Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007909.1 Hibiscus syriacus cultivar Beakdansim tig00110303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3382237
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 17
Found at i:1169358 original size:22 final size:24
Alignment explanation
Indices: 1169315--1169358 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
1169305 AAAAAATTAA
1169315 GAGAGAAGAATATTTTCTAAGAAG
1 GAGAGAAGAATATTTTCTAAGAAG
1169339 GAGAGAA-AATATTTTC-AAGA
1 GAGAGAAGAATATTTTCTAAGA
1169359 GAAGAAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.20
23 9 0.45
24 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.23, T:0.25
Consensus pattern (24 bp):
GAGAGAAGAATATTTTCTAAGAAG
Found at i:1169361 original size:24 final size:24
Alignment explanation
Indices: 1169315--1169362 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
1169305 AAAAAATTAA
*
1169315 GAGAGAAGAATATTTTCTAAGAAG
1 GAGAGAAGAATATTTTCAAAGAAG
1169339 GAGAGAA-AATATTTTCAAGAGAAG
1 GAGAGAAGAATATTTTCAA-AGAAG
1169363 AAAACTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.48, C:0.04, G:0.25, T:0.23
Consensus pattern (24 bp):
GAGAGAAGAATATTTTCAAAGAAG
Found at i:1169537 original size:83 final size:83
Alignment explanation
Indices: 1169421--1169576 Score: 258
Period size: 83 Copynumber: 1.9 Consensus size: 83
1169411 TCGAGGGAGT
* * * *
1169421 TTTACTCCATCTAAATCTCTTTTAATATCTAAATTTAAACATATAATAATATATTTTAAATTTAA
1 TTTACTCCAACAAAATATCTTTTAATATCTAAATTTAAACAGATAATAATATATTTTAAATTTAA
1169486 AATATTAACCCTGAGAGA
66 AATATTAACCCTGAGAGA
* *
1169504 TTTACTCCAACAAAATATCTTTTAATATTTAAATTTAAACAGATAATAATATCTTTTAAATTTAA
1 TTTACTCCAACAAAATATCTTTTAATATCTAAATTTAAACAGATAATAATATATTTTAAATTTAA
1169569 AATATTAA
66 AATATTAA
1169577 ACAAATATAC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.44, C:0.12, G:0.03, T:0.42
Consensus pattern (83 bp):
TTTACTCCAACAAAATATCTTTTAATATCTAAATTTAAACAGATAATAATATATTTTAAATTTAA
AATATTAACCCTGAGAGA
Found at i:1169914 original size:15 final size:17
Alignment explanation
Indices: 1169896--1169927 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
1169886 CCTCTTTTAA
1169896 AAATAA-AATAA-ATAG
1 AAATAAGAATAATATAG
1169911 AAATAAGAATAATATAG
1 AAATAAGAATAATATAG
1169928 TGAAGAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (17 bp):
AAATAAGAATAATATAG
Found at i:1171772 original size:20 final size:19
Alignment explanation
Indices: 1171747--1171795 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
1171737 AAACAATAAT
1171747 TTTTTCCTTTTTTATTCAAA
1 TTTTTCCTTTTTTATTC-AA
*
1171767 TTTTT-CTTCTTTTTTTCAA
1 TTTTTCCTT-TTTTATTCAA
1171786 TTTTTCCTTT
1 TTTTTCCTTT
1171796 ATATTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTTCCTTTTTTATTCAA
Found at i:1175722 original size:14 final size:15
Alignment explanation
Indices: 1175695--1175723 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1175685 GAAGATAAAT
1175695 AATTAAATAAATTTA
1 AATTAAATAAATTTA
1175710 AATTAAA-AAATTTA
1 AATTAAATAAATTTA
1175724 TTTAGTATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AATTAAATAAATTTA
Found at i:1185059 original size:19 final size:18
Alignment explanation
Indices: 1185037--1185078 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1185027 TGAACATAAT
1185037 AAATAATATTATTTATTAA
1 AAATAATA-TATTTATTAA
* *
1185056 AAATATTATATTTTTTAA
1 AAATAATATATTTATTAA
1185074 AAATA
1 AAATA
1185079 TCAGAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AAATAATATATTTATTAA
Found at i:1185131 original size:24 final size:23
Alignment explanation
Indices: 1185102--1185148 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
1185092 TTAATATTAT
1185102 TTATGTCATATTAATATTA-AAATA
1 TTATGTC-TA-TAATATTATAAATA
*
1185126 TTATGTCTATAATTTTATAAATA
1 TTATGTCTATAATATTATAAATA
1185149 AAAGTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 7 0.33
24 7 0.33
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (23 bp):
TTATGTCTATAATATTATAAATA
Found at i:1189288 original size:3 final size:3
Alignment explanation
Indices: 1189280--1189359 Score: 88
Period size: 3 Copynumber: 26.3 Consensus size: 3
1189270 ATGTTATTTA
* * * * *
1189280 TAT TAT TAT TAT TAT TAT AAT TAT TAT TAT TAT AAT TAT AAT AAT AAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
1189328 AAT AAT TAT TAT TAT TAT TAT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
1189360 TAATATTACA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
3 67 0.96
4 3 0.04
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:1202156 original size:9 final size:10
Alignment explanation
Indices: 1202140--1202170 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
1202130 TATTATGCTT
1202140 GAAAAAAAAA
1 GAAAAAAAAA
1202150 GAAAAAAAAA
1 GAAAAAAAAA
1202160 GAAAAAGAAAA
1 GAAAAA-AAAA
1202171 AGAGGAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 16 0.80
11 4 0.20
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:1202166 original size:16 final size:15
Alignment explanation
Indices: 1202141--1202171 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
1202131 ATTATGCTTG
1202141 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
1202156 AAAAGAAAAAGAAAAA
1 AAAA-AAAAAGAAAAA
1202172 GAGGAGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAAAA
Found at i:1203476 original size:84 final size:84
Alignment explanation
Indices: 1203330--1203961 Score: 1053
Period size: 84 Copynumber: 7.6 Consensus size: 84
1203320 CCATGTGCTC
* * *
1203330 ATAGTATCTTCTGGAAGTGTTTTTTGAGTTATCTGATATGGTTTGGTAAAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1203395 TGGAAGAATAATAGACTCA
66 TGGAAGAATAATAGACTCA
1203414 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
*
1203479 TGGAAGAATAAT-GTGCTC-
66 TGGAAGAATAATAG-ACTCA
**
1203497 ATAGCATCTTCTGGAAGTG-AATTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1203561 TGGAAGAATAATAGACTCA
66 TGGAAGAATAATAGACTCA
1203580 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1203645 TGGAAGAATAATAGACTCA
66 TGGAAGAATAATAGACTCA
1203664 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
*
1203729 TGGAAGAATAAT-GTGCTC-
66 TGGAAGAATAATAG-ACTCA
*
1203747 ATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
*
1203812 TGGAAGAATAAT-GTGCTC-
66 TGGAAGAATAATAG-ACTCA
* *
1203830 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
**
1203895 TGGAAGAGGAATAGACTCA
66 TGGAAGAATAATAGACTCA
* *
1203914 ATAGCATCTCCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
1203962 TGAAACCACA
Statistics
Matches: 521, Mismatches: 20, Indels: 14
0.94 0.04 0.03
Matches are distributed among these distances:
82 58 0.11
83 198 0.38
84 265 0.51
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.37
Consensus pattern (84 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
