Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007909.1 Hibiscus syriacus cultivar Beakdansim tig00110303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3382237
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 15 of 17
Found at i:2721009 original size:19 final size:19
Alignment explanation
Indices: 2720985--2721074 Score: 101
Period size: 19 Copynumber: 4.6 Consensus size: 19
2720975 AACTAAAACT
*
2720985 TGTTGCGAAATTAAATTCG
1 TGTTGCGAATTTAAATTCG
*
2721004 TGTTGCGAATTTGAAAATCG
1 TGTTGCGAATTT-AAATTCG
*
2721024 AGTTGCGAATTTTAAATTC-
1 TGTTGCGAA-TTTAAATTCG
*
2721043 AGTTGCGAATTTGAAATTCAG
1 TGTTGCGAATTT-AAATTC-G
2721064 TGTTGCGAATT
1 TGTTGCGAATT
2721075 GGCAAACGCG
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
18 3 0.05
19 26 0.43
20 19 0.31
21 13 0.21
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (19 bp):
TGTTGCGAATTTAAATTCG
Found at i:2721048 original size:39 final size:41
Alignment explanation
Indices: 2720986--2721074 Score: 121
Period size: 39 Copynumber: 2.2 Consensus size: 41
2720976 ACTAAAACTT
* *
2720986 GTTGCGAA-ATTAAATTCGTGTTGCGAATTTGAAAATC-GA
1 GTTGCGAATTTTAAATTCGAGTTGCGAATTTGAAAATCAGA
* *
2721025 GTTGCGAATTTTAAATTC-AGTTGCGAATTTGAAATTCAGT
1 GTTGCGAATTTTAAATTCGAGTTGCGAATTTGAAAATCAGA
2721065 GTTGCGAATT
1 GTTGCGAATT
2721075 GGCAAACGCG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 25 0.57
40 19 0.43
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.37
Consensus pattern (41 bp):
GTTGCGAATTTTAAATTCGAGTTGCGAATTTGAAAATCAGA
Found at i:2721088 original size:40 final size:39
Alignment explanation
Indices: 2721005--2721096 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 39
2720995 TTAAATTCGT
** **
2721005 GTTGCGAATTTGAAAATCGAGTTGCGAATTTTAAATTCA
1 GTTGCGAATTTGAAAATCGAGTTGCGAATTGCAAACGCA
* *
2721044 GTTGCGAATTTGAAATTCAGTGTTGCGAATTGGCAAACGC-
1 GTTGCGAATTTGAAAATC-GAGTTGCGAATT-GCAAACGCA
2721084 GTTGCGAATTTGA
1 GTTGCGAATTTGA
2721097 CTTCTTTGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
39 17 0.38
40 24 0.53
41 4 0.09
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (39 bp):
GTTGCGAATTTGAAAATCGAGTTGCGAATTGCAAACGCA
Found at i:2721108 original size:60 final size:59
Alignment explanation
Indices: 2720983--2721140 Score: 160
Period size: 60 Copynumber: 2.6 Consensus size: 59
2720973 GAAACTAAAA
* *
2720983 CTTGTTGCGAAATTAAATTCGTGTTGCGAATTTGAAAATCGAGTTGCGAATTTTAAATT
1 CTTGTTGCGAATTTAAATTCGTGTTGCGAATTGGAAAATCGAGTTGCGAATTTTAAATT
* * * * *
2721042 C-AGTTGCGAATTTGAAATTCAGTGTTGCGAATTGGCAAA-CGCGTTGCGAA-TTTGACTT
1 CTTGTTGCGAATTT-AAATTC-GTGTTGCGAATTGGAAAATCGAGTTGCGAATTTTAAATT
* *
2721100 CTTTGTTGCGATTTTCTAAATTCGCGTTGCGAATTTGGAAA
1 C-TTGTTGCGA-ATT-TAAATTCGTGTTGCGAA-TTGGAAA
2721141 CTTGGTTGCT
Statistics
Matches: 81, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
58 17 0.21
59 17 0.21
60 32 0.40
61 14 0.17
62 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (59 bp):
CTTGTTGCGAATTTAAATTCGTGTTGCGAATTGGAAAATCGAGTTGCGAATTTTAAATT
Found at i:2724279 original size:97 final size:97
Alignment explanation
Indices: 2724164--2724357 Score: 379
Period size: 97 Copynumber: 2.0 Consensus size: 97
2724154 TTGAGCATGG
2724164 TATCGTTATTTGAGGAAAATAATATCTTTTGTGATAGTTTATATTATGCGTACACTCTAATAGGT
1 TATCGTTATTTGAGGAAAATAATATCTTTTGTGATAGTTTATATTATGCGTACACTCTAATAGGT
*
2724229 ATTAGTGAGATAATGGTGTGGAGCAAGAACAA
66 ATTAGTGAGATAATGGCGTGGAGCAAGAACAA
2724261 TATCGTTATTTGAGGAAAATAATATCTTTTGTGATAGTTTATATTATGCGTACACTCTAATAGGT
1 TATCGTTATTTGAGGAAAATAATATCTTTTGTGATAGTTTATATTATGCGTACACTCTAATAGGT
2724326 ATTAGTGAGATAATGGCGTGGAGCAAGAACAA
66 ATTAGTGAGATAATGGCGTGGAGCAAGAACAA
2724358 AGAATAATAC
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 96 1.00
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.36
Consensus pattern (97 bp):
TATCGTTATTTGAGGAAAATAATATCTTTTGTGATAGTTTATATTATGCGTACACTCTAATAGGT
ATTAGTGAGATAATGGCGTGGAGCAAGAACAA
Found at i:2726715 original size:28 final size:26
Alignment explanation
Indices: 2726665--2726724 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
2726655 AAAGTAGCAT
2726665 CATTTTCAAAACAATTACCAAAATATC
1 CATTTTCAAAACAATTACCAAAATA-C
* * **
2726692 ACATTTTGAAAATAATTATTAAAATAC
1 -CATTTTCAAAACAATTACCAAAATAC
2726719 CATTTT
1 CATTTT
2726725 TTAAAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 1 0.04
28 21 0.75
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.37
Consensus pattern (26 bp):
CATTTTCAAAACAATTACCAAAATAC
Found at i:2726735 original size:27 final size:27
Alignment explanation
Indices: 2726695--2726760 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
2726685 AAATATCACA
* * *
2726695 TTTTGAAAATAATTATTAAAATACCAT
1 TTTTTAAAAAAATTATGAAAATACCAT
* * *
2726722 TTTTTAAAAAAATTATGAAATTATCTT
1 TTTTTAAAAAAATTATGAAAATACCAT
2726749 TTTTTAAAAAAA
1 TTTTTAAAAAAA
2726761 AAATTACAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (27 bp):
TTTTTAAAAAAATTATGAAAATACCAT
Found at i:2726789 original size:29 final size:29
Alignment explanation
Indices: 2726757--2726838 Score: 119
Period size: 29 Copynumber: 2.8 Consensus size: 29
2726747 TTTTTTTAAA
*
2726757 AAAAAAATTACAAGAATAGCACCCTTTTC
1 AAAATAATTACAAGAATAGCACCCTTTTC
* *
2726786 AAAATAATTACCAGAATAGCGCCCTTTTC
1 AAAATAATTACAAGAATAGCACCCTTTTC
* *
2726815 CAAATAATTACTAGAATAGCACCC
1 AAAATAATTACAAGAATAGCACCC
2726839 GGTCAACGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.24
Consensus pattern (29 bp):
AAAATAATTACAAGAATAGCACCCTTTTC
Found at i:2732740 original size:18 final size:19
Alignment explanation
Indices: 2732703--2732747 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
2732693 TATTTGAGTC
* *
2732703 AATTTAAATTCATATTTAA
1 AATTTTAATTAATATTTAA
2732722 AATTTTAATTAAT-TTTAA
1 AATTTTAATTAATATTTAA
*
2732740 ATTTTTAA
1 AATTTTAA
2732748 ACTTTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
AATTTTAATTAATATTTAA
Found at i:2735871 original size:29 final size:29
Alignment explanation
Indices: 2735838--2735920 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
2735828 AGGTCGCCCT
* *
2735838 AGGTCGCCATGCACTCCGGGCGACCAAGG
1 AGGTCGCCATGCACGCCCGGCGACCAAGG
2735867 AGGTCGCCATGCACGCCCGGCGACCAAGG
1 AGGTCGCCATGCACGCCCGGCGACCAAGG
*
2735896 AGGTCGCCATGCACGCCCCGCGACC
1 AGGTCGCCATGCACGCCCGGCGACC
2735921 TTGTCTCCTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.19, C:0.40, G:0.33, T:0.08
Consensus pattern (29 bp):
AGGTCGCCATGCACGCCCGGCGACCAAGG
Found at i:2735871 original size:39 final size:39
Alignment explanation
Indices: 2735798--2735874 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 39
2735788 ACCCAACCCA
** *
2735798 TAGGTCGCCATGCACTCCCAGCGACCTCCTAGGTCGCCC
1 TAGGTCGCCATGCACTCCCAGCGACCAACGAGGTCGCCC
** *
2735837 TAGGTCGCCATGCACTCCGGGCGACCAAGGAGGTCGCC
1 TAGGTCGCCATGCACTCCCAGCGACCAACGAGGTCGCC
2735875 ATGCACGCCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.17, C:0.39, G:0.29, T:0.16
Consensus pattern (39 bp):
TAGGTCGCCATGCACTCCCAGCGACCAACGAGGTCGCCC
Found at i:2737154 original size:21 final size:22
Alignment explanation
Indices: 2737120--2737163 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
2737110 TGGAGATAAG
2737120 ATTATTTATTTTTAAACATTAA
1 ATTATTTATTTTTAAACATTAA
**
2737142 ATTATTT-TTTTTATCCATTAA
1 ATTATTTATTTTTAAACATTAA
2737163 A
1 A
2737164 AAGTTCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTATTTATTTTTAAACATTAA
Found at i:2741039 original size:29 final size:30
Alignment explanation
Indices: 2740996--2741056 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 30
2740986 TCCACATTCG
2740996 AAAATTACCAAAATGTCACATTTTTCAAAA
1 AAAATTACCAAAATGTCACATTTTTCAAAA
* *
2741026 AAAATT-CCAGAATGTCACATTTTTCACAA
1 AAAATTACCAAAATGTCACATTTTTCAAAA
2741055 AA
1 AA
2741057 TGTCACCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 23 0.79
30 6 0.21
ACGTcount: A:0.48, C:0.18, G:0.05, T:0.30
Consensus pattern (30 bp):
AAAATTACCAAAATGTCACATTTTTCAAAA
Found at i:2741074 original size:17 final size:18
Alignment explanation
Indices: 2741036--2741074 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
2741026 AAAATTCCAG
2741036 AATGTCACATTTTTCACAA
1 AATGTCACATTTTT-ACAA
*
2741055 AATGTCACCTTTTT-CAA
1 AATGTCACATTTTTACAA
2741072 AAT
1 AAT
2741075 AATTCCCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
19 13 0.68
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (18 bp):
AATGTCACATTTTTACAA
Found at i:2741126 original size:17 final size:18
Alignment explanation
Indices: 2741087--2741137 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 18
2741077 TTCCCAGAAT
*
2741087 GTCACCGGGTCGAGTCGG
1 GTCAACGGGTCGAGTCGG
*
2741105 GTCAACGGGTCGGGTC-G
1 GTCAACGGGTCGAGTCGG
*
2741122 GTCAATGGGTCGAGTC
1 GTCAACGGGTCGAGTC
2741138 AGACCGGTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 15 0.52
18 14 0.48
ACGTcount: A:0.14, C:0.24, G:0.43, T:0.20
Consensus pattern (18 bp):
GTCAACGGGTCGAGTCGG
Found at i:2741163 original size:19 final size:19
Alignment explanation
Indices: 2741136--2741183 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
2741126 ATGGGTCGAG
2741136 TCAGACCGGTCA-ACCCGGT
1 TCAGACCGGTCAGA-CCGGT
*
2741155 TCGGACCGGTCAGACCGGT
1 TCAGACCGGTCAGACCGGT
2741174 TCAGACCGGT
1 TCAGACCGGT
2741184 TTGGACCGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 25 0.96
20 1 0.04
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (19 bp):
TCAGACCGGTCAGACCGGT
Found at i:2741170 original size:9 final size:9
Alignment explanation
Indices: 2741135--2741183 Score: 55
Period size: 9 Copynumber: 5.2 Consensus size: 9
2741125 AATGGGTCGA
2741135 GTCAGACCG
1 GTCAGACCG
2741144 GTCA-ACCCG
1 GTCAGA-CCG
*
2741153 GTTCGGACCG
1 G-TCAGACCG
2741163 GTCAGACCG
1 GTCAGACCG
2741172 GTTCAGACCG
1 G-TCAGACCG
2741182 GT
1 GT
2741184 TTGGACCGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 1 0.03
9 17 0.50
10 15 0.44
11 1 0.03
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (9 bp):
GTCAGACCG
Found at i:2741190 original size:29 final size:28
Alignment explanation
Indices: 2741135--2741206 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 28
2741125 AATGGGTCGA
2741135 GTCAGACCGGTCAACCCGGTTCGGACCG
1 GTCAGACCGGTCAACCCGGTTCGGACCG
*
2741163 GTCAGACCGGTTCAGA-CCGGTTTGGACCG
1 GTCAGACCGG-TCA-ACCCGGTTCGGACCG
*
2741192 GTCA-AGCGGTCAACC
1 GTCAGACCGGTCAACC
2741207 AATTAAACTA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
26 1 0.03
27 4 0.10
28 14 0.36
29 19 0.49
30 1 0.03
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (28 bp):
GTCAGACCGGTCAACCCGGTTCGGACCG
Found at i:2741193 original size:10 final size:10
Alignment explanation
Indices: 2741136--2741184 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
2741126 ATGGGTCGAG
2741136 TCAGACCGG-
1 TCAGACCGGT
2741145 TCA-ACCCGGT
1 TCAGA-CCGGT
*
2741155 TCGGACCGG-
1 TCAGACCGGT
2741164 TCAGACCGGT
1 TCAGACCGGT
2741174 TCAGACCGGT
1 TCAGACCGGT
2741184 T
1 T
2741185 TGGACCGGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
8 1 0.03
9 15 0.44
10 17 0.50
11 1 0.03
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (10 bp):
TCAGACCGGT
Found at i:2751138 original size:21 final size:21
Alignment explanation
Indices: 2751114--2751161 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
2751104 AATCAACATT
*
2751114 ATAATAAAACGGTTGATGAGA
1 ATAAGAAAACGGTTGATGAGA
***
2751135 ATAAGGGTACGGTTGATGAGA
1 ATAAGAAAACGGTTGATGAGA
2751156 ATAAGA
1 ATAAGA
2751162 GTGTGTTTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.04, G:0.29, T:0.23
Consensus pattern (21 bp):
ATAAGAAAACGGTTGATGAGA
Found at i:2755193 original size:40 final size:41
Alignment explanation
Indices: 2755130--2755206 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 41
2755120 GACAATGGAA
*
2755130 AAAAATACAGATCCAGTAAATCCTACTCAAAG-AAAAGTAC
1 AAAAATACAGATCCAATAAATCCTACTCAAAGCAAAAGTAC
* *
2755170 AAAAATATAGATCCAATAGATCCTACTCAAAGCAAAA
1 AAAAATACAGATCCAATAAATCCTACTCAAAGCAAAA
