Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007909.1 Hibiscus syriacus cultivar Beakdansim tig00110303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3382237
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 17
Found at i:596834 original size:13 final size:13
Alignment explanation
Indices: 596805--596839 Score: 63
Period size: 12 Copynumber: 2.8 Consensus size: 13
596795 GGGGAGTAAT
596805 TTTTCAAAAATGA
1 TTTTCAAAAATGA
596818 -TTTCAAAAATGA
1 TTTTCAAAAATGA
596830 TTTTCAAAAA
1 TTTTCAAAAA
596840 GAAAATCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.37
Consensus pattern (13 bp):
TTTTCAAAAATGA
Found at i:603243 original size:3 final size:3
Alignment explanation
Indices: 603235--603317 Score: 148
Period size: 3 Copynumber: 27.7 Consensus size: 3
603225 AAAATATACG
**
603235 ATT ATT ATT ATT ATT AGA ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
603283 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
603318 CTTCCATTTT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:620327 original size:21 final size:21
Alignment explanation
Indices: 620212--620327 Score: 60
Period size: 21 Copynumber: 5.6 Consensus size: 21
620202 TGACCAACAA
**
620212 AATCGCAACGCGA-TCCCCAG
1 AATCGCAACGCGATTTTCCAG
** * *
620232 AATCGCAAATC-AGTTTCCAA
1 AATCGCAACGCGATTTTCCAG
* *
620252 AATCGCAACGCGATTCTT-GAC
1 AATCGCAACGCGATT-TTCCAG
* ** *
620273 AATCGCAATGCGATAGTACA-
1 AATCGCAACGCGATTTTCCAG
**
620293 AATTCGCATTGCGATTTTCCAG
1 AA-TCGCAACGCGATTTTCCAG
620315 AATCGCAACGCGA
1 AATCGCAACGCGA
620328 ATATGAAAAT
Statistics
Matches: 70, Mismatches: 20, Indels: 11
0.69 0.20 0.11
Matches are distributed among these distances:
19 1 0.01
20 25 0.36
21 40 0.57
22 4 0.06
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.22
Consensus pattern (21 bp):
AATCGCAACGCGATTTTCCAG
Found at i:620340 original size:20 final size:20
Alignment explanation
Indices: 620315--620488 Score: 163
Period size: 20 Copynumber: 8.7 Consensus size: 20
620305 GATTTTCCAG
* *
620315 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATACGTA
* * *
620335 AATCGCAACGTGAACACATA
1 AATCGCAACGCGAATACGTA
* *
620355 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
* *
620375 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
* *
620395 AATCGCAATGC-ATATCCGTA
1 AATCGCAACGCGA-ATACGTA
* * *
620415 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
620435 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATACGT-A
* *
620456 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
620476 AATCGCAACGCGA
1 AATCGCAACGCGA
620489 TTTTTAAAGC
Statistics
Matches: 128, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
20 111 0.87
21 17 0.13
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.18
Consensus pattern (20 bp):
AATCGCAACGCGAATACGTA
Found at i:620397 original size:40 final size:40
Alignment explanation
Indices: 620353--620487 Score: 200
Period size: 40 Copynumber: 3.4 Consensus size: 40
620343 CGTGAACACA
620353 TAAATCGCAACGCGTATCCGTAAATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCGTAAATCGCAACGCGTATCCG
* * *
620393 TAAATCGCAATGCATATCCGTATATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCGTAAATCGCAACGCGTATCCG
* *
620433 TAAATCGCAACGAC-AATACGTAAAATCGCAACGCGTATCCG
1 TAAATCGCAACG-CGTATCCGT-AAATCGCAACGCGTATCCG
620474 TAAATCGCAACGCG
1 TAAATCGCAACGCG
620488 ATTTTTAAAG
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
40 54 0.64
41 31 0.36
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (40 bp):
TAAATCGCAACGCGTATCCGTAAATCGCAACGCGTATCCG
Found at i:620398 original size:60 final size:60
Alignment explanation
Indices: 620315--620487 Score: 192
Period size: 60 Copynumber: 2.9 Consensus size: 60
620305 GATTTTCCAG
* * *
620315 AATCGCAACGCGAATATGAAAATCGCAACGTG-AACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTAAATCGCAACGTGCAAC-CGTAAATCGCAACGCGTATCCGTA
* * *
620375 AATCGCAACGCGTATCCGTAAATCGCAA--TGCATATCCGTATATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTAAATCGCAACGTGCA-A-CCGTAAATCGCAACGCGTATCCGTA
* * *
620435 AATCGCAACGAC-AATACGTAAAATCGCAACGCGTATCCGTAAATCGCAACGCG
1 AATCGCAACG-CGAATACGT-AAATCGCAACGTGCAACCGTAAATCGCAACGCG
620488 ATTTTTAAAG
Statistics
Matches: 94, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
58 2 0.02
59 1 0.01
60 62 0.66
61 27 0.29
63 2 0.02
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.18
Consensus pattern (60 bp):
AATCGCAACGCGAATACGTAAATCGCAACGTGCAACCGTAAATCGCAACGCGTATCCGTA
Found at i:620906 original size:33 final size:33
Alignment explanation
Indices: 620867--620937 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
620857 TTCACTTAGA
620867 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
620900 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
620933 TTTCA
1 TTTCA
620938 AGTTAGTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.11, C:0.24, G:0.17, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:621043 original size:21 final size:20
Alignment explanation
Indices: 621017--621123 Score: 93
Period size: 21 Copynumber: 5.5 Consensus size: 20
621007 TGCAGAAGAG
621017 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-AAATGAAAA
* **
621038 TCGCAACGTGAAAATGACTA
1 TCGCAACGAGAAAATGAAAA
621058 TCTGCAACGAGAAAAATGAAAA
1 TC-GCAACGAG-AAAATGAAAA
*
621080 TCACAACGAG---A-G--AA
1 TCGCAACGAGAAAATGAAAA
*
621094 TCGCAACGCG-AAATGAAAA
1 TCGCAACGAGAAAATGAAAA
621113 TCGCAACGAGA
1 TCGCAACGAGA
621124 GAATCGCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 17
0.72 0.11 0.18
Matches are distributed among these distances:
14 10 0.15
16 2 0.03
17 2 0.03
19 11 0.16
20 9 0.13
21 24 0.35
22 10 0.15
ACGTcount: A:0.48, C:0.19, G:0.21, T:0.13
Consensus pattern (20 bp):
TCGCAACGAGAAAATGAAAA
Found at i:621100 original size:14 final size:14
Alignment explanation
Indices: 621078--621134 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
621068 GAAAAATGAA
*
621078 AATCACAACGAGAG
1 AATCGCAACGAGAG
*
621092 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
621111 AATCGCAACGAGAG
1 AATCGCAACGAGAG
621125 AATCGCAACG
1 AATCGCAACG
621135 CGAAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.46, C:0.23, G:0.23, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:621109 original size:33 final size:33
Alignment explanation
Indices: 621071--621139 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
621061 GCAACGAGAA
621071 AAATGAAAATCACAACGAGAGAATCGCAACGCG
1 AAATGAAAATCACAACGAGAGAATCGCAACGCG
*
621104 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1 AAATGAAAATCACAACGAGAGAATCGCAACGCG
621137 AAA
1 AAA
621140 CCAAAATCGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.49, C:0.20, G:0.22, T:0.09
Consensus pattern (33 bp):
AAATGAAAATCACAACGAGAGAATCGCAACGCG
Found at i:621146 original size:33 final size:33
Alignment explanation
Indices: 621076--621150 Score: 123
Period size: 33 Copynumber: 2.3 Consensus size: 33
621066 GAGAAAAATG
* **
621076 AAAATCACAACGAGAGAATCGCAACGCGAAATG
1 AAAATCGCAACGAGAGAATCGCAACGCGAAACC
621109 AAAATCGCAACGAGAGAATCGCAACGCGAAACC
1 AAAATCGCAACGAGAGAATCGCAACGCGAAACC
621142 AAAATCGCA
1 AAAATCGCA
621151 TTGCGATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.48, C:0.24, G:0.20, T:0.08
Consensus pattern (33 bp):
AAAATCGCAACGAGAGAATCGCAACGCGAAACC
Found at i:623059 original size:93 final size:93
Alignment explanation
Indices: 622900--623215 Score: 614
Period size: 93 Copynumber: 3.4 Consensus size: 93
622890 TAGATTGCTT
*
622900 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
622965 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
622993 AGTAAATTTGTTCGGTTGCTACCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
623058 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
623086 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
623151 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
623179 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
623216 AATACCCTGA
Statistics
Matches: 220, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 220 1.00
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.45
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:623371 original size:33 final size:34
Alignment explanation
Indices: 623313--623380 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
623303 TAGTTTACTT
* *
623313 TCGCAACACGAAACTTAAAATCGCAACGAGAGAA
1 TCGCAACACGAAACTGAAAATCGCAACGACAGAA
*
623347 TCGCAACGCGAAA-TGAAAATCGCAACGACAGAA
1 TCGCAACACGAAACTGAAAATCGCAACGACAGAA
623380 T
1 T
623381 TATTGCTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 19 0.61
34 12 0.39
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.12
Consensus pattern (34 bp):
TCGCAACACGAAACTGAAAATCGCAACGACAGAA
Found at i:623519 original size:14 final size:14
Alignment explanation
Indices: 623500--623535 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
623490 ATTGTTTAAT
623500 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
623514 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
623528 TGATTTGT
1 TGATTTGT
623536 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:623650 original size:19 final size:19
Alignment explanation
Indices: 623626--623713 Score: 123
Period size: 19 Copynumber: 4.8 Consensus size: 19
623616 GCATTATGTT
623626 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAATGC
623645 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAATGC
*
623662 G--A-GAGAATCGCAATGC
1 GAAATGAAAATCGCAATGC
623678 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAATGC
623697 GGAAATGAAAATCGCAA
1 -GAAATGAAAATCGCAA
623714 CGAGAGAATC
Statistics
Matches: 61, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
14 10 0.16
15 1 0.02
16 2 0.03
17 2 0.03
18 1 0.02
19 29 0.48
20 16 0.26
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.14
Consensus pattern (19 bp):
GAAATGAAAATCGCAATGC
Found at i:623745 original size:53 final size:53
Alignment explanation
Indices: 623626--623732 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
623616 GCATTATGTT
623626 GAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
623678 GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
623731 GA
1 GA
623733 TTTTCTTTTC
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 19 0.35
53 35 0.65
ACGTcount: A:0.46, C:0.17, G:0.24, T:0.13
Consensus pattern (53 bp):
GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
Found at i:623750 original size:19 final size:18
Alignment explanation
Indices: 623722--623945 Score: 192
Period size: 19 Copynumber: 12.7 Consensus size: 18
623712 AACGAGAGAA
*
623722 TCGCAATGCGATTTTCTTT
1 TCGCATTGCGATTTTC-TT
623741 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTC-TT
*
623760 TCCGCATTGCGA--TTCTC
1 T-CGCATTGCGATTTTCTT
623777 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTC-TT
623794 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTC-TT
*
623813 TCGCATTGCGA--TTCTC
1 TCGCATTGCGATTTTCTT
623829 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTC-TT
623846 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTC-TT
*
623865 TCCGCATTGCGA--TTCTC
1 T-CGCATTGCGATTTTCTT
623882 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTC-TT
623899 TCCGCATTGCGATTTTC-T
1 T-CGCATTGCGATTTTCTT
*
623917 T-G--TTGGGATTTTCATT
1 TCGCATTGCGATTTTC-TT
623933 TCGCATTGCGATT
1 TCGCATTGCGATT
623946 CTCTCGTTGC
Statistics
Matches: 172, Mismatches: 10, Indels: 46
0.75 0.04 0.20
Matches are distributed among these distances:
14 28 0.16
16 20 0.12
17 18 0.10
18 10 0.06
19 65 0.38
20 31 0.18
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.46
Consensus pattern (18 bp):
TCGCATTGCGATTTTCTT
Found at i:623804 original size:33 final size:34
Alignment explanation
Indices: 623746--623978 Score: 237
Period size: 34 Copynumber: 6.8 Consensus size: 34
623736 TCTTTTCGCA
623746 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
*