TGGAAGAATAATAGACTCA
Found at i:1203597 original size:166 final size:167
Alignment explanation
Indices: 1203322--1203961 Score: 1099
Period size: 166 Copynumber: 3.8 Consensus size: 167
1203312 AACAAATGCC
* * *
1203322 ATGTGCTCATAGTATCTTCTGGAAGTGTTTTTTGAGTTATCTGATATGGTTTGGTAAAACCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
1203387 ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
66 ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1203452 TGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
131 TGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
**
1203489 ATGTGCTCATAGCATCTTCTGGAAGTG-AATTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
1203553 ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
66 ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1203618 TGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
131 TGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
*
1203655 ATAG-ACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAA
1 AT-GTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAA
* *
1203719 TCATTGAATTTGGAAGAATAAT-GTGCTC-ATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTG
64 TCATTGAATTTGGAAGAATAATAG-ACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTG
1203782 ATCTGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
128 ATCTGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
* *
1203822 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
** * *
1203887 ATTGAATTTGGAAGAGGAATAGACTCAATAGCATCTCCTGGAAGTGTTCTTTGAGTTATCTGATT
66 ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1203952 TGGTTTGGTA
131 TGGTTTGGTA
1203962 TGAAACCACA
Statistics
Matches: 448, Mismatches: 18, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
166 218 0.49
167 172 0.38
168 58 0.13
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.37
Consensus pattern (167 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
TGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
Found at i:1203836 original size:250 final size:249
Alignment explanation
Indices: 1203322--1203961 Score: 1129
Period size: 250 Copynumber: 2.6 Consensus size: 249
1203312 AACAAATGCC
* * *
1203322 ATGTGCTCATAGTATCTTCTGGAAGTGTTTTTTGAGTTATCTGATATGGTTTGGTAAAACCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
1203387 ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
66 ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
*
1203452 TGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATAATGTGCTCATAGCATCTTCTGGAAGTGA
131 TGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATAATGTGCTCATAGCATCTTCTAGAAGTGA
1203517 ATTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
196 ATTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
*
1203571 ATAG-ACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAA
1 AT-GTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAA
1203635 TCATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGA
64 TCATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGA
1203700 TCTGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATAATGTGCTCATAGCATCTTCTAGAAGT
129 TCTGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATAATGTGCTCATAGCATCTTCTAGAAGT
**
1203765 GTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
194 G-AATTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
* *
1203822 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
** * *
1203887 ATTGAATTTGGAAGAGGAATAGACTCAATAGCATCTCCTGGAAGTGTTCTTTGAGTTATCTGATT
66 ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1203952 TGGTTTGGTA
131 TGGTTTGGTA
1203962 TGAAACCACA
Statistics
Matches: 373, Mismatches: 14, Indels: 7
0.95 0.04 0.02
Matches are distributed among these distances:
249 5 0.01
250 310 0.83
251 58 0.16
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.37
Consensus pattern (249 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
ATTGAATTTGGAAGAATAATAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
TGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATAATGTGCTCATAGCATCTTCTAGAAGTGA
ATTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATTTGGAAGAATA
Found at i:1204109 original size:115 final size:115
Alignment explanation
Indices: 1203907--1204228 Score: 547
Period size: 115 Copynumber: 2.8 Consensus size: 115
1203897 GAAGAGGAAT
1203907 AGACTCAATAGCATCTCCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTATGAAACCACA
1 AGACTCAATAGCATCTCCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTATGAAACCACA
*
1203972 GAACCAATCATTGGATTTGAAAGATGAATTTGCTCATAGTAGAGATAAGG
66 GAACCAATCATTGGATTTGAAAGATGAATTTGCTCATAGTAGAAATAAGG
* *
1204022 AGACTCAATAGCATCTCCTGGAAGTTTTCTTTGAGTTATCTAATTTGGTTTGGTATGAAACCACA
1 AGACTCAATAGCATCTCCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTATGAAACCACA
*
1204087 GAACCAATCATTGGATTTGAAAGATGAGTTTGCTCATAGTAGAAATAAGG
66 GAACCAATCATTGGATTTGAAAGATGAATTTGCTCATAGTAGAAATAAGG
* * * *
1204137 AGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA-GGAACTACA
1 AGACTCAATAGCATCTCCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTATGAAACCACA
* *
1204201 GAACCAATCATTGGAATTAAAAGATGAA
66 GAACCAATCATTGGATTTGAAAGATGAA
1204229 CTGCATGATC
Statistics
Matches: 194, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
114 32 0.16
115 162 0.84
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (115 bp):
AGACTCAATAGCATCTCCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTATGAAACCACA
GAACCAATCATTGGATTTGAAAGATGAATTTGCTCATAGTAGAAATAAGG
Found at i:1205129 original size:113 final size:113
Alignment explanation
Indices: 1204952--1205314 Score: 629
Period size: 113 Copynumber: 3.2 Consensus size: 113
1204942 TTCCAGTTCG
*
1204952 AGTTCATAATGAGAAGAACTCATCTGAATAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
* *
1205017 AACCTTTTGCTCGAATTCATCACTTGATGGATCAACTTTTCCAGAGAA
66 AACCTTTTGTTTGAATTCATCACTTGATGGATCAACTTTTCCAGAGAA
1205065 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1205130 AACCTTTTGTTTGAATTCATCACTTGATGGATCAACTTTTCCAGAGAA
66 AACCTTTTGTTTGAATTCATCACTTGATGGATCAACTTTTCCAGAGAA
1205178 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
* ** * * *
1205243 AACCTTTAGTTTGAATTCATCGTTTGATGGATCAACATTGCCAG-GTAG
66 AACCTTTTGTTTGAATTCATCACTTGATGGATCAACTTTTCCAGAG-AA
1205291 AGTTCATAATGAGAAGAACTCATC
1 AGTTCATAATGAGAAGAACTCATC
1205315 ATCTGAAGAA
Statistics
Matches: 240, Mismatches: 9, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
112 1 0.00
113 239 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (113 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
AACCTTTTGTTTGAATTCATCACTTGATGGATCAACTTTTCCAGAGAA
Found at i:1205327 original size:92 final size:93
Alignment explanation
Indices: 1205229--1205409 Score: 218
