCAATTCTC
1 TTGCGATTTTCATTT-CGCGTTGCGATTCTC
55710 ATTATCTCGT
Statistics
Matches: 89, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
33 47 0.53
34 14 0.16
36 3 0.03
38 25 0.28
ACGTcount: A:0.13, C:0.24, G:0.21, T:0.42
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:55711 original size:20 final size:20
Alignment explanation
Indices: 55688--55734 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
55678 ATTGCGATAG
55688 TCATTTCCGCGTTGCAATTC
1 TCATTTCCGCGTTGCAATTC
* * *
55708 TCATTAT-CTCGTTGCGATTT
1 TCATT-TCCGCGTTGCAATTC
55728 TCATTTC
1 TCATTTC
55735 AACCAAAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.05
20 20 0.91
21 1 0.05
ACGTcount: A:0.15, C:0.26, G:0.13, T:0.47
Consensus pattern (20 bp):
TCATTTCCGCGTTGCAATTC
Found at i:57783 original size:42 final size:42
Alignment explanation
Indices: 57723--57845 Score: 115
Period size: 42 Copynumber: 2.9 Consensus size: 42
57713 GCCCGACTCG
* * *
57723 CCTATCATCCATCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCATCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* *
57765 CCTATCATTCC-TCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCA-TCCATCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
57807 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCATCAAGA-GTCCACTCCCACCGTTCAAGAG
57846 CCCGATTCAC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.03
42 58 0.87
43 7 0.10
ACGTcount: A:0.24, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCATCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:57803 original size:21 final size:21
Alignment explanation
Indices: 57779--57845 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
57769 TCATTCCTCG
57779 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
57800 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
57821 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
57842 AGAG
1 AGAG
57846 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:59217 original size:14 final size:14
Alignment explanation
Indices: 59198--59233 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
59188 ATTGTTTAAT
59198 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
59212 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
59226 TGATTTGT
1 TGATTTGT
59234 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:59434 original size:19 final size:19
Alignment explanation
Indices: 59412--59529 Score: 67
Period size: 19 Copynumber: 6.7 Consensus size: 19
59402 CGAAATTAAA
59412 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
59431 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
59446 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
59464 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
59479 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* * ** *
59497 TTCTCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
59516 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
59530 GGACATTAAG
Statistics
Matches: 73, Mismatches: 15, Indels: 21
0.67 0.14 0.19
Matches are distributed among these distances:
14 17 0.23
16 6 0.08
17 6 0.08
19 35 0.48
20 9 0.12
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:59458 original size:33 final size:33
Alignment explanation
Indices: 59416--59509 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
59406 ATTAAATTCG
59416 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
59449 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
59482 CGTTGCGATTTTCATTTCTCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
59510 AGTAATTTCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:61811 original size:12 final size:12
Alignment explanation
Indices: 61794--61818 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
61784 TTCTTCGGGA
61794 CTTTTTCTTCTT
1 CTTTTTCTTCTT
61806 CTTTTTCTTCTT
1 CTTTTTCTTCTT
61818 C
1 C
61819 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:63312 original size:14 final size:14
Alignment explanation
Indices: 63293--63329 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
63283 CATCAATTAA
63293 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
63307 ACAAATCATCTTTT
1 ACAAATCAACATTT
63321 ACAAATCAA
1 ACAAATCAA
63330 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:63814 original size:20 final size:19
Alignment explanation
Indices: 63780--63834 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
63770 TTGCGATTTT
*
63780 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
63799 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
63819 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
63835 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:64332 original size:18 final size:18
Alignment explanation
Indices: 64306--64350 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
64296 GTCGATCAGA
*
64306 TGATGGCTCTAGGTGAGG
1 TGATGGCTCTAGGCGAGG
* *
64324 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTAGGCGAGG
64342 TGATGGCTC
1 TGATGGCTC
64351 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.16, G:0.42, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTAGGCGAGG
Found at i:65691 original size:20 final size:20
Alignment explanation
Indices: 65666--65703 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65656 AATAGTTTCT
65666 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
65686 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