623780 TTGCGATTTTCATTT-CGCATTGCGATT-T-TCA
1 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
* * *
623811 TTTCGCA-TTGCGATTCTCTCG--TTGCGATTTTCATTTCG
1 TTGCG-ATTTTC-ATT-TC-CGCATTGCGA--TTC-TCTCG
623849 CATTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
1 --TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
* *
623885 TTGCGATTTTCATTTCCGCATTGCGATTTTCTTG
1 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
*
623919 TTGGGATTTTCATTT-CGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
* * **
623952 TTGCGATTGTAATTTCCGTGTTGCGAT
1 TTGCGATTTTCATTTCCGCATTGCGAT
623979 AGTCAAATGC
Statistics
Matches: 166, Mismatches: 17, Indels: 32
0.77 0.08 0.15
Matches are distributed among these distances:
31 9 0.05
32 5 0.03
33 47 0.28
34 70 0.42
35 4 0.02
36 4 0.02
37 6 0.04
38 4 0.02
39 10 0.06
40 7 0.04
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46
Consensus pattern (34 bp):
TTGCGATTTTCATTTCCGCATTGCGATTCTCTCG
Found at i:623840 original size:52 final size:53
Alignment explanation
Indices: 623728--623915 Score: 351
Period size: 53 Copynumber: 3.5 Consensus size: 53
623718 AGAATCGCAA
*
623728 TGCGATTTTCTTTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
623781 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
623833 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
623886 TGCGATTTTCATTTCCGCATTGCGATTTTC
1 TGCGATTTTCATTT-CGCATTGCGATTTTC
623916 TTGTTGGGAT
Statistics
Matches: 132, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
52 52 0.39
53 65 0.49
54 15 0.11
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.46
Consensus pattern (53 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
Found at i:626260 original size:12 final size:12
Alignment explanation
Indices: 626243--626267 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
626233 TCTTCGGGGA
626243 CTTTTTCTTCTT
1 CTTTTTCTTCTT
626255 CTTTTTCTTCTT
1 CTTTTTCTTCTT
626267 C
1 C
626268 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:626476 original size:24 final size:24
Alignment explanation
Indices: 626442--626488 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
626432 CTGAAACATC
626442 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
626466 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
626489 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:627209 original size:20 final size:20
Alignment explanation
Indices: 627181--627409 Score: 226
Period size: 20 Copynumber: 11.4 Consensus size: 20
627171 AAATTTCAGT
* * *
627181 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
627201 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
627221 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
627241 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
627261 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
627281 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
627301 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* * * *
627321 GTTGCTATTTACAGATACAC
1 GTTGCGATTTACGGATTCGC
* *
627341 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
627361 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
627381 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
627401 GTTGCGATT
1 GTTGCGATT
627410 CTTGAAAATC
Statistics
Matches: 179, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
20 178 0.99
21 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:627427 original size:21 final size:20
Alignment explanation
Indices: 627377--627475 Score: 81
Period size: 21 Copynumber: 4.8 Consensus size: 20
627367 ATTTATGTGT
* * * *
627377 TCGCGTTGCGATTTTCATAT
1 TCGCATTGCGATTTTGAAAA
*
627397 TCGCGTTGCGATTCTTGAAAA
1 TCGCATTGCGATT-TTGAAAA
* * **
627418 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTG-AAAA
*
627439 TCGCATTGCGATTTTCAAGAA
1 TCGCATTGCGATTTTGAA-AA
627460 TCGCATTGCGATTTTG
1 TCGCATTGCGATTTTG
627476 GAAACTGATT
Statistics
Matches: 62, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
20 17 0.27
21 45 0.73
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37
Consensus pattern (20 bp):
TCGCATTGCGATTTTGAAAA
Found at i:627749 original size:16 final size:17
Alignment explanation
Indices: 627728--627799 Score: 51
Period size: 17 Copynumber: 4.1 Consensus size: 17
627718 TGAAATAAGG
627728 AAAGT-AATAAAAAAAT
1 AAAGTAAATAAAAAAAT
*
627744 AAAGTAAATATAAAAAT
1 AAAGTAAATAAAAAAAT
* *
627761 GAA-TAGAATACATAAAAT
1 AAAGTA-AATA-AAAAAAT
627779 AAA-TAAAATGAAGAAAAAT
1 AAAGT-AAAT-AA-AAAAAT
627798 AA
1 AA
627800 TAACACTAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
16 7 0.16
17 16 0.36
18 12 0.27
19 9 0.20
ACGTcount: A:0.71, C:0.01, G:0.08, T:0.19
Consensus pattern (17 bp):
AAAGTAAATAAAAAAAT
Found at i:628028 original size:2 final size:2
Alignment explanation
Indices: 628021--628100 Score: 81
Period size: 2 Copynumber: 39.5 Consensus size: 2
628011 AAGTAAAAGA
* * * *
628021 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AGG AA AT A- AA AT AGG
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT A-T
* *
628064 AA AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
628101 ATAATAATAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
1 1 0.02
2 63 0.95
3 2 0.03
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (2 bp):
AT
Found at i:628106 original size:3 final size:3
Alignment explanation
Indices: 628098--628154 Score: 53
Period size: 3 Copynumber: 18.3 Consensus size: 3
628088 ATATATATAT
* * *
628098 ATA ATA ATA ATA ATA ATA ATA CTA ATG ATA AAA ATA TATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA ATA
628145 A-A ATTA ATA A
1 ATA A-TA ATA A
628155 AACGTAATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 2 0.04
3 34 0.76
4 9 0.20
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:637417 original size:16 final size:17
Alignment explanation
Indices: 637386--637421 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
637376 CGTATCGCCG
637386 ACAAAATTTCACTATTC
1 ACAAAATTTCACTATTC
637403 ACAAAATTT-ACTATTC
1 ACAAAATTTCACTATTC
637419 ACA
1 ACA
637422 TGAATAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (17 bp):
ACAAAATTTCACTATTC
Found at i:643158 original size:25 final size:25
Alignment explanation
Indices: 643120--643243 Score: 223
Period size: 25 Copynumber: 5.0 Consensus size: 25
643110 AGTTAAGGGA
*
643120 TTAGGG-TTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
643144 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
643169 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
643194 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
*
643219 TTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
643244 GGGTTGTTGG
Statistics
Matches: 97, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
24 6 0.06
25 91 0.94
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAAACTGAT
Found at i:643361 original size:11 final size:11
Alignment explanation
Indices: 643338--643386 Score: 55
Period size: 11 Copynumber: 4.3 Consensus size: 11
643328 GCAAAAATTG
643338 TAATAAT-AAA
1 TAATAATAAAA
643348 TAATAATAAAA
1 TAATAATAAAA
*
643359 TAATAATAAGA
1 TAATAATAAAA
643370 TAACGATAATAAAA
1 T-A--ATAATAAAA
643384 TAA
1 TAA
643387 CGGAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
10 7 0.21
11 15 0.45
12 1 0.03
13 1 0.03
14 9 0.27
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:643743 original size:90 final size:89
Alignment explanation
Indices: 643631--643800 Score: 279
Period size: 90 Copynumber: 1.9 Consensus size: 89
643621 CTTTAGGAAG
* * *
643631 GGTGATAACTCGGTTCCTACGTGATGAGGACGGCTGGTTATCCTAAT-GTTGACACGGCTCTTGC
1 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTAT-CT-ATGGTTGACACGGCTCATAC
643695 ATGATGAAGAGATCTGGCCATCTAAA
64 ATGATGAAGAGATCTGGCCATCTAAA
*
643721 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTGACACGGCTCATACGT
1 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTGACACGGCTCATACAT
643786 GATGAAGAGATCTGG
66 GATGAAGAGATCTGG
643801 TCTGGGATGA
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
88 2 0.03
89 33 0.44
90 40 0.53
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (89 bp):
GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTGACACGGCTCATACAT
GATGAAGAGATCTGGCCATCTAAA
Found at i:643764 original size:46 final size:46
Alignment explanation
Indices: 643631--643764 Score: 123
Period size: 46 Copynumber: 3.0 Consensus size: 46
643621 CTTTAGGAAG
*
643631 GGTGATAACTCGGTTCCTACGTGATGAGGACGGCTGGTTATCCT-AA
1 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTAT-CTAAA
* * * * * * * * **
643677 --TGTTGACACGGCTCTTGCATGATGAAGA-GATCTGGCCATCTAAA
1 GGTGATAACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCTAAA
643721 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTA
1 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTA
643765 TGGTTGACAC
Statistics
Matches: 62, Mismatches: 21, Indels: 10
0.67 0.23 0.11
Matches are distributed among these distances:
43 3 0.05
44 28 0.45
46 30 0.48
47 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (46 bp):
GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAA
Found at i:643785 original size:43 final size:44
Alignment explanation
Indices: 643648--643790 Score: 130
Period size: 46 Copynumber: 3.2 Consensus size: 44
643638 ACTCGGTTCC
*
643648 TACGTGATGAGGACGGCTGGTTATCCTAAT-GTTGACACGGCTCT
1 TACGTGATGAGGACGGCTGGTTAT-CTAATGGTTGACACGGCTCA
* * * * ** * * * *
643692 TGCATGATGAAGA-GATCTGGCCATCTAAAGGTGATAACACGGTTCC
1 TACGTGATGAGGACG-GCTGGTTATCTAATGGT--TGACACGGCTCA
643738 TACGTGATGAGGACGGCTGGTTATCT-ATGGTTGACACGGCTCA
1 TACGTGATGAGGACGGCTGGTTATCTAATGGTTGACACGGCTCA
643781 TACGTGATGA
1 TACGTGATGA
643791 AGAGATCTGG
Statistics
Matches: 74, Mismatches: 20, Indels: 11
0.70 0.19 0.10
Matches are distributed among these distances:
43 24 0.32
44 18 0.24
45 4 0.05
46 27 0.36
47 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (44 bp):
TACGTGATGAGGACGGCTGGTTATCTAATGGTTGACACGGCTCA
Found at i:643801 original size:43 final size:44
Alignment explanation
Indices: 643664--643801 Score: 120
Period size: 43 Copynumber: 3.1 Consensus size: 44
643654 ATGAGGACGG
* * *
643664 CTGGTTATCCTAAT-GTTGACACGGCTCTTGCATGATGAAGAGAT
1 CTGGTTAT-CTAATGGTTGACACGGCTCATACGTGATGAAGAGAT
** * * * * * *
643708 CTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACG-G
1 CTGGTTATCTAATGGT--TGACACGGCTCATACGTGATGAAGA-GAT
643754 CTGGTTATCT-ATGGTTGACACGGCTCATACGTGATGAAGAGAT
1 CTGGTTATCTAATGGTTGACACGGCTCATACGTGATGAAGAGAT
643797 CTGGT
1 CTGGT
643802 CTGGGATGAC
Statistics
Matches: 71, Mismatches: 18, Indels: 11
0.71 0.18 0.11
Matches are distributed among these distances:
42 1 0.01
43 30 0.42
44 8 0.11
45 4 0.06
46 27 0.38
47 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (44 bp):
CTGGTTATCTAATGGTTGACACGGCTCATACGTGATGAAGAGAT
Found at i:658049 original size:15 final size:15
Alignment explanation
Indices: 658025--658053 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
658015 GATGTTTCCC
658025 TTTTCCTTTTTTTTT
1 TTTTCCTTTTTTTTT
658040 TTTT-CTTTTTTTTT
1 TTTTCCTTTTTTTTT
658054 CTGTTTCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTCCTTTTTTTTT
Found at i:658446 original size:25 final size:25
Alignment explanation
Indices: 658408--658531 Score: 223
Period size: 25 Copynumber: 5.0 Consensus size: 25
658398 AGTTAAGGGA
*
658408 TTAGGG-TTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
658432 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
658457 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
658482 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
*
658507 TTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
658532 GGGTTGTTGG
Statistics
Matches: 97, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
24 6 0.06
25 91 0.94
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAAACTGAT
Found at i:658649 original size:11 final size:11
Alignment explanation
Indices: 658626--658674 Score: 55