Period size: 95 Copynumber: 1.9 Consensus size: 93
1205219 GTTCATAATG
* * * ** * *
1205229 AGAAGAATTTGTTCAACCTTTAGTTTGAATTCATCGTTTGATGGATCAACATTGCCAGGTAGAGT
1 AGAAGAAATTGTTCAACCTTTAGCTTAAATTCATCACTCGATGAATCAACATTGCCAGGTAGAGT
*
1205294 TCATAATGAGAAGAACTCATCATCTGAAGA
66 TCATAATAAGAAGAACTCATCATCT--AGA
* * * * * *
1205324 AGAAGAAATTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGAATCAACATTTCCAGTTCGAGT
1 AGAAGAAATTGTTCAACCTTTAGCTTAAATTCATCACTCGATGAATCAACATTGCCAGGTAGAGT
1205389 TCATAATAAGAAGAACTCATC
66 TCATAATAAGAAGAACTCATC
1205410 TGAAGAAAGA
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
95 72 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (93 bp):
AGAAGAAATTGTTCAACCTTTAGCTTAAATTCATCACTCGATGAATCAACATTGCCAGGTAGAGT
TCATAATAAGAAGAACTCATCATCTAGA
Found at i:1205381 original size:208 final size:196
Alignment explanation
Indices: 1205115--1205654 Score: 589
Period size: 208 Copynumber: 2.7 Consensus size: 196
1205105 AGTTCATAAT
* * * * * *
1205115 GAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTGATGGATCAACTTTTCCAGAGAAAG
1 GAGAAGAATTTGTTCAACTTTTTGCTTAAATTCATCACTAGATGAATCAACATTTCCAGAGAAAG
* *
1205180 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAA
66 TTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
* * *
1205245 CCTTTAGTTTGAATTCATCGTTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAAC
131 CCTTTAGCTTGAA-T--TC-----AT-GATCAACATTACCAGGTAGAGTTAATAATGAGAAGAAC
1205310 TCATCATCTG
187 TCATCATCTG
* * * ***
1205320 AAGAAGAAGAAATTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGAATCAACATTTCCAGTTC
1 --G-AGAAGAATTTGTTCAACTTTTTGCTTAAATTCATCACTAGATGAATCAACATTTCCAGAGA
* *
1205385 GAGTTCATAATAAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
63 AAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * ** * *
1205450 CAACTTTTGGCTTGAATTCATGATCAGTATTACCAGTTAGAGTTAATAATGAGAAGAACTCGTCA
128 CAACCTTTAGCTTGAATTCATGATCAACATTACCAGGTAGAGTTAATAATGAGAAGAACTCATCA
1205515 TCTG
193 TCTG
* * ** *** * * *
1205519 GAGAAGAATTTATTCAACTTTTTATCACAAAAGGA-GA-TAGATCAGCATCAACCTTTCCAGAGA
1 GAGAAGAATTTGTTCAACTTTTT-GCTTAAATTCATCACTAGAT--GAATCAACATTTCCAGAGA
* * *
1205582 AAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAATGAGAAGAGCTTATT
63 AAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1205647 CAACCTTT
128 CAACCTTT
1205655 TGGATGACTC
Statistics
Matches: 283, Mismatches: 46, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
195 3 0.01
196 21 0.07
197 87 0.31
199 42 0.15
200 2 0.01
205 2 0.01
207 2 0.01
208 124 0.44
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (196 bp):
GAGAAGAATTTGTTCAACTTTTTGCTTAAATTCATCACTAGATGAATCAACATTTCCAGAGAAAG
TTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
CCTTTAGCTTGAATTCATGATCAACATTACCAGGTAGAGTTAATAATGAGAAGAACTCATCATCT
G
Found at i:1205893 original size:3 final size:3
Alignment explanation
Indices: 1205885--1205919 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
1205875 ATGTTATTTA
*
1205885 TAT TAT TAT TAT TAT TAT TAT TAA TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
1205920 TAATATTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:1210708 original size:21 final size:21
Alignment explanation
Indices: 1210683--1210730 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
1210673 CCTAATATTG
1210683 CAATGTCAAAATTAGGTGCAA
1 CAATGTCAAAATTAGGTGCAA
1210704 CAATGTCAAAATTAGGTGCAA
1 CAATGTCAAAATTAGGTGCAA
*
1210725 TAATGT
1 CAATGT
1210731 TTGAAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (21 bp):
CAATGTCAAAATTAGGTGCAA
Found at i:1215363 original size:21 final size:21
Alignment explanation
Indices: 1215338--1215385 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
1215328 CCTAATATTG
1215338 CAATGTCAAAATTAGGTGCAA
1 CAATGTCAAAATTAGGTGCAA
1215359 CAATGTCAAAATTAGGTGCAA
1 CAATGTCAAAATTAGGTGCAA
*
1215380 TAATGT
1 CAATGT
1215386 TTGAAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (21 bp):
CAATGTCAAAATTAGGTGCAA
Found at i:1216625 original size:3 final size:3
Alignment explanation
Indices: 1216617--1216641 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1216607 TATTCACATA
1216617 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
1216642 TTTATCTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:1218437 original size:10 final size:10
Alignment explanation
Indices: 1218422--1218447 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1218412 ATTATCGAGA
1218422 AAATAATAAT
1 AAATAATAAT
1218432 AAATAATAAT
1 AAATAATAAT
1218442 AAATAA
1 AAATAA
1218448 AAATTTTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AAATAATAAT
Found at i:1219379 original size:2 final size:2
Alignment explanation
Indices: 1219372--1219404 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1219362 TTATCCTTAT
1219372 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1219405 CTCTCTCCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1220901 original size:20 final size:20
Alignment explanation
Indices: 1220876--1221068 Score: 237
Period size: 20 Copynumber: 9.6 Consensus size: 20
1220866 GATGTTCCAG
* ** *
1220876 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
1220896 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
1220916 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
1220936 AATCGCAACGTGTATCTGTA
1 AATCGCAACGCGTATCCGTA
1220956 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
1220976 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
1220996 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
1221016 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGTATCCGT-A
1221037 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
1221057 AATCGCAACGCG
1 AATCGCAACGCG
1221069 ATTTTTAAAG
Statistics
Matches: 149, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
19 1 0.01
20 129 0.87
21 19 0.13
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:1221487 original size:33 final size:33
Alignment explanation
Indices: 1221448--1221518 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
1221438 TTCACTTAGA
*
1221448 TTTCATTTCGCGTTACGATTCTCTCGTTGTGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
1221481 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1221514 TTTCA
1 TTTCA
1221519 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:1221624 original size:21 final size:20
Alignment explanation
Indices: 1221598--1221704 Score: 93
Period size: 21 Copynumber: 5.5 Consensus size: 20
1221588 TGCAGAAGAG
*
1221598 TCGCAACGAGATAAATAAAAA
1 TCGCAACGAGA-AAATGAAAA
* **
1221619 TCGCAACGTGAAAATGACTA
1 TCGCAACGAGAAAATGAAAA
1221639 TCTGCAACGAGAAAAATGAAAA
1 TC-GCAACGAG-AAAATGAAAA
1221661 TCGCAACGAG---A-G--AA
1 TCGCAACGAGAAAATGAAAA
*
1221675 TCGCAACGCG-AAATGAAAA
1 TCGCAACGAGAAAATGAAAA
1221694 TCGCAACGAGA