65704 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:65992 original size:22 final size:22
Alignment explanation
Indices: 65967--66010 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
65957 GATTTAGATA
65967 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
65989 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
66011 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:66223 original size:20 final size:20
Alignment explanation
Indices: 66198--66291 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
66188 GATTATGTAT
66198 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
66218 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
66238 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
66259 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
66279 TATCGCATTGCGA
1 TATCGCGTTGCGA
66292 TTTTCTCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:66263 original size:41 final size:42
Alignment explanation
Indices: 66218--66353 Score: 118
Period size: 41 Copynumber: 3.3 Consensus size: 42
66208 CGAAAGTCAG
* * * *
66218 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTAT
1 TATCGCGTTGCGAAAGTAAGTATCGCATTGCGATTTTCTCAA
* * *
66259 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCTCAA
1 TATCGCGTTGCGAAAGTAAGTATCGCATTGCGATTTTCTCAA
** ** * *
66301 T-TCGCGTTGCG-ATTTACTTATTCGCATTGCGAATTTCCCAA
1 TATCGCGTTGCGAAAGTAAGTA-TCGCATTGCGATTTTCTCAA
66342 T-TCGCGTTGCGA
1 TATCGCGTTGCGA
66354 TTTACTTATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
40 3 0.04
41 70 0.92
42 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (42 bp):
TATCGCGTTGCGAAAGTAAGTATCGCATTGCGATTTTCTCAA
Found at i:66292 original size:20 final size:20
Alignment explanation
Indices: 66178--66292 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
66168 CGCTTTGAAA
*
66178 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
66199 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
66219 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
66239 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
66260 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
66280 ATCGCATTGCGAT
1 ATCGCATTGCGAT
66293 TTTCTCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:66325 original size:20 final size:20
Alignment explanation
Indices: 66281--66373 Score: 105
Period size: 21 Copynumber: 4.5 Consensus size: 20
66271 ATAGTCAGTA
*
66281 TCGCATTGCGATTTTCTCAAT
1 TCGCATTGCGATTTACT-AAT
* *
66302 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTAAT
* *
66322 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTAAT
* *
66343 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTAAT
66363 TCGCATTGCGA
1 TCGCATTGCGA
66374 ATTGGGAAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.47
21 31 0.53
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACTAAT
Found at i:66354 original size:41 final size:41
Alignment explanation
Indices: 66281--66376 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
66271 ATAGTCAGTA
* *
66281 TCGCATTGCGATTTTCTCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
66322 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
66363 TCGCATTGCGAATT
1 TCGCATTGCGAATT
66377 GGGAAAATCG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:71371 original size:22 final size:22
Alignment explanation
Indices: 71338--71389 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
71328 CTCGGAGGGA
71338 ACCGA-TTCCCCCCAAAGGGGT
1 ACCGATTTCCCCCCAAAGGGGT
*
71359 ACCGATTTCCCCCCAAGGGGGT
1 ACCGATTTCCCCCCAAAGGGGT
71381 ACCGATTTC
1 ACCGATTTC
71390 TCCTGTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 5 0.17
22 24 0.83
ACGTcount: A:0.21, C:0.37, G:0.23, T:0.19
Consensus pattern (22 bp):
ACCGATTTCCCCCCAAAGGGGT
Found at i:75516 original size:21 final size:21
Alignment explanation
Indices: 75492--75550 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
75482 ACAAAAATGA
75492 AGCAAGAGAAGCAGAGAGAGC
1 AGCAAGAGAAGCAGAGAGAGC
* **
75513 AGCAACAGAAGCAGCTAGAGC
1 AGCAAGAGAAGCAGAGAGAGC
*
75534 AG-TAGCAGAAGCAGAGA
1 AGCAAG-AGAAGCAGAGA
75551 AAGAAACAAC
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
20 1 0.03
21 29 0.97
ACGTcount: A:0.46, C:0.17, G:0.34, T:0.03
Consensus pattern (21 bp):
AGCAAGAGAAGCAGAGAGAGC
Found at i:76257 original size:43 final size:43
Alignment explanation
Indices: 76051--76295 Score: 223
Period size: 43 Copynumber: 5.8 Consensus size: 43
76041 ACGATAAAAT
* * * * **
76051 CGCCACTAAATCTCAACACTTATTGTGGCGTTTGAGATAA-AAA
1 CGCCGCTAAATATCAACACCTATTGCGGCGTTTG-TCTAACAAA
* * * * **
76094 CGTCGCTAAATCTCAACACCTACTGTGGCGTTTGTGGGAA-AAA
1 CGCCGCTAAATATCAACACCTATTGCGGCGTTTGT-CTAACAAA
* * * *
76137 CACCACTAAACATCAACACCTATTGCGGTGTTTGTCTAACAAA
1 CGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTAACAAA
* * *
76180 CGCTGCTAAATATCAACACCTATTGCAGTGTTTGTCTAACAAA
1 CGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTAACAAA
76223 CGCCGCTAAATATCAACACCTATTGCGGCGTTTGT-T--CAAA
1 CGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTAACAAA
* * *
76263 CACCGCTATATATCGTA-ACCTATTGCGGCGTTT
1 CGCCGCTAAATATC-AACACCTATTGCGGCGTTT
76296 TTCGTTAACA
Statistics
Matches: 171, Mismatches: 28, Indels: 9
0.82 0.13 0.04
Matches are distributed among these distances:
40 32 0.19
41 1 0.01
42 3 0.02
43 135 0.79
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTAACAAA
Found at i:76872 original size:2 final size:2