Period size: 11 Copynumber: 4.3 Consensus size: 11
658616 GCAAAAATTG
658626 TAATAAT-AAA
1 TAATAATAAAA
658636 TAATAATAAAA
1 TAATAATAAAA
*
658647 TAATAATAAGA
1 TAATAATAAAA
658658 TAACGATAATAAAA
1 T-A--ATAATAAAA
658672 TAA
1 TAA
658675 CGGAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
10 7 0.21
11 15 0.45
12 1 0.03
13 1 0.03
14 9 0.27
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:660208 original size:21 final size:21
Alignment explanation
Indices: 660168--660222 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
660158 TTTTGCCAAA
* *
660168 AAAAATCGGAT-TCGGATCCG
1 AAAATTCGGATATCCGATCCG
* *
660188 GATATTCGGATATCCGATCCG
1 AAAATTCGGATATCCGATCCG
*
660209 AAAATACGGATATC
1 AAAATTCGGATATC
660223 TGAAATTTCG
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (21 bp):
AAAATTCGGATATCCGATCCG
Found at i:664141 original size:21 final size:21
Alignment explanation
Indices: 664117--664160 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
664107 AAGACAATCA
664117 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
664138 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
664159 AG
1 AG
664161 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:664231 original size:33 final size:33
Alignment explanation
Indices: 664194--664259 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
664184 AAATAGATGG
*
664194 AGTGGTGAAAGAAGTAAAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAAAGGTGTTAAGGGGTGA
* **
664227 AGTGGTGAAATAAGTTTAGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAAAGGTGTTAAGGGGTGA
664260 TCTTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.42, T:0.26
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAAAGGTGTTAAGGGGTGA
Found at i:665463 original size:4 final size:4
Alignment explanation
Indices: 665454--671841 Score: 12263
Period size: 4 Copynumber: 1615.0 Consensus size: 4
665444 CTAAGAGATT
665454 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665502 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665550 TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665596 TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665642 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665690 TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665736 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665784 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665832 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665880 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665928 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
665976 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666024 TGTA TGTA TGTA TGT- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666071 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666118 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666164 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666210 TGTA -GT- TGTA TGTA TGTA TGTA TGTA TGT- TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666255 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666303 TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666350 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666398 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666446 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666494 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666542 TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666588 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666636 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666682 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666729 TGTA TGTA TGTA TGTA TGTA --TA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
666775 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-A TGTA TGTC
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666822 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666870 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666918 TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
666964 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667012 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667060 TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667106 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667154 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667202 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667250 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667298 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667346 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667394 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT- TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667441 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667489 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667537 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667585 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667633 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667681 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667729 -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667776 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667824 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667872 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667920 TGTA TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
667967 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668015 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668063 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668111 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668158 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668206 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668253 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668301 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668349 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT- TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668396 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668444 TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668491 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668539 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668587 TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668633 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668681 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668727 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668775 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668823 TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668869 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668917 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
668965 TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669011 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669059 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669107 TGTA TGTA TGTA TGTA --TA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669153 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669201 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669249 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669297 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669345 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669393 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669441 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669489 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669537 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669585 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669633 TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669679 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669727 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669775 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669823 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669871 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669917 TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
669963 TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670010 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670056 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670104 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670152 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670200 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670246 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670294 TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA -GTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670339 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670387 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670433 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670481 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670529 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670577 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670625 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670673 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670721 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670769 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670817 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670865 TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670912 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
670960 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671006 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671054 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671100 TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671147 TGTA TGTA TGTA --TA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671193 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671241 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671289 TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671335 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671383 -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671430 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671478 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671526 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671574 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671622 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671670 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671718 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671766 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671814 TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA
671842 CATTATGTAA
Statistics
Matches: 6310, Mismatches: 2, Indels: 144
0.98 0.00 0.02
Matches are distributed among these distances:
2 52 0.01
3 58 0.01
4 6200 0.98
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:672900 original size:21 final size:21
Alignment explanation
Indices: 672874--672926 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
672864 GTGAACGCAT
672874 AAAGTGTCGATACATTTTCAA
1 AAAGTGTCGATACATTTTCAA
672895 AAAGTGTCGATACATTTTCAA
1 AAAGTGTCGATACATTTTCAA
*
672916 AAAGTATCGAT
1 AAAGTGTCGAT
672927 CCCAGAAACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (21 bp):
AAAGTGTCGATACATTTTCAA
Found at i:673240 original size:201 final size:201
Alignment explanation
Indices: 672895--674062 Score: 1960
Period size: 201 Copynumber: 5.8 Consensus size: 201
672885 ACATTTTCAA
*
672895 AAAGTGTCGATACATTTTCAAAAAGTATCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
1 AAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
* * *
672960 ATATGTAAATTTACAATGTAACCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTACAACA
66 ATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACA
* * * *
673025 TGTATCGACACTTGTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAATGTCAAAAAGGGTGA
131 TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCCACAATGGATGCCAAAAAGGGTGA
673090 ACGCAT
196 ACGCAT
* * *
673096 AAAGTGTCGATACATTTTCAAAAAGTGTTGATCCTAGAAACATATGCATTCATAAGTATAATGTA
1 AAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
* * * ** *
673161 ATAGGTAAATTTACAATGTAATCGATAAAAATATACTAGTTTTATGAGAGAATAGGTCTACAACA
66 ATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACA
*
673226 TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGGATGCCAAAAA-GGTGA
131 TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCCACAATGGATGCCAAAAAGGGTGA
*
673290 ACGCCT
196 ACGCAT
* *
673296 AAAGTGTCGATACATTTTCAAAAAGTGTCGATTCCAGAAACATATGCATCCATAAGTATAATGCA
1 AAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
*
673361 ATAGGTAAATTTACAATATAACCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACA
66 ATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACA
* *
673426 TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCCACAATGAATGCCAAAAAGAGTGA
131 TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCCACAATGGATGCCAAAAAGGGTGA
673491 ACGCAT
196 ACGCAT
673497 AAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
1 AAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
*
673562 ATAGGTAAATTTACAATGTAACCAGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACA
66 ATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACA
* * * *
673627 TGTATCAATACTTGTTTAATTTTATGTCGATACTTTTGGTCCACAATGGATACCAAAAAGGGTGA
131 TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCCACAATGGATGCCAAAAAGGGTGA
673692 ACGCAT
196 ACGCAT
* * * * *
673698 AAAGTGTCAATCCCTTTTCAAAAAGTGTCGATCTCAGAAATATATGCATCCATAAGTATAATGTA
1 AAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
* *
673763 ATAGGTAAATTTACAATGTAACCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTACAACA
66 ATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACA
*
673828 TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCTACAATGGATGCCAAAAAGGGTGA
131 TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCCACAATGGATGCCAAAAAGGGTGA
673893 ACGCAT
196 ACGCAT
*
673899 AAAGTGTTGATACATTTTCAAAAAGTGTCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
1 AAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
*
673964 ATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATAAGAAAATAGGTCTACAACA
66 ATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACA
* *
674029 TATATCGACACTTTTTTAATTTTGTGTCGATACT
131 TGTATCGACACTTGTTTAATTTTGTGTCGATACT
674063 AATTTAAATA
Statistics
Matches: 901, Mismatches: 65, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
200 185 0.21
201 716 0.79
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (201 bp):
AAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
ATAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACA
TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCCACAATGGATGCCAAAAAGGGTGA
ACGCAT
Found at i:673642 original size:401 final size:402
Alignment explanation
Indices: 672700--674062 Score: 2172
Period size: 402 Copynumber: 3.3 Consensus size: 402
672690 GTAAAATTTA
*
672700 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGATAAATTTACAATGTAACCGGTA
1 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
*
672765 TAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATTTTGTGT
66 TAAATATACCGGTTTTATAAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATTTTGTGT
*
672830 CGATACTTTTGGTCCAGAATGGATGCGAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
131 CGATACTTTTGGTCCAGAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
672895 AAAGTGTCGATACATTTTCAAAAAGTATCGATCCCAGAAACATATGCATCCATAAGTATAATGTA
196 AAA--GT-G--------TC-----G-AT---T-CCAGAAACATATGCATCCATAAGTATAATGTA
*
672960 ATATGTAAATTTACAATGTAACCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTACAACA
240 ATAGGTAAATTTACAATGTAACCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTACAACA
* * *
673025 TGTATCGACACTTGTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAATGTCAAAAAGGGTGA
305 TGTATCGACACTTGTTTAATTTTGTGTCGATACTTTTGGTCCACAATGAATGCCAAAAAGGGTGA
673090 ACGCATAAAGTGTCGATACATTTTCAAAAAGTG
370 ACGCATAAAGTGTCGATACATTTTCAAAAAGTG
* * * * *
673123 TTGATCCTAGAAACATATGCATTCATAAGTATAATGTAATAGGTAAATTTACAATGTAATCGATA
1 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
* ** *
673188 AAAATATACTAGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATTTTGTGT
66 TAAATATACCGGTTTTATAAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATTTTGTGT
*
673253 CGATACTTTTGGTCCAGAATGGATGCCAAAAA-GGTGAACGCCTAAAGTGTCGATACATTTTCAA
131 CGATACTTTTGGTCCAGAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
* *
673317 AAAGTGTCGATTCCAGAAACATATGCATCCATAAGTATAATGCAATAGGTAAATTTACAATATAA
196 AAAGTGTCGATTCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAA
* *
673382 CCGGTATAAATATACCGGTTTTATAAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATT
261 CCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATT
*
673447 TTGTGTCGATACTTTTGGTCCACAATGAATGCCAAAAAGAGTGAACGCATAAAGTGTCGATACAT
326 TTGTGTCGATACTTTTGGTCCACAATGAATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACAT
673512 TTTCAAAAAGTG
391 TTTCAAAAAGTG
*
673524 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCAGTA
1 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
* * *
673589 TAAATATACCGGTTTTATAAGAGAATAGGTCTACAACATGTATCAATACTTGTTTAATTTTATGT
66 TAAATATACCGGTTTTATAAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATTTTGTGT
* * * * *
673654 CGATACTTTTGGTCCACAATGGATACCAAAAAGGGTGAACGCATAAAGTGTCAATCCCTTTTCAA
131 CGATACTTTTGGTCCAGAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
*
673719 AAAGTGTCGA-TCTCAGAAATATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTA
196 AAAGTGTCGATTC-CAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTA
673783 ACCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAAT
260 ACCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAAT
* * *
673848 TTTGTGTCGATACTTTTGGTCTACAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTTGATACA
325 TTTGTGTCGATACTTTTGGTCCACAATGAATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACA
673913 TTTTCAAAAAGTG
390 TTTTCAAAAAGTG
673926 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
1 TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
* * *
673991 TAAATATACCGGTTTTATAAGAAAATAGGTCTACAACATATATCGACACTTTTTTAATTTTGTGT
66 TAAATATACCGGTTTTATAAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATTTTGTGT
674056 CGATACT
131 CGATACT
674063 AATTTAAATA
Statistics
Matches: 883, Mismatches: 55, Indels: 25
0.92 0.06 0.03
Matches are distributed among these distances:
401 335 0.38
402 354 0.40
405 2 0.00
406 1 0.00
411 2 0.00
419 1 0.00
420 2 0.00
422 34 0.04
423 152 0.17
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (402 bp):
TCGATCCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAACCGGTA
TAAATATACCGGTTTTATAAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATTTTGTGT
CGATACTTTTGGTCCAGAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAA
AAAGTGTCGATTCCAGAAACATATGCATCCATAAGTATAATGTAATAGGTAAATTTACAATGTAA
CCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTACAACATGTATCGACACTTGTTTAATT
TTGTGTCGATACTTTTGGTCCACAATGAATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACAT
TTTCAAAAAGTG
Found at i:675560 original size:12 final size:12
Alignment explanation
Indices: 675526--675560 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
675516 CAAGCGGTCA
*
675526 ATGAAGATGACG
1 ATGAAGATGATG
675538 ATGAAGATGATG
1 ATGAAGATGATG
*
675550 ATGATGATGAT
1 ATGAAGATGAT
675561 CCAAATAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.40, C:0.03, G:0.31, T:0.26
Consensus pattern (12 bp):
ATGAAGATGATG
Found at i:677067 original size:51 final size:53
Alignment explanation
Indices: 677012--677121 Score: 122
Period size: 51 Copynumber: 2.1 Consensus size: 53
677002 AGAATGGATG
*
677012 CCAAAAAGGG-GGAAC-CTACAAAGTGTCGATACATTT-TCATAGAGTGTCGAT-
1 CCAAAAAGGGTGGAACGC-ACAAAGTGTCGATACATTTATCA-AAAGTGTCGATC
* * * *
677063 CC-AAAAGGGTTGCACGCATAAAGTGTCGATACATTTATTAAAAGTGTCGATC
1 CCAAAAAGGGTGGAACGCACAAAGTGTCGATACATTTATCAAAAGTGTCGATC
677115 CCAAAAA
1 CCAAAAA
677122 TATCAAAACC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
50 7 0.14
51 33 0.67
52 5 0.10
53 4 0.08
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (53 bp):
CCAAAAAGGGTGGAACGCACAAAGTGTCGATACATTTATCAAAAGTGTCGATC
Found at i:680234 original size:73 final size:73
Alignment explanation
Indices: 680065--680217 Score: 190
Period size: 73 Copynumber: 2.1 Consensus size: 73
680055 AACATGTCAA
* * * * *
680065 CATAATGTATCGACACTTG-TGTAATTTGTGTCGATACTTATTGTCCAGGATGAATGCACAAACG
1 CATAAAGTATCGACACTTGAT-AAATTTGTGTCGATACTTATTGTCCAGAATGAATCCACAAAAG
680129 AGGTGCACG
65 AGGTGCACG
680138 CATAAAGTATCGACACTTGATAAATTTGTGTCGATACTT-TTGGTCCAGAATGAATACCA-AAAA
1 CATAAAGTATCGACACTTGATAAATTTGTGTCGATACTTATT-GTCCAGAATGAAT-CCACAAAA
680201 G-GGTGCAAC-
64 GAGGTGC-ACG
680210 CATAAAGT
1 CATAAAGT
680218 GTTGATACAT
Statistics
Matches: 71, Mismatches: 5, Indels: 9
0.84 0.06 0.11
Matches are distributed among these distances:
72 15 0.21
73 53 0.75
74 3 0.04
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (73 bp):
CATAAAGTATCGACACTTGATAAATTTGTGTCGATACTTATTGTCCAGAATGAATCCACAAAAGA
GGTGCACG
Found at i:680629 original size:64 final size:64
Alignment explanation
Indices: 680555--680682 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
680545 ATAAGCGCTA
*
680555 CCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATG
1 CCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTTCCGATTAAATG
*
680619 CCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGATTAAATG
1 CCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTTCCGATTAAATG
680683 ATATAACATT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.41
Consensus pattern (64 bp):
CCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTTCCGATTAAATG
Found at i:683982 original size:2 final size:2
Alignment explanation
Indices: 683975--684020 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
683965 TTTTATAACC
683975 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
684017 AT AT
1 AT AT
684021 CTTCATATGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:684043 original size:8 final size:7
Alignment explanation
Indices: 683974--684047 Score: 56
Period size: 6 Copynumber: 11.6 Consensus size: 7
683964 ATTTTATAAC
683974 CATATAT
1 CATATAT
683981 -ATATAT
1 CATATAT
683987 -ATATAT
1 CATATAT
683993 -ATATAT
1 CATATAT
683999 -ATATAT
1 CATATAT
684005 -ATATAT
1 CATATAT
684011 -ATATAT
1 CATATAT
*
684017 -ATATCTT
1 CATAT-AT
*
684024 CATATGT
1 CATATAT
*
684031 GATATA-
1 CATATAT
684037 CATATAT
1 CATATAT
684044 CATA
1 CATA
684048 CATAGTTGAA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
6 45 0.76
7 10 0.17
8 4 0.07
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.46
Consensus pattern (7 bp):
CATATAT
Found at i:688519 original size:28 final size:28
Alignment explanation
Indices: 688487--688582 Score: 95
Period size: 28 Copynumber: 3.3 Consensus size: 28
688477 TGAATAGTTC
* *
688487 AGGTACCTATTTTGACATAAAATACTTT
1 AGGTACTTATTTTGACAAAAAATACTTT
*
688515 AGGTACTTATTTTGACCAAAAAGATAACATT
1 AGGTACTTATTTTGA-CAAAAA-AT-ACTTT
* * *
688546 AGGTATTTGTTTTGAC-CAAAATATCTTT
1 AGGTACTTATTTTGACAAAAAATA-CTTT
688574 AGGTACTTA
1 AGGTACTTA
688583 AAGAAGATAT
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
27 1 0.02
28 26 0.47
29 8 0.15
30 3 0.05
31 17 0.31
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (28 bp):
AGGTACTTATTTTGACAAAAAATACTTT
Found at i:692275 original size:12 final size:12
Alignment explanation
Indices: 692260--692303 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
692250 TCAACGGTCG
692260 GGTCGGGTCAAC
1 GGTCGGGTCAAC
*
692272 GGTCGGGTC--G
1 GGTCGGGTCAAC
692282 GGTCGGGTCAAC
1 GGTCGGGTCAAC
692294 GGTCGGGTCA
1 GGTCGGGTCA