1 TCGCAACGAGA
1221705 GAATCGCAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
14 11 0.16
16 2 0.03
17 2 0.03
19 11 0.16
20 8 0.12
21 25 0.36
22 10 0.14
ACGTcount: A:0.48, C:0.19, G:0.21, T:0.13
Consensus pattern (20 bp):
TCGCAACGAGAAAATGAAAA
Found at i:1221678 original size:14 final size:14
Alignment explanation
Indices: 1221659--1221715 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
1221649 GAAAAATGAA
1221659 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
1221673 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
1221692 AATCGCAACGAGAG
1 AATCGCAACGAGAG
1221706 AATCGCAACG
1 AATCGCAACG
1221716 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:1221690 original size:33 final size:33
Alignment explanation
Indices: 1221652--1221731 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
1221642 GCAACGAGAA
1221652 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1221685 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
**
1221718 AAACCAAAATCGCA
1 AAATGAAAATCGCA
1221732 TTGCGATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.47, C:0.23, G:0.21, T:0.09
Consensus pattern (33 bp):
AAATGAAAATCGCAACGAGAGAATCGCAACGCG
Found at i:1221749 original size:19 final size:19
Alignment explanation
Indices: 1221727--1221854 Score: 87
Period size: 19 Copynumber: 7.1 Consensus size: 19
1221717 GAAACCAAAA
*
1221727 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
1221746 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
1221760 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
1221779 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
1221793 TCTCGTTGCGATTTTCATTT
1 TCGCGTTGCGATTTTCA-TT
* ***
1221813 CTCTCGTTGCGACAGTCATT
1 -TCGCGTTGCGATTTTCATT
*
1221833 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
1221853 TC
1 TC
1221855 AACCAAAAGA
Statistics
Matches: 87, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
14 20 0.23
16 6 0.07
17 6 0.07
19 22 0.25
20 19 0.22
21 14 0.16
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:1221768 original size:14 final size:14
Alignment explanation
Indices: 1221749--1221805 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
1221739 TTTCATTTCG
1221749 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
1221763 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
1221782 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
1221796 CGTTGCGATT
1 CGTTGCGATT
1221806 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:1221774 original size:33 final size:33
Alignment explanation
Indices: 1221732--1221854 Score: 165
Period size: 33 Copynumber: 3.5 Consensus size: 33
1221722 CAAAATCGCA
1221732 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1221765 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
1221798 TTGCGATTTTCATTTCTCTCGTTGCGACAGTCATTCTCTCG
1 TTGCGATTTTCA-TT-TCGCGTT--G-C-G--ATTCTCTCG
1221839 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
1221855 AACCAAAAGA
Statistics
Matches: 81, Mismatches: 1, Indels: 10
0.88 0.01 0.11
Matches are distributed among these distances:
33 45 0.56
34 2 0.02
35 6 0.07
37 1 0.01
38 1 0.01
39 3 0.04
40 2 0.02
41 21 0.26
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:1221816 original size:21 final size:21
Alignment explanation
Indices: 1221790--1221854 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
1221780 CGCGTTGCGA
1221790 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
1221811 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
1221831 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
1221852 TTC
1 TTC
1221855 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:1223697 original size:93 final size:93
Alignment explanation
Indices: 1223538--1223946 Score: 800
Period size: 93 Copynumber: 4.4 Consensus size: 93
1223528 TAGATTGCTT
*
1223538 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1223603 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
1223631 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1223696 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
1223724 AGTAAATTTGTTCGGTTGCTGCCAATTATGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1223789 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
1223817 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1223882 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
1223910 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1223947 AATACCCTGA
Statistics
Matches: 313, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 313 1.00
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.45
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:1224100 original size:19 final size:19
Alignment explanation
Indices: 1224076--1224120 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
1224066 GCAACGAGAG
**
1224076 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAACCAA
1224095 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACCAA
1224114 AATCGCA
1 AATCGCA
1224121 TTGCGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.47, C:0.27, G:0.18, T:0.09
Consensus pattern (19 bp):
AATCGCAACGCGAAACCAA
Found at i:1224138 original size:19 final size:19
Alignment explanation
Indices: 1224116--1224288 Score: 150
Period size: 19 Copynumber: 9.6 Consensus size: 19
1224106 GAAACCAAAA
*
1224116 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
1224135 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
1224149 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
1224168 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
*
1224184 T--CATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
1224201 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
**
1224220 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
* *
1224239 TCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
1224258 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
1224278 TCGTGTTGCGA
1 TCGCGTTGCGA
1224289 AAGTAAACTA
Statistics
Matches: 126, Mismatches: 17, Indels: 21
0.77 0.10 0.13
Matches are distributed among these distances:
14 18 0.14
16 8 0.06
17 8 0.06
19 80 0.63
20 12 0.10
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:1224163 original size:33 final size:33
Alignment explanation
Indices: 1224119--1224213 Score: 163
Period size: 33 Copynumber: 2.9 Consensus size: 33
1224109 ACCAAAATCG
1224119 CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
1 CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
* * *
1224152 CGTTGCGATTTTCATTTCGCATTGCGATTCTGT
1 CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
1224185 CATTGCGATTTTCATTTCGCGTTGCGATT
1 CATTGCGATTTTCATTTCGCGTTGCGATT
1224214 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45
Consensus pattern (33 bp):
CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
Found at i:1224246 original size:38 final size:38
Alignment explanation
Indices: 1224116--1224288 Score: 159
Period size: 33 Copynumber: 4.8 Consensus size: 38
1224106 GAAACCAAAA
*
1224116 TCGCATTGCGATTTTCATTTCGCGTTGCGATTCTC---
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* *
1224151 T--CGTTGCGATTTTCATTTCGCATTGCGA-T-TC-TG
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* * **
1224184 T--CATTGCGATTTTCATTTCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
** *
1224220 TCGCGTTGCGATTTTGGTTTCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
* *
1224258 TCGCGTTGCGATTTTAAGTTTCGTGTTGCGA
1 TCGCGTTGCGATTTTCA-TTTCGCGTTGCGA
1224289 AAGTAAACTA
Statistics
Matches: 113, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
31 2 0.02
32 1 0.01
33 51 0.45
34 1 0.01
35 2 0.02
36 2 0.02
38 43 0.38
39 11 0.10
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCATT
Found at i:1226233 original size:14 final size:14
Alignment explanation
Indices: 1226214--1226249 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
1226204 ATTGTTTAAT
1226214 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
1226228 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
1226242 TGATTTGT
1 TGATTTGT
1226250 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:1226432 original size:20 final size:19
Alignment explanation
Indices: 1226356--1226454 Score: 127
Period size: 20 Copynumber: 5.4 Consensus size: 19
1226346 AAAAATGACT
1226356 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
1226375 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1226394 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
1226408 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
*
1226428 ATCGCAATTCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
1226448 ATCGCAA
1 ATCGCAA
1226455 CGAGAGAATC
Statistics
Matches: 71, Mismatches: 3, Indels: 11
0.84 0.04 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 1 0.01
17 3 0.04
19 27 0.38
20 29 0.41
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:1226455 original size:54 final size:53
Alignment explanation
Indices: 1226356--1226472 Score: 209
Period size: 54 Copynumber: 2.2 Consensus size: 53
1226346 AAAAATGACT
1226356 ATCGCAATGC-GAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
1226408 ATCGCAATGCGGAAATGAAAATCGCAATTCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1226462 ATCGCAATGCG
1 ATCGCAATGCG
1226473 ATTTTCATTT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
52 10 0.16
53 18 0.29
54 34 0.55
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (53 bp):
ATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:1226532 original size:53 final size:52
Alignment explanation
Indices: 1226469--1226738 Score: 388
Period size: 53 Copynumber: 5.1 Consensus size: 52
1226459 AGAATCGCAA
*
1226469 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTTGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
1226522 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
*
1226574 TGCGATTTTCATTTCGCTTTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
* *
1226627 TGTGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TCT-CG--T
*
1226685 TGCGATTTTCA--T-G--TTGGGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1226732 TGCGATT
1 TGCGATT
1226739 GTAATTTCCG
Statistics
Matches: 202, Mismatches: 8, Indels: 20
0.88 0.03 0.09
Matches are distributed among these distances:
47 8 0.04
49 2 0.01
50 2 0.01
51 3 0.01
52 60 0.30
53 107 0.53
54 3 0.01
55 3 0.01
56 3 0.01
58 11 0.05
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (52 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
Found at i:1226612 original size:72 final size:70
Alignment explanation
Indices: 1226485--1226724 Score: 253
Period size: 72 Copynumber: 3.4 Consensus size: 70
1226475 TTTCATTTCG
* * *
1226485 CATTGCGATTTTCATTTCCGCATTGCGATTCTC--TT-G--TTGCGATTTTCATTT-CGCATTGC
1 CATTGTGATTTGCATTT-CGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGC
1226544 GATTTT
65 GATTTT
* * *
1226550 CATT-TCGCA-TTGCGATTCTCTCGTTGCGATTTTCATTTCGCTTTGCGATTTTCATTTCCGCAT
1 CATTGT-G-ATTTGC-ATT-TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCAT
1226613 TGCGATTCTCT
62 TGCGATT-T-T
* *
1226624 CGTTGTGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCG
1 CATTGTGATTTGCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCG
1226689 ATTTT
66 ATTTT
* *
1226694 CATGTTGGGATTTTCATTTCGCATTGCGATT
1 CA--TTGTGATTTGCATTTCGCATTGCGATT
1226725 CTCTCGTTGC
Statistics
Matches: 147, Mismatches: 12, Indels: 25
0.80 0.07 0.14
Matches are distributed among these distances:
65 8 0.05
66 16 0.11
67 1 0.01
68 2 0.01
69 1 0.01
70 2 0.01
71 16 0.11
72 87 0.59
73 5 0.03
74 8 0.05
75 1 0.01
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (70 bp):
CATTGTGATTTGCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCG
ATTTT
Found at i:1226634 original size:105 final size:108
Alignment explanation
Indices: 1226469--1226738 Score: 405
Period size: 105 Copynumber: 2.5 Consensus size: 108
1226459 AGAATCGCAA
*
1226469 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTTGTTGCGATTTTCAT
1 TGCGATTTTCATTTCGC-TTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1226534 TTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TCT-CG-T
65 TTCGCATTGCGATTTTCATTTCGCATTGCGATTTCATCTCCGAT
*
1226574 TGCGATTTTCATTTCGCTTTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGTGATTTTCAT
1 TGCGATTTTCATTTCGC-TTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
*
1226639 TTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCAT
65 TTCGCATTGCGATTTTCATTTCGCATTGCGA-TTTCATCTCCG-AT
*
1226685 TGCGATTTTCA--T-G-TTGGGATTTTCATTT-CGCATTGCGATTCTCTCGTTGCGATT
1 TGCGATTTTCATTTCGCTTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATT
1226739 GTAATTTCCG
Statistics
Matches: 153, Mismatches: 6, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
105 118 0.77
106 14 0.09
107 3 0.02
108 3 0.02
109 3 0.02
111 12 0.08
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (108 bp):
TGCGATTTTCATTTCGCTTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCATT
TCGCATTGCGATTTTCATTTCGCATTGCGATTTCATCTCCGAT
Found at i:1229040 original size:12 final size:12
Alignment explanation
Indices: 1229023--1229047 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1229013 TCTTCGGGGA
1229023 CTTTTTCTTCTT
1 CTTTTTCTTCTT
1229035 CTTTTTCTTCTT
1 CTTTTTCTTCTT
1229047 C
1 C
1229048 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:1229256 original size:24 final size:24
Alignment explanation
Indices: 1229222--1229268 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1229212 CTGAAACATC