Alignment explanation
Indices: 76867--76897 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
76857 TCTCAAGAAA
*
76867 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76898 AGTGGAACTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:82002 original size:19 final size:19
Alignment explanation
Indices: 81975--82021 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
81965 GGAGAAATTG
*
81975 TCTTTTGCAACATCACCCT
1 TCTTCTGCAACATCACCCT
81994 TCTTCTGCAACATCACCCT
1 TCTTCTGCAACATCACCCT
82013 TCTTCTGCA
1 TCTTCTGCA
82022 GGGTACTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.19, C:0.38, G:0.06, T:0.36
Consensus pattern (19 bp):
TCTTCTGCAACATCACCCT
Found at i:88203 original size:24 final size:23
Alignment explanation
Indices: 88167--88214 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
88157 CAGTTGATTA
* *
88167 GTTGTAACTGTTTCTGGTTAAGTT
1 GTTGCAACCGTTTCTGGTT-AGTT
*
88191 GTTGCAACCGTTTCTTGTTAGTT
1 GTTGCAACCGTTTCTGGTTAGTT
88214 G
1 G
88215 GGTTGTTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.15, C:0.12, G:0.25, T:0.48
Consensus pattern (23 bp):
GTTGCAACCGTTTCTGGTTAGTT
Found at i:92596 original size:19 final size:19
Alignment explanation
Indices: 92574--92612 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
92564 CATTTATTTT
92574 TTTAAAAAAATAGTTGAAA
1 TTTAAAAAAATAGTTGAAA
* * *
92593 TTTAAATATATATTTGAAA
1 TTTAAAAAAATAGTTGAAA
92612 T
1 T
92613 AAAATGGTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (19 bp):
TTTAAAAAAATAGTTGAAA
Found at i:93144 original size:24 final size:24
Alignment explanation
Indices: 93091--93147 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
93081 CACCACAACT
* * *
93091 CATATAAATTGCACCGAAGTGTCG
1 CATAGAAATTGCACCGAAGTGCCA
*
93115 CGTAGAAATTGCACCGAAGTGCCA
1 CATAGAAATTGCACCGAAGTGCCA
93139 CATAGAAAT
1 CATAGAAAT
93148 GTTCCGAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (24 bp):
CATAGAAATTGCACCGAAGTGCCA
Found at i:93163 original size:23 final size:23
Alignment explanation
Indices: 93136--93225 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 23
93126 CACCGAAGTG
* *
93136 CCACATAGAAATGTTCCGAAGGA
1 CCACATAGAAATGTCCCGAAGAA
* * *
93159 TCACATAGTATTGTCCCGAAGAA
1 CCACATAGAAATGTCCCGAAGAA
*
93182 CCACGTAGAAATGTCCCGAA-ATA
1 CCACATAGAAATGTCCCGAAGA-A
* *
93205 CCACTTAGAATTGTCCCGAAG
1 CCACATAGAAATGTCCCGAAG
93226 GACCGTGTAG
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
22 1 0.02
23 53 0.98
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (23 bp):
CCACATAGAAATGTCCCGAAGAA
Found at i:93236 original size:23 final size:23
Alignment explanation
Indices: 93168--93237 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
93158 ATCACATAGT
*
93168 ATTGTCCCGAAGAACCACGTAGA
1 ATTGTCCCGAAGAACCATGTAGA
*
93191 AATGTCCCGAA-ATACCACT-TAGA
1 ATTGTCCCGAAGA-ACCA-TGTAGA
* *
93214 ATTGTCCCGAAGGACCGTGTAGA
1 ATTGTCCCGAAGAACCATGTAGA
93237 A
1 A
93238 CTCTCGACTC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
22 2 0.05
23 36 0.95
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.20
Consensus pattern (23 bp):
ATTGTCCCGAAGAACCATGTAGA
Found at i:93237 original size:46 final size:46
Alignment explanation
Indices: 93136--93225 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 46
93126 CACCGAAGTG
* * * * *
93136 CCACATAGAAATGTTCCGAAGGATCACATAGTATTGTCCCGAAGAA
1 CCACGTAGAAATGTCCCGAAAGACCACATAGAATTGTCCCGAAGAA
* *
93182 CCACGTAGAAATGTCCCGAAATACCACTTAGAATTGTCCCGAAG
1 CCACGTAGAAATGTCCCGAAAGACCACATAGAATTGTCCCGAAG
93226 GACCGTGTAG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (46 bp):
CCACGTAGAAATGTCCCGAAAGACCACATAGAATTGTCCCGAAGAA
Found at i:103974 original size:13 final size:13
Alignment explanation
Indices: 103956--103981 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103946 CATGGTGTTT
103956 CAAAAGTATCATC
1 CAAAAGTATCATC
103969 CAAAAGTATCATC
1 CAAAAGTATCATC
103982 GTTTAATACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
CAAAAGTATCATC
Found at i:105134 original size:200 final size:199
Alignment explanation
Indices: 104801--105386 Score: 845
Period size: 200 Copynumber: 2.9 Consensus size: 199
104791 CTTATGTTTC
* * * * *
104801 CCAAACGAGATGCACCCAGAATGTATCGATACACATATCAAAGGTATCGATTCTTACAACTTCGA
1 CCAAACGAGATGCACACAGAAAGTATCGATACACATATCAAAAGTATCGATTCTTAAAACTTAGA
*
104866 AACCAATTAC-TTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCGGTTCAATG
66 AACCAATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCGGTTTAATG
* *
104930 ACAAAATACGTAAACATAAAGTTTCGATACTTTTTGTATATATATCGATACTTTTGGTCAAGTAT
131 ACAAAATACGTAAACATAAAGTTTCGATACTTTTTTTATATGTATCGATACTTTTGGTCAAGTAT
104995 GCTT
196 GCTT
* * * *
104999 CACAAACGAGATGCACACAGAAAGTATCGATATACTTATGAAAAGTATCGATTCTTAAAACTTTG
1 C-CAAACGAGATGCACACAGAAAGTATCGATACACATATCAAAAGTATCGATTCTTAAAACTTAG
* *
105064 AAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATATCGGTTTAAT
65 AAACCAATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCGGTTTAAT
* * * **
105129 GACAAAATATGTAAACATAAAGTTTCAACACTTTTTTTATATGTATCGATACTTTTGGTCCTGTA
130 GACAAAATACGTAAACATAAAGTTTCGATACTTTTTTTATATGTATCGATACTTTTGGTCAAGTA
105194 TGCTT
195 TGCTT
* * ** * * *
105199 CCTAAACAATATGCATGCAGAAAGTATCAATACACGTATCAAAAGAATCGATTCTTAAAACTTAG
1 CC-AAACGAGATGCACACAGAAAGTATCGATACACATATCAAAAGTATCGATTCTTAAAACTTAG
* * * *
105264 AAACTAATTACTTTAAAGTAATAGGTAAATTTACAATAT-AGCGGTAAAAATATACCGATGTAAT