2755207 CTGACAAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 29 0.88
41 4 0.12
ACGTcount: A:0.53, C:0.19, G:0.09, T:0.18
Consensus pattern (41 bp):
AAAAATACAGATCCAATAAATCCTACTCAAAGCAAAAGTAC
Found at i:2755569 original size:2 final size:2
Alignment explanation
Indices: 2755562--2755627 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
2755552 TTTATACAGA
2755562 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2755604 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
2755628 GATGGTGAAG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2759297 original size:2 final size:2
Alignment explanation
Indices: 2759290--2759318 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2759280 AGCGAAAATG
2759290 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2759319 GTTTAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2759460 original size:12 final size:13
Alignment explanation
Indices: 2759433--2759465 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
2759423 TAATATATCC
*
2759433 TTTAAAATTCTAT
1 TTTAAAAATCTAT
2759446 TTTAAAAAT-TAT
1 TTTAAAAATCTAT
2759458 TTTAAAAA
1 TTTAAAAA
2759466 AATAATAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTAAAAATCTAT
Found at i:2765007 original size:39 final size:39
Alignment explanation
Indices: 2764927--2765008 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 39
2764917 AACAAGTTGG
* *
2764927 AAAATATTTATATATTTTCTTTAAAAAATTTAAATTCAT
1 AAAATATTTATATATTTTCTTTAAAAAATTGAAAATCAT
* *
2764966 AAAAT-TTATATATATTTTTTTTTACAAAATTGAAAAT-AT
1 AAAATATT-TATATA-TTTTCTTTAAAAAATTGAAAATCAT
2765005 AAAA
1 AAAA
2765009 AGGTTTAATG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.05
39 17 0.46
40 18 0.49
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (39 bp):
AAAATATTTATATATTTTCTTTAAAAAATTGAAAATCAT
Found at i:2767531 original size:20 final size:20
Alignment explanation
Indices: 2767484--2767532 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
2767474 CCAGCTCCCC
2767484 ACAGCAGCACCAAATCCGCG
1 ACAGCAGCACCAAATCCGCG
*
2767504 ACAACAGCACCAAATCCGCG
1 ACAGCAGCACCAAATCCGCG
*
2767524 GCAGCAGCA
1 ACAGCAGCA
2767533 GCCCTAGCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.39, G:0.20, T:0.04
Consensus pattern (20 bp):
ACAGCAGCACCAAATCCGCG
Found at i:2772703 original size:38 final size:40
Alignment explanation
Indices: 2772650--2772739 Score: 103
Period size: 38 Copynumber: 2.3 Consensus size: 40
2772640 TGGACACAAA
* ** *
2772650 CTAAAATTGTTACCTTCTTCGTAATATCTTCTGTTGA-A-C
1 CTAAAA-TATTACCTTCTTAATAATATCTTCGGTTGACAGC
*
2772689 CTAAAATATTACCTTCTTAATAATATTTTCGGTTGACAGC
1 CTAAAATATTACCTTCTTAATAATATCTTCGGTTGACAGC
*
2772729 CAAAAATATTA
1 CTAAAATATTA
2772740 TTTTATTTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
38 25 0.58
39 7 0.16
40 11 0.26
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (40 bp):
CTAAAATATTACCTTCTTAATAATATCTTCGGTTGACAGC
Found at i:2773189 original size:133 final size:133
Alignment explanation
Indices: 2773003--2773265 Score: 526
Period size: 133 Copynumber: 2.0 Consensus size: 133
2772993 ATTATACTAT
2773003 TAATCATTGAAAAGCTTATGAAGATGCATATAATTCAATTTTATACTATTATAAATTGATTCCTT
1 TAATCATTGAAAAGCTTATGAAGATGCATATAATTCAATTTTATACTATTATAAATTGATTCCTT
2773068 TCATGTATATACATTCACATAAAACACACGTGCTCATGTTTCCAAGTACTAAAATAAGAAATAAG
66 TCATGTATATACATTCACATAAAACACACGTGCTCATGTTTCCAAGTACTAAAATAAGAAATAAG
2773133 AAA
131 AAA
2773136 TAATCATTGAAAAGCTTATGAAGATGCATATAATTCAATTTTATACTATTATAAATTGATTCCTT
1 TAATCATTGAAAAGCTTATGAAGATGCATATAATTCAATTTTATACTATTATAAATTGATTCCTT
2773201 TCATGTATATACATTCACATAAAACACACGTGCTCATGTTTCCAAGTACTAAAATAAGAAATAAG
66 TCATGTATATACATTCACATAAAACACACGTGCTCATGTTTCCAAGTACTAAAATAAGAAATAAG
2773266 CTAGATTCTA
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 130 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.34
Consensus pattern (133 bp):
TAATCATTGAAAAGCTTATGAAGATGCATATAATTCAATTTTATACTATTATAAATTGATTCCTT
TCATGTATATACATTCACATAAAACACACGTGCTCATGTTTCCAAGTACTAAAATAAGAAATAAG
AAA
Found at i:2775150 original size:112 final size:112
Alignment explanation
Indices: 2774953--2775182 Score: 451
Period size: 112 Copynumber: 2.1 Consensus size: 112
2774943 TGAAAATTAA
2774953 AAGCTACAAAATAGTCCTCCGACTATAGAAAATTATTTTGTTGAGTCTCTCGGCTATTCATATAT
1 AAGCTACAAAATAGTCCTCCGACTATAGAAAATTATTTTGTTGAGTCTCTCGGCTATTCATATAT
2775018 TTCAAACTCATCATTTTCAGTTAAAAAATTGACGGTGTCTGAGTTGG
66 TTCAAACTCATCATTTTCAGTTAAAAAATTGACGGTGTCTGAGTTGG
2775065 AAGCTACAAAATAGTCCTCCGACTATAGAAAATTATTTTGTTGAGTCTCTCGGCTATTCATATAT
1 AAGCTACAAAATAGTCCTCCGACTATAGAAAATTATTTTGTTGAGTCTCTCGGCTATTCATATAT
2775130 TTCAAACTCATCATTTTCAGTTAAAAAATTGACGGTGTCTGAGTTGG
66 TTCAAACTCATCATTTTCAGTTAAAAAATTGACGGTGTCTGAGTTGG
*
2775177 ACGCTA
1 AAGCTA
2775183 ACTTTTTGAC
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
112 117 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.35
Consensus pattern (112 bp):
AAGCTACAAAATAGTCCTCCGACTATAGAAAATTATTTTGTTGAGTCTCTCGGCTATTCATATAT
TTCAAACTCATCATTTTCAGTTAAAAAATTGACGGTGTCTGAGTTGG
Found at i:2775428 original size:60 final size:60
Alignment explanation
Indices: 2775356--2775487 Score: 192
Period size: 60 Copynumber: 2.2 Consensus size: 60
2775346 TAGTCGGGTC
* ** * *
2775356 ACCATTTCGTAATTTTTAATAGTCAAAAGACTCAACAATGTAGCACCCTATAGTTGAGGG
1 ACCATTTTGTAATTTTTAATAGTCAAAAGACTCAACAATACAACACCCTATAGTCGAGGG
* *
2775416 ACTATTTTGTAATTTTTAATAGTCAAATGACTCAACAATACAACACCCTATAGTCGAGGG
1 ACCATTTTGTAATTTTTAATAGTCAAAAGACTCAACAATACAACACCCTATAGTCGAGGG
2775476 ACCATTTGTGTA
1 ACCATTT-TGTA
2775488 CTTTACCCAA
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
60 59 0.94
61 4 0.06
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (60 bp):
ACCATTTTGTAATTTTTAATAGTCAAAAGACTCAACAATACAACACCCTATAGTCGAGGG
Found at i:2777464 original size:64 final size:65
Alignment explanation
Indices: 2777356--2777545 Score: 203
Period size: 64 Copynumber: 3.0 Consensus size: 65
2777346 TGCATAAATA
*
2777356 CCATGCATCGATGCA-TCAATGGATAAATTGAAACATCGAATGCATTCT-ATGCACCGATGCACT
1 CCATGCATCGATGCACTC-ATGGATAAATTAAAACATCGAATGCATT-TGATGCACCGATGCAC-
*
2777419 C-T
63 CAG
* *
2777421 CCATGCATCGATGCACTC-T-GATTTAATTAAAACATCGAATGCATTTGATGCATCGATGCACCA
1 CCATGCATCGATGCACTCATGGA-TAAATTAAAACATCGAATGCATTTGATGCACCGATGCACCA
2777484 G
65 G
* * ** * * *
2777485 CCATGCATCGATGCACTC-GGGCTATTTTGAAACATCGAATGCACTTGATGCATCGATGCAC
1 CCATGCATCGATGCACTCATGGATAAATTAAAACATCGAATGCATTTGATGCACCGATGCAC
2777546 TCTTAGTGCA
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
63 4 0.04
64 87 0.80
65 16 0.15
66 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (65 bp):
CCATGCATCGATGCACTCATGGATAAATTAAAACATCGAATGCATTTGATGCACCGATGCACCAG
Found at i:2777545 original size:17 final size:19
Alignment explanation
Indices: 2777517--2777565 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
2777507 TATTTTGAAA
2777517 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
2777535 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
2777554 CACCGATGCACT
1 CATCGATGCACT
2777566 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:2777561 original size:64 final size:61
Alignment explanation
Indices: 2777382--2777565 Score: 178
Period size: 64 Copynumber: 2.9 Consensus size: 61
2777372 CAATGGATAA
* * *
2777382 ATTGAAACATCGAATGCATTCTATGCACCGATGCACTCTCCA-TGCATCGATGCACTCTGATTT
1 ATTGAAACATCGAATGCATT-GATGCATCGATGCACTCT--AGTGCATCGATGCACTCGGATTT
* *
2777445 AATTAAAACATCGAATGCATTTGATGCATCGATGCAC-C-AGCCATGCATCGATGCACTCGGGCT
1 -ATTGAAACATCGAATGCA-TTGATGCATCGATGCACTCTAG---TGCATCGATGCACTC-GGAT
2777508 ATT
60 -TT
*
2777511 -TTGAAACATCGAATGCACTTGATGCATCGATGCACTCTTAGTGCACCGATGCACT
1 ATTGAAACATCGAATGCA-TTGATGCATCGATGCACTC-TAGTGCATCGATGCACT
2777566 AAGGGTCCAA
Statistics
Matches: 102, Mismatches: 8, Indels: 20
0.78 0.06 0.15
Matches are distributed among these distances:
60 1 0.01
63 1 0.01
64 91 0.89
65 5 0.05
66 2 0.02
67 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (61 bp):
ATTGAAACATCGAATGCATTGATGCATCGATGCACTCTAGTGCATCGATGCACTCGGATTT
Found at i:2785039 original size:45 final size:44
Alignment explanation
Indices: 2784984--2785090 Score: 144
Period size: 45 Copynumber: 2.4 Consensus size: 44
2784974 TGCACTCTCC
*
2784984 ATGCATCGATGCACTCTGAT-TTAATTAAAACATCGAATGCATTTG
1 ATGCATCGATGCACTCTGATATT--TTAAAACATCGAATGCACTTG
* * *
2785029 ATGCATCGATGCACTCGGGCTATTTTGAAACATCGAATGCACTTG
1 ATGCATCGATGCACTC-TGATATTTTAAAACATCGAATGCACTTG
2785074 ATGCATCGATGCACTCT
1 ATGCATCGATGCACTCT
2785091 TAGTGCACCG
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
45 51 0.93
46 2 0.04
47 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
ATGCATCGATGCACTCTGATATTTTAAAACATCGAATGCACTTG
Found at i:2785087 original size:17 final size:19
Alignment explanation
Indices: 2785059--2785107 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
2785049 TATTTTGAAA
2785059 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
2785077 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
2785096 CACCGATGCACT
1 CATCGATGCACT
2785108 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:2790946 original size:20 final size:20
Alignment explanation
Indices: 2790921--2790972 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
2790911 TCCTTGAATG
2790921 TGCATCGATGCACAGGGTCA
1 TGCATCGATGCACAGGGTCA
2790941 TGCATCGATGCACAGGGTCA
1 TGCATCGATGCACAGGGTCA
2790961 TGCATCGATGCA
1 TGCATCGATGCA
2790973 TCCGTCGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (20 bp):
TGCATCGATGCACAGGGTCA
Found at i:2792542 original size:17 final size:18
Alignment explanation
Indices: 2792520--2792560 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
2792510 GAAACATCAA
2792520 ATGCATTCT-ATGCACCG
1 ATGCATTCTCATGCACCG
*
2792537 ATGCATTCTCCATGCATCG
1 ATGCATTCT-CATGCACCG
2792556 ATGCA
1 ATGCA
2792561 CTCTGATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
19 12 0.57
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (18 bp):
ATGCATTCTCATGCACCG
Found at i:2792590 original size:64 final size:66
Alignment explanation
Indices: 2792462--2792605 Score: 163
Period size: 64 Copynumber: 2.2 Consensus size: 66
2792452 TTTCAAAGGC
*
2792462 ATGCACCGATGCATAAATACCATGCATCGATGCATCAATGGATAAATTGAAACATCAAATGCATT
1 ATGCACCGATGCATAAATACCATGCATCGATGCATC-ATGGATAAATTAAAACATCAAATGCATT
2792527 CT-
65 -TG
** * *
2792529 ATGCACCGATGCAT-TCT-CCATGCATCGATGCACTC-T-GATTTAATTAAAACATCGAATGCAT
1 ATGCACCGATGCATAAATACCATGCATCGATGCA-TCATGGA-TAAATTAAAACATCAAATGCAT
2792590 TTG
64 TTG
*
2792593 ATGCATCGATGCA
1 ATGCACCGATGCA
2792606 CTCGGGCTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
63 3 0.04
64 33 0.49
65 15 0.22
66 3 0.04
67 14 0.21
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (66 bp):
ATGCACCGATGCATAAATACCATGCATCGATGCATCATGGATAAATTAAAACATCAAATGCATTT
G
Found at i:2792603 original size:45 final size:44
Alignment explanation
Indices: 2792548--2792654 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 44
2792538 TGCATTCTCC
*
2792548 ATGCATCGATGCACTCTGAT-TTAATTAAAACATCGAATGCATTTG
1 ATGCATCGATGCACTCTGATATT--TTAAAACATCGAATGCACTTG
* * * *
2792593 ATGCATCGATGCACTCGGGCTATTTTGAAACATCGAATGTACTTG
1 ATGCATCGATGCACTC-TGATATTTTAAAACATCGAATGCACTTG
*
2792638 ATGCATTGATGCACTCT
1 ATGCATCGATGCACTCT
2792655 TAGTGCACCG
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
45 49 0.92
46 2 0.04
47 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (44 bp):
ATGCATCGATGCACTCTGATATTTTAAAACATCGAATGCACTTG
Found at i:2794036 original size:90 final size:89
Alignment explanation
Indices: 2793883--2794057 Score: 278
Period size: 90 Copynumber: 2.0 Consensus size: 89
2793873 CCTAACACAC
* * * *
2793883 CCTTTTATAGCCAAGTTACCCTAGTCATATTAGGGTTTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCATAATCATATCAGGGATTTTATTATTTCAAATTAATTAAATCTAT
*
2793948 ATTTAATTAATTAGAATTTAATAAT
66 ATTTAATTAATT-GAAATTAATAAT
* *