692304 GACTGGTCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 9 0.32
12 19 0.68
ACGTcount: A:0.11, C:0.23, G:0.48, T:0.18
Consensus pattern (12 bp):
GGTCGGGTCAAC
Found at i:692283 original size:22 final size:22
Alignment explanation
Indices: 692241--692302 Score: 97
Period size: 22 Copynumber: 2.7 Consensus size: 22
692231 GAAAGTCAAC
*
692241 GGTCAACGGTCAACGGTCGGGTCG
1 GGTCAACGGTC--GGGTCGGGTCG
692265 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
692287 GGTCAACGGTCGGGTC
1 GGTCAACGGTCGGGTC
692303 AGACTGGTCG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
22 26 0.70
24 11 0.30
ACGTcount: A:0.13, C:0.24, G:0.45, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:692302 original size:17 final size:17
Alignment explanation
Indices: 692248--692285 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
692238 AACGGTCAAC
692248 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
692265 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
692282 GGTC
1 GGTC
692286 GGGTCAACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.11, C:0.24, G:0.47, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:694110 original size:3 final size:3
Alignment explanation
Indices: 694102--694126 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
694092 TACTCTTCAC
694102 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
694127 TTTTATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:699860 original size:2 final size:2
Alignment explanation
Indices: 699853--699884 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
699843 TTGAGTGTTC
699853 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
699885 ACGATAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:700404 original size:5 final size:5
Alignment explanation
Indices: 700373--700441 Score: 52
Period size: 5 Copynumber: 13.6 Consensus size: 5
700363 AAATAATTGG
* * **
700373 ATAAA ACAAA TATAAA A-AAA ATAAAA ATAAA ATGAA ATTGA ATAAA ATAAA
1 ATAAA ATAAA -ATAAA ATAAA AT-AAA ATAAA ATAAA ATAAA ATAAA ATAAA
*
700424 AT-AA ATGAAG ATAAA ATA
1 ATAAA AT-AAA ATAAA ATA
700442 TATATACAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
4 8 0.16
5 30 0.60
6 12 0.24
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:700439 original size:41 final size:39
Alignment explanation
Indices: 700353--700428 Score: 100
Period size: 41 Copynumber: 1.9 Consensus size: 39
700343 AACCAATAAT
* *
700353 AATAAACATAAAATAATTGGATAAAACAAATATAAAAAA
1 AATAAAAATAAAATAATTGAATAAAACAAATATAAAAAA
*
700392 AATAAAAATAAAATGAAATTGAATAAAATAAA-ATAAA
1 AATAAAAATAAAAT--AATTGAATAAAACAAATATAAA
700429 TGAAGATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 13 0.41
40 5 0.16
41 14 0.44
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (39 bp):
AATAAAAATAAAATAATTGAATAAAACAAATATAAAAAA
Found at i:700584 original size:18 final size:17
Alignment explanation
Indices: 700527--700587 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 17
700517 AAACATAATG
700527 AAAATAAATAAATAATATA
1 AAAAT-AATAAA-AATATA
700546 AATAA-AATAAAACATTATA
1 AA-AATAATAAAA-A-TATA
700565 AAAATATATAAAAATATA
1 AAAATA-ATAAAAATATA
700583 AAAAT
1 AAAAT
700588 GCATGTATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
17 1 0.03
18 18 0.49
19 10 0.27
20 8 0.22
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATAATAAAAATATA
Found at i:700718 original size:2 final size:2
Alignment explanation
Indices: 700711--700743 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
700701 TGAAGTAAGA
700711 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
700744 AACGTTAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:700812 original size:8 final size:8
Alignment explanation
Indices: 700799--700845 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
700789 TAAATAAAAA
700799 ATAATAAT
1 ATAATAAT
700807 ATAAT-AT
1 ATAATAAT
700814 ATATATATAT
1 ATA-ATA-AT
*
700824 ATAATAAG
1 ATAATAAT
*
700832 AAAATAAT
1 ATAATAAT
700840 ATAATA
1 ATAATA
700846 TAACGCAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
7 5 0.16
8 19 0.59
9 3 0.09
10 5 0.16
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (8 bp):
ATAATAAT
Found at i:702203 original size:167 final size:168
Alignment explanation
Indices: 701937--702275 Score: 448
Period size: 167 Copynumber: 2.0 Consensus size: 168
701927 AACTTGACAA
* * * *
701937 TTTTGATGGCAGATAACCCTTCTTGCCTTGAGCTATGCTGTAAATTTGATTTGCCTCTGAGTTGA
1 TTTTGATGGCAAATAACCCTTCTTGCCTTGAGCTATGCTGCAAA-TTGATATGCCTCTGAGCTGA
* * * * *
702002 ATGTAATCGAACTCGAAGATTTTTTATGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAAT
65 ACGTAATCGAACTCGAAGATCTTTGATCACAGATAACCCTTCTAGCCTTGAGCTATGCTGTAAAT
** * *
702067 GATGTTCCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTC
130 GATGCGCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTC
* * *
702106 TTTTGTTGGCAAATAGCCCTTCTTGCCTTGAGCTATGTTGCAAA-TGATATGCCT-TGGAGCTGA
1 TTTTGATGGCAAATAACCCTTCTTGCCTTGAGCTATGCTGCAAATTGATATGCCTCT-GAGCTGA
* * * * *
702169 GCGTAGTCGAACTCGAAGGTCTTTGCTCACAGATAGCCCTTCTAGCCTTGAGCTATGCTGTAAAT
65 ACGTAATCGAACTCGAAGATCTTTGATCACAGATAACCCTTCTAGCCTTGAGCTATGCTGTAAAT
*
702234 GATGCGCCTTGGAGCTGAGTGTAATCGAACTCGAAGGTC
130 GATGCGCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTC
702273 TTT
1 TTT
702276 ATTGACATAT
Statistics
Matches: 147, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
166 1 0.01
167 107 0.73
169 39 0.27
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (168 bp):
TTTTGATGGCAAATAACCCTTCTTGCCTTGAGCTATGCTGCAAATTGATATGCCTCTGAGCTGAA
CGTAATCGAACTCGAAGATCTTTGATCACAGATAACCCTTCTAGCCTTGAGCTATGCTGTAAATG
ATGCGCCTTGGAGCTGAGCGTAATCGAACTCGAAGGTC
Found at i:702294 original size:83 final size:83
Alignment explanation
Indices: 701946--702282 Score: 390
Period size: 83 Copynumber: 4.0 Consensus size: 83
701936 ATTTTGATGG
* * * * **
701946 CAGATAACCCTTCTTGCCTTGAGCTATGCTGTAAATTTGATTTGCCTCT-GAGTTGAATGTAATC
1 CAGATAGCCCTTCTAGCCTTGAGCTATGCTGTAAA--TGATGTGCCT-TGGAGCTGAGCGTAATC
* *
702010 GAACTCGAAGAT-TTTTTATGA
63 GAACTCGAAGGTCTTTGT-TGA
* * * *
702031 CAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTTCCTTGGAGCTGAGCGTAGTCGAA
1 CAGATAGCCCTTCTAGCCTTGAGCTATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTAATCGAA
* *
702096 CTTGAAGGTCTTTTGTTGG
66 CTCGAAGGTC-TTTGTTGA
* * * * * *
702115 CAAATAGCCCTTCTTGCCTTGAGCTATGTTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAA
1 CAGATAGCCCTTCTAGCCTTGAGCTATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTAATCGAA
* *
702180 CTCGAAGGTCTTTGCTCA
66 CTCGAAGGTCTTTGTTGA
* *
702198 CAGATAGCCCTTCTAGCCTTGAGCTATGCTGTAAATGATGCGCCTTGGAGCTGAGTGTAATCGAA
1 CAGATAGCCCTTCTAGCCTTGAGCTATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTAATCGAA
*
702263 CTCGAAGGTCTTTATTGA
66 CTCGAAGGTCTTTGTTGA
702281 CA
1 CA
702283 TATACTCCTT
Statistics
Matches: 214, Mismatches: 35, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
82 1 0.00
83 108 0.50
84 68 0.32
85 37 0.17
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (83 bp):
CAGATAGCCCTTCTAGCCTTGAGCTATGCTGTAAATGATGTGCCTTGGAGCTGAGCGTAATCGAA
CTCGAAGGTCTTTGTTGA
Found at i:702786 original size:106 final size:106
Alignment explanation
Indices: 702646--703046 Score: 622
Period size: 106 Copynumber: 3.8 Consensus size: 106
702636 AGTCAGTCGC
* * * *
702646 CCCTTCGCTGTGAAGTTGAGCTTGTGATGTCTTGAGTCCAATATCCTTCACTGTGAAGTTGAAAT
1 CCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
*
702711 TGGCTCTGAAACTGGGAAATTGTTTGTTGACAACCAACCGT
66 TGGCTCTGAAACTGGGAAATTGTTTGTTGACAACCAGCCGT
*
702752 CCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCATTCGCTGTGAAGTTGAAAT
1 CCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
* * ** * *
702817 TGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTCAGCAGC
66 TGGCTCTGAAACTGGGAAATTGTTTGTTGACAACCAGCCGT
* * * *
702858 CCCTTTGTTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCCTTCGTTGTGAAGTTGAAAT
1 CCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
* * *
702923 TGACTCTGAAACTGGGAATTTGTTTGTTGACAACCAGTCGT
66 TGGCTCTGAAACTGGGAAATTGTTTGTTGACAACCAGCCGT
702964 CCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
1 CCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
*
703029 TGGCTCTGAAATTGGGAA
66 TGGCTCTGAAACTGGGAA
703047 GCCCATTCGT
Statistics
Matches: 264, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
106 264 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (106 bp):
CCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAAT
TGGCTCTGAAACTGGGAAATTGTTTGTTGACAACCAGCCGT
Found at i:702826 original size:205 final size:205
Alignment explanation
Indices: 702474--703047 Score: 907
Period size: 212 Copynumber: 2.8 Consensus size: 205
702464 GTATTGTTCC
* * * *
702474 GAGTCCAATATCCTCCGCTGTGAAGTTGAAATTAGTTCTGGAACTGGGAATTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAATTTGTTTGTTGACAA
* * * *
702539 CTAGCCATCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATGTCATTCGCTGTGAA
66 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCATTCGCTGTGAA
702604 GTTGAAATTGGCTCTGAAATTGGGAAGTTGACAGTCAGTC-GCCCCTTCGCTGTGAAGTTGAGCT
131 GTTGAAATTGGCTCTGAAATTGGGAAGTTGACAGTCAG-CAGCCCCTTCGCTGTGAAGTTGAGCT
702668 TGTGATGTCTT
195 TGTGATGTCTT
* *
702679 GAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAATTTGTTTGTTGACAA
*
702744 CCAACCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCATTCGCTGTGAA
66 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCATTCGCTGTGAA
* *
702809 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTCAGCAGCCCCTTTGTTGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGGGAA-------GTTGACAGTCAGCAGCCCCTTCGCTGTGAAGT
*
702874 TGAGCTTGTGCTGTCTT
189 TGAGCTTGTGATGTCTT
* *
702891 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAACTGGGAATTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAATTTGTTTGTTGACAA
* *
702956 CCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCCTTCGCTGTGAA
66 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCATTCGCTGTGAA
703021 GTTGAAATTGGCTCTGAAATTGGGAAG
131 GTTGAAATTGGCTCTGAAATTGGGAAG
703048 CCCATTCGTC
Statistics
Matches: 340, Mismatches: 21, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
205 146 0.43
211 1 0.00
212 193 0.57
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (205 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAATTTGTTTGTTGACAA
CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAGTCCAATATCATTCGCTGTGAA
GTTGAAATTGGCTCTGAAATTGGGAAGTTGACAGTCAGCAGCCCCTTCGCTGTGAAGTTGAGCTT
GTGATGTCTT
Found at i:704222 original size:18 final size:18
Alignment explanation
Indices: 704195--704230 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
704185 TGTTGAATCC
*
704195 CCAAAGATGCCCCAATAT
1 CCAAAAATGCCCCAATAT
704213 CCAAAAATGCCCCAATAT
1 CCAAAAATGCCCCAATAT
704231 TTGATGTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.33, G:0.08, T:0.17
Consensus pattern (18 bp):
CCAAAAATGCCCCAATAT
Found at i:704691 original size:22 final size:22
Alignment explanation
Indices: 704666--704709 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
704656 CATTTTTGTT
*
704666 CATTTGATACTCAATGGTTTGA
1 CATTTGATACTCAAAGGTTTGA
*
704688 CATTTGATGCTCAAAGGTTTGA
1 CATTTGATACTCAAAGGTTTGA
704710 TGGGGTAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (22 bp):
CATTTGATACTCAAAGGTTTGA
Found at i:705325 original size:13 final size:12
Alignment explanation
Indices: 705308--705368 Score: 59
Period size: 13 Copynumber: 4.9 Consensus size: 12
705298 TTTTTGTCCC
705308 TTTTTCTTTTTT
1 TTTTTCTTTTTT
* *
705320 CTTTTTGTTCTTT
1 -TTTTTCTTTTTT
*
705333 TTTTGCTTTTGTT
1 TTTTTCTTTT-TT
* *
705346 TTTTGCTTATTT
1 TTTTTCTTTTTT
705358 TTTTTCTTTTT
1 TTTTTCTTTTT
705369 GCCCTTTTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
12 18 0.46
13 21 0.54
ACGTcount: A:0.02, C:0.10, G:0.07, T:0.82
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:705376 original size:34 final size:33