65 AAACCAATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCGGTTTAAT
* *
105328 GACAAAATACGTAAACATAAAGTTTCGATA-TTTTTTTATATGTATCAATATTTTTGGTC
130 GACAAAATACGTAAACATAAAGTTTCGATACTTTTTTTATATGTATCGATACTTTTGGTC
105387 CAATATGAAA
Statistics
Matches: 346, Mismatches: 39, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
198 28 0.08
199 115 0.33
200 203 0.59
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (199 bp):
CCAAACGAGATGCACACAGAAAGTATCGATACACATATCAAAAGTATCGATTCTTAAAACTTAGA
AACCAATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCGGTTTAATG
ACAAAATACGTAAACATAAAGTTTCGATACTTTTTTTATATGTATCGATACTTTTGGTCAAGTAT
GCTT
Found at i:108293 original size:6 final size:6
Alignment explanation
Indices: 108282--108332 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
108272 TTTATGCAGT
* * *
108282 TTTCAA TTTCAA TTTCAA TTTTAA TTTGAG TTTCAA TTTCAA TTTCAA
1 TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA
108330 TTT
1 TTT
108333 TGGCTCCACT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.55
Consensus pattern (6 bp):
TTTCAA
Found at i:110582 original size:20 final size:21
Alignment explanation
Indices: 110559--110602 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
110549 GCTTGGATAT
110559 GTGTTC-TAACACTTCTTCAA
1 GTGTTCTTAACACTTCTTCAA
110579 GTG-TCTTAACACTTCTTCAA
1 GTGTTCTTAACACTTCTTCAA
110599 GTGT
1 GTGT
110603 CTTGAACTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (21 bp):
GTGTTCTTAACACTTCTTCAA
Found at i:110603 original size:20 final size:20
Alignment explanation
Indices: 110565--110605 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
110555 ATATGTGTTC
110565 TAACACTTCTTCAAGTGTCT
1 TAACACTTCTTCAAGTGTCT
110585 TAACACTTCTTCAAGTGTCT
1 TAACACTTCTTCAAGTGTCT
110605 T
1 T
110606 GAACTTGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (20 bp):
TAACACTTCTTCAAGTGTCT
Found at i:115133 original size:247 final size:247
Alignment explanation
Indices: 114685--115397 Score: 1097
Period size: 247 Copynumber: 2.9 Consensus size: 247
114675 TCGATTAAAT
* * * *
114685 ATAACATGTTGAAAATTGACAAAACCAGTTTCAATAATAGCGCCTATAAAGTATCGATACCTTAG
1 ATAACAGGTTGAAAATTGACAAAATCGGTTTCAATAATAGCGCCTATAAAGTATCGATACCTCAG
* * *
114750 ACACATGTATCGATACATGATAATATAACATGTTGAAAATTGACAAAACTAGTTTCAATATGAAA
66 ACACATGTATCGATACATAACAATATAACGTGTTGAAAATTGACAAAACTAGTTTCAATATGAAA
* * * * *
114815 AAATCGATAAAGCGCTACCGGTTTACACAAAAATGAAACGTCTTGAAAGTATCGATACCTTACAC
131 AAACCGGTAAAGCGCTACTGGTTTACACAAAAATGAAACATCTCGAAAGTATCGATACCTTACAC
114880 AAAAGTATCGACACTTCGGTAAGGGTAAGGGTATCGATTAAAAATAAATAAC
196 AAAAGTATCGACACTTCGGTAAGGGTAAGGGTATCGATTAAAAATAAATAAC
* * *
114932 ATAACAGGCTGAAAATTGACAAAATCGGTTTCAATAATAGCGCTTATAACGTATCGATACCTCAG
1 ATAACAGGTTGAAAATTGACAAAATCGGTTTCAATAATAGCGCCTATAAAGTATCGATACCTCAG
114997 ACACATGTATCGATACATAACAATATAACGTGTTGAAAATTGACAAAACTAGTTTCAATATGAAA
66 ACACATGTATCGATACATAACAATATAACGTGTTGAAAATTGACAAAACTAGTTTCAATATGAAA
* * * *
115062 AAACCGGTAAAGCGCTACTGGTTTTCACAAAAATGAAACATCTCGAAAGTATCAATATCTTACAT
131 AAACCGGTAAAGCGCTACTGGTTTACACAAAAATGAAACATCTCGAAAGTATCGATACCTTACAC
* * *
115127 AAAAGTATCGACACTTCGATAAGGGTAATGGTATCGATTAAATATAAATAAC
196 AAAAGTATCGACACTTCGGTAAGGGTAAGGGTATCGATTAAAAATAAATAAC
* * *
115179 ATAACAGATTGAAAATTGATAAAATCGGTTTCAATAATAGCGCCTATAAAGTATCGATACCTCAT
1 ATAACAGGTTGAAAATTGACAAAATCGGTTTCAATAATAGCGCCTATAAAGTATCGATACCTCAG
* * *
115244 ACACATGTATTGATACATAACAATATAACAG-GTTGAAAATTGACAAAACTGGTTTCAATATGAC
66 ACACATGTATCGATACATAACAATATAAC-GTGTTGAAAATTGACAAAACTAGTTTCAATATGAA
* * * * *
115308 GAAACCAGTAAAGCGCTA-TCGGTTTACACAAAAACGAAACCTCTCGAAAGTATTGATACCTTAC
130 AAAACCGGTAAAGCGCTACT-GGTTTACACAAAAATGAAACATCTCGAAAGTATCGATACCTTAC
115372 ACAAAAGTATCGACACTTCGGTAAGG
194 ACAAAAGTATCGACACTTCGGTAAGG
115398 TTATTCAATA
Statistics
Matches: 423, Mismatches: 41, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
246 1 0.00
247 421 1.00
248 1 0.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (247 bp):
ATAACAGGTTGAAAATTGACAAAATCGGTTTCAATAATAGCGCCTATAAAGTATCGATACCTCAG
ACACATGTATCGATACATAACAATATAACGTGTTGAAAATTGACAAAACTAGTTTCAATATGAAA
AAACCGGTAAAGCGCTACTGGTTTACACAAAAATGAAACATCTCGAAAGTATCGATACCTTACAC
AAAAGTATCGACACTTCGGTAAGGGTAAGGGTATCGATTAAAAATAAATAAC
Found at i:117764 original size:256 final size:256
Alignment explanation
Indices: 117359--117821 Score: 736
Period size: 256 Copynumber: 1.8 Consensus size: 256
117349 ACACACACAC
*
117359 ATATATTCCATACTTATAATTGTGAAACCTATTACTTTAAAGTAATAGATTAATTTACAATGAAA
1 ATATATTCCATACTTATAATTGTGAAACATATTACTTTAAAGTAATAGATTAATTTACAATGAAA
* * *
117424 ACGGTTAAAGTCAATCGGTATCATGATAATATGCGTAAATAATTTACACGATAATATATTGATAA
66 ACGGTTAAAGTCAATCGGTATCATGATAATATGCATAAACAATGTACACGATAATATATTGATAA
*
117489 AGCTTGATAAAAAATCAAGTAATTAA-CTAGTTATGTTATCG-TCATATTTCTAAGGCTCCATCA
131 AGATTGATAAAAAATCAAGTAATTAATC-AGTTATGTTATCGTTCA-ATTTCTAAGGCTCCATCA
117552 GCTTAAACTTTGGTTAATTCCACATAAAGGCTCAAACAATCTGCACACAAAATGTATCGATAT
194 GCTTAAACTTTGGTTAATTCCACATAAAGGCTCAAACAATCTGCACACAAAATGTATCGATAT
* *
117615 ATATATTTCATACTTATAATT-TCGAAACATATTACTTTAAAGTAATAGGTTAATTT-CAAATGA
1 ATATATTCCATACTTATAATTGT-GAAACATATTACTTTAAAGTAATAGATTAATTTAC-AATGA
* * *
117678 AAACGGTTAAAGTTAATTGGTATCATGATAATATGCATAAACAATGTACACGATAATATGTTGAT
64 AAACGGTTAAAGTCAATCGGTATCATGATAATATGCATAAACAATGTACACGATAATATATTGAT
* * * *
117743 AAAGATTGGTAACAAATCAAGTAATTAATCGGTTATGTTATCGTTGAATTTCTAAGGCTCCATCA
129 AAAGATTGATAAAAAATCAAGTAATTAATCAGTTATGTTATCGTTCAATTTCTAAGGCTCCATCA