1229222 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
1229246 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
1229269 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:1229989 original size:20 final size:20
Alignment explanation
Indices: 1229961--1230189 Score: 235
Period size: 20 Copynumber: 11.4 Consensus size: 20
1229951 AAATTTCAGT
* * *
1229961 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
1229981 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
1230001 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
1230021 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
1230041 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
1230061 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
1230081 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* * *
1230101 GTTGCTATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
* *
1230121 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
1230141 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
1230161 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
1230181 GTTGCGATT
1 GTTGCGATT
1230190 CTTGAAAATC
Statistics
Matches: 181, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
20 180 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:1230242 original size:21 final size:20
Alignment explanation
Indices: 1230157--1230254 Score: 81
Period size: 21 Copynumber: 4.8 Consensus size: 20
1230147 ATTTATGTGT
* *
1230157 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCAAAA
*
1230177 TCGCGTTGCGATTCTTGAAAA
1 TCGCGTTGCGATT-TTCAAAA
** **
1230198 TCGCAATGCGAATTTGT-ACTA
1 TCGCGTTGCG-ATTT-TCAAAA
*
1230219 TCGCATTGCGATTTTCAAGAA
1 TCGCGTTGCGATTTTCAA-AA
1230240 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
1230255 GGAAACTGAT
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
19 1 0.02
20 18 0.29
21 39 0.63
22 4 0.06
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCAAAA
Found at i:1230250 original size:42 final size:43
Alignment explanation
Indices: 1230157--1230255 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
1230147 ATTTATGTGT
* *
1230157 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTCTTGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTCTTCAAAA
**
1230198 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATT-TTCAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTCTTCAA-AA
*
1230240 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
1230256 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 12 0.26
42 32 0.68
43 3 0.06
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTCTTCAAAA
Found at i:1231093 original size:23 final size:23
Alignment explanation
Indices: 1231047--1231094 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
1231037 TAAAAATTTA
* *
1231047 AAATTTTAAAGTGTTCAACGTAT
1 AAATTCTAAAGTGTTCAACATAT
*
1231070 AAATTCTAAAGTGTTCAATATAT
1 AAATTCTAAAGTGTTCAACATAT
1231093 AA
1 AA
1231095 TTATAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (23 bp):
AAATTCTAAAGTGTTCAACATAT
Found at i:1231101 original size:22 final size:22
Alignment explanation
Indices: 1231047--1231101 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
1231037 TAAAAATTTA
*
1231047 AAATTTTAAAGTGTTCAACGTAT
1 AAATTATAAAGTGTTCAAC-TAT
*
1231070 AAATTCTAAAGTGTTCAA-TAT
1 AAATTATAAAGTGTTCAACTAT
1231091 ATAATTATAAA
1 A-AATTATAAA
1231102 TTAGTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 4 0.14
22 8 0.28
23 17 0.59
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.38
Consensus pattern (22 bp):
AAATTATAAAGTGTTCAACTAT
Found at i:1232056 original size:16 final size:16
Alignment explanation
Indices: 1232035--1232068 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1232025 GATTGGTGAG
*
1232035 AAAATATATTAAATTA
1 AAAATATATTAAAATA
*
1232051 AAAATATTTTAAAATA
1 AAAATATATTAAAATA
1232067 AA
1 AA
1232069 TTGAATCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATATATTAAAATA
Found at i:1233671 original size:22 final size:21
Alignment explanation
Indices: 1233619--1233678 Score: 95
Period size: 20 Copynumber: 2.9 Consensus size: 21
1233609 GATTTCTGGG
1233619 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAATCGGTACCCATT
1233640 CAA-GGGAATCGGTACCCATT
1 CAAGGGGAATCGGTACCCATT
*
1233660 CAATGGGGAATCGATACCC
1 CAA-GGGGAATCGGTACCC
1233679 CCCTCAAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 20 0.56
21 3 0.08
22 13 0.36
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.18
Consensus pattern (21 bp):
CAAGGGGAATCGGTACCCATT
Found at i:1233758 original size:23 final size:22
Alignment explanation
Indices: 1233714--1233758 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
1233704 AATCTCATAG
*
1233714 GGGAACCGATTCCCCCACAGGA
1 GGGAACCGATTCCCCCAAAGGA
1233736 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATTCCCCC-AAAGGA
1233759 AAATTGTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.29, C:0.33, G:0.27, T:0.11
Consensus pattern (22 bp):
GGGAACCGATTCCCCCAAAGGA
Found at i:1234217 original size:20 final size:20
Alignment explanation
Indices: 1234192--1234237 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
1234182 ATAAGTCGAG
1234192 AGATGTAGGGAAATAGAAAT
1 AGATGTAGGGAAATAGAAAT
1234212 AGATGTAGGGAAATAGAAAT
1 AGATGTAGGGAAATAGAAAT
*
1234232 ATATGT
1 AGATGT
1234238 TTATAAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (20 bp):
AGATGTAGGGAAATAGAAAT
Found at i:1235208 original size:23 final size:23
Alignment explanation
Indices: 1235173--1235264 Score: 141
Period size: 23 Copynumber: 4.0 Consensus size: 23
1235163 CATTATTATA
*
1235173 TGGCACTACGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
*
1235196 CGGCAC-TCTGGTGCAATTCTACG
1 TGGCACTTC-GGTGCAATTCTACG
1235219 TGGCACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
*
1235242 TGGCACTTCGGTGCAATTATACG
1 TGGCACTTCGGTGCAATTCTACG
1235265 AGCTGTGGTG
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
22 1 0.02
23 60 0.95
24 2 0.03
ACGTcount: A:0.20, C:0.26, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:1251974 original size:19 final size:17
Alignment explanation
Indices: 1251952--1251991 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
1251942 ATATGATGAT
1251952 ATAATAAAAGGTATTAATG
1 ATAATAAAAGG-A-TAATG
*
1251971 ATAATAATAGGATAATG
1 ATAATAAAAGGATAATG
1251988 ATAA
1 ATAA
1251992 GGAAGAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 1 0.05
19 10 0.50
ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30
Consensus pattern (17 bp):
ATAATAAAAGGATAATG
Found at i:1252444 original size:11 final size:11
Alignment explanation
Indices: 1252428--1252462 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
1252418 TTTTTACGAA
1252428 AGTACTATAGC
1 AGTACTATAGC
*
1252439 AGTACTATAGT
1 AGTACTATAGC
*