Alignment explanation
Indices: 705297--705377 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 33
705287 TTTGCATGTG
*
705297 TTTTTTGTCCCTTTTTCTTTTTTCTTTTTGTTCT
1 TTTTTTG-CCCTTTTTCTTTTTGCTTTTTGTTCT
*
705331 TTTTTTG--CTTTTGT-TTTTTGCTTATTT-TTTT
1 TTTTTTGCCCTTTT-TCTTTTTGCTT-TTTGTTCT
705362 TCTTTTTGCCCTTTTT
1 T-TTTTTGCCCTTTTT
705378 GTTCTGATTG
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
31 17 0.43
32 10 0.25
33 1 0.03
34 12 0.30
ACGTcount: A:0.01, C:0.15, G:0.07, T:0.77
Consensus pattern (33 bp):
TTTTTTGCCCTTTTTCTTTTTGCTTTTTGTTCT
Found at i:708660 original size:18 final size:17
Alignment explanation
Indices: 708603--708663 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 17
708593 AAACATAATG
708603 AAAATAAATAAATAATATA
1 AAAAT-AATAAA-AATATA
708622 AATAA-AATAAAACATTATA
1 AA-AATAATAAAA-A-TATA
708641 AAAATATATAAAAATATA
1 AAAATA-ATAAAAATATA
708659 AAAAT
1 AAAAT
708664 GTATGTATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
17 1 0.03
18 18 0.49
19 10 0.27
20 8 0.22
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATAATAAAAATATA
Found at i:708794 original size:2 final size:2
Alignment explanation
Indices: 708787--708853 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
708777 TGAAGTAAGA
708787 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
708829 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
708854 ACGTTAGGAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:708921 original size:2 final size:2
Alignment explanation
Indices: 708914--708938 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
708904 AATAATAATA
708914 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
708939 ATAATAGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:710087 original size:33 final size:33
Alignment explanation
Indices: 710045--710133 Score: 151
Period size: 33 Copynumber: 2.7 Consensus size: 33
710035 CACTGTAAAT
* *
710045 TTTCTACTTTGCAGACCAAAAAAGATTGGATAA
1 TTTCGACTTTCCAGACCAAAAAAGATTGGATAA
710078 TTTCGACTTTCCAGACCAAAAAAGATTGGATAA
1 TTTCGACTTTCCAGACCAAAAAAGATTGGATAA
*
710111 TTTCGACTTTTCAGACCAAAAAA
1 TTTCGACTTTCCAGACCAAAAAA
710134 AAAACTGGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.29
Consensus pattern (33 bp):
TTTCGACTTTCCAGACCAAAAAAGATTGGATAA
Found at i:710333 original size:2 final size:2
Alignment explanation
Indices: 710326--710351 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
710316 TGACAAACAC
710326 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
710352 AATCAGTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:718494 original size:25 final size:25
Alignment explanation
Indices: 718456--718579 Score: 223
Period size: 25 Copynumber: 5.0 Consensus size: 25
718446 AGTTAAGGGA
*
718456 TTAGGG-TTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
718480 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
718505 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
718530 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
*
718555 TTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
718580 GGGTTGTTGG
Statistics
Matches: 97, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
24 6 0.06
25 91 0.94
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAAACTGAT
Found at i:718697 original size:11 final size:11
Alignment explanation
Indices: 718674--718722 Score: 55
Period size: 11 Copynumber: 4.3 Consensus size: 11
718664 GCAAAAATTG
718674 TAATAAT-AAA
1 TAATAATAAAA
718684 TAATAATAAAA
1 TAATAATAAAA
*
718695 TAATAATAAGA
1 TAATAATAAAA
718706 TAACGATAATAAAA
1 T-A--ATAATAAAA
718720 TAA
1 TAA
718723 CGGAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
10 7 0.21
11 15 0.45
12 1 0.03
13 1 0.03
14 9 0.27
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:719079 original size:90 final size:89
Alignment explanation
Indices: 718967--719136 Score: 279
Period size: 90 Copynumber: 1.9 Consensus size: 89
718957 CTTTAGGAAG
* * *
718967 GGTGATAACTCGGTTCCTACGTGATGAGGACGGCTGGTTATCCTAAT-GTTGACACGGCTCTTGC
1 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTAT-CT-ATGGTTGACACGGCTCATAC
719031 ATGATGAAGAGATCTGGCCATCTAAA
64 ATGATGAAGAGATCTGGCCATCTAAA
*
719057 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTGACACGGCTCATACGT
1 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTGACACGGCTCATACAT
719122 GATGAAGAGATCTGG
66 GATGAAGAGATCTGG
719137 TCTGGGGATG
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
88 2 0.03
89 33 0.44
90 40 0.53
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (89 bp):
GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTGACACGGCTCATACAT
GATGAAGAGATCTGGCCATCTAAA
Found at i:719100 original size:46 final size:46
Alignment explanation
Indices: 718967--719100 Score: 123
Period size: 46 Copynumber: 3.0 Consensus size: 46
718957 CTTTAGGAAG
*
718967 GGTGATAACTCGGTTCCTACGTGATGAGGACGGCTGGTTATCCT-AA
1 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTAT-CTAAA
* * * * * * * * **
719013 --TGTTGACACGGCTCTTGCATGATGAAGA-GATCTGGCCATCTAAA
1 GGTGATAACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCTAAA
719057 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTA
1 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTA
719101 TGGTTGACAC
Statistics
Matches: 62, Mismatches: 21, Indels: 10
0.67 0.23 0.11
Matches are distributed among these distances:
43 3 0.05
44 28 0.45
46 30 0.48
47 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (46 bp):
GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTAAA
Found at i:719121 original size:43 final size:44
Alignment explanation
Indices: 718984--719126 Score: 130
Period size: 46 Copynumber: 3.2 Consensus size: 44
718974 ACTCGGTTCC
*
718984 TACGTGATGAGGACGGCTGGTTATCCTAAT-GTTGACACGGCTCT
1 TACGTGATGAGGACGGCTGGTTAT-CTAATGGTTGACACGGCTCA
* * * * ** * * * *
719028 TGCATGATGAAGA-GATCTGGCCATCTAAAGGTGATAACACGGTTCC
1 TACGTGATGAGGACG-GCTGGTTATCTAATGGT--TGACACGGCTCA
719074 TACGTGATGAGGACGGCTGGTTATCT-ATGGTTGACACGGCTCA
1 TACGTGATGAGGACGGCTGGTTATCTAATGGTTGACACGGCTCA
719117 TACGTGATGA
1 TACGTGATGA
719127 AGAGATCTGG
Statistics
Matches: 74, Mismatches: 20, Indels: 11
0.70 0.19 0.10
Matches are distributed among these distances:
43 24 0.32
44 18 0.24
45 4 0.05
46 27 0.36
47 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (44 bp):
TACGTGATGAGGACGGCTGGTTATCTAATGGTTGACACGGCTCA
Found at i:719137 original size:43 final size:44
Alignment explanation
Indices: 719000--719137 Score: 120
Period size: 43 Copynumber: 3.1 Consensus size: 44
718990 ATGAGGACGG
* * *
719000 CTGGTTATCCTAAT-GTTGACACGGCTCTTGCATGATGAAGAGAT
1 CTGGTTAT-CTAATGGTTGACACGGCTCATACGTGATGAAGAGAT
** * * * * * *
719044 CTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACG-G
1 CTGGTTATCTAATGGT--TGACACGGCTCATACGTGATGAAGA-GAT
719090 CTGGTTATCT-ATGGTTGACACGGCTCATACGTGATGAAGAGAT
1 CTGGTTATCTAATGGTTGACACGGCTCATACGTGATGAAGAGAT
719133 CTGGT
1 CTGGT
719138 CTGGGGATGA
Statistics
Matches: 71, Mismatches: 18, Indels: 11
0.71 0.18 0.11
Matches are distributed among these distances:
42 1 0.01
43 30 0.42
44 8 0.11
45 4 0.06
46 27 0.38
47 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (44 bp):
CTGGTTATCTAATGGTTGACACGGCTCATACGTGATGAAGAGAT
Found at i:720250 original size:1 final size:1
Alignment explanation
Indices: 720246--720270 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
720236 TTTCTCATCA
720246 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
720271 AGGTGTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:733253 original size:25 final size:25
Alignment explanation
Indices: 733215--733338 Score: 223
Period size: 25 Copynumber: 5.0 Consensus size: 25
733205 AGTTAAGGGA
*
733215 TTAGGG-TTGAAACCCTAAATTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
733239 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
733264 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
733289 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
*
733314 TTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
733339 GGGTTGTTGG
Statistics
Matches: 97, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
24 6 0.06
25 91 0.94
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAAACTGAT
Found at i:733456 original size:11 final size:11
Alignment explanation
Indices: 733433--733481 Score: 55
Period size: 11 Copynumber: 4.3 Consensus size: 11
733423 GCAAAAATTG
733433 TAATAAT-AAA
1 TAATAATAAAA
733443 TAATAATAAAA
1 TAATAATAAAA
*
733454 TAATAATAAGA
1 TAATAATAAAA
733465 TAACGATAATAAAA
1 T-A--ATAATAAAA
733479 TAA
1 TAA
733482 CGGAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
10 7 0.21
11 15 0.45
12 1 0.03
13 1 0.03
14 9 0.27
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:748168 original size:18 final size:18
Alignment explanation
Indices: 748145--748196 Score: 95
Period size: 18 Copynumber: 2.9 Consensus size: 18
748135 ATCGAAAGGA
*
748145 ATTAGGGATTGAGAATAG
1 ATTAGGGATTGAGAAGAG
748163 ATTAGGGATTGAGAAGAG
1 ATTAGGGATTGAGAAGAG
748181 ATTAGGGATTGAGAAG
1 ATTAGGGATTGAGAAG
748197 TTACTTGAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.38, C:0.00, G:0.37, T:0.25
Consensus pattern (18 bp):
ATTAGGGATTGAGAAGAG
Found at i:760541 original size:42 final size:42
Alignment explanation
Indices: 760447--760547 Score: 150
Period size: 42 Copynumber: 2.4 Consensus size: 42
760437 AAGGCGTGGT
* *
760447 ACCTGCCCCGCGCTATATATAATTATAAAGGTCAGACGCGGT
1 ACCTGCCCCGCGCTATATATAATTATAAAGGTCAGACACGGC
760489 ACCTGCCCCGCGCTATATATAATTATAAAGGTCATGA-ACGGC
1 ACCTGCCCCGCGCTATATATAATTATAAAGGTCA-GACACGGC
* *
760531 CCCTGACCCGCGCTATA
1 ACCTGCCCCGCGCTATA
760548 CCCTACGTGG
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 52 0.96
43 2 0.04
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (42 bp):
ACCTGCCCCGCGCTATATATAATTATAAAGGTCAGACACGGC
Found at i:770100 original size:23 final size:23
Alignment explanation
Indices: 770072--770138 Score: 107
Period size: 23 Copynumber: 2.9 Consensus size: 23
770062 AATACATATA
770072 TGTCCCAAAGGACCACGTAGAAT
1 TGTCCCAAAGGACCACGTAGAAT
770095 TGTCCCAAAGGACCACGTAGAAT
1 TGTCCCAAAGGACCACGTAGAAT
* * *
770118 TGTCCCGAATGACCGCGTAGA
1 TGTCCCAAAGGACCACGTAGA
770139 CCCTCGACTC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.18
Consensus pattern (23 bp):
TGTCCCAAAGGACCACGTAGAAT
Found at i:770713 original size:26 final size:27
Alignment explanation
Indices: 770654--770713 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 27
770644 TCATATGTTC
770654 ATATT-TA-TTATAAAACACATAACTT
1 ATATTATATTTATAAAACACATAACTT
* * * *
770679 ATGTCATATTTAT-AAACATATATCTT
1 ATATTATATTTATAAAACACATAACTT
770705 ATATTATAT
1 ATATTATAT
770714 GTGCATATCA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
25 3 0.11
26 20 0.74
27 4 0.15
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (27 bp):
ATATTATATTTATAAAACACATAACTT
Found at i:772285 original size:3 final size:3
Alignment explanation
Indices: 772279--772334 Score: 58
Period size: 3 Copynumber: 17.7 Consensus size: 3
772269 CTGGGAGGAG
* * *
772279 GAA GAA GAA GGGA GAA GAA GAA GAA GGGA GAA GAA GAA GAA GGGA GAA
1 GAA GAA GAA -GAA GAA GAA GAA GAA -GAA GAA GAA GAA GAA -GAA GAA
772327 GAA GAA GA
1 GAA GAA GA
772335 GAGTTTTCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:772300 original size:16 final size:16
Alignment explanation
Indices: 772279--772334 Score: 112
Period size: 16 Copynumber: 3.5 Consensus size: 16
772269 CTGGGAGGAG
772279 GAAGAAGAAGGGAGAA
1 GAAGAAGAAGGGAGAA
772295 GAAGAAGAAGGGAGAA
1 GAAGAAGAAGGGAGAA
772311 GAAGAAGAAGGGAGAA
1 GAAGAAGAAGGGAGAA
772327 GAAGAAGA
1 GAAGAAGA
772335 GAGTTTTCCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (16 bp):
GAAGAAGAAGGGAGAA
Found at i:774004 original size:8 final size:8
Alignment explanation
Indices: 774003--774056 Score: 72
Period size: 8 Copynumber: 6.8 Consensus size: 8
773993 ATGTAGGTAT
*
774003 GTATGTAG
1 GTATGTAC