117808 GCTTAAACTTTGGT
194 GCTTAAACTTTGGT
117822 AACATTTTAA
Statistics
Matches: 189, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
255 2 0.01
256 184 0.97
257 3 0.02
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (256 bp):
ATATATTCCATACTTATAATTGTGAAACATATTACTTTAAAGTAATAGATTAATTTACAATGAAA
ACGGTTAAAGTCAATCGGTATCATGATAATATGCATAAACAATGTACACGATAATATATTGATAA
AGATTGATAAAAAATCAAGTAATTAATCAGTTATGTTATCGTTCAATTTCTAAGGCTCCATCAGC
TTAAACTTTGGTTAATTCCACATAAAGGCTCAAACAATCTGCACACAAAATGTATCGATAT
Found at i:118165 original size:224 final size:226
Alignment explanation
Indices: 117731--118194 Score: 619
Period size: 224 Copynumber: 2.1 Consensus size: 226
117721 ATGTACACGA
* * * * *
117731 TAATATGTTGATAAAGATTGGTAACAAATCAAGTAATTAATCGGTTATGTTATCGTTGAATTTCT
1 TAATATGTT-ATTAAGATTGATAACAAATCAAGTAATTAATCGCTTATGTTATAGTCGAATTTCT
* * * *
117796 AAGGCTCCATCAGCTTAAACTTTGGTAACATTTTAACTGTTACCGGATATGTTGATAATATTGAT
65 AAGACTCCATCAGCTTAAACTTTGGTAACATTTTAACTGTTACCGAATATGTTAATAATATCGAT
* * *
117861 AACAAATTAAGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAA
130 AACAAATTAAGTAATTAACATATTTTGTTATCATCGAATTTCTAAGGCCCCATCAGCTTTAAAAA
*** *
117926 GGTGTTACCTATTACGTTACATAAGCGCTACC
195 GGCACTACATATTACGTTACATAAGCGCTACC
* *
117958 TAATATGTTATTATGATTGATAACAAATCAAGTAATTAA-C-CTTATGTTATAGTCGGATTTCTA
1 TAATATGTTATTAAGATTGATAACAAATCAAGTAATTAATCGCTTATGTTATAGTCGAATTTCTA
** ** *
118021 AGACTCTGTCAGCTTAAACTTTGGTAACATTTTAGGTGTTACCTAATATGTTAATAATACTCG-T
66 AGACTCCATCAGCTTAAACTTTGGTAACATTTTAACTGTTACCGAATATGTTAATAATA-TCGAT
* * * *
118085 AATAAATTAAGTAATTAACATATTTTGTTATCATCGAATTTTTAAGGCCTCGTCAGCTTTAAAAA
130 AACAAATTAAGTAATTAACATATTTTGTTATCATCGAATTTCTAAGGCCCCATCAGCTTTAAAAA
* *
118150 TGCACTACATATTACGTTACATAAGCGCTATC
195 GGCACTACATATTACGTTACATAAGCGCTACC
*
118182 TAATATATTATTA
1 TAATATGTTATTA
118195 CCGGTATATC
Statistics
Matches: 206, Mismatches: 30, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
224 167 0.81
225 3 0.01
226 27 0.13
227 9 0.04
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (226 bp):
TAATATGTTATTAAGATTGATAACAAATCAAGTAATTAATCGCTTATGTTATAGTCGAATTTCTA
AGACTCCATCAGCTTAAACTTTGGTAACATTTTAACTGTTACCGAATATGTTAATAATATCGATA
ACAAATTAAGTAATTAACATATTTTGTTATCATCGAATTTCTAAGGCCCCATCAGCTTTAAAAAG
GCACTACATATTACGTTACATAAGCGCTACC
Found at i:119722 original size:60 final size:60
Alignment explanation
Indices: 119589--119713 Score: 146
Period size: 60 Copynumber: 2.1 Consensus size: 60
119579 AGTAGGTGAT
* * * *
119589 CATTTTGTAATTTTTAATATTCGGAGGACTCAATAAAGCAACTCTTTATAGTCGGGAGAC
1 CATTTTATAACTTTTAATATTCGGAGGACTCAATAAAGCAACTATCTATAGTCGGGAGAC
** * *
119649 TGTTTTATAACTTTTAAT-TGTCGGAGGACTCAATAAAGCAA-TATACTATAGTTGGGGGAC
1 CATTTTATAACTTTTAATAT-TCGGAGGACTCAATAAAGCAACTAT-CTATAGTCGGGAGAC
119709 CATTT
1 CATTT
119714 GTGTACTTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
59 3 0.06
60 50 0.94
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (60 bp):
CATTTTATAACTTTTAATATTCGGAGGACTCAATAAAGCAACTATCTATAGTCGGGAGAC
Found at i:119976 original size:26 final size:25
Alignment explanation
Indices: 119933--119981 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
119923 AAAATGTAAT
119933 TACATAAAAACAGAAAAATATTAGAG
1 TACATAAAAACAGAAAAA-ATTAGAG
* **
119959 TACATATAAACATTAAAAATTAG
1 TACATAAAAACAGAAAAAATTAG
119982 CTAGCAAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.25
26 15 0.75
ACGTcount: A:0.59, C:0.08, G:0.08, T:0.24
Consensus pattern (25 bp):
TACATAAAAACAGAAAAAATTAGAG
Found at i:120973 original size:244 final size:244
Alignment explanation
Indices: 120544--121033 Score: 980
Period size: 244 Copynumber: 2.0 Consensus size: 244
120534 ATCTTAAAAA
120544 ATTACACTCTAACATAAAATTTTATATGTCTCAATAAATAATACTGCTAAAAAAGTTTTAATTAA
1 ATTACACTCTAACATAAAATTTTATATGTCTCAATAAATAATACTGCTAAAAAAGTTTTAATTAA
120609 ATTTAATAAAACCAGTTTTTTCAAGTCATTGAAGCATAAGGCACGCGTGATGCAGGTGTACTGCA
66 ATTTAATAAAACCAGTTTTTTCAAGTCATTGAAGCATAAGGCACGCGTGATGCAGGTGTACTGCA
120674 TGCAACACGTAAATGAAGTTTTCGGGTTAACTATCAAATTCAATACACTTGTTTCATACCTATTT
131 TGCAACACGTAAATGAAGTTTTCGGGTTAACTATCAAATTCAATACACTTGTTTCATACCTATTT
120739 GCAACTTTAAATAGAAAGTTTTCAACAAATTAATTATGACAATTCATAC
196 GCAACTTTAAATAGAAAGTTTTCAACAAATTAATTATGACAATTCATAC
120788 ATTACACTCTAACATAAAATTTTATATGTCTCAATAAATAATACTGCTAAAAAAGTTTTAATTAA
1 ATTACACTCTAACATAAAATTTTATATGTCTCAATAAATAATACTGCTAAAAAAGTTTTAATTAA
120853 ATTTAATAAAACCAGTTTTTTCAAGTCATTGAAGCATAAGGCACGCGTGATGCAGGTGTACTGCA
66 ATTTAATAAAACCAGTTTTTTCAAGTCATTGAAGCATAAGGCACGCGTGATGCAGGTGTACTGCA
120918 TGCAACACGTAAATGAAGTTTTCGGGTTAACTATCAAATTCAATACACTTGTTTCATACCTATTT
131 TGCAACACGTAAATGAAGTTTTCGGGTTAACTATCAAATTCAATACACTTGTTTCATACCTATTT
120983 GCAACTTTAAATAGAAAGTTTTCAACAAATTAATTATGACAATTCATAC
196 GCAACTTTAAATAGAAAGTTTTCAACAAATTAATTATGACAATTCATAC
121032 AT
1 AT
121034 ACATGCTTAT
Statistics
Matches: 246, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
244 246 1.00
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.34
Consensus pattern (244 bp):
ATTACACTCTAACATAAAATTTTATATGTCTCAATAAATAATACTGCTAAAAAAGTTTTAATTAA
ATTTAATAAAACCAGTTTTTTCAAGTCATTGAAGCATAAGGCACGCGTGATGCAGGTGTACTGCA
TGCAACACGTAAATGAAGTTTTCGGGTTAACTATCAAATTCAATACACTTGTTTCATACCTATTT
GCAACTTTAAATAGAAAGTTTTCAACAAATTAATTATGACAATTCATAC
Found at i:123407 original size:29 final size:29
Alignment explanation
Indices: 123375--123431 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