1252450 AGTACTGTAGC
1 AGTACTATAGC
1252461 AG
1 AG
1252463 GTGAATCAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (11 bp):
AGTACTATAGC
Found at i:1252581 original size:21 final size:19
Alignment explanation
Indices: 1252542--1252593 Score: 50
Period size: 21 Copynumber: 2.6 Consensus size: 19
1252532 GTACTGTTTA
* **
1252542 TTACTGTTCATACGGTATT
1 TTACTATTCATACCATATT
1252561 GTTCACTATTCATACCATATT
1 -TT-ACTATTCATACCATATT
*
1252582 TTACTGTTCATA
1 TTACTATTCATA
1252594 AAATGTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 9 0.33
20 4 0.15
21 14 0.52
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (19 bp):
TTACTATTCATACCATATT
Found at i:1253857 original size:64 final size:66
Alignment explanation
Indices: 1253732--1253877 Score: 199
Period size: 64 Copynumber: 2.2 Consensus size: 66
1253722 TTTTTCAGAG
* * *
1253732 TGATGCACCGATGCACCAATCCATGCATCGATGCACCATAAAATATTTTGAAACATCGAATGCAT
1 TGATGCATCGATGCACCAAGCCATGCATCGATGCACCATAAAATATTTTGAAACATCGAATGCAC
1253797 T
66 T
* ** *
1253798 TGATGCATCGATGCACC-AGCCATTCATCGATGCACTC-T-GGATATTTTGAAACATTGAATGCA
1 TGATGCATCGATGCACCAAGCCATGCATCGATGCAC-CATAAAATATTTTGAAACATCGAATGCA
1253860 CT
65 CT
1253862 TGATGCATCGATGCAC
1 TGATGCATCGATGCAC
1253878 TCTTAGTGCA
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
64 38 0.53
65 17 0.24
66 17 0.24
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (66 bp):
TGATGCATCGATGCACCAAGCCATGCATCGATGCACCATAAAATATTTTGAAACATCGAATGCAC
T
Found at i:1253893 original size:64 final size:62
Alignment explanation
Indices: 1253774--1253896 Score: 158
Period size: 64 Copynumber: 1.9 Consensus size: 62
1253764 GCACCATAAA
* * *
1253774 ATATTTTGAAACATCGAATGCATTTGATGCATCGATGCACCAGCCATTCATCGATGCACTCTGG
1 ATATTTTGAAACATCGAATGCACTTGATGCATCGATGCACCAG-C-TGCACCGATGCACTCTGG
*
1253838 ATATTTTGAAACATTGAATGCACTTGATGCATCGATGCACTCTTAG-TGCACCGATGCAC
1 ATATTTTGAAACATCGAATGCACTTGATGCATCGATGCAC-C--AGCTGCACCGATGCAC
1253897 GAAGGGTCCA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
64 49 0.94
65 1 0.02
67 2 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (62 bp):
ATATTTTGAAACATCGAATGCACTTGATGCATCGATGCACCAGCTGCACCGATGCACTCTGG
Found at i:1262523 original size:64 final size:66
Alignment explanation
Indices: 1262400--1262545 Score: 217
Period size: 64 Copynumber: 2.2 Consensus size: 66
1262390 TTTTTCAGAG
* * * *
1262400 TGATGCACCGATGCACCAATCCATGCATCGATGCACCATGAATTATTTTGAAACATCGAATGCAT
1 TGATGCATCGATGCACCAAGCCATGCATCGATGCACCATGAACTATTTTGAAACATCGAATGCAC
1262465 T
66 T
*
1262466 TGATGCATCGATGCACC-AGCCATGCATCGATGCACTC-TG-GCTATTTTGAAACATCGAATGCA
1 TGATGCATCGATGCACCAAGCCATGCATCGATGCAC-CATGAACTATTTTGAAACATCGAATGCA
1262528 CT
65 CT
1262530 TGATGCATCGATGCAC
1 TGATGCATCGATGCAC
1262546 TCTTAGTGCA
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
64 38 0.51
65 19 0.26
66 17 0.23
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (66 bp):
TGATGCATCGATGCACCAAGCCATGCATCGATGCACCATGAACTATTTTGAAACATCGAATGCAC
T
Found at i:1262561 original size:64 final size:62
Alignment explanation
Indices: 1262443--1262563 Score: 172
Period size: 64 Copynumber: 1.9 Consensus size: 62
1262433 CACCATGAAT
* *
1262443 TATTTTGAAACATCGAATGCATTTGATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGC
1 TATTTTGAAACATCGAATGCACTTGATGCATCGATGCACCAG-C-TGCACCGATGCACTCTGGC
1262507 TATTTTGAAACATCGAATGCACTTGATGCATCGATGCACTCTTAG-TGCACCGATGCA
1 TATTTTGAAACATCGAATGCACTTGATGCATCGATGCAC-C--AGCTGCACCGATGCA
1262564 TTAAGGGTCC
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
64 49 0.94
65 1 0.02
67 2 0.04
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (62 bp):
TATTTTGAAACATCGAATGCACTTGATGCATCGATGCACCAGCTGCACCGATGCACTCTGGC
Found at i:1265334 original size:19 final size:19
Alignment explanation
Indices: 1265315--1265356 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
1265305 AGTTATTAAT
1265315 TTTAA-TTTAAGTTTAGAA
1 TTTAACTTTAAGTTTAGAA
* *
1265333 TTAAACTTTAGGTTTAGAA
1 TTTAACTTTAAGTTTAGAA
1265352 CTTTA
1 -TTTA
1265357 TTAATTAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 4 0.21
19 12 0.63
20 3 0.16
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.48
Consensus pattern (19 bp):
TTTAACTTTAAGTTTAGAA
Found at i:1267682 original size:30 final size:30
Alignment explanation
Indices: 1267633--1267706 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 30
1267623 TGGTTTTTTA
* *
1267633 GAAAATAATTTT-TGTAAAAT-AGATTACCT
1 GAAAATTATTTTACGTAAAATGA-ATTACCT
1267662 GAAAATTATTTTACGTAAAATGAATTACCT
1 GAAAATTATTTTACGTAAAATGAATTACCT
* *
1267692 -AAAACTGTTTTACGT
1 GAAAATTATTTTACGT
1267707 TTTCTGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 24 0.62
30 14 0.36
31 1 0.03
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (30 bp):
GAAAATTATTTTACGTAAAATGAATTACCT
Found at i:1268186 original size:19 final size:18
Alignment explanation
Indices: 1268162--1268205 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
1268152 GAGTATATAT
1268162 TAATATAATATTAAAAATA
1 TAATAT-ATATTAAAAATA
*
1268181 TAATAT-TATTAAAATTA
1 TAATATATATTAAAAATA
*
1268198 TATTATAT
1 TAATATAT
1268206 GAGTATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 15 0.68
18 1 0.05
19 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATATATATTAAAAATA
Found at i:1268491 original size:42 final size:41
Alignment explanation
Indices: 1268397--1268491 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 41
1268387 TTATATTAGG
* *
1268397 AAAATTAATTACAACTATCAAACACAAAAAAATGTTTTCCGT
1 AAAA-TAATTACAACTATCAAACACAAAAAAATATTTTCCAT
*
1268439 AAAATCAATTACAACTATCAAACACAGGAAAAATATTTAT-CAT
1 AAAAT-AATTACAACTATCAAACACA-AAAAAATATTT-TCCAT
*
1268482 TAAATAATTA
1 AAAATAATTA
1268492 AACGACATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
41 1 0.02
42 29 0.63
43 15 0.33
44 1 0.02
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (41 bp):
AAAATAATTACAACTATCAAACACAAAAAAATATTTTCCAT
Found at i:1277527 original size:20 final size:20
Alignment explanation
Indices: 1277502--1277554 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
1277492 ATGTAATTTG
1277502 TGTATCGATGCACGGGGTAA
1 TGTATCGATGCACGGGGTAA
*
1277522 TGTATCGATGCACGGGGTAG
1 TGTATCGATGCACGGGGTAA
*
1277542 TGCATCGATGCAC
1 TGTATCGATGCAC
1277555 ATGTTAAGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.25
Consensus pattern (20 bp):
TGTATCGATGCACGGGGTAA
Found at i:1284177 original size:19 final size:19
Alignment explanation
Indices: 1284153--1284190 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1284143 TTCTTCTCGT
1284153 GTAACTATTTACTCTTGAA
1 GTAACTATTTACTCTTGAA
1284172 GTAACTATTTACTCTTGAA
1 GTAACTATTTACTCTTGAA
1284191 TGAAATCTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (19 bp):
GTAACTATTTACTCTTGAA
Found at i:1284275 original size:2 final size:2