2793973 CCTTTTATATCCGAGTTACCATAATCATATCAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCATAATCATATCAGGGATTTTATTATTTCAAATTAATTAAATCTAT
2794038 ATTTAATTAATTGAAATTAA
66 ATTTAATTAATTGAAATTAA
2794058 ATATTCGGAA
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 7 0.09
90 71 0.91
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (89 bp):
CCTTTTATAGCCAAGTTACCATAATCATATCAGGGATTTTATTATTTCAAATTAATTAAATCTAT
ATTTAATTAATTGAAATTAATAAT
Found at i:2794682 original size:20 final size:20
Alignment explanation
Indices: 2794657--2794697 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
2794647 AGTATTGATC
2794657 TCAAGTATGAGGATCATACA
1 TCAAGTATGAGGATCATACA
2794677 TCAAGTATGAGGATCATACA
1 TCAAGTATGAGGATCATACA
2794697 T
1 T
2794698 ATACCCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (20 bp):
TCAAGTATGAGGATCATACA
Found at i:2804967 original size:71 final size:72
Alignment explanation
Indices: 2804847--2804989 Score: 243
Period size: 71 Copynumber: 2.0 Consensus size: 72
2804837 TAGTCAAGTG
* *
2804847 ACCATTTTGTAACTTTTAATAGTCAAAAGACTCAACAAAGCAACGCCCTATAGTTGAGGGACCAT
1 ACCATTTTGTAACTTTTAATAGTCAAAAGACTCAACAAAGCAACACCCTATAGTCGAGGGACCAT
2804912 TT-TGTA
66 TTGTGTA
* *
2804918 ACCATTTTGTAACTTTTAATAGTCAAATGACTCAACAAAGCAACACCCTATAGTCGATGGACCAT
1 ACCATTTTGTAACTTTTAATAGTCAAAAGACTCAACAAAGCAACACCCTATAGTCGAGGGACCAT
2804983 TTGTGTA
66 TTGTGTA
2804990 CTTCATCCAA
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 63 0.94
72 4 0.06
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (72 bp):
ACCATTTTGTAACTTTTAATAGTCAAAAGACTCAACAAAGCAACACCCTATAGTCGAGGGACCAT
TTGTGTA
Found at i:2805689 original size:43 final size:39
Alignment explanation
Indices: 2805610--2805709 Score: 114
Period size: 43 Copynumber: 2.5 Consensus size: 39
2805600 GGGGTTTTTG
2805610 TATT-AAAATAAT-ATTATTAATTAATATATTTTATTATT
1 TATTAAAAATAATAATTATTAATTAATATATTTTATTA-T
* *
2805648 TATTAAAAATAATAGATTAGTTAACTTATTATTTTTTATTAT
1 TATTAAAAATAATA-ATTA-TTAA-TTAATATATTTTATTAT
2805690 TATTAATAAATTAATAATTA
1 TATTAA-AAA-TAATAATTA
2805710 CTATTTAGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
38 4 0.08
39 8 0.15
41 4 0.08
42 11 0.21
43 21 0.40
44 5 0.09
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (39 bp):
TATTAAAAATAATAATTATTAATTAATATATTTTATTAT
Found at i:2806340 original size:25 final size:26
Alignment explanation
Indices: 2806290--2806342 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
2806280 TAATAGCTAC
*
2806290 TTATTTATATTATATTTATCCAAAAA
1 TTATTTATATTATATTTATACAAAAA
*
2806316 TTATTTATATCT-T-TTTATACGAAAA
1 TTATTTATAT-TATATTTATACAAAAA
2806341 TT
1 TT
2806343 TTGTGTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.50
26 11 0.46
27 1 0.04
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.53
Consensus pattern (26 bp):
TTATTTATATTATATTTATACAAAAA
Found at i:2806822 original size:24 final size:24
Alignment explanation
Indices: 2806795--2806869 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
2806785 TACTTTGAAC
2806795 AATTAATTTAATAGTACATAAATA
1 AATTAATTTAATAGTACATAAATA
* * * *
2806819 AATTAATTTCAT--TACTTTGAA-C
1 AATTAATTTAATAGTAC-ATAAATA
2806841 AATTAATTTAATAGTACATAAATA
1 AATTAATTTAATAGTACATAAATA
2806865 AATTA
1 AATTA
2806870 TAGAAAATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
22 14 0.36
23 6 0.15
24 19 0.49
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (24 bp):
AATTAATTTAATAGTACATAAATA
Found at i:2806845 original size:46 final size:46
Alignment explanation
Indices: 2806778--2806869 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
2806768 ATTGTTATAT
2806778 ATTTCATTACTTTGAACAATTAATTTAATAGTACATAAATAAATTA
1 ATTTCATTACTTTGAACAATTAATTTAATAGTACATAAATAAATTA
2806824 ATTTCATTACTTTGAACAATTAATTTAATAGTACATAAATAAATTA
1 ATTTCATTACTTTGAACAATTAATTTAATAGTACATAAATAAATTA
2806870 TAGAAAATTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (46 bp):
ATTTCATTACTTTGAACAATTAATTTAATAGTACATAAATAAATTA
Found at i:2806847 original size:22 final size:22
Alignment explanation
Indices: 2806778--2806849 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
2806768 ATTGTTATAT
2806778 ATTTCATTACTTTGAACAATTA
1 ATTTCATTACTTTGAACAATTA
* * * *
2806800 ATTTAATAGTAC-ATAAATAAATTA
1 ATTTCAT--TACTTTGAA-CAATTA
2806824 ATTTCATTACTTTGAACAATTA
1 ATTTCATTACTTTGAACAATTA
2806846 ATTT
1 ATTT
2806850 AATAGTACAT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
22 18 0.47
23 6 0.16
24 14 0.37
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (22 bp):
ATTTCATTACTTTGAACAATTA
Found at i:2807227 original size:29 final size:29
Alignment explanation
Indices: 2807192--2807256 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
2807182 ATGAAATTAT
*
2807192 AAAAATTGGGAACCT-TAACTATAAATATA
1 AAAAATT-GAAACCTCTAACTATAAATATA
* *
2807221 AAAAATTGAAAGCTCTAATTATAAATATA
1 AAAAATTGAAACCTCTAACTATAAATATA
2807250 AAAAATT
1 AAAAATT
2807257 TGGGGGCCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 5 0.16
29 27 0.84
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (29 bp):
AAAAATTGAAACCTCTAACTATAAATATA
Found at i:2810649 original size:17 final size:17
Alignment explanation
Indices: 2810627--2810661 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
2810617 TATCAATAGT
2810627 AAATATAAAATAAATTA
1 AAATATAAAATAAATTA
* *
2810644 AAATATATAATAATTTA
1 AAATATAAAATAAATTA
2810661 A
1 A
2810662 TATTTTTAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATATAAAATAAATTA
Found at i:2812970 original size:29 final size:30
Alignment explanation
Indices: 2812885--2812970 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 30
2812875 ATTAGTTCTT
*
2812885 AAACTTTTGAA-CATTCCAATTTCATCCTC
1 AAACTTTTGAATCATTCCAATTTCATCCCC
* * * * **
2812914 AAA-TTGTGACTCATTCTAAATTGGTCCCC
1 AAACTTTTGAATCATTCCAATTTCATCCCC
*
2812943 AAACTTTTGAATC-TTCCAATTTTATCCC
1 AAACTTTTGAATCATTCCAATTTCATCCC
2812971 TAAATTCATC
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
28 5 0.12
29 30 0.71
30 7 0.17
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGAATCATTCCAATTTCATCCCC
Found at i:2813136 original size:60 final size:60
Alignment explanation
Indices: 2813010--2813141 Score: 146
Period size: 60 Copynumber: 2.2 Consensus size: 60
2813000 TTAGTATAAT
* * * * *
2813010 GATCATATTTTGGGGATGAAACTGAAATGTTAAAGACTTTAAGGACTAATTTAAAATAATA
1 GATCATAATTTAGGGATCAAACTAAAATGTTAAAGAATTTAAGGACTAATTTAAAAT-ATA
*
2813071 G-TCATAATTTAGGGATCAAATTAAAATGTTTAAA-AATTT-AGAGACTAATTTAAAAT-TA
1 GATCATAATTTAGGGATCAAACTAAAATG-TTAAAGAATTTAAG-GACTAATTTAAAATATA
2813129 GGATCATAATTTA
1 -GATCATAATTTA
2813142 AGAAAGTGTG
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
58 2 0.03
59 3 0.05
60 50 0.82
61 6 0.10
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (60 bp):
GATCATAATTTAGGGATCAAACTAAAATGTTAAAGAATTTAAGGACTAATTTAAAATATA
Found at i:2813936 original size:16 final size:16
Alignment explanation
Indices: 2813915--2813953 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
2813905 ATATTTATAC
2813915 ATTATAAATAAAAATA
1 ATTATAAATAAAAATA
* *
2813931 ATTATAAATTAAATTA
1 ATTATAAATAAAAATA
2813947 A-TATAAA
1 ATTATAAA
2813954 ACTTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTATAAATAAAAATA
Found at i:2816507 original size:11 final size:11
Alignment explanation
Indices: 2816489--2816527 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
2816479 AGACTCAAAA
2816489 TATTATTTTAT
1 TATTATTTTAT
2816500 CT-TTATTTTAT
1 -TATTATTTTAT
2816511 TATTATTTTAT
1 TATTATTTTAT
2816522 TCATTA
1 T-ATTA
2816528 GTTACTTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.04
11 19 0.76
12 5 0.20
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:2818442 original size:33 final size:33
Alignment explanation
Indices: 2818400--2818464 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
2818390 TATAACATCG
2818400 GATGTTTATATTATGTTCATTATCGCCACTAAT
1 GATGTTTATATTATGTTCATTATCGCCACTAAT
2818433 GATGTTTATATTATGTTCATTATCGCCACTAA
1 GATGTTTATATTATGTTCATTATCGCCACTAA
2818465 GGTCACATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (33 bp):
GATGTTTATATTATGTTCATTATCGCCACTAAT
Found at i:2819494 original size:54 final size:54
Alignment explanation
Indices: 2819407--2819875 Score: 575
Period size: 54 Copynumber: 8.6 Consensus size: 54
2819397 TAAACATATT
* * * *
2819407 ATGAATTCCGTGGAAATGCACACTTAATGCCGAAATGGTTATTCATCCACATAGG
1 ATGAATTCC-TTGAAATGCACACTTAGTGCCGAAACGGTTGTTCATCCACATAGG
*** * * *
2819462 ATGAATTCCTTGAAATGCACACTTAGTGCCGAAATAATTATTCATCTACGTAGG
1 ATGAATTCCTTGAAATGCACACTTAGTGCCGAAACGGTTGTTCATCCACATAGG
* * * *
2819516 ATGAATTCCGTGAAATACACACTTAGTGCCGAAACGGTTGTTCATCCACGTTGG
1 ATGAATTCCTTGAAATGCACACTTAGTGCCGAAACGGTTGTTCATCCACATAGG
* * *
2819570 ATGAATTTCATGAAATGCACACTTAGTGCTGAAACGGTTGTTCATCCACATAGG
1 ATGAATTCCTTGAAATGCACACTTAGTGCCGAAACGGTTGTTCATCCACATAGG
* *
2819624 ATGAATT-CTATGAAATGCACACACTTAGTGCCAAAACGGTTGTTCATCCATATAGG
1 ATGAATTCCT-TGAAATG--CACACTTAGTGCCGAAACGGTTGTTCATCCACATAGG
* *
2819680 ATGAATT-CTATGAAATGTACACACTTAGTGCCGAAACGATTGTTCAT-CAGCATAGA
1 ATGAATTCCT-TGAAATG--CACACTTAGTGCCGAAACGGTTGTTCATCCA-CATAGG
* *
2819736 ATGAATTTCGTGAAATGCACACACTTAGTGCCGAAACGGTTGTTCATCCACATAGG
1 ATGAATTCCTTGAAATG--CACACTTAGTGCCGAAACGGTTGTTCATCCACATAGG
* * * *
2819792 ATGAATTCCGTGAAATGCACACTTAGTGTCGAAACGGTTATTCATCCACGTAGG
1 ATGAATTCCTTGAAATGCACACTTAGTGCCGAAACGGTTGTTCATCCACATAGG
*
2819846 ATGAATTCCCTGAAATGCACACTTAGTGCC
1 ATGAATTCCTTGAAATGCACACTTAGTGCC
2819876 AATTTGGTAA
Statistics
Matches: 369, Mismatches: 39, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.00
54 209 0.57
55 11 0.03
56 145 0.39
57 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (54 bp):
ATGAATTCCTTGAAATGCACACTTAGTGCCGAAACGGTTGTTCATCCACATAGG
Found at i:2820274 original size:22 final size:19
Alignment explanation
Indices: 2820237--2820289 Score: 106
Period size: 19 Copynumber: 2.8 Consensus size: 19
2820227 TACTACCACA
2820237 TTATGGTATCGATACTACT
1 TTATGGTATCGATACTACT
2820256 TTATGGTATCGATACTACT
1 TTATGGTATCGATACTACT
2820275 TTATGGTATCGATAC
1 TTATGGTATCGATAC
2820290 CATTTTTGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (19 bp):
TTATGGTATCGATACTACT
Found at i:2820337 original size:20 final size:19
Alignment explanation
Indices: 2820312--2820362 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
2820302 CTATTTTGAA
*
2820312 TGGTATCGATACCTTACCTT
1 TGGTATCGATA-CTCACCTT
*
2820332 TGGTATCGATACTCCCCTT
1 TGGTATCGATACTCACCTT
2820351 TCGGTATCGATA
1 T-GGTATCGATA
2820363 TTACCTAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 7 0.25
20 21 0.75
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (19 bp):
TGGTATCGATACTCACCTT
Found at i:2826488 original size:54 final size:54
Alignment explanation
Indices: 2826394--2826914 Score: 697
Period size: 54 Copynumber: 9.6 Consensus size: 54
2826384 TAAACATATT
* * *
2826394 ATGAATTCTGTGGAAATACACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
1 ATGAATTCCGT-GAAATGCACACTTAGTGCCGAAAAGGTTATTCATCCACATAGG
* * * *
2826449 ATGAATTCCTTGAAATACGCACTTAGTGCCGAAAAGGTTATTCATCCACGTAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAAAGGTTATTCATCCACATAGG
*
2826503 ATGAATTCCGTGAAATGCACACTTAGTGTCGAAACA-GTTATTCATCCACATAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAA-AGGTTATTCATCCACATAGG
* ** *
2826557 ATGAATTCCGTGAAATGCACACTTGGTGCCGAAACTGTTGTTCATCCACATAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAAAGGTTATTCATCCACATAGG
* *
2826611 ATGAATTCCGTGAAATGCACACATTTAGTGCC-AAAATGGTTGTTCATCCACATAAG
1 ATGAATTCCGTGAAATGCACAC--TTAGTGCCGAAAA-GGTTATTCATCCACATAGG
* * *
2826667 ATGAATTCCGTGAAATGCACACACTTAGTGCCGAAACGGTTGTTCATCCACATGGG
1 ATGAATTCCGTGAAATG--CACACTTAGTGCCGAAAAGGTTATTCATCCACATAGG
* * * *
2826723 ATGAATTTCGTGAAATGCACACTTTGTGCTGAAACA-GTTATTCATCCACGTAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAA-AGGTTATTCATCCACATAGG
* *
2826777 ATGAATTCCATGAAATGCACACTTAGTGCCGAAATGGTTATTCATCCACATAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAAAGGTTATTCATCCACATAGG
* * *