774011 GTATGTAC
1 GTATGTAC
774019 GTATGTAC
1 GTATGTAC
*
774027 GTATATAC
1 GTATGTAC
774035 GTATGTAC
1 GTATGTAC
* *
774043 ATATGTAT
1 GTATGTAC
774051 GTATGT
1 GTATGT
774057 GTATAATCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 40 1.00
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (8 bp):
GTATGTAC
Found at i:774008 original size:12 final size:12
Alignment explanation
Indices: 773991--774056 Score: 60
Period size: 12 Copynumber: 5.5 Consensus size: 12
773981 ATTTTAATAC
773991 GTATGTAGGTAT
1 GTATGTAGGTAT
774003 GTATGTAGGTAT
1 GTATGTAGGTAT
* * *
774015 GTACGTATGTAC
1 GTATGTAGGTAT
* *
774027 GTATATACGTAT
1 GTATGTAGGTAT
** *
774039 GTACATATGTAT
1 GTATGTAGGTAT
774051 GTATGT
1 GTATGT
774057 GTATAATCTA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.27, C:0.06, G:0.26, T:0.41
Consensus pattern (12 bp):
GTATGTAGGTAT
Found at i:778197 original size:44 final size:44
Alignment explanation
Indices: 778009--778873 Score: 265
Period size: 44 Copynumber: 19.6 Consensus size: 44
777999 AGTTGACGCT
* * * * *
778009 GATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATGTC
1 GATCCACCTCCTTCTGTGATGGAATCGAGCG-AAATAAAGATGTC
* * * ***
778054 GATCCACTTCCTTCTGTGATGGAAATCGAACGATATGCCGATG-C
1 GATCCACCTCCTTCTGTGATGG-AATCGAGCGAAATAAAGATGTC
* * * **** *
778098 TGATCTACCTCCTTCTATGATAGAATCGAGC-AAACGTTGACG-C
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATGTC
* * * * *
778141 TGATCCAACTCCTTCTGCGATGGATTTGAGCGAAATAAAAATGTC
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATGTC
* *** *
778186 GATCCACCTCCTTCTGTGATGGAATCGAAC-AAGATGTCGATGTT
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAA-ATAAAGATGTC
* * * *
778230 GATCTACCTCCTTCTGTGATAGAATCGAGC--AA-AAAGTTGACGC
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATG--TC
* * * *
778273 TGATCCAACTCCTTCTGTGATGGATTTGAGCGAAATAAAAATGTC
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATGTC
* * * * * ** *
778318 GATCCACCTCATTCTGTGATGGAGTCGAACGAGACATTGGTG-C
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATGTC
* * * * *
778361 TGATCTACCTCCTTCTGTGATAGAAACGAGC--AA-AAAGTTGGCGC
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGAT-G-TC
* ** * * * *
778405 TGATCCAACTTTTTCTGCGATGGATTTGAGCGAAATAAAAATGTC
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATGTC
* * ***
778450 GATCCACCTCATTCTGTGATGGAATCGAAC-AAGATGTCGATG-C
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAA-ATAAAGATGTC
* * * * * *
778493 TGATCTACCTCCTTCTGTGATAGAATCAAGC---CTAAAGTTGACGC
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATG--TC
* * * * *
778537 TGATCCAACTCCTTCTGCGATGGATTTC-AGCGAAATAAAAATATC
1 -GATCCACCTCCTTCTGTGATGGA-ATCGAGCGAAATAAAGATGTC
* * ** *** *
778582 AATCCACCTCCTTCTGCGATGGAATCGA-ATAAGATGTTGGTG-C
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAA-ATAAAGATGTC
* ** * * *
778625 TGATCTACCTCCTTCTGTGATATAAACGAGC--AA-AAAGTTGACGC
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATG--TC
* ** * * *
778669 TGATCCAACTCCTTCTACGATGGATTTGAGCGAAATAAAAATGTC
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATGTC
* * ***
778714 GATCCACCTCATTCTGTGATGGAATCGAAC-AAGATGTCGATG-C
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAA-ATAAAGATGTC
* * * * * * *
778757 TGATCTACCTCATTCTGTGATAGAATCAAGC---CTAAAGTTGACGC
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATG--TC
* * * * *
778801 TGATCCAACTCCTTCTGCGATGGATTTC-AGCGAAATAAAAATATC
1 -GATCCACCTCCTTCTGTGATGGA-ATCGAGCGAAATAAAGATGTC
* *
778846 AATCCACCTCCTTCTGCGATGGAATCGA
1 GATCCACCTCCTTCTGTGATGGAATCGA
778874 ATGAGATGTT
Statistics
Matches: 580, Mismatches: 193, Indels: 95
0.67 0.22 0.11
Matches are distributed among these distances:
41 17 0.03
42 4 0.01
43 49 0.08
44 420 0.72
45 53 0.09
46 13 0.02
47 24 0.04
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATAAAGATGTC
Found at i:778274 original size:132 final size:132
Alignment explanation
Indices: 777987--778948 Score: 1449
Period size: 132 Copynumber: 7.3 Consensus size: 132
777977 ATATGTGATT
*
777987 AATCGAGCAAGAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATG
1 AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCG-AAATAAAAATG
* * * * *
778052 TCGATCCACTTCCTTCTGTGATGGAAATCGAACGATATGCCGATGCTGATCTACCTCCTTCTATG
65 TCGATCCACCTCCTTCTGTGATGG-AATCGAACAAGATGTCGATGCTGATCTACCTCCTTCTGTG
778117 ATAG
129 ATAG
*
778121 AATCGAGC-AAACGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAATAAAAATGT
1 AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAATAAAAATGT
*
778185 CGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCGATGTTGATCTACCTCCTTCTGTGAT
66 CGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCGATGCTGATCTACCTCCTTCTGTGAT
778250 AG
131 AG
*
778252 AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGTGATGGATTTGAGCGAAATAAAAATGT
1 AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAATAAAAATGT
* * * ** * *
778317 CGATCCACCTCATTCTGTGATGGAGTCGAACGAGACATTGGTGCTGATCTACCTCCTTCTGTGAT
66 CGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCGATGCTGATCTACCTCCTTCTGTGAT
778382 AG
131 AG
* * **
778384 AAACGAGCAAAAAGTTGGCGCTGATCCAACTTTTTCTGCGATGGATTTGAGCGAAATAAAAATGT
1 AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAATAAAAATGT
*
778449 CGATCCACCTCATTCTGTGATGGAATCGAACAAGATGTCGATGCTGATCTACCTCCTTCTGTGAT
66 CGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCGATGCTGATCTACCTCCTTCTGTGAT
778514 AG
131 AG
* ** * *
778516 AATCAAGCCTAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTCAGCGAAATAAAAATAT
1 AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAATAAAAATGT
* * * * *
778581 CAATCCACCTCCTTCTGCGATGGAATCGAATAAGATGTTGGTGCTGATCTACCTCCTTCTGTGAT
66 CGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCGATGCTGATCTACCTCCTTCTGTGAT
*
778646 AT
131 AG
* *
778648 AAACGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTACGATGGATTTGAGCGAAATAAAAATGT
1 AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAATAAAAATGT
* *
778713 CGATCCACCTCATTCTGTGATGGAATCGAACAAGATGTCGATGCTGATCTACCTCATTCTGTGAT
66 CGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCGATGCTGATCTACCTCCTTCTGTGAT
778778 AG
131 AG
* ** * *
778780 AATCAAGCCTAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTCAGCGAAATAAAAATAT
1 AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAATAAAAATGT
* * ** * * *
778845 CAATCCACCTCCTTCTGCGATGGAATCGAATGAGATGTTGGTGTTGATCTACCTCCTTCTGTGAT
66 CGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCGATGCTGATCTACCTCCTTCTGTGAT
778910 AG
131 AG
* *
778912 AAACGAGCAAAAAGTTGACGTTGATCCAACTCCTTCT
1 AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCT
778949 CCTTCTGTGA
Statistics
Matches: 746, Mismatches: 81, Indels: 4
0.90 0.10 0.00
Matches are distributed among these distances:
131 47 0.06
132 649 0.87
133 42 0.06
134 8 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (132 bp):
AATCGAGCAAAAAGTTGACGCTGATCCAACTCCTTCTGCGATGGATTTGAGCGAAATAAAAATGT
CGATCCACCTCCTTCTGTGATGGAATCGAACAAGATGTCGATGCTGATCTACCTCCTTCTGTGAT
AG
Found at i:778975 original size:50 final size:49
Alignment explanation
Indices: 778897--779029 Score: 203
Period size: 50 Copynumber: 2.7 Consensus size: 49
778887 GTTGATCTAC
* *
778897 CTCCTTCTGTGATAGAAACGAGCAAAAAGTTGACGTTGATCCAACTCCTT
1 CTCCTTCTGTGATAGAATCGAGC-AAAAGTTGACGCTGATCCAACTCCTT
*
778947 CTCCTTCTGTGATAGAATCAAGCTAAAAGTTGACGCTGATCCAACTCCTT
1 CTCCTTCTGTGATAGAATCGAGC-AAAAGTTGACGCTGATCCAACTCCTT
*
778997 CTCATTCTGTGATAGAATCGAGCAAATAGTTGA
1 CTCCTTCTGTGATAGAATCGAGCAAA-AGTTGA
779030 ACAATCTCTT
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
49 3 0.04
50 73 0.96
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (49 bp):
CTCCTTCTGTGATAGAATCGAGCAAAAGTTGACGCTGATCCAACTCCTT
Found at i:779409 original size:37 final size:37
Alignment explanation
Indices: 779356--779517 Score: 215
Period size: 36 Copynumber: 4.5 Consensus size: 37
779346 TCAAGTGAAA
*
779356 TTTGTTTCGAGGGAAACTGTCTCTAA-AGAGACAAAAC
1 TTTGTTTCAAGGGAAACTGTCTC-AAGAGAGACAAAAC
*
779393 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAC
* * *
779430 -TTGTTTCAAGAGAAAATGTCTCAAGGGAGACAAAAC
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAC
* *
779466 -TTGTTTCAAGGGAAACGGTTTCAAGAGAGACAAAA-
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAC
*
779501 TTCGTTTCAAGGGAAAC
1 TTTGTTTCAAGGGAAAC
779518 GTTTTCAAAG
Statistics
Matches: 113, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
36 81 0.72
37 32 0.28
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (37 bp):
TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAC
Found at i:779439 original size:21 final size:21
Alignment explanation
Indices: 779382--779511 Score: 73
Period size: 21 Copynumber: 7.0 Consensus size: 21
779372 CTGTCTCTAA
779382 AGAGACAAAACTTTGTTTC-A-
1 AGAGACAAAAC-TTGTTTCAAG
*
779402 AGAG---AAAC-TGTCTCAAG
1 AGAGACAAAACTTGTTTCAAG
779419 AGAGACAAAACTTGTTTC-A-
1 AGAGACAAAACTTGTTTCAAG
*
779438 AGAG--AAAA--TGTCTCAAG
1 AGAGACAAAACTTGTTTCAAG
*
779455 GGAGACAAAACTTGTTTCAAG
1 AGAGACAAAACTTGTTTCAAG
*
779476 -G-G---AAAC-GGTTTCAAG
1 AGAGACAAAACTTGTTTCAAG
779491 AGAGACAAAA-TTCGTTTCAAG
1 AGAGACAAAACTT-GTTTCAAG
779512 GGAAACGTTT
Statistics
Matches: 84, Mismatches: 7, Indels: 37
0.66 0.05 0.29
Matches are distributed among these distances:
15 18 0.21
16 7 0.08
17 16 0.19
19 9 0.11
20 13 0.15
21 21 0.25
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.23
Consensus pattern (21 bp):
AGAGACAAAACTTGTTTCAAG
Found at i:779441 original size:36 final size:36
Alignment explanation
Indices: 779357--779581 Score: 209
Period size: 36 Copynumber: 6.4 Consensus size: 36
779347 CAAGTGAAAT
* *
779357 TTGTTTCGAGGGAAACTGTCTCTAA-AGAGACAAAAC
1 TTGTTTCAAGAGAAACTGTCTC-AAGAGAGACAAAAC
779393 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
1 -TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
* *
779430 TTGTTTCAAGAGAAAATGTCTCAAGGGAGACAAAAC
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
* * *
779466 TTGTTTCAAGGGAAACGGTTTCAAGAGAGACAAAA-
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
* * ***
779501 TTCGTTTCAAGGGAAAC-GTTTTC-A-A-AG--TTTA-
1 TT-GTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAAC
* *
779532 -TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAAT
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
*
779567 TTGTTTCAAAAGAAA
1 TTGTTTCAAGAGAAA
779582 TTGACTCATG
Statistics
Matches: 158, Mismatches: 19, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
29 16 0.10
30 3 0.02
31 1 0.01
32 2 0.01
33 2 0.01
34 2 0.01
35 4 0.03
36 97 0.61
37 31 0.20
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (36 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
Found at i:779647 original size:36 final size:37
Alignment explanation
Indices: 779598--779673 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
779588 CATGCTTTTG
779598 TTTTGAGAGAAAA-TGTCTCAA-AAGAGACAAAACTTA
1 TTTTGAGAGAAAATTGTCTCAAGAA-AGACAAAACTTA
*
779634 TTTTGAGTA-AAAATTGTCTCAAGAAAGACAAAATTTA
1 TTTTGAG-AGAAAATTGTCTCAAGAAAGACAAAACTTA
779671 TTT
1 TTT
779674 CAAGGGAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
36 11 0.31
37 23 0.64
38 2 0.06
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (37 bp):
TTTTGAGAGAAAATTGTCTCAAGAAAGACAAAACTTA
Found at i:779742 original size:50 final size:51
Alignment explanation
Indices: 779680--779783 Score: 149
Period size: 51 Copynumber: 2.1 Consensus size: 51
779670 ATTTCAAGGG
* *
779680 AAACAATCTCAAAGA-TTGGTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
1 AAACAATCTCAAAGATTTGATGTTTCAAGAGAAACTGTCTCAAGAGAGACA
* *
779730 AAACATAT-TCAAAGATTTTATGTTTCAAGAGAAACTGTCTCAAGAGAGATA
1 AAACA-ATCTCAAAGATTTGATGTTTCAAGAGAAACTGTCTCAAGAGAGACA
779781 AAA
1 AAA
779784 TCTTCTGTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
50 12 0.25
51 36 0.75
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.25
Consensus pattern (51 bp):
AAACAATCTCAAAGATTTGATGTTTCAAGAGAAACTGTCTCAAGAGAGACA