123365 TATATTTCTA
*
123375 ATTAACTACCAACCTTCATTTTATTGCAT
1 ATTAACCACCAACCTTCATTTTATTGCAT
* * *
123404 ATTAACCACTAACTTTTATTTTATTGCA
1 ATTAACCACCAACCTTCATTTTATTGCA
123432 CTCTAACTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.44
Consensus pattern (29 bp):
ATTAACCACCAACCTTCATTTTATTGCAT
Found at i:125325 original size:26 final size:26
Alignment explanation
Indices: 125296--125360 Score: 121
Period size: 26 Copynumber: 2.5 Consensus size: 26
125286 CTGAGCTTGA
125296 CTCGACTCGAAAATTCTGAAATGAAG
1 CTCGACTCGAAAATTCTGAAATGAAG
125322 CTCGACTCGAAAATTCTGAAATGAAG
1 CTCGACTCGAAAATTCTGAAATGAAG
*
125348 TTCGACTCGAAAA
1 CTCGACTCGAAAA
125361 CTCGCGAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.23
Consensus pattern (26 bp):
CTCGACTCGAAAATTCTGAAATGAAG
Found at i:127361 original size:10 final size:10
Alignment explanation
Indices: 127337--127376 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
127327 TTAAATAATA
127337 AATAAAAATG
1 AATAAAAATG
127347 CAATAAAAATG
1 -AATAAAAATG
* *
127358 AATAAAATTT
1 AATAAAAATG
127368 AATAAAAAT
1 AATAAAAAT
127377 ATAATGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.25
Consensus pattern (10 bp):
AATAAAAATG
Found at i:128559 original size:10 final size:11
Alignment explanation
Indices: 128536--128562 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
128526 AAAATTAAAA
128536 TTTAATATTTT
1 TTTAATATTTT
128547 TTTAATATTTT
1 TTTAATATTTT
128558 TTTAA
1 TTTAA
128563 AATTAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTAATATTTT
Found at i:128653 original size:11 final size:10
Alignment explanation
Indices: 128623--128681 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
128613 TTTACATTAT
*
128623 ATTTTTATTG
1 ATTTTTATTC
*
128633 AATTTTATTC
1 ATTTTTATTC
128643 ATTTTTAATTC
1 ATTTTT-ATTC
*
128654 ATTTCTATTGC
1 ATTTTTATT-C
*
128665 ATTTTTATTT
1 ATTTTTATTC
128675 ATTTTTA
1 ATTTTTA
128682 AAAAATGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
10 23 0.56
11 18 0.44
ACGTcount: A:0.24, C:0.07, G:0.03, T:0.66
Consensus pattern (10 bp):
ATTTTTATTC
Found at i:128678 original size:21 final size:19
Alignment explanation
Indices: 128623--128679 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
128613 TTTACATTAT
128623 ATTTTTATTGAATTTTATTC
1 ATTTTTATT-AATTTTATTC
*
128643 ATTTTTAATTCATTTCTATTGC
1 ATTTTT-ATTAATTT-TATT-C
*
128665 ATTTTTATTTATTTT
1 ATTTTTATTAATTTT
128680 TAAAAAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 11 0.34
21 14 0.44
22 7 0.22
ACGTcount: A:0.23, C:0.07, G:0.04, T:0.67
Consensus pattern (19 bp):
ATTTTTATTAATTTTATTC
Found at i:140317 original size:19 final size:19
Alignment explanation
Indices: 140293--140331 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
140283 ATCAACTCTA
140293 GAAA-TTTGCAAGAAAAGAT
1 GAAATTTTG-AAGAAAAGAT
*
140312 GAAATTTTGAAGAATAGAT
1 GAAATTTTGAAGAAAAGAT
140331 G
1 G
140332 CATATGTCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.49, C:0.03, G:0.23, T:0.26
Consensus pattern (19 bp):
GAAATTTTGAAGAAAAGAT
Found at i:141916 original size:11 final size:11
Alignment explanation
Indices: 141900--141927 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
141890 CGAACGGACA
141900 AGAGAGGATAG
1 AGAGAGGATAG
141911 AGAGAGGATAG
1 AGAGAGGATAG
141922 AGAGAG
1 AGAGAG
141928 AAACAGAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.46, T:0.07
Consensus pattern (11 bp):
AGAGAGGATAG
Found at i:147360 original size:21 final size:21
Alignment explanation
Indices: 147336--147375 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
147326 AAGACTCTAT
147336 TTTCAAAATACAAAAATGATA
1 TTTCAAAATACAAAAATGATA
**
147357 TTTCAAAATTGAAAAATGA
1 TTTCAAAATACAAAAATGA
147376 AAACAGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.30
Consensus pattern (21 bp):
TTTCAAAATACAAAAATGATA
Found at i:151201 original size:24 final size:23
Alignment explanation
Indices: 151159--151262 Score: 112
Period size: 21 Copynumber: 4.7 Consensus size: 23
151149 TTGTGCATAA
151159 TGCATCGAT--ACACTATGAAGG
1 TGCATCGATGCACACTATGAAGG
*
151180 TGCATCGATGCATCACTATGAATG
1 TGCATCGATGCA-CACTATGAAGG
*
151204 TGCATCGAT--ACA-TCATGAAGA
1 TGCATCGATGCACACT-ATGAAGG
* *
151225 TGCATCGATGCACTCT-TGAATG
1 TGCATCGATGCACACTATGAAGG
151247 TGCATCGATGCACACT
1 TGCATCGATGCACACT
151263 GTCGTGCATC
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
20 1 0.01
21 25 0.36
22 20 0.29
23 3 0.04
24 20 0.29
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
TGCATCGATGCACACTATGAAGG
Found at i:151223 original size:45 final size:43
Alignment explanation
Indices: 151159--151255 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 43
151149 TTGTGCATAA
*
151159 TGCATCGATACACTATGAAGGTGCATCGATGCATCACTATGAATG
1 TGCATCGATACACTATGAAGATGCATCGATGCA-CACT-TGAATG
*
151204 TGCATCGATACA-TCATGAAGATGCATCGATGCACTCTTGAATG
1 TGCATCGATACACT-ATGAAGATGCATCGATGCACACTTGAATG
151247 TGCATCGAT
1 TGCATCGAT
151256 GCACACTGTC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
43 15 0.31
44 4 0.08
45 30 0.61
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (43 bp):
TGCATCGATACACTATGAAGATGCATCGATGCACACTTGAATG
Found at i:153247 original size:13 final size:14
Alignment explanation
Indices: 153201--153248 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
153191 TTTGATGTTA
*
153201 TTGGATTATTCTATT
1 TTGGA-TATTATATT
153216 TTGGATGATTATATGT
1 TTGGAT-ATTATAT-T
153232 TTGGAT-TTATATT