2826831 ATGAATTCCGTGAAATGCACACTTAGTGCTGAAAGGGTTGTTCATCCACATAGG
1 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAAAGGTTATTCATCCACATAGG
* *
2826885 ATGAATTCCATGAATTGCACACTTAGTGCC
1 ATGAATTCCGTGAAATGCACACTTAGTGCC
2826915 TATTTGGTAA
Statistics
Matches: 415, Mismatches: 41, Indels: 21
0.87 0.09 0.04
Matches are distributed among these distances:
54 312 0.75
55 13 0.03
56 82 0.20
57 3 0.01
58 5 0.01
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (54 bp):
ATGAATTCCGTGAAATGCACACTTAGTGCCGAAAAGGTTATTCATCCACATAGG
Found at i:2826778 original size:274 final size:271
Alignment explanation
Indices: 2826394--2826914 Score: 812
Period size: 274 Copynumber: 1.9 Consensus size: 271
2826384 TAAACATATT
* *
2826394 ATGAATTCTGTGGAAATACACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCT
1 ATGAATTCCGTGGAAATACACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCG
* *
2826459 TGAAATACGCACTTAGTGCCGAAAAGGTTATTCATCCACGTAGGATGAATTCCGTGAAATGCACA
66 TGAAATACACACTTAGTGCCGAAAAGGTTATTCATCCACGTAGGATGAATTCCATGAAATGCACA
* *
2826524 CTTAGTGTCGAAACAGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTGGTGCCGA
131 CTTAGTGCCGAAACAGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGA
* *
2826589 AACTGTTGTTCATCCACATAGGATGAATTCCGTGAAATGCACACATTTAGTGCCAAAATGGTTGT
196 AACGGTTGTTCATCCACATAGGATGAATTCCATGAAATGCACAC--TTAGTGCCAAAATGGTTGT
2826654 TCATCCACATAAG
259 TCATCCACATAAG
* * *
2826667 ATGAATTCCGT-GAAATGCACACACTTAGTGCCGAAACGGTTGTTCATCCACATGGGATGAATTT
1 ATGAATTCCGTGGAAAT--ACACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTC
* * *
2826731 CGTGAAATGCACACTTTGTGCTGAAACA-GTTATTCATCCACGTAGGATGAATTCCATGAAATGC
64 CGTGAAATACACACTTAGTGCCGAAA-AGGTTATTCATCCACGTAGGATGAATTCCATGAAATGC
**
2826795 ACACTTAGTGCCGAAATGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGC
128 ACACTTAGTGCCGAAACAGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGC
* * *
2826860 TGAAAGGGTTGTTCATCCACATAGGATGAATTCCATGAATTGCACACTTAGTGCC
193 CGAAACGGTTGTTCATCCACATAGGATGAATTCCATGAAATGCACACTTAGTGCC
2826915 TATTTGGTAA
Statistics
Matches: 226, Mismatches: 19, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
272 13 0.06
273 10 0.04
274 202 0.89
275 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (271 bp):
ATGAATTCCGTGGAAATACACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCG
TGAAATACACACTTAGTGCCGAAAAGGTTATTCATCCACGTAGGATGAATTCCATGAAATGCACA
CTTAGTGCCGAAACAGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGA
AACGGTTGTTCATCCACATAGGATGAATTCCATGAAATGCACACTTAGTGCCAAAATGGTTGTTC
ATCCACATAAG
Found at i:2833404 original size:21 final size:21
Alignment explanation
Indices: 2833378--2833417 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2833368 CCCCCTTTGA
*
2833378 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
2833399 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
2833418 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:2838746 original size:6 final size:6
Alignment explanation
Indices: 2838715--2838745 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
2838705 AAAAAAAATT
2838715 GGTGGG GGTGGG GGTGGG GGTGGG GG-GGG GG
1 GGTGGG GGTGGG GGTGGG GGTGGG GGTGGG GG
2838746 GAGAGGAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.00, C:0.00, G:0.87, T:0.13
Consensus pattern (6 bp):
GGTGGG
Found at i:2842073 original size:267 final size:267
Alignment explanation
Indices: 2841683--2842219 Score: 1074
Period size: 267 Copynumber: 2.0 Consensus size: 267
2841673 CACCATCATG
2841683 TTTCATGTCATGAAGAGAATGCAGTAAGCCTTCCAAGAACTCATCAATGGTCTTTTTCATGCAAG
1 TTTCATGTCATGAAGAGAATGCAGTAAGCCTTCCAAGAACTCATCAATGGTCTTTTTCATGCAAG
2841748 GAAACCATCAAAAGAAAATATTTAGTTTTCCATAGTTATATTTATGTTTCTTTGGGTCATCAGTA
66 GAAACCATCAAAAGAAAATATTTAGTTTTCCATAGTTATATTTATGTTTCTTTGGGTCATCAGTA
2841813 AGATCATGTATCGTACAGGAATACACATATTCGACACCACAAACTGAATATGGACAAATGGGAGG
131 AGATCATGTATCGTACAGGAATACACATATTCGACACCACAAACTGAATATGGACAAATGGGAGG
2841878 CTGACTACAAACATAAGGGAAAACTTAGGAAATATGAACATGCTCCTGTCAAACAAACGTCCATG
196 CTGACTACAAACATAAGGGAAAACTTAGGAAATATGAACATGCTCCTGTCAAACAAACGTCCATG
2841943 CCCAACA
261 CCCAACA
2841950 TTTCATGTCATGAAGAGAATGCAGTAAGCCTTCCAAGAACTCATCAATGGTCTTTTTCATGCAAG
1 TTTCATGTCATGAAGAGAATGCAGTAAGCCTTCCAAGAACTCATCAATGGTCTTTTTCATGCAAG
2842015 GAAACCATCAAAAGAAAATATTTAGTTTTCCATAGTTATATTTATGTTTCTTTGGGTCATCAGTA
66 GAAACCATCAAAAGAAAATATTTAGTTTTCCATAGTTATATTTATGTTTCTTTGGGTCATCAGTA
2842080 AGATCATGTATCGTACAGGAATACACATATTCGACACCACAAACTGAATATGGACAAATGGGAGG
131 AGATCATGTATCGTACAGGAATACACATATTCGACACCACAAACTGAATATGGACAAATGGGAGG
2842145 CTGACTACAAACATAAGGGAAAACTTAGGAAATATGAACATGCTCCTGTCAAACAAACGTCCATG
196 CTGACTACAAACATAAGGGAAAACTTAGGAAATATGAACATGCTCCTGTCAAACAAACGTCCATG
2842210 CCCAACA
261 CCCAACA
2842217 TTT
1 TTT
2842220 ATCCTAACAG
Statistics
Matches: 270, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
267 270 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (267 bp):
TTTCATGTCATGAAGAGAATGCAGTAAGCCTTCCAAGAACTCATCAATGGTCTTTTTCATGCAAG
GAAACCATCAAAAGAAAATATTTAGTTTTCCATAGTTATATTTATGTTTCTTTGGGTCATCAGTA
AGATCATGTATCGTACAGGAATACACATATTCGACACCACAAACTGAATATGGACAAATGGGAGG
CTGACTACAAACATAAGGGAAAACTTAGGAAATATGAACATGCTCCTGTCAAACAAACGTCCATG
CCCAACA
Found at i:2845677 original size:19 final size:19
Alignment explanation
Indices: 2845646--2845686 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
2845636 TATTGATTTT
2845646 TTTAAAAAAAAATTAT-AA
1 TTTAAAAAAAAATTATGAA
*
2845664 TTTAAAAAGTAAATTATGAA
1 TTTAAAAA-AAAATTATGAA
2845684 TTT
1 TTT
2845687 TCATATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 7 0.35
20 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
TTTAAAAAAAAATTATGAA
Found at i:2847046 original size:3 final size:3
Alignment explanation
Indices: 2847040--2847086 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
2847030 TAATATATTT
*
2847040 TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA T-A TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2847087 ATATAATGGA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:2847549 original size:112 final size:112
Alignment explanation
Indices: 2847407--2848072 Score: 914
Period size: 112 Copynumber: 5.9 Consensus size: 112
2847397 AGAATTATGC
* * * *
2847407 AAAAAGTTGAAC-AGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
2847471 TATGAACTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
2847518 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * ***
2847583 TATGAACTTCTCTGGAAAAGCTGATCCATCAATTGATGAATTCAAACC
66 TATGAACTTCTCTGGAAAAGATAATCCATCAATTGATGAATTC-AGGT
*
2847631 AAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
2847696 TATGAACTTTCTCTGGAAAA-ATAATCCATCATTTGATGAATTTAGGT
66 TATGAAC-TTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
*
2847743 AAAAGGTTGAACAAATTTTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCT
* * * * * * ***
2847808 CATTATGAAC-TCTTCCTGGCAATGTTGATCCCTCAAATGATGAATTCAAACC
63 CATTATGAACTTC-T-CTGGAAAAGATAATCCATCAATTGATGAATTC-AGGT
*
2847860 AAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAG---TTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
2847922 TATGAACTTTCTCTGAAAAAAATAATCCATCAATTTGATGAATTTAGGT
66 TATGAAC-TTCTCTGGAAAAGATAATCCATCAA-TTGATGAATTCAGGT
2847971 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT-TCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * *
2848035 TATGAACCTTTTCTGGAAAAGCTAATCTATCAAATGAT
66 TATGAA-CTTCTCTGGAAAAGATAATCCATCAATTGAT
2848073 AGATTTGAAT
Statistics
Matches: 487, Mismatches: 51, Indels: 33
0.85 0.09 0.06
Matches are distributed among these distances:
111 94 0.19
112 155 0.32
113 125 0.26
114 19 0.04
115 26 0.05
116 17 0.03
117 51 0.10
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (112 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
Found at i:2847678 original size:225 final size:225
Alignment explanation
Indices: 2847406--2848072 Score: 1069
Period size: 225 Copynumber: 3.0 Consensus size: 225
2847396 TAGAATTATG
* * *
2847406 CAAAAAGTTGAAC-AGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
2847470 TTATGAAC-TTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGTAAAAGGTTGAACAAAT
66 TTATGAACTTTCTCTGGAAAA-ATAATCCATCAATTGATGAATTTAGGTAAAAGGTTGAACAAAT
2847534 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGA
130 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGA
*
2847599 AAAGCTGATCCATCAATTGATGAATTCAAAC
195 AAAGCTGATCCATCAAATGATGAATTCAAAC
2847630 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
2847695 TTATGAACTTTCTCTGGAAAAATAATCCATCATTTGATGAATTTAGGTAAAAGGTTGAACAAATT
66 TTATGAACTTTCTCTGGAAAAATAATCCATCAATTGATGAATTTAGGTAAAAGGTTGAACAAATT
*
2847760 TTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAAC-TCTTCC
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTTC-T-C
* * * *
2847824 TGGCAATGTTGATCCCTCAAATGATGAATTCAAAC
191 TGGAAAAGCTGATCCATCAAATGATGAATTCAAAC
2847859 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAG---TTCTCA
1 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
2847921 TTATGAACTTTCTCTGAAAAAAATAATCCATCAATTTGATGAATTTAGGTAAAAGGTTGAACAAA
66 TTATGAACTTTCTCTG-GAAAAATAATCCATCAA-TTGATGAATTTAGGTAAAAGGTTGAACAAA
*
2847986 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT-TCATTATGAACCTTTTCTG
129 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA-CTTCTCTG
* *
2848050 GAAAAGCTAATCTATCAAATGAT
193 GAAAAGCTGATCCATCAAATGAT
2848073 AGATTTGAAT
Statistics
Matches: 411, Mismatches: 21, Indels: 22
0.91 0.05 0.05
Matches are distributed among these distances:
224 42 0.10
225 143 0.35
226 35 0.09
227 17 0.04
228 87 0.21
229 87 0.21
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (225 bp):
CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTTTCTCTGGAAAAATAATCCATCAATTGATGAATTTAGGTAAAAGGTTGAACAAATT
CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAA
AAGCTGATCCATCAAATGATGAATTCAAAC
Found at i:2848967 original size:84 final size:84
Alignment explanation
Indices: 2848777--2849419 Score: 875
Period size: 84 Copynumber: 7.6 Consensus size: 84
2848767 CCTACTGAAT
* * * *
2848777 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGTCTCCTTCATATTTCTAAATT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAG-CACATTCATCTTTCTAAATT
* * * * **
2848842 CAATAACTAGTTTTACCAAAC
64 CAATGATTGGTTCTGTCAAAC
*
2848863 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCAAAATTCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCTAAATTCA
*
2848928 ATGATTGGTTCTGTCTAAC
66 ATGATTGGTTCTGTCAAAC
2848947 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC-TTCTAAATTCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCTAAATTCA
2849011 ATGATTGGTTCTGTC-AAC
66 ATGATTGGTTCTGTCAAAC
2849029 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC-TTCTAAATTC-
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCTAAATTCA
*
2849092 ATGATTGGTTCTGTCTAAC
66 ATGATTGGTTCTGTCAAAC
* * *
2849111 CAGATCAGATAACTC-AAGAACACTTCCAGAAGATGCTATTGGGTCTCCTTCATCTTTCTAAATT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAG-CACATTCATCTTTCTAAATT
* * * * **
2849175 CAATAACTAGTTTTACCAAAC
64 CAATGATTGGTTCTGTCAAAC
* *
2849196 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCCAAAATTCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCTAAATTCA
*
2849261 ATGATTGGTTCTGTCTAAC
66 ATGATTGGTTCTGTCAAAC
* * *
2849280 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATG-TATTGGGTCTCCTTCATCTTTCTAAATT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAG-CACATTCATCTTTCTAAATT
* * * * **
2849344 CAATAAACTAGTTTTACCAAAC
64 CAAT-GATTGGTTCTGTCAAAC
2849366 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCT
2849420 GTTCCAGTTA
Statistics
Matches: 497, Mismatches: 50, Indels: 21
0.88 0.09 0.04
Matches are distributed among these distances:
81 38 0.08
82 87 0.18
83 35 0.07
84 162 0.33
85 62 0.12
86 111 0.22
87 2 0.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (84 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCTAAATTCA
ATGATTGGTTCTGTCAAAC
Found at i:2849398 original size:170 final size:169
Alignment explanation
Indices: 2848777--2849419 Score: 1111
Period size: 170 Copynumber: 3.8 Consensus size: 169
2848767 CCTACTGAAT
*
2848777 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGTCTCCTTCATATTTCTAAATT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGTCTCCTTCATCTTTCTAAATT
2848842 CAATAACTAGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
66 CAATAACTAGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
2848907 ACATTCATCTTTCAAAATTCAATGATTGGTTCTGTCTAAC
131 ACATTCATC-TTCAAAATTCAATGATTGGTTCTGTCTAAC
* * *
2848947 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAG-CACATTCATC-TTCTAAATT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGTCTCCTTCATCTTTCTAAATT
* * * * **
2849009 CAATGATTGGTTCTGTC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
66 CAATAACTAGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
*
2849073 ACATTCATCTTCTAAATTC-ATGATTGGTTCTGTCTAAC
131 ACATTCATCTTCAAAATTCAATGATTGGTTCTGTCTAAC
2849111 CAGATCAGATAACTC-AAGAACACTTCCAGAAGATGCTATTGGGTCTCCTTCATCTTTCTAAATT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGTCTCCTTCATCTTTCTAAATT
2849175 CAATAACTAGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
66 CAATAACTAGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
2849240 ACATTCATCTTCCAAAATTCAATGATTGGTTCTGTCTAAC
131 ACATTCATCTT-CAAAATTCAATGATTGGTTCTGTCTAAC
2849280 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATG-TATTGGGTCTCCTTCATCTTTCTAAATT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGTCTCCTTCATCTTTCTAAATT
2849344 CAATAAACTAGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAG
66 CAAT-AACTAGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAG
2849409 CACATTCATCT
130 CACATTCATCT
2849420 GTTCCAGTTA
Statistics
Matches: 444, Mismatches: 21, Indels: 16
0.92 0.04 0.03
Matches are distributed among these distances:
163 23 0.05
164 37 0.08
165 17 0.04
166 76 0.17
167 78 0.18
168 14 0.03
169 69 0.16
170 130 0.29
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (169 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGGTCTCCTTCATCTTTCTAAATT
CAATAACTAGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGC
ACATTCATCTTCAAAATTCAATGATTGGTTCTGTCTAAC
Found at i:2850573 original size:10 final size:9
Alignment explanation
Indices: 2850546--2850628 Score: 69
Period size: 9 Copynumber: 8.8 Consensus size: 9
2850536 CCTTGACCCC
2850546 CTTTCTTTTT
1 CTTT-TTTTT
*
2850556 CTTCTTTTT
1 CTTTTTTTT
*
2850565 CTCTTTTTT
1 CTTTTTTTT
2850574 CTTTTTTCTAT
1 CTTTTTT-T-T
2850585 -TTTTTTTT
1 CTTTTTTTT
*
2850593 ATTTATTTTT
1 CTTT-TTTTT
2850603 CTTTATTTTT
1 CTTT-TTTTT
*
2850613 CTTTTATTT
1 CTTTTTTTT
*
2850622 ATTTTTT
1 CTTTTTT
2850629 CTTCAAGCAT
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
8 1 0.02
9 31 0.51
10 28 0.46
11 1 0.02
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:2850575 original size:15 final size:14
Alignment explanation
Indices: 2850547--2850631 Score: 53
Period size: 15 Copynumber: 5.4 Consensus size: 14
2850537 CTTGACCCCC
2850547 TTTCTTTTTCTTCTTT
1 TTTC-TTTT-TTCTTT
2850563 TTCTCTTTTTTCTTT
1 TT-TCTTTTTTCTTT
*
2850578 TTTCTATTTTTTTTT
1 TTTCT-TTTTTCTTT
* *
2850593 ATTTATTTTTCTTTATT
1 -TTTCTTTTT-TCT-TT
*
2850610 TTTCTTTTATTTATTT
1 TTTC-TTT-TTTCTTT
2850626 TTTCTT
1 TTTCTT
2850632 CAAGCATAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
14 3 0.05
15 22 0.38
16 22 0.38
17 9 0.16
18 2 0.03
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTCTTTTTTCTTT
Found at i:2850588 original size:25 final size:24
Alignment explanation
Indices: 2850547--2850631 Score: 79
Period size: 24 Copynumber: 3.5 Consensus size: 24
2850537 CTTGACCCCC
*
2850547 TTTC-TTTTTCTTCTTTTTCTCTTT
1 TTTCTTTTTTCTTATTTTTCT-TTT
2850571 TTTCTTTTTTC-TATTTTT-TTTT
1 TTTCTTTTTTCTTATTTTTCTTTT
*
2850593 ATTT-ATTTTTCTTTATTTTTCTTTT
1 -TTTCTTTTTTC-TTATTTTTCTTTT
*
2850618 ATTTATTTTTTCTT
1 -TTTCTTTTTTCTT
2850632 CAAGCATAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
22 9 0.17
23 4 0.08
24 17 0.33
25 16 0.31
26 6 0.12
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (24 bp):
TTTCTTTTTTCTTATTTTTCTTTT
Found at i:2850618 original size:11 final size:12
Alignment explanation
Indices: 2850576--2850621 Score: 57
Period size: 11 Copynumber: 4.2 Consensus size: 12
2850566 TCTTTTTTCT
2850576 TTTTTCTATTT-
1 TTTTTCTATTTA
2850587 TTTTT-TATTTA
1 TTTTTCTATTTA
2850598 TTTTTC--TTTA
1 TTTTTCTATTTA
2850608 TTTTTCT-TTTA
1 TTTTTCTATTTA
2850619 TTT
1 TTT
2850622 ATTTTTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
10 15 0.47
11 17 0.53
ACGTcount: A:0.11, C:0.07, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTCTATTTA
Found at i:2850627 original size:16 final size:15
Alignment explanation
Indices: 2850547--2850631 Score: 59
Period size: 16 Copynumber: 5.4 Consensus size: 15
2850537 CTTGACCCCC
*
2850547 TTTCTTTTTCTT-CTT
1 TTTCTTTTT-TTATTT
*
2850562 TTTCTCTTTTTTCTTT
1 TTTCT-TTTTTTATTT
2850578 TTTCTATTTTTT-TTT
1 TTTCT-TTTTTTATTT
*
2850593 ATTTATTTTTCTT-TATT
1 -TTTCTTTTT-TTAT-TT
2850610 TTTCTTTTATTTATTT
1 TTTCTTTT-TTTATTT
2850626 TTTCTT
1 TTTCTT
2850632 CAAGCATAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
15 14 0.24
16 41 0.69
17 4 0.07
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTCTTTTTTTATTT
Found at i:2850628 original size:11 final size:10
Alignment explanation
Indices: 2850568--2850628 Score: 50
Period size: 11 Copynumber: 5.6 Consensus size: 10
2850558 TCTTTTTCTC
*
2850568 TTTTTTCTTT
1 TTTTTTATTT
*
2850578 TTTCTATTTTTT
1 TTT-T-TTATTT
2850590 TTTATTTATTT
1 TTT-TTTATTT
*
2850601 TTCTTTATTT
1 TTTTTTATTT
2850611 TTCTTTTATTT
1 TT-TTTTATTT
2850622 ATTTTTT
1 -TTTTTT
2850629 CTTCAAGCAT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
10 12 0.29
11 19 0.45
12 11 0.26
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:2862977 original size:55 final size:54
Alignment explanation
Indices: 2862893--2863000 Score: 207
Period size: 55 Copynumber: 2.0 Consensus size: 54
2862883 TCCATATATC
2862893 TTGAGAAATTTGATTTTTCTTTCTATAGCTGCTTTTCAACCCCATGACACAAGCT
1 TTGAGAAATTTGATTTTTCTTTCTATAGCTGC-TTTCAACCCCATGACACAAGCT
2862948 TTGAGAAATTTGATTTTTCTTTCTATAGCTGCTTTCAACCCCATGACACAAGC
1 TTGAGAAATTTGATTTTTCTTTCTATAGCTGCTTTCAACCCCATGACACAAGC
2863001 GTATTCCGCC
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 21 0.40
55 32 0.60
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (54 bp):
TTGAGAAATTTGATTTTTCTTTCTATAGCTGCTTTCAACCCCATGACACAAGCT
Found at i:2872744 original size:13 final size:13
Alignment explanation
Indices: 2872707--2872746 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
2872697 TCGATATTGA
2872707 AAAATAAATA-TT
1 AAAATAAATATTT
*
2872719 AAAATAATTTATTT
1 AAAATAA-ATATTT
2872733 AAAATAAATATTT
1 AAAATAAATATTT
2872746 A
1 A
2872747 TTTATTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 7 0.29
13 8 0.33
14 9 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATAAATATTT
Found at i:2872760 original size:17 final size:17
Alignment explanation
Indices: 2872720--2872768 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
2872710 ATAAATATTA
*
2872720 AAATAATTTATTTAAAAT
1 AAAT-ATTTATTTATAAT
*
2872738 AAATATTTATTTATTAT
1 AAATATTTATTTATAAT
* *
2872755 ATATATATATTTAT
1 AAATATTTATTTAT
2872769 GACTATAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 23 0.85
18 4 0.15
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AAATATTTATTTATAAT
Found at i:2873691 original size:13 final size:13
Alignment explanation
Indices: 2873675--2873699 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2873665 TTAGTATATC
2873675 TTTTTTTTTCTCT
1 TTTTTTTTTCTCT
2873688 TTTTTTTTTCTC
1 TTTTTTTTTCTC
2873700 CGTCTCTCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTTTTCTCT
Found at i:2874182 original size:11 final size:11
Alignment explanation
Indices: 2874159--2874190 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
2874149 TGTAATTAAT
2874159 TATTTATATATA
1 TATTTA-ATATA
2874171 TATTTAATATA
1 TATTTAATATA
2874182 TATTTAATA
1 TATTTAATA
2874191 ATAATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TATTTAATATA
Found at i:2874194 original size:3 final size:3
Alignment explanation
Indices: 2874186--2874229 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
2874176 AATATATATT
2874186 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
2874230 TGGATAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:2874965 original size:27 final size:27
Alignment explanation
Indices: 2874928--2874981 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
2874918 ATGAACTTTC
*
2874928 AAACATTAC-AAATGATCATTAAATTT
1 AAACATTACAAAACGATCATTAAATTT
*
2874954 AAACAGTTACAAAACGGTCATTAAATTT
1 AAACA-TTACAAAACGATCATTAAATTT
2874982 TGTCAAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 4 0.17
28 15 0.62
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.31
Consensus pattern (27 bp):
AAACATTACAAAACGATCATTAAATTT
Found at i:2879857 original size:25 final size:25
Alignment explanation
Indices: 2879829--2879877 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
2879819 GAAGCTCAAA
2879829 TGACTTCTATACTTGGACTTGTAAG
1 TGACTTCTATACTTGGACTTGTAAG
2879854 TGACTTCTATACTTGGACTTGTAA
1 TGACTTCTATACTTGGACTTGTAA
2879878 CCAAGTATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (25 bp):
TGACTTCTATACTTGGACTTGTAAG
Found at i:2882616 original size:29 final size:29
Alignment explanation
Indices: 2882583--2882658 Score: 143
Period size: 29 Copynumber: 2.6 Consensus size: 29
2882573 TACAATCCTT
2882583 ATTGGTGAAGATGAGGTAAATTGTTGGTC
1 ATTGGTGAAGATGAGGTAAATTGTTGGTC
2882612 ATTGGTGAAGATGAGGTAAATTGTTGGTC
1 ATTGGTGAAGATGAGGTAAATTGTTGGTC
*
2882641 ATTGGTGAAGAAGAGGTA
1 ATTGGTGAAGATGAGGTA
2882659 GACCATTCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.30, C:0.03, G:0.36, T:0.32
Consensus pattern (29 bp):
ATTGGTGAAGATGAGGTAAATTGTTGGTC
Found at i:2884609 original size:36 final size:39
Alignment explanation
Indices: 2884504--2884609 Score: 89
Period size: 36 Copynumber: 2.8 Consensus size: 39
2884494 AATAAAAGGA
* * *
2884504 AAAATAAATAAATA-AATAAAATATATATATATAAATGAGT
1 AAAATAGA-AAATATAATATAATATAAATA-ATAAATGAGT
*
2884544 AAAATAGAAAA-ATAATAATCATA-ACAATAAT-AAT-AGT
1 AAAATAGAAAATATAAT-ATAATATA-AATAATAAATGAGT
*
2884581 AATAT-GAAAATATAATATAATATAAATAA
1 AAAATAGAAAATATAATATAATATAAATAA
2884610 AAAAACCAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
36 15 0.27
37 13 0.24
38 4 0.07
39 9 0.16
40 14 0.25
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (39 bp):
AAAATAGAAAATATAATATAATATAAATAATAAATGAGT
Found at i:2884852 original size:21 final size:20
Alignment explanation
Indices: 2884790--2884853 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
2884780 CGCTTATAAG
* *
2884790 TAAA-ATATTTTAAAAAAAG
1 TAAATATATATTAAAAAAAA
* *
2884809 TATATATATATATAAAAATAA
1 TAAATATATAT-TAAAAAAAA
2884830 TAAATATAGTATTAAAAAAAA
1 TAAATATA-TATTAAAAAAAA
2884851 TAA
1 TAA
2884854 CCAAATGAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 3 0.08
20 5 0.14
21 25 0.69
22 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (20 bp):
TAAATATATATTAAAAAAAA
Found at i:2885472 original size:37 final size:37
Alignment explanation
Indices: 2885379--2885480 Score: 123
Period size: 37 Copynumber: 2.8 Consensus size: 37
2885369 GTGCTTGTGG
* * * * *
2885379 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTAT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAACTAT
* * *
2885416 ATCATATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAACTAT
*
2885453 ATCCTATTTTTAGGAGTTTGAATTCTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAG
2885481 TAGGACGAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAACTAT
Found at i:2886375 original size:106 final size:106
Alignment explanation
Indices: 2886171--2887121 Score: 1346