Found at i:779804 original size:39 final size:39
Alignment explanation
Indices: 779750--780023 Score: 431
Period size: 39 Copynumber: 7.0 Consensus size: 39
779740 AAAGATTTTA
* * * *
779750 TGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
779789 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
779828 TATTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
779867 TATTTCGAGGGAAACTATCTCAAGCGAGATAAAACCTTC
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
779906 TGTTTCGAGGGAAACTATCTCAAGCGAGACAAAACCTTC
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
779945 TGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
779984 TATTTCAAGGGAAACTATATCAAGCGAGATAAAATCTTC
1 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
780023 T
1 T
780024 TTAAAATAAT
Statistics
Matches: 222, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 222 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (39 bp):
TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
Found at i:780116 original size:76 final size:76
Alignment explanation
Indices: 780026--780204 Score: 200
Period size: 76 Copynumber: 2.3 Consensus size: 76
780016 AATCTTCTTT
* * *
780026 AAAATAATCTTGAGTGAAATGAAAT-GTCTTCTTTTAAGTAAAAAATGTCTCAAGTGAGACAAA-
1 AAAACAATCTTGAGTGAAAT-AAATCGTCTTCTTTCAAGTAAAAAATGTCTCAAGCGAGACAAAG
*
780089 TCTTGTTTTAAGA
65 TC-TGTTCTAAGA
* * * * *
780102 AAAACAATCTTGAGTGAAATAAATCTTCTTGTTTCGAGTAAATACTGTCTCAAGCGAGACAAAGT
1 AAAACAATCTTGAGTGAAATAAATCGTCTTCTTTCAAGTAAAAAATGTCTCAAGCGAGACAAAGT
780167 CTGTTCTAAGAAA
66 CTGTTCTAAG--A
** *
780180 AAAACAATCTCAAGTGAGATAAATC
1 AAAACAATCTTGAGTGAAATAAATC
780205 CTCTGTATTA
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
75 4 0.05
76 58 0.67
77 2 0.02
78 23 0.26
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (76 bp):
AAAACAATCTTGAGTGAAATAAATCGTCTTCTTTCAAGTAAAAAATGTCTCAAGCGAGACAAAGT
CTGTTCTAAGA
Found at i:781573 original size:8 final size:8
Alignment explanation
Indices: 781560--781614 Score: 60
Period size: 8 Copynumber: 6.9 Consensus size: 8
781550 GTCTCTCTTT
781560 TTTTTTTC
1 TTTTTTTC
781568 TTTTTTTC
1 TTTTTTTC
781576 -TTTTTTC
1 TTTTTTTC
781583 ATTTCTTTT-
1 -TTT-TTTTC
*
781592 TTTTTTGC
1 TTTTTTTC
781600 TTTTTTTC
1 TTTTTTTC
*
781608 TATTTTT
1 TTTTTTT
781615 ATGTCTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
7 10 0.25
8 24 0.60
9 2 0.05
10 4 0.10
ACGTcount: A:0.04, C:0.11, G:0.02, T:0.84
Consensus pattern (8 bp):
TTTTTTTC
Found at i:781574 original size:12 final size:12
Alignment explanation
Indices: 781557--781606 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
781547 TTCGTCTCTC
*
781557 TTTTTTT-TTTC
1 TTTTTTTCTTTT
781568 TTTTTTTCTTTT
1 TTTTTTTCTTTT
**
781580 TTCATTTCTTTT
1 TTTTTTTCTTTT
*
781592 TTTTTTGCTTTT
1 TTTTTTTCTTTT
781604 TTT
1 TTT
781607 CTATTTTTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
11 7 0.22
12 25 0.78
ACGTcount: A:0.02, C:0.10, G:0.02, T:0.86
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:781587 original size:20 final size:19
Alignment explanation
Indices: 781555--781594 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
781545 CTTTCGTCTC
*
781555 TCTTTTTTTTTTCTTTTTT
1 TCTTTTTTATTTCTTTTTT
781574 TCTTTTTTCATTTCTTTTTT
1 TCTTTTTT-ATTTCTTTTTT
781594 T
1 T
781595 TTTGCTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (19 bp):
TCTTTTTTATTTCTTTTTT
Found at i:781594 original size:33 final size:33
Alignment explanation
Indices: 781530--781626 Score: 101
Period size: 32 Copynumber: 3.0 Consensus size: 33
781520 GATTGATCGA
* * *
781530 TTTTC-TTTCTTCTTTCTTTCGTCTCTCTTTTTT
1 TTTTCTTTTTTTCTTT-TTTCATCTCTTTTTTTT
*
781563 TTTTCTTTTTTTCTTTTTTCATTTC-TTTTTTT
1 TTTTCTTTTTTTCTTTTTTCATCTCTTTTTTTT
* *
781595 TTTGCTTTTTTTCTATTTTT-ATGTCTTTTTTT
1 TTTTCTTTTTTTCT-TTTTTCATCTCTTTTTTT
781627 GTTATATCTT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
32 23 0.42
33 23 0.42
34 9 0.16
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.78
Consensus pattern (33 bp):
TTTTCTTTTTTTCTTTTTTCATCTCTTTTTTTT
Found at i:781603 original size:32 final size:31
Alignment explanation
Indices: 781555--781626 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 31
781545 CTTTCGTCTC
*
781555 TCTTTTTTTTTTCTTTTTTTCT-TTTTTCATT
1 TCTTTTTTTTTTCTTTTTTTCTATTTTT-ATG
781586 TCTTTTTTTTTTGCTTTTTTTCTATTTTTATG
1 TCTTTTTTTTTT-CTTTTTTTCTATTTTTATG
781618 TCTTTTTTT
1 TCTTTTTTT
781627 GTTATATCTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
31 12 0.32
32 21 0.55
33 5 0.13
ACGTcount: A:0.04, C:0.11, G:0.03, T:0.82
Consensus pattern (31 bp):
TCTTTTTTTTTTCTTTTTTTCTATTTTTATG
Found at i:783510 original size:23 final size:23
Alignment explanation
Indices: 783484--783534 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
783474 ATCTGTGCTC
783484 GCCTCTACACCAATTCTTAGTTA
1 GCCTCTACACCAATTCTTAGTTA
* *
783507 GCCTTTGCACCAATTCTTAGTTA
1 GCCTCTACACCAATTCTTAGTTA
783530 GCCTC
1 GCCTC
783535 ATCTTTTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (23 bp):
GCCTCTACACCAATTCTTAGTTA
Found at i:785732 original size:44 final size:41
Alignment explanation
Indices: 785663--785745 Score: 96
Period size: 42 Copynumber: 1.9 Consensus size: 41
785653 ATTAATCTAA
*
785663 AAAAATAAATTTAGAATTAAAAATTATGAAACAAAAAATAAAAT
1 AAAAATAAACTTA-AATTAAAAATTA--AAACAAAAAATAAAAT
*
785707 AAAAATAAACTT-AATTAAAATAATTAAAACAAAAGATAA
1 AAAAATAAACTTAAATT-AAA-AATTAAAACAAAAAATAA
785746 TAAAAACATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
42 16 0.46
43 3 0.09
44 16 0.46
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (41 bp):
AAAAATAAACTTAAATTAAAAATTAAAACAAAAAATAAAAT
Found at i:787908 original size:17 final size:17
Alignment explanation
Indices: 787886--787921 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
787876 TATTAAAAGC
787886 AGTATCAGTA-CTAAAAT
1 AGTATCAGTATC-AAAAT
787903 AGTATCAGTATCAAAAT
1 AGTATCAGTATCAAAAT
787920 AG
1 AG
787922 GTTACTGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.94
18 1 0.06
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (17 bp):
AGTATCAGTATCAAAAT
Found at i:789890 original size:2 final size:2
Alignment explanation
Indices: 789883--789934 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
789873 ACTTATAAAC
789883 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
789925 AT AT AT AT AT
1 AT AT AT AT AT
789935 TACTTCTATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:790895 original size:64 final size:63
Alignment explanation
Indices: 790772--790908 Score: 143
Period size: 64 Copynumber: 2.2 Consensus size: 63
790762 CCTTTAACAT
* * * * *
790772 GTGCATCAATGCACTACCCATGCATCGATACACCAATCACCTTCGATGTTTTTATTTTAAGGGG
1 GTGCATCGATGCACTACCCATGCATCGATACACCAATCACATTCGATGTTTTTACTTTAA-AGA
* * * **
790836 GTGCATCGATGCACT-CCTTATGCATCGATGCACTAATTGCATTCGATGTTTCTT-CTTTAAAGA
1 GTGCATCGATGCACTACC-CATGCATCGATACACCAATCACATTCGATGTTT-TTACTTTAAAGA
790899 GTGCATCGAT
1 GTGCATCGAT
790909 ACACATTGAA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
63 13 0.21
64 46 0.75
65 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (63 bp):
GTGCATCGATGCACTACCCATGCATCGATACACCAATCACATTCGATGTTTTTACTTTAAAGA
Found at i:794293 original size:23 final size:23
Alignment explanation
Indices: 794256--794320 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
794246 CAACTCGTAT
*
794256 AAATGCACCGGAGTGCCATGTAG
1 AAATGCACCGAAGTGCCATGTAG
* **
794279 AATTGCACCGAAGTGCCGCGTAG
1 AAATGCACCGAAGTGCCATGTAG
*
794302 AAATGCACCGTAGTGCCAT
1 AAATGCACCGAAGTGCCAT
794321 ATAAGATGTC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.29, C:0.25, G:0.28, T:0.18
Consensus pattern (23 bp):
AAATGCACCGAAGTGCCATGTAG
Found at i:795074 original size:2 final size:2
Alignment explanation
Indices: 795067--795175 Score: 218
Period size: 2 Copynumber: 54.5 Consensus size: 2
795057 ATTATACTAA
795067 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
795109 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
795151 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
795176 TATATATATA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 107 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:795180 original size:2 final size:2
Alignment explanation
Indices: 795175--795212 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
795165 ACACACACAC
795175 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
795213 TCTATTATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:796071 original size:19 final size:19
Alignment explanation
Indices: 796047--796093 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
796037 CTTTAACATG
796047 TGCATCGATGCACTACCCA
1 TGCATCGATGCACTACCCA
*
796066 TGCATCGATGTACTACCCA
1 TGCATCGATGCACTACCCA
796085 TGCATCGAT
1 TGCATCGAT
796094 ACACCAATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (19 bp):
TGCATCGATGCACTACCCA
Found at i:797743 original size:32 final size:31
Alignment explanation
Indices: 797707--797795 Score: 92
Period size: 29 Copynumber: 2.9 Consensus size: 31
797697 TAATAATTAC
797707 AATTATAATCAATCAATATAATATATAAATAA
1 AATTATAAT-AATCAATATAATATATAAATAA
* * *
797739 AATTATAATAAT-TATAT-CTATATAAATAC
1 AATTATAATAATCAATATAATATATAAATAA
* * *
797768 AATTAGAATAAATCATTATATTATATAA
1 AATTATAAT-AATCAATATAATATATAA
797796 TTATACTAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
29 18 0.38
30 7 0.15
31 6 0.13
32 16 0.34
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (31 bp):
AATTATAATAATCAATATAATATATAAATAA
Found at i:800496 original size:2 final size:2
Alignment explanation
Indices: 800491--800518 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
800481 TATATACAGG
800491 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
800519 ACTTGATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:810646 original size:32 final size:35
Alignment explanation
Indices: 810585--810651 Score: 104
Period size: 32 Copynumber: 2.0 Consensus size: 35
810575 TTGCTCTAGC
810585 AACTCTCTATATTCTATTAATATTAATGCTTAACA
1 AACTCTCTATATTCTATTAATATTAATGCTTAACA
*
810620 AACTCTCTATA-T-T-TTATTATTAATGCTTAACA
1 AACTCTCTATATTCTATTAATATTAATGCTTAACA
810652 TTCACCCTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
32 18 0.58
33 1 0.03
34 1 0.03
35 11 0.35
ACGTcount: A:0.36, C:0.16, G:0.03, T:0.45
Consensus pattern (35 bp):
AACTCTCTATATTCTATTAATATTAATGCTTAACA
Found at i:813542 original size:36 final size:36
Alignment explanation
Indices: 813495--813658 Score: 265
Period size: 36 Copynumber: 4.6 Consensus size: 36
813485 AATGGTGTTG
813495 AACATTGATACACGAATGTACAAAAGCTGATATAAT
1 AACATTGATACACGAATGTACAAAAGCTGATATAAT
**
813531 AACATTGATACACGAATGTACCGAAGCTGATATAAT
1 AACATTGATACACGAATGTACAAAAGCTGATATAAT
* *
813567 AACATTGTTACACGAATGTACAGAAGCTGATATAAT
1 AACATTGATACACGAATGTACAAAAGCTGATATAAT
* * *
813603 AACATTGATACATGAATGTACCAAAGCTGATATGAT
1 AACATTGATACACGAATGTACAAAAGCTGATATAAT
813639 AACATTGATACACGAATGTA
1 AACATTGATACACGAATGTA
813659 TCGAAGTTGA
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 118 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (36 bp):
AACATTGATACACGAATGTACAAAAGCTGATATAAT
Found at i:815455 original size:12 final size:12
Alignment explanation
Indices: 815438--815463 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
815428 GAGAAATCTA
815438 AAAAATACCCTT
1 AAAAATACCCTT
815450 AAAAATACCCTT
1 AAAAATACCCTT
815462 AA
1 AA
815464 TGAATCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAATACCCTT
Found at i:833761 original size:21 final size:19
Alignment explanation
Indices: 833736--833780 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
833726 AACTCGCCAA
833736 TTTTTTATAAAGTCATAATTG
1 TTTTTTATAAA--CATAATTG
* *
833757 TTTTTTTTAAACTTAATTG
1 TTTTTTATAAACATAATTG
833776 TTTTT
1 TTTTT
833781 CTAAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 12 0.55
21 10 0.45
ACGTcount: A:0.27, C:0.04, G:0.07, T:0.62
Consensus pattern (19 bp):
TTTTTTATAAACATAATTG
Done.