1 TTGGATATTATATT
153245 TTGG
1 TTGG
153249 TTTGTTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.17
14 7 0.23
15 11 0.37
16 7 0.23
ACGTcount: A:0.21, C:0.02, G:0.21, T:0.56
Consensus pattern (14 bp):
TTGGATATTATATT
Found at i:154895 original size:22 final size:22
Alignment explanation
Indices: 154870--154913 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
154860 TAATATTATA
154870 AAGTA-ACCTTTTGTATATATTT
1 AAGTATACCTTTT-TATATATTT
* *
154892 AAGTATGCCTTTTTATTTATTT
1 AAGTATACCTTTTTATATATTT
154914 TGTACTAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.55
Consensus pattern (22 bp):
AAGTATACCTTTTTATATATTT
Found at i:155968 original size:45 final size:45
Alignment explanation
Indices: 155916--156144 Score: 257
Period size: 45 Copynumber: 5.1 Consensus size: 45
155906 AATACATCAT
*
155916 TATGCATTTTAAACTCTAACAT-CTTTTCTGTTGATAATGCACCCA
1 TATGCA-TTTCAACTCTAACATACTTTTCTGTTGATAATGCACCCA
* * ** * * *
155961 TATGCATTTCAATTATATTATACTTTTATGCTGATAATGTACCCA
1 TATGCATTTCAACTCTAACATACTTTTCTGTTGATAATGCACCCA
* ** *
156006 TATACATTTCAAC-CATATTATACTTTTCTGTTGATAATGTACCCA
1 TATGCATTTCAACTC-TAACATACTTTTCTGTTGATAATGCACCCA
* * * *
156051 TATACATTTCAACTCTAGCATACTTTTATGTTGATAAAGCACCCA
1 TATGCATTTCAACTCTAACATACTTTTCTGTTGATAATGCACCCA
*
156096 TATGCATTTCAACTCT-ACTATATTTTTCTGTTGATAATGCACCCA
1 TATGCATTTCAACTCTAAC-ATACTTTTCTGTTGATAATGCACCCA
156141 TATG
1 TATG
156145 TATTATGTTA
Statistics
Matches: 157, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
44 11 0.07
45 145 0.92
46 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (45 bp):
TATGCATTTCAACTCTAACATACTTTTCTGTTGATAATGCACCCA
Found at i:156059 original size:90 final size:90
Alignment explanation
Indices: 155938--156143 Score: 288
Period size: 90 Copynumber: 2.3 Consensus size: 90
155928 ACTCTAACAT
* * ** * *
155938 CTTTTCTGTTGATAATGCACCCATATGCATTTCAATTATATTATACTTTTATGCTGATAATGTAC
1 CTTTTCTGTTGATAATGCACCCATATACATTTCAACTATAGCATACTTTTATGCTGATAAAGCAC
*
156003 CCATATACATTTCAAC-CATATTATA
66 CCATATACATTTCAACTC-TACTATA
* * *
156028 CTTTTCTGTTGATAATGTACCCATATACATTTCAACTCTAGCATACTTTTATGTTGATAAAGCAC
1 CTTTTCTGTTGATAATGCACCCATATACATTTCAACTATAGCATACTTTTATGCTGATAAAGCAC
*
156093 CCATATGCATTTCAACTCTACTATA
66 CCATATACATTTCAACTCTACTATA
*
156118 TTTTTCTGTTGATAATGCACCCATAT
1 CTTTTCTGTTGATAATGCACCCATAT
156144 GTATTATGTT
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
90 101 0.99
91 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (90 bp):
CTTTTCTGTTGATAATGCACCCATATACATTTCAACTATAGCATACTTTTATGCTGATAAAGCAC
CCATATACATTTCAACTCTACTATA
Found at i:156257 original size:78 final size:78
Alignment explanation
Indices: 156130--156312 Score: 291
Period size: 78 Copynumber: 2.4 Consensus size: 78
156120 TTTCTGTTGA
* *
156130 TAATGCACCCATATGTATTA--TGTTATGCTGATAATATACCCATATACATATCAGCTAAGGCAT
1 TAATGCACCCATATGCATTATTTTTTATGCTGATAATATACCCATATACATATCAGCTAAGGCAT
156193 CCTTTCATGCCAC
66 CCTTTCATGCCAC
*
156206 TAATGCACCCATATGCATTATTTTTTATG-TCGATAATGTACCCATATACATATCAGCTAAGGCA
1 TAATGCACCCATATGCATTATTTTTTATGCT-GATAATATACCCATATACATATCAGCTAAGGCA
*
156270 TCTTTTCATGCCAC
65 TCCTTTCATGCCAC
156284 TAATGCACCCATATGCATTATTCTTTTAT
1 TAATGCACCCATATGCATTATT-TTTTAT
156313 TCATTAGTAT
Statistics
Matches: 99, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
76 19 0.19
77 1 0.01
78 73 0.74
79 6 0.06
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (78 bp):
TAATGCACCCATATGCATTATTTTTTATGCTGATAATATACCCATATACATATCAGCTAAGGCAT
CCTTTCATGCCAC
Found at i:156677 original size:20 final size:20
Alignment explanation
Indices: 156652--156805 Score: 227
Period size: 20 Copynumber: 7.7 Consensus size: 20
156642 TTTATCTAAT
156652 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
** *
156672 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
156693 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
156713 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
156733 TCGCAATGTGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
156753 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
156773 TCGCAATGTGAATATGTAAA
1 TCGCAATGCGAATACGTAAA
*
156793 TCGCAACGCGAAT
1 TCGCAATGCGAAT
156806 CTGACTATCG
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
20 103 0.87
21 16 0.13
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:156815 original size:20 final size:20
Alignment explanation
Indices: 156792--156838 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
156782 GAATATGTAA
*
156792 ATCGCAACGCGAATCTGACT
1 ATCGCAACGAGAATCTGACT
*
156812 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGAATCTGACT
156832 ATCGCAA
1 ATCGCAA
156839 TACTAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (20 bp):
ATCGCAACGAGAATCTGACT
Found at i:157707 original size:24 final size:24
Alignment explanation
Indices: 157680--157733 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
157670 GTATTCGAAA
157680 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
157704 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
157728 TTTGAT
1 TTTGAT
157734 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:160192 original size:20 final size:20
Alignment explanation
Indices: 160169--160243 Score: 132
Period size: 20 Copynumber: 3.8 Consensus size: 20
160159 CAATGCGAAT
*
160169 ATGACTATCGCAACACGGAA
1 ATGACTATCGCAACGCGGAA
160189 ATGACTATCGCAACGCGGAA
1 ATGACTATCGCAACGCGGAA
*
160209 TTGACTATCGCAACGCGGAA