Period size: 106 Copynumber: 9.0 Consensus size: 106
2886161 GCATTGTTCC
* * *
2886171 GAGTCCAATATCC-TCTG-TCGTGAAGTTGAAATTGACTCTG-AA-T--GAAA-T-TTTGTTAAC
1 GAGTCCAATATCCTTC-GCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGAC
* * * * ** *
2886228 AATCAGCCGCCCCTTCGTCGTAAAGTTGGGCTTGTGTTGTCTTG
64 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * * * *
2886272 G-GTCCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTAAAATTGGGAAGTTATTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
2886336 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
2886377 GAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGAAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
2886442 CCAGCGATCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
2886483 GAGTCCAATATCCTTCGATGCGAAGTTGAAACTGGCTCTGAAATTGGGAAATTG-TTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
** * * *
2886547 CCAGCCATCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
2886588 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
2886653 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
2886694 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
2886759 CCAGCGGTCCCTTCTTCGTGAAGTTGAAATTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
2886800 GAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* * *
2886865 CCAGCGGTCCCTTCGTCATGAAGTTGAACTTACATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* ** *
2886906 GAGTCCAATATCCTTCGCTGTGAAGTTAAAATTAACTCTGAAATTAGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* * *
2886971 CCAGTGGTCCCTTCATCGTGAAGTTGAACTTGCTTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
2887012 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* * * *
2887077 CCAGCCGTCCCTTCTTCGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
2887118 GAGT
1 GAGT
2887122 GGCACGATAT
Statistics
Matches: 766, Mismatches: 74, Indels: 15
0.90 0.09 0.02
Matches are distributed among these distances:
100 29 0.04
101 6 0.01
102 1 0.00
104 3 0.00
105 101 0.13
106 626 0.82
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:2886622 original size:317 final size:317
Alignment explanation
Indices: 2886238--2887121 Score: 1376
Period size: 317 Copynumber: 2.8 Consensus size: 317
2886228 AATCAGCCGC
* ** * * *
2886238 CCCTTCGTCGTAAAGTTGGGCTTGTGTTGTCTTGGGTCCAAGATCCTTCGCTGAGAAGTTGAAAT
1 CCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
* *
2886303 TGGCTCTAAAATTGGGAAGTTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
66 TGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
* * *
2886368 CGTTGTCTGGAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGAAAATTGTT
131 CGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTT
*
2886433 TATTGACAACCAGCGATCCCTTCGTT-GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCT
196 TATTGACAACCAGCG-TCCCTTC-TTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCAT
2886497 TCGATGCGAAGTTGAAACTGGCTCTGAAATTGGGAAATTG-TTATTGACAACCAGCCAT
259 TCGATGCGAAGTTGAAACTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCCAT
* *
2886555 CCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGTTGTGAAGTTGAAAT
1 CCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
* *
2886620 TGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
66 TGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
2886685 CGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTT
131 CGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTT
*
2886750 TATTGACAACCAGCGGTCCCTTCTTCGTGAAGTTGAAATTGCGTTGTCTGGAGTCCAATATCATT
196 TATTGACAACCAGC-GTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATT
* * * **
2886815 CGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGT
260 CGATGCGAAGTTGAAACTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCCAT
* *** * *
2886873 CCCTTCGTCATGAAGTTGAACTTACATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTAAAAT
1 CCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
** * * * *
2886938 TAACTCTGAAATTAGGAAATTGTTTATTGACAACCAGTGGTCCCTTCATCGTGAAGTTGAACTTG
66 TGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
*
2887003 CTTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTT
131 CGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTT
* * *
2887068 TGTTGACAACCAGCCGTCCCTTCTTCGTGAAGTTGAACTTGTGTTGTCTCGAGT
196 TATTGACAACCAG-CGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
2887122 GGCACGATAT
Statistics
Matches: 520, Mismatches: 43, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
316 2 0.00
317 274 0.53
318 243 0.47
319 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (317 bp):
CCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
TGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
CGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTT
TATTGACAACCAGCGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATTC
GATGCGAAGTTGAAACTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCCAT
Found at i:2897186 original size:9 final size:8
Alignment explanation
Indices: 2897157--2897227 Score: 56
Period size: 8 Copynumber: 8.8 Consensus size: 8
2897147 TTTTTTGTTC
2897157 TTTCTTTT
1 TTTCTTTT
2897165 TTTCTTTT
1 TTTCTTTT
2897173 GTTTCTCTTT
1 -TTTCT-TTT
*
2897183 TTTCTTTA
1 TTTCTTTT
2897191 TTT-TTTT
1 TTTCTTTT
*
2897198 CTTCTTTT
1 TTTCTTTT
*
2897206 GCTTCTTTT
1 -TTTCTTTT
*
2897215 CTT-TTTT
1 TTTCTTTT
*
2897222 GTTCTT
1 TTTCTT
2897228 GATTGGATCT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
7 11 0.20
8 22 0.41
9 18 0.33
10 3 0.06
ACGTcount: A:0.01, C:0.15, G:0.04, T:0.79
Consensus pattern (8 bp):
TTTCTTTT
Found at i:2901611 original size:4 final size:4
Alignment explanation
Indices: 2901602--2901631 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
2901592 ATAAAAGGAA
2901602 AAAT AAAT AAAT AAAT AAAT AAAT GAAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT A
2901632 TTAATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:2901883 original size:2 final size:2
Alignment explanation
Indices: 2901876--2901906 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2901866 GATAATCACA
2901876 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2901907 ATAATACGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2902604 original size:37 final size:37
Alignment explanation
Indices: 2902511--2902612 Score: 141
Period size: 37 Copynumber: 2.8 Consensus size: 37
2902501 GTGCTTGTGG
* * * * *
2902511 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGAAAAACTCT
*
2902548 ATCCTATTTTTAGGAGTTTGAATCCTAGAAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGAAAAACTCT
*
2902585 ATCCTATTTTTAGGAGTTTGAATTCTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAG
2902613 TAGGACGAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGAAAAACTCT
Found at i:2915495 original size:239 final size:238
Alignment explanation
Indices: 2915006--2915538 Score: 748
Period size: 239 Copynumber: 2.2 Consensus size: 238
2914996 TGGACGGCCT
* * * * *
2915006 GAAAGACTTAATCATCATGTTCGAAAGACTTACT-AGTGACCCGAGGGACTTACTAAGTAAGAAA
1 GAAAGATTTAAGCATCATGCTCGAAAGACTTACTGA-TGGCCCGAAGGACTTACTAAGTAAGAAA
2915070 ATTTGAAAATAATTTTCTTACTTTTCAAGAAAAATAAACTTTTAGAAAAGATTTAATGAGAAACT
65 ATTTGAAAATAATTTTCTTACTTTTC-A-AAAAATAAACTTTTAGAAAAGATTTAATGAGAAACT
* * * * *
2915135 TTGGAAATCGCTTTCTCATTTTTCGAAAGTCATATGAAAACATCCTGCCCAAAGGTCTTATGGAT
128 TTGGAAATCGATTTCTCATTTTTAGAAAATCATATGAAAACATCCGGACCAAAGGTCTTATGGAT
* * * *
2915200 GACCCGAAGCACTTATCATCTTGCTCGAAAGACTTATAGATGAGCT
193 GACCCAAAGCACTTATCATCTTGCTCGAAAGACTTACAGATGACCC
* * *
2915246 GAAAGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGAATTACTAAGTAAGAAAC
1 GAAAGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAAA
* * *
2915311 TTTGGAAATCATTTTCTTACTTTTC-AAAAATCAA-TTTTCAGAAAAGATTTAAATGAGAAACTT
66 TTTGAAAATAATTTTCTTACTTTTCAAAAAATAAACTTTT-AGAAAAGATTT-AATGAGAAACTT
* * **
2915374 TGGAAATTGATTTCTTATTTTTTAGAAAATCATATGAAAACATCCGGACTTAAGGTCTTATGGAT
129 TGGAAATCGATTTCTCA-TTTTTAGAAAATCATATGAAAACATCCGGACCAAAGGTCTTATGGAT
* *
2915439 GGCCCAAAGGACTTATCATCTTGCTCGAAAGACTTACAGATGACCC
193 GACCCAAAGCACTTATCATCTTGCTCGAAAGACTTACAGATGACCC
*
2915485 GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACT
1 GAAAGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACT
2915539 CATCAAGAAA
Statistics
Matches: 260, Mismatches: 29, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
236 4 0.02
237 19 0.07
238 26 0.10
239 132 0.51
240 78 0.30
241 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (238 bp):
GAAAGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACTAAGTAAGAAAA
TTTGAAAATAATTTTCTTACTTTTCAAAAAATAAACTTTTAGAAAAGATTTAATGAGAAACTTTG
GAAATCGATTTCTCATTTTTAGAAAATCATATGAAAACATCCGGACCAAAGGTCTTATGGATGAC
CCAAAGCACTTATCATCTTGCTCGAAAGACTTACAGATGACCC
Found at i:2915543 original size:42 final size:41
Alignment explanation
Indices: 2915436--2915543 Score: 144
Period size: 42 Copynumber: 2.6 Consensus size: 41
2915426 AGGTCTTATG
* *
2915436 GATGGCCCAAAGGACTTATCATCTTGCTCGAAAGACTTACA
1 GATGGCCCGAAGGACTTATCATCATGCTCGAAAGACTTACA
* * * *
2915477 GATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACT
1 GATGGCCCGAAGGACTT-ATCATCATGCTCGAAAGACTTACA
2915519 GATGGCCCGAAGGACTTACTCATCA
1 GATGGCCCGAAGGACTTA-TCATCA
2915544 AGAAACACTT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
41 15 0.27
42 41 0.73
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTATCATCATGCTCGAAAGACTTACA
Found at i:2915707 original size:53 final size:53
Alignment explanation
Indices: 2915597--2915852 Score: 359
Period size: 53 Copynumber: 4.8 Consensus size: 53
2915587 TTACAATTAT
* *
2915597 CATCAAGAAACCCCTAAAAATTAGGATTAGCTTCTTTAAAAATTCATTTGAAAA
1 CATCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTT-CAAATTCATTTGAAAA
* * * * *
2915651 CATCAAGAAATCCATGAAAATTAGGCTTATCTTCCTTCAAATTCATTTGAAAA
1 CATCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTTCAAATTCATTTGAAAA
*
2915704 CATCAAGAAACCCCTAAAAATTAGGCTTTGCTTCTTTCAAATTCATTTGAAAA
1 CATCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTTCAAATTCATTTGAAAA
* * *
2915757 CATCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTTAAAATTCATTTCAACA
1 CATCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTTCAAATTCATTTGAAAA
* * * * *
2915810 TATCAAGAAACTCCTGAAAATCAGGCTTAACTTCTTTCAAATT
1 CATCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTTCAAATT
2915853 TATTATGTCA
Statistics
Matches: 179, Mismatches: 23, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
53 148 0.83
54 31 0.17
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
CATCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTTCAAATTCATTTGAAAA
Found at i:2915916 original size:49 final size:49
Alignment explanation
Indices: 2915759--2915952 Score: 185
Period size: 49 Copynumber: 3.9 Consensus size: 49
2915749 TTTGAAAACA
* * * *
2915759 TCAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTTAAAATTCATTTCAACATA
1 TCAAGAAACCTCTAAAAATCAGACTTAGCTTCTTTAAAA---ATTT-AACATG
* * * * **
2915812 TCAAGAAA-CTCCTGAAAATCAGGCTTAACTTCTTT-CAAATTTATTATG
1 TCAAGAAACCT-CTAAAAATCAGACTTAGCTTCTTTAAAAATTTAACATG
* * *
2915860 TCAAGAAACCTCTGAAAATCAAACTTAGCTTATTTAAAAATTTAACATG
1 TCAAGAAACCTCTAAAAATCAGACTTAGCTTCTTTAAAAATTTAACATG
* * *
2915909 TCAAGAAACCTCTAAAAATCAGACTTAGTTTCTTTGAAAGTTTA
1 TCAAGAAACCTCTAAAAATCAGACTTAGCTTCTTTAAAAATTTA
2915953 TTTAAAAATA
Statistics
Matches: 117, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
48 31 0.26
49 54 0.46
52 3 0.03
53 29 0.25
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (49 bp):
TCAAGAAACCTCTAAAAATCAGACTTAGCTTCTTTAAAAATTTAACATG
Found at i:2916010 original size:54 final size:54
Alignment explanation
Indices: 2915595--2916258 Score: 288
Period size: 53 Copynumber: 12.6 Consensus size: 54
2915585 GTTTACAATT
** * * *
2915595 ATCATCAAGAAACCCCT-AAAAATTAGGA-TTAGCTTCTTTAAAAATTCATTTGAAA
1 ATCATCAAGAAACTTCTGAAAAA-TA-GACTTAGTTTCTTT-AAAACTCATTTAAAA
* * * * * * *
2915650 A-CATCAAGAAA-TCCATGAAAATTAGGCTTA-TCTTCCTTCAAATTCATTTGAAA
1 ATCATCAAGAAACTTC-TGAAAAATAGACTTAGT-TTCTTTAAAACTCATTTAAAA
** * * * * * *
2915703 A-CATCAAGAAACCCCT-AAAAATTAGGCTTTGCTTCTTTCAAATTCATTTGAAA
1 ATCATCAAGAAACTTCTGAAAAA-TAGACTTAGTTTCTTTAAAACTCATTTAAAA
** * * * * *
2915756 A-CATCAAGAAACCCCT-AAAAATTAGGCTTAGCTTCTTTAAAATTCATTTCAAC
1 ATCATCAAGAAACTTCTGAAAAA-TAGACTTAGTTTCTTTAAAACTCATTTAAAA
* * ** * **
2915809 AT-ATCAAGAAACTCCTG-AAAATCAGGCTTAACTTCTTT-CAA---ATTT-ATT
1 ATCATCAAGAAACTTCTGAAAAAT-AGACTTAGTTTCTTTAAAACTCATTTAAAA
* * * * * *
2915857 AT-GTCAAGAAACCTCTG-AAAATCAAACTTAGCTTATTTAAAA---ATTT-AAC
1 ATCATCAAGAAACTTCTGAAAAAT-AGACTTAGTTTCTTTAAAACTCATTTAAAA
* * ** *
2915906 AT-GTCAAGAAACCTCT-AAAAATCAGACTTAGTTTCTTTGAAAGTTTATTTAAAA
1 ATCATCAAGAAACTTCTGAAAAAT-AGACTTAGTTTCTTT-AAAACTCATTTAAAA
* * *
2915960 ATAAT-AAAAAACTT-TCAAAAATCAGACTTAGTTTCTTTAAACACTCATTTAAAA
1 ATCATCAAGAAACTTCTGAAAAAT-AGACTTAGTTTCTTTAAA-ACTCATTTAAAA
** * * *
2916014 ATTGTCAAGAAACTTCTGAAAACTAGACTTAGTTT-TTT--AACTTATTTGAAA
1 ATCATCAAGAAACTTCTGAAAAATAGACTTAGTTTCTTTAAAACTCATTTAAAA
* *
2916065 ATCGTCAAGAAACTTATG-AAAATATGACTTAGTTTCTTTAAAAACTCATTTAAAA
1 ATCATCAAGAAACTTCTGAAAAATA-GACTTAGTTTCTTT-AAAACTCATTTAAAA
* * *
2916120 ATCATCAAGAAACTTCTGAAAAATAAACTTAATTTCTTTAAAAGCTCA--T---C
1 ATCATCAAGAAACTTCTGAAAAATAGACTTAGTTTCTTTAAAA-CTCATTTAAAA
* * ** **
2916170 AT-GTAAAGAAACCCCTG-AAAATAAGACTTAGTTTCTTTGAAAGTTCATTTAAAA
1 ATCATCAAGAAACTTCTGAAAAAT-AGACTTAGTTTCTTT-AAAACTCATTTAAAA
* * *
2916224 ATCATTAAGAAACTTC-CAAAAATCACACTTAGTTT
1 ATCATCAAGAAACTTCTGAAAAAT-AGACTTAGTTT
2916259 ATGAAAAAAA
Statistics
Matches: 497, Mismatches: 74, Indels: 76
0.77 0.11 0.12
Matches are distributed among these distances:
48 37 0.07
49 72 0.14
50 13 0.03
51 37 0.07
52 11 0.02
53 146 0.29
54 77 0.15
55 92 0.19
56 12 0.02
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.33
Consensus pattern (54 bp):
ATCATCAAGAAACTTCTGAAAAATAGACTTAGTTTCTTTAAAACTCATTTAAAA
Found at i:2916079 original size:51 final size:52
Alignment explanation
Indices: 2915859--2916258 Score: 252
Period size: 55 Copynumber: 7.6 Consensus size: 52
2915849 AATTTATTAT
* * * * * *
2915859 GTCAAGAAACCTCTGAAAATCAAACTTAGCTTATTTAAA--AATTT-AACAT-
1 GTCAAGAAACTTCTGAAAAT-AGACTTAGTTTCTTTAAACTCATTTAAAAATC
* * * * *
2915908 GTCAAGAAACCTCTAAAAATCAGACTTAGTTTCTTTGAAAGTTTATTTAAAAATA
1 GTCAAGAAACTTCTGAAAAT-AGACTTAGTTTCTTT-AAA-CTCATTTAAAAATC
* * * *
2915963 AT-AAAAAACTT-TCAAAAATCAGACTTAGTTTCTTTAAACACTCATTTAAAAATT
1 GTCAAGAAACTTCT-GAAAAT-AGACTTAGTTTCTTT-AA-ACTCATTTAAAAATC
* *
2916017 GTCAAGAAACTTCTGAAAACTAGACTTAGTTT-TTT-AACTTATTTGAAAATC
1 GTCAAGAAACTTCTGAAAA-TAGACTTAGTTTCTTTAAACTCATTTAAAAATC
*
2916068 GTCAAGAAACTTATGAAAATATGACTTAGTTTCTTTAAAAACTCATTTAAAAATC
1 GTCAAGAAACTTCTGAAAATA-GACTTAGTTTCTTT--AAACTCATTTAAAAATC
* * * *
2916123 ATCAAGAAACTTCTGAAAAATAAACTTAATTTCTTTAAAAGCTCA--T---CAT-
1 GTCAAGAAACTTCTG-AAAATAGACTTAGTTTCTTT-AAA-CTCATTTAAAAATC
* ** *
2916172 GTAAAGAAACCCCTGAAAATAAGACTTAGTTTCTTTGAAAGTTCATTTAAAAATC
1 GTCAAGAAACTTCTGAAAAT-AGACTTAGTTTCTTT-AAA-CTCATTTAAAAATC
* * ** *
2916227 ATTAAGAAACTTCCAAAAATCACACTTAGTTT
1 GTCAAGAAACTTCTGAAAAT-AGACTTAGTTT
2916259 ATGAAAAAAA
Statistics
Matches: 282, Mismatches: 44, Indels: 44
0.76 0.12 0.12
Matches are distributed among these distances:
48 5 0.02
49 63 0.22
50 7 0.02
51 41 0.15
52 4 0.01
53 6 0.02
54 56 0.20
55 92 0.33
56 8 0.03
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.34
Consensus pattern (52 bp):
GTCAAGAAACTTCTGAAAATAGACTTAGTTTCTTTAAACTCATTTAAAAATC
Found at i:2916133 original size:55 final size:55
Alignment explanation
Indices: 2915909--2916258 Score: 273
Period size: 55 Copynumber: 6.6 Consensus size: 55
2915899 ATTTAACATG
* * ** * *
2915909 TCAAGAAACCTCT-AAAAATCAGACTTAGTTTCTTTGAAAGTTTATTTAAAAATAA
1 TCAAGAAACTTCTGAAAAAT-AGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
* * * **
2915964 T-AAAAAACTT-TCAAAAATCAGACTTAGTTTCTTTAAACACTCATTTAAAAATTG
1 TCAAGAAACTTCTGAAAAAT-AGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
* * * *
2916018 TCAAGAAACTTCTGAAAACTAGACTTAGTTT-TTT---AACTTATTTGAAAATCG
1 TCAAGAAACTTCTGAAAAATAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
*
2916069 TCAAGAAACTTATG-AAAATATGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
1 TCAAGAAACTTCTGAAAAATA-GACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
* * * * *
2916124 TCAAGAAACTTCTGAAAAATAAACTTAATTTCTTTAAAAGCTCA--T---CAT-G
1 TCAAGAAACTTCTGAAAAATAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
* ** * **
2916173 TAAAGAAACCCCTG-AAAATAAGACTTAGTTTCTTTGAAAGTTCATTTAAAAATCA
1 TCAAGAAACTTCTGAAAAAT-AGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
* * *
2916228 TTAAGAAACTTC-CAAAAATCACACTTAGTTT
1 TCAAGAAACTTCTGAAAAAT-AGACTTAGTTT
2916259 ATGAAAAAAA
Statistics
Matches: 236, Mismatches: 42, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
48 5 0.02
49 31 0.13
50 7 0.03
51 37 0.16
52 3 0.01
53 2 0.01
54 48 0.20
55 91 0.39
56 12 0.05
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.34
Consensus pattern (55 bp):
TCAAGAAACTTCTGAAAAATAGACTTAGTTTCTTTAAAAACTCATTTAAAAATCA
Found at i:2917531 original size:28 final size:28
Alignment explanation
Indices: 2917493--2917567 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
2917483 AGGATTCCTT
*
2917493 GGGAAGGTAATGTATTTCAAGTTAATTTG
1 GGGAA-GTAATGTGTTTCAAGTTAATTTG
**
2917522 GGGAAGTAATGTGTTTCTCGTTAATTTG
1 GGGAAGTAATGTGTTTCAAGTTAATTTG
*
2917550 GGGAGGTAATGTGTTTCA
1 GGGAAGTAATGTGTTTCA
2917568 GGTTGGCTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 36 0.88
29 5 0.12
ACGTcount: A:0.25, C:0.05, G:0.31, T:0.39
Consensus pattern (28 bp):
GGGAAGTAATGTGTTTCAAGTTAATTTG
Found at i:2918308 original size:6 final size:6
Alignment explanation
Indices: 2918297--2918407 Score: 64
Period size: 6 Copynumber: 17.7 Consensus size: 6
2918287 TCTTGAAGTA
* * * * *
2918297 TTTTTC TTTTTC TTTTCTC TCTTTCTC TTTCTC TTTCTC TCTCTC TCTTTC
1 TTTTTC TTTTTC TTTT-TC T-TTT-TC TTTTTC TTTTTC TTTTTC TTTTTC
* * * *
2918348 TTTCTC TTTTT- TTCTTTC TTTAT- TTTCTC TCTTTTC TTTTCTTT TTTTTC
1 TTTTTC TTTTTC TT-TTTC TTTTTC TTTTTC T-TTTTC -TTT-TTC TTTTTC
2918398 TTTTTC TTTT
1 TTTTTC TTTT
2918408 ATTATATCTC
Statistics
Matches: 86, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
5 6 0.07
6 54 0.63
7 16 0.19
8 10 0.12
ACGTcount: A:0.01, C:0.24, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTTTC
Found at i:2918329 original size:14 final size:14
Alignment explanation
Indices: 2918301--2918386 Score: 67
Period size: 14 Copynumber: 6.4 Consensus size: 14
2918291 GAAGTATTTT
*
2918301 TCTTTTTCT-TTTC
1 TCTTTCTCTCTTTC
2918314 TCTCTT-TCTCTTTC
1 TCT-TTCTCTCTTTC
*
2918328 TCTTTCTCTCTCTC
1 TCTTTCTCTCTTTC
2918342 TCTTTCTTTCTCTTT-
1 TCTTTC--TCTCTTTC
* *
2918357 T-TTTCTTTCTTTA
1 TCTTTCTCTCTTTC
2918370 T-TTTCTCTCTTT-
1 TCTTTCTCTCTTTC
2918382 TCTTT
1 TCTTT
2918387 TCTTTTTTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 14
0.77 0.05 0.17
Matches are distributed among these distances:
12 7 0.11
13 22 0.35
14 26 0.42
15 1 0.02
16 6 0.10
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (14 bp):
TCTTTCTCTCTTTC
Found at i:2918382 original size:23 final size:23
Alignment explanation
Indices: 2918348--2918407 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
2918338 TCTCTCTTTC
*
2918348 TTTCTCT-TTTTTTCTTTCTTTAT
1 TTTCTCTCTTTTCT-TTTCTTTAT
2918371 TTTCTCTCTTTTCTTTTCTTT-T
1 TTTCTCTCTTTTCTTTTCTTTAT
2918393 TTT-TCT-TTTTCTTTT
1 TTTCTCTCTTTTCTTTT
2918408 ATTATATCTC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
20 9 0.26
21 3 0.09
22 4 0.11
23 14 0.40
24 5 0.14
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (23 bp):
TTTCTCTCTTTTCTTTTCTTTAT
Found at i:2918387 original size:14 final size:14
Alignment explanation
Indices: 2918304--2918401 Score: 65
Period size: 14 Copynumber: 6.6 Consensus size: 14
2918294 GTATTTTTCT
2918304 TTTTCTTTTCTCTC
1 TTTTCTTTTCTCTC
2918318 TTTCTCTTTCTCTTTCTC
1 TTT-TCTTT-TC--TCTC
* *
2918336 TCTCTCTCTTTCTTTC
1 T-TTTCT-TTTCTCTC
*
2918352 TCTTT-TTTTCTTTC
1 T-TTTCTTTTCTCTC
*
2918366 -TTTATTTTCTCTC
1 TTTTCTTTTCTCTC
* *
2918379 TTTTCTTTTCTTTT
1 TTTTCTTTTCTCTC
2918393 TTTTCTTTT
1 TTTTCTTTT
2918402 TCTTTTATTA
Statistics
Matches: 69, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
12 3 0.04
13 8 0.12
14 30 0.43
15 6 0.09
16 9 0.13
18 10 0.14
19 3 0.04
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTCTTTTCTCTC
Found at i:2918422 original size:37 final size:35
Alignment explanation
Indices: 2918340--2918424 Score: 84
Period size: 37 Copynumber: 2.3 Consensus size: 35
2918330 TTTCTCTCTC
* *
2918340 TCTCTT-TCTTTCTCTTTTTTTCTTTCTTTATTTTC
1 TCTCTTCT-TTTCTCTTTTTTTCTTTCTTTATTATA
2918375 TCTCTTTTCTTTTCT-TTTTTTTCTTTTTCTTTTATTATA
1 TCTC--TTCTTTTCTCTTTTTTTC--TTTC-TTTATTATA
2918414 TCTCTTCTTTT
1 TCTCTTCTTTT
2918425 TTTCTTTATG
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
35 4 0.10
36 8 0.19
37 14 0.33
38 5 0.12
39 11 0.26
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (35 bp):
TCTCTTCTTTTCTCTTTTTTTCTTTCTTTATTATA
Found at i:2918660 original size:2 final size:2
Alignment explanation
Indices: 2918653--2918685 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2918643 GGACAACAAG
2918653 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2918686 AAGGATAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2920163 original size:46 final size:46
Alignment explanation
Indices: 2920095--2920268 Score: 269
Period size: 46 Copynumber: 3.8 Consensus size: 46
2920085 CAATTATGTA
**
2920095 ATTTT-ATTTGTGGCATATTTTCATGTAAATTATGCACTGATATAC
1 ATTTTCATTTGTGGCATCCTTTCATGTAAATTATGCACTGATATAC
* *
2920140 ATTTTCAGTTGTGACATCCTTTCATGTAAATTATGCACTGATATAC
1 ATTTTCATTTGTGGCATCCTTTCATGTAAATTATGCACTGATATAC
2920186 ATTTTCATTTGTGGCATCCTTTCATGTAAATTATGCACTGATATAC
1 ATTTTCATTTGTGGCATCCTTTCATGTAAATTATGCACTGATATAC
* * **
2920232 ATTTTCATTTGTGGTATCCCTTCATGCCAATTATGCA
1 ATTTTCATTTGTGGCATCCTTTCATGTAAATTATGCA
2920269 TTGTTTTTCA
Statistics
Matches: 118, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 5 0.04
46 113 0.96
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (46 bp):
ATTTTCATTTGTGGCATCCTTTCATGTAAATTATGCACTGATATAC
Found at i:2920664 original size:54 final size:54
Alignment explanation
Indices: 2920564--2921106 Score: 862
Period size: 54 Copynumber: 10.1 Consensus size: 54
2920554 TAGTGCCAAT
* * *
2920564 AATTCATAAACTTATTATAAATTACGTGT-GGTTGCACACACAGTGCCAATACAGA
1 AATTCATAAACTCATTATGAATTTC-T-TAGGTTGCACACACAGTGCCAATACAGA
*
2920619 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACAGA
1 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAGA
2920673 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATAC-GAA
1 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAG-A
* *
2920727 AATTCATAAACTCATTATGAATTTCTTAAGTTGCACACACAGTGCCAATACGGA
1 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAGA
* * *
2920781 AATTCATAAACTCATAATGAATTTCTTAGGTTGCACACATAGTGCCAATATAGA
1 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAGA
2920835 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAGA
1 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAGA
*
2920889 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACAGA
1 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAGA
*
2920943 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCCAATAC-GAA
1 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAG-A
* * *
2920997 AATTCATAAACTCATTATGAATTTCTTAGGTTACACGCACAATGCCAATAC-GAA
1 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAG-A
* *
2921051 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCC-ATTCAGA
1 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAGA
2921104 AAT
1 AAT
2921107 CACAATAAAT
Statistics
Matches: 459, Mismatches: 24, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
53 10 0.02