1 ATGACTATCGCAACGCGGAA
160229 ATGACTATCGCAACG
1 ATGACTATCGCAACG
160244 AGAGAATCGC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (20 bp):
ATGACTATCGCAACGCGGAA
Found at i:160214 original size:40 final size:40
Alignment explanation
Indices: 160157--160243 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
160147 ACGTGGAAAC
*
160157 CGCAATGCGAATATGACTATCGCAACACGGAAATGACTAT
1 CGCAACGCGAATATGACTATCGCAACACGGAAATGACTAT
*
160197 CGCAACGCGGAAT-TGACTATCGCAACGCGGAAATGACTAT
1 CGCAACGC-GAATATGACTATCGCAACACGGAAATGACTAT
160237 CGCAACG
1 CGCAACG
160244 AGAGAATCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 40 0.91
41 4 0.09
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.17
Consensus pattern (40 bp):
CGCAACGCGAATATGACTATCGCAACACGGAAATGACTAT
Found at i:160265 original size:34 final size:34
Alignment explanation
Indices: 160215--160311 Score: 140
Period size: 34 Copynumber: 2.9 Consensus size: 34
160205 GGAATTGACT
* * **
160215 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
*
160249 ATCGCAATGCGAAAATGAAAATCGCAACGAGTGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
*
160283 ATCACAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCGAAAATGAAAATCGCAACG
160312 CGAAATTAGT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.13
Consensus pattern (34 bp):
ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
Found at i:160273 original size:20 final size:20
Alignment explanation
Indices: 160248--160316 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 20
160238 GCAACGAGAG
160248 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCGAAAATGAA
*
160268 AATCGCAA--CG--AGTG--
1 AATCGCAATGCGAAAATGAA
*
160282 AATCACAATGCGAAAATGAA
1 AATCGCAATGCGAAAATGAA
*
160302 AATCGCAACGCGAAA
1 AATCGCAATGCGAAA
160317 TTAGTTTCGT
Statistics
Matches: 38, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
14 7 0.18
16 5 0.13
18 5 0.13
20 21 0.55
ACGTcount: A:0.48, C:0.19, G:0.20, T:0.13
Consensus pattern (20 bp):
AATCGCAATGCGAAAATGAA
Found at i:160383 original size:33 final size:33
Alignment explanation
Indices: 160327--160410 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
160317 TTAGTTTCGT
*
160327 GTTGCGATTTTCATTTTCGCATTGTGATTCACTC
1 GTTGCGATTTTCA-TTTCGCATTGCGATTCACTC
*
160361 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTCACTC
* **
160394 TTTGCGATAGTCATTTC
1 GTTGCGATTTTCATTTC
160411 CGTGTTGCGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 32 0.71
34 13 0.29
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.46
Consensus pattern (33 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCACTC
Found at i:160546 original size:14 final size:14
Alignment explanation
Indices: 160527--160563 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
160517 CATCAATTAA
160527 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
160541 ACAAATCATCTTTT
1 ACAAATCAACATTT
160555 ACAAATCAA
1 ACAAATCAA
160564 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:162017 original size:21 final size:21
Alignment explanation
Indices: 161941--162022 Score: 83
Period size: 21 Copynumber: 3.9 Consensus size: 21
161931 TTGGGAAGGA
* *
161941 CCTCTTCAACGATGACAGTGG
1 CCTCTTGAACGATGACAGGGG
* **
161962 CCTCTTGAACGGTGGGAGGGG
1 CCTCTTGAACGATGACAGGGG
* ** *
161983 ACTCTTGAGGGATGATAGGGG
1 CCTCTTGAACGATGACAGGGG
162004 CCTCTTGAACGATGACAGG
1 CCTCTTGAACGATGACAGG
162023 TGAGTCGGGC
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (21 bp):
CCTCTTGAACGATGACAGGGG
Found at i:162522 original size:20 final size:20
Alignment explanation
Indices: 162472--162583 Score: 139
Period size: 20 Copynumber: 6.0 Consensus size: 20
162462 GTTTCAATTT
162472 GTCA-TTTCGCATTGCGAT-
1 GTCATTTTCGCATTGCGATA
162490 -TC--TTTCG--TTGCGATA
1 GTCATTTTCGCATTGCGATA
**
162505 GTCAAATTCGCATTGCGATA
1 GTCATTTTCGCATTGCGATA
*
162525 GTCATTTTCGCATTGCAATA
1 GTCATTTTCGCATTGCGATA
162545 GTCATTTTCGCATTGCGATA
1 GTCATTTTCGCATTGCGATA
*
162565 GTCATTTTCGCGTTGCGAT
1 GTCATTTTCGCATTGCGAT
162584 TTTGTTGTTG
Statistics
Matches: 82, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
14 7 0.09
16 7 0.09
17 2 0.02
18 4 0.05
20 62 0.76
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (20 bp):
GTCATTTTCGCATTGCGATA
Found at i:164537 original size:20 final size:21
Alignment explanation
Indices: 164514--164601 Score: 96
Period size: 20 Copynumber: 4.4 Consensus size: 21
164504 TGAAACTTAA
164514 AATCGCAACACGAAAATGA-T
1 AATCGCAACACGAAAATGACT
164534 AATCGCAACACGAAAATGACT
1 AATCGCAACACGAAAATGACT
* **
164555 -ATCGCAACGCGAATTTGACT
1 AATCGCAACACGAAAATGACT
* *
164575 -ATCGCAACGCG-AAATGA-A
1 AATCGCAACACGAAAATGACT
164593 AATCGCAAC
1 AATCGCAAC
164602 GACAGAATCG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
19 12 0.20
20 47 0.78
21 1 0.02
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.16
Consensus pattern (21 bp):
AATCGCAACACGAAAATGACT
Found at i:164990 original size:22 final size:22
Alignment explanation
Indices: 164928--164993 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
164918 TGACCGTGAA
*
164928 TGATTTCGTCGGAGATGGAGAC
1 TGATTTCGTCGGAGATGGGGAC
*
164950 TGATATCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
*
164972 TGATTTCATCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
164994 GGATGTCGCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.23, C:0.14, G:0.38, T:0.26
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Done.