54 426 0.93
55 23 0.05
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (54 bp):
AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACACAGTGCCAATACAGA
Found at i:2924079 original size:10 final size:11
Alignment explanation
Indices: 2924066--2924097 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
2924056 ATACAAGGAT
2924066 ATAA-AATAAA
1 ATAATAATAAA
2924076 ATAATAAT-AA
1 ATAATAATAAA
2924086 ATAATAATAAA
1 ATAATAATAAA
2924097 A
1 A
2924098 GAATGACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 14 0.70
11 6 0.30
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
ATAATAATAAA
Found at i:2926459 original size:3 final size:3
Alignment explanation
Indices: 2926451--2926515 Score: 76
Period size: 3 Copynumber: 21.0 Consensus size: 3
2926441 TTAAAATTTT
* * *
2926451 TTA TTA TTA TTA TAA TTA TAA TTA TTA TTA TTA TTA TTA TTA ATA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
*
2926500 TTA TTTA TTA ATA TTA
1 TTA -TTA TTA TTA TTA
2926516 CAAAGCCCAA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
3 46 0.88
4 6 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:2928632 original size:19 final size:18
Alignment explanation
Indices: 2928606--2928641 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
2928596 TTTTATATAC
2928606 TTATTATTTTCATATTAT
1 TTATTATTTTCATATTAT
*
2928624 TTATATATTTTCTTATTA
1 TTAT-TATTTTCATATTA
2928642 ATATTTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (18 bp):
TTATTATTTTCATATTAT
Found at i:2931958 original size:15 final size:15
Alignment explanation
Indices: 2931938--2931969 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2931928 ATCAATACCT
2931938 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
2931953 TTTTGCATACATTCA
1 TTTTGCATACATGCA
2931968 TT
1 TT
2931970 ATTCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:2939292 original size:13 final size:12
Alignment explanation
Indices: 2939278--2939366 Score: 79
Period size: 13 Copynumber: 6.8 Consensus size: 12
2939268 ATGCTTGAAG
2939278 AAAAAAAAAGAA
1 AAAAAAAAAGAA
* *
2939290 GAAAGAAAAGGAAA
1 -AAAAAAAAAG-AA
2939304 AAAGAAAAAAGAA
1 AAA-AAAAAAGAA
*
2939317 AAAGAAAAAGAGA
1 AAAAAAAAAGA-A
*
2939330 AAAAAGAAAGAA
1 AAAAAAAAAGAA
2939342 AAAATAGAAAAGAA
1 AAAA-A-AAAAGAA
2939356 AAAAGAAAAAG
1 AAAA-AAAAAG
2939367 GGGGGTCAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
12 12 0.19
13 32 0.52
14 18 0.29
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:2939296 original size:7 final size:6
Alignment explanation
Indices: 2939278--2939366 Score: 74
Period size: 7 Copynumber: 13.8 Consensus size: 6
2939268 ATGCTTGAAG
*
2939278 AAAA-A AAAAGA AGAAAGA AAAGGAA AAAAGAA AAAAGA AAAAGA AAAAGA
1 AAAAGA AAAAGA A-AAAGA AAAAG-A AAAAG-A AAAAGA AAAAGA AAAAGA
*
2939328 GAAAA-A AGAAAGAA AAAATA GAAAAGAA AAAAGA AAAAG
1 -AAAAGA A-AAAG-A AAAAGA -AAAAG-A AAAAGA AAAAG
2939367 GGGGGTCAAG
Statistics
Matches: 71, Mismatches: 4, Indels: 17
0.77 0.04 0.18
Matches are distributed among these distances:
5 5 0.07
6 29 0.41
7 34 0.48
8 3 0.04
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (6 bp):
AAAAGA
Found at i:2939306 original size:20 final size:20
Alignment explanation
Indices: 2939281--2939365 Score: 102
Period size: 20 Copynumber: 4.2 Consensus size: 20
2939271 CTTGAAGAAA
* *
2939281 AAAAAAGAAGAAAGAAAAGG
1 AAAAAAGAAAAAAGAAAAAG
2939301 AAAAAAGAAAAAAGAAAAAG
1 AAAAAAGAAAAAAGAAAAAG
2939321 AAAAAGAGAAAAAAG--AAAG
1 AAAAA-AGAAAAAAGAAAAAG
* *
2939340 AAAAAATAGAAAAGAAAAAAG
1 AAAAAAGAAAAAAG-AAAAAG
2939361 AAAAA
1 AAAAA
2939366 GGGGGGTCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
18 7 0.12
19 9 0.16
20 23 0.40
21 18 0.32
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (20 bp):
AAAAAAGAAAAAAGAAAAAG
Found at i:2940663 original size:83 final size:83
Alignment explanation
Indices: 2940524--2940834 Score: 478
Period size: 83 Copynumber: 3.6 Consensus size: 83
2940514 AACAAATGCC
2940524 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAGTT
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAGTT
2940589 ATTGAATTTGGAAGAGTA
66 ATTGAATTTGGAAGAGTA
*
2940607 ATGTGCTCATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAGTT
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAGTT
2940672 ATTGAATTTGGAAGAGTA
66 ATTGAATTTGGAAGAGTA
*
2940690 ATGTGCTCATAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACA
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG--T-----A-A
* *
2940755 GAACCAGTTATTGAATTTGGAAGAGGA
58 -AATCAGTTATTGAATTTGGAAGAGTA
* * *
2940782 ATGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTCTCTGATTTGGTTTG
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
2940835 ATATAAAACC
Statistics
Matches: 210, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
83 134 0.64
85 1 0.00
90 1 0.00
91 1 0.00
92 73 0.35
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (83 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAGTT
ATTGAATTTGGAAGAGTA
Found at i:2940816 original size:175 final size:166
Alignment explanation
Indices: 2940524--2940834 Score: 478
Period size: 175 Copynumber: 1.8 Consensus size: 166
2940514 AACAAATGCC
* *
2940524 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAGTT
1 ATGTGCTCATAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAGTT
* *
2940589 ATTGAATTTGGAAGAGTAATGTGCTCATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCT
66 ATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCT
2940654 GGTTTGGTAAAATCAGTTATTGAATTTGGAAGAGTA
131 GGTTTGGTAAAATCAGTTATTGAATTTGGAAGAGTA
2940690 ATGTGCTCATAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACA
1 ATGTGCTCATAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTTGG--T-----A-A
*
2940755 GAACCAGTTATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTT
58 -AACCAGTTATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAATGTTCTTTGAGTT
* *
2940820 CTCTGATTTGGTTTG
122 ATCTGATCTGGTTTG
2940835 ATATAAAACC
Statistics
Matches: 129, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
166 53 0.41
168 1 0.01
173 1 0.01
174 1 0.01
175 73 0.57
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (166 bp):
ATGTGCTCATAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAGTT
ATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCT
GGTTTGGTAAAATCAGTTATTGAATTTGGAAGAGTA
Found at i:2940849 original size:92 final size:92
Alignment explanation
Indices: 2940667--2940852 Score: 293
Period size: 92 Copynumber: 2.0 Consensus size: 92
2940657 TTGGTAAAAT
* *
2940667 CAGTTATTGAATTTGGAAGAGTAATGTGCTCATAGCATCTTCTGGAAGTATTCTTTGAGTTATCT
1 CAGTTATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTATTCTTTGAGTTATCT
* *
2940732 GATCTGGTTTGGTATGAACCACAGAAC
66 GATCTGGTTTGATATAAACCACAGAAC
* *
2940759 CAGTTATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTCTCT
1 CAGTTATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTATTCTTTGAGTTATCT
*
2940824 GATTTGGTTTGATATAAAACC-CAGAAC
66 GATCTGGTTTGATAT-AAACCACAGAAC
2940851 CA
1 CA
2940853 ATCATTGGAA
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
92 82 0.95
93 4 0.05
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (92 bp):
CAGTTATTGAATTTGGAAGAGGAATGTGCTAATAGCATCTTCTGGAAGTATTCTTTGAGTTATCT
GATCTGGTTTGATATAAACCACAGAAC
Found at i:2941770 original size:116 final size:115
Alignment explanation
Indices: 2941559--2942244 Score: 879
Period size: 116 Copynumber: 6.0 Consensus size: 115
2941549 TAGCAAAGAT
* * *
2941559 TCAAATCCATCATTTGATGGATCAGTATTTCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATC
1 TCAAATCCATCACTTGATGGATCAGCATTTCCAGGTAGAGTTCATAATGAGAAGAACTC-TTATC
* *
2941624 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
65 TGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
** * * * ** * *
2941675 TTGAATTCATCATTTGATGGATTAAAATTTCCAGGTATAGTTCATAATGAGAAGAACTCATTATT
1 TCAAATCCATCACTTGATGGATCAGCATTTCCAGGTAGAGTTCATAATGAGAAGAACTC-TTATC
* *
2941740 TGAAGGAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTATGC
65 TGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * * *
2941791 TCAAATCCATCACTTGATGGATTAGCTTTTCCAGTTTGAGTTCATAATGAGAAGAACTC--ATCT
1 TCAAATCCATCACTTGATGGATCAGCATTTCCAGGTAGAGTTCATAATGAGAAGAACTCTTATCT
2941854 GAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
66 GAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* *
2941904 TCAAATCCATCATTTGATGGATCAGCTTTTCCAGGTAGAGTTCATAATGAGAAGAACTCATTA-C
1 TCAAATCCATCACTTGATGGATCAGCATTTCCAGGTAGAGTTCATAATGAGAAGAACTC-TTATC
* * *
2941968 TTGAAGGAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTTAACCTTATGC
65 -TGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * * *
2942020 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAA-T-TCATCT
1 TCAAATCCATCACTTGATGGATCAGCATTTCCAGGTAGAGTTCATAATGAGAAGAACTCTTATCT
* * *
2942083 GAAGAAGGAAGAA-AAAGTTCATAATGAGAAGAACTTGTTTAACCTTTTGT
66 GAAGAAGGAAGAAGAAA-TTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * * * *
2942133 TCAAATTCATCACTTGATGGATCAACATTTCCAGAG-AAAGTTCATAATAAGAAGAA-T-TTATT
1 TCAAATCCATCACTTGATGGATCAGCATTTCCAG-GTAGAGTTCATAATGAGAAGAACTCTTATC
* * **
2942195 TGAAG-AGGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTGC
65 TGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
2942245 ATAATTCTAT
Statistics
Matches: 506, Mismatches: 56, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
112 40 0.08
113 210 0.42
114 1 0.00
115 2 0.00
116 253 0.50
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (115 bp):
TCAAATCCATCACTTGATGGATCAGCATTTCCAGGTAGAGTTCATAATGAGAAGAACTCTTATCT
GAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
Found at i:2941963 original size:229 final size:229
Alignment explanation
Indices: 2941559--2942240 Score: 1018
Period size: 229 Copynumber: 3.0 Consensus size: 229
2941549 TAGCAAAGAT
* *
2941559 TCAAATCCATCATTTGATGGATCAG-TATTTCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TCAAATCCATCACTTGATGGATCAGCT-TTTCCAGTTAGAGTTCATAATGAGAAGAA--C-TCAT
* **
2941623 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCAT
62 CTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTCAAATTCATCAT
* * *
2941688 TTGATGGATTAAAATTTCCAGGTATAGTTCATAATGAGAAGAACTCATTATTTGAAGGAGGAAGA
127 TTGATGGATCAACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATTATTTGAAGGAGGAAGA
2941753 AGAAATTCATAATGAGAAGAATTTGTTCAACCTTATGC
192 AGAAATTCATAATGAGAAGAATTTGTTCAACCTTATGC
* *
2941791 TCAAATCCATCACTTGATGGATTAGCTTTTCCAGTTTGAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGA
* *
2941856 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCATTTGA
66 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTCAAATTCATCATTTGA
* * * *
2941921 TGGATCAGCTTTTCCAGGTAGAGTTCATAATGAGAAGAACTCATTACTTGAAGGAGGAAGAAGAA
131 TGGATCAACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATTATTTGAAGGAGGAAGAAGAA
*
2941986 ATTCATAATGAGAAGAATTTGTTTAACCTTATGC
196 ATTCATAATGAGAAGAATTTGTTCAACCTTATGC
* *
2942020 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAATTCATCTGA
1 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGA
* * *
2942085 AGAAGGAAGAA-AAAGTTCATAATGAGAAGAACTTGTTTAACCTTTTGTTCAAATTCATCACTTG
66 AGAAGGAAGAAGAAA-TTCATAATGAGAAGAATTTGTTCAACCTTTTGTTCAAATTCATCATTTG
*
2942149 ATGGATCAACATTTCCAGAG-AAAGTTCATAATAAGAAGAA-T--TTATTTGAA-GAGGAAGAAG
130 ATGGATCAACATTTCCAG-GTAAAGTTCATAATGAGAAGAACTCATTATTTGAAGGAGGAAGAAG
* * **
2942209 AAGTTCACAATGAGAAGAGCTTGTTCAACCTT
194 AAATTCATAATGAGAAGAATTTGTTCAACCTT
2942241 TTGCATAATT
Statistics
Matches: 413, Mismatches: 34, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
225 37 0.09
226 8 0.02
228 4 0.01
229 311 0.75
230 2 0.00
232 50 0.12
233 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (229 bp):
TCAAATCCATCACTTGATGGATCAGCTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTCAAATTCATCATTTGA
TGGATCAACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATTATTTGAAGGAGGAAGAAGAA
ATTCATAATGAGAAGAATTTGTTCAACCTTATGC
Done.