Alignment explanation
Indices: 1284268--1284292 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1284258 AATCTTGCCG
1284268 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1284293 TACATGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1285574 original size:43 final size:43
Alignment explanation
Indices: 1285526--1285611 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
1285516 AATTTACTCT
*
1285526 CTAAAATAACAATCCACAAATACA-CTAAACTAATATATTAAAA
1 CTAAAATAACAATCCACAAATACATC-AAACTAACATATTAAAA
1285569 CTAAAATAACAATCCACAAATACATCAAACTAACATATTAAAA
1 CTAAAATAACAATCCACAAATACATCAAACTAACATATTAAAA
1285612 AATTCTTCGA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
43 40 0.98
44 1 0.02
ACGTcount: A:0.58, C:0.20, G:0.00, T:0.22
Consensus pattern (43 bp):
CTAAAATAACAATCCACAAATACATCAAACTAACATATTAAAA
Found at i:1290230 original size:21 final size:21
Alignment explanation
Indices: 1290179--1290231 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
1290169 ATTATGACTA
1290179 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
* **
1290200 TCACGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
1290221 TCGCAATGCGA
1 TCGCAATGCGA
1290232 ATAAGTAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:1290246 original size:20 final size:21
Alignment explanation
Indices: 1290221--1290272 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
1290211 TTTTCCCAAT
*
1290221 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
1290241 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
1290262 TCGCAATGCGA
1 TCGCAATGCGA
1290273 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:1290285 original size:41 final size:42
Alignment explanation
Indices: 1290240--1290370 Score: 144
Period size: 41 Copynumber: 3.2 Consensus size: 42
1290230 GAATAAGTAA
* ** *
1290240 ATCGCAACGCGAAT-TTGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATAATACAAAATCGCAACGCGATACTGACT
1290281 ATCGCAACGCG-ATAATACAAAATCGCAACGCGATACTGACT
1 ATCGCAACGCGAATAATACAAAATCGCAACGCGATACTGACT
* * ***
1290322 TTCGCAACGCG-ATACTA-ACTTTCGCAACGCGATACTGACT
1 ATCGCAACGCGAATAATACAAAATCGCAACGCGATACTGACT
*
1290362 TTCGCAACG
1 ATCGCAACG
1290371 TGATTCTGAC
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
40 31 0.39
41 49 0.61
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (42 bp):
ATCGCAACGCGAATAATACAAAATCGCAACGCGATACTGACT
Found at i:1290286 original size:20 final size:20
Alignment explanation
Indices: 1290262--1290435 Score: 206
Period size: 20 Copynumber: 8.7 Consensus size: 20
1290252 ATTTGGAAAA
* *
1290262 TCGCAATGCGATACTGACTA
1 TCGCAACGCGATACTGACTT
* **
1290282 TCGCAACGCGATAAT-ACAAAA
1 TCGCAACGCGATACTGAC--TT
1290303 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
*
1290323 TCGCAACGCGATACTAACTT
1 TCGCAACGCGATACTGACTT
1290343 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
* *
1290363 TCGCAACGTGATTCTGACTT
1 TCGCAACGCGATACTGACTT
*
1290383 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATACTGACTT
* * *
1290403 TCGCAACGAGATTCTGACTA
1 TCGCAACGCGATACTGACTT
*
1290423 TCGCAACGAGATA
1 TCGCAACGCGATA
1290436 ATACAGAATC
Statistics
Matches: 137, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
19 2 0.01
20 118 0.86
21 15 0.11
22 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:1290608 original size:12 final size:12
Alignment explanation
Indices: 1290589--1290622 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
1290579 CTCTCCGGCG
1290589 ACATCCGTTCCT
1 ACATCCGTTCCT
*
1290601 ATATCCGTTCCT
1 ACATCCGTTCCT
1290613 ACATCC-TTCC
1 ACATCCGTTCC
1290623 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:1291422 original size:12 final size:12
Alignment explanation
Indices: 1291405--1291429 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1291395 ATATAATCCT
1291405 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1291417 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1291429 G
1 G
1291430 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:1293736 original size:20 final size:20
Alignment explanation
Indices: 1293711--1293786 Score: 134
Period size: 20 Copynumber: 3.8 Consensus size: 20
1293701 CAACGGGGAA
*
1293711 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGGCT
1293731 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
1293751 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
*
1293771 ATCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
1293787 CGCAATGCGA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:1293739 original size:34 final size:34
Alignment explanation
Indices: 1293692--1293798 Score: 97
Period size: 40 Copynumber: 3.0 Consensus size: 34
1293682 GACATTCATT
*
1293692 TGACTATCACAACGGGGAAATCGCAACGCGAAAA
1 TGACTATCGCAACGGGGAAATCGCAACGCGAAAA
**
1293726 TGACTATCGCAACGCGAAAATGGCTATCGCAACGCGAAAA
1 TGACTATCGCAACG-G-----GGAAATCGCAACGCGAAAA
* * * *
1293766 TGGCTATCGCAACGAGAAAATCGCAATGCGAAA
1 TGACTATCGCAACGGGGAAATCGCAACGCGAAA
1293799 TGAAAATCGC
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
34 27 0.47
35 1 0.02
40 30 0.52
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.14
Consensus pattern (34 bp):
TGACTATCGCAACGGGGAAATCGCAACGCGAAAA
Found at i:1293829 original size:14 final size:14
Alignment explanation
Indices: 1293810--1293863 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
1293800 GAAAATCGCA
1293810 TTGCGATTTTCTCG
1 TTGCGATTTTCTCG
1293824 TTGCGATTTTCATTTCG
1 TTGCGATTTTC---TCG
*
1293841 CATTGCGATTCTCTCG
1 --TTGCGATTTTCTCG
1293857 TTGCGAT
1 TTGCGAT
1293864 AGTCAGTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.11, C:0.22, G:0.20, T:0.46
Consensus pattern (14 bp):
TTGCGATTTTCTCG
Found at i:1293829 original size:33 final size:33
Alignment explanation
Indices: 1293792--1293862 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 33
1293782 AAAATCGCAA
*
1293792 TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
1 TGCGAAATGAAAATCGCATTGCGATTCTCTCGT
** ** **
1293825 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGAAATGAAAATCGCATTGCGATTCTCTCGT
1293858 TGCGA
1 TGCGA
1293863 TAGTCAGTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (33 bp):
TGCGAAATGAAAATCGCATTGCGATTCTCTCGT
Found at i:1295484 original size:43 final size:42
Alignment explanation
Indices: 1295437--1295530 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
1295427 CCTCTTCAAC
* *
1295437 GATGACAGTAGCCTCTTGAACGGTGGTGG-GGGGACTCTTGAGG
1 GATGACAGGAGCCTCTTGAACGAT--TGGAGGGGACTCTTGAGG
* * *
1295480 GATGATAGGGGCCTCTTGAACGATTGGAGGGGATTCTTGAGG
1 GATGACAGGAGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
1295522 GATGACAGG
1 GATGACAGG
1295531 TGAGTCGGGC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 3 0.07
42 21 0.48
43 20 0.45
ACGTcount: A:0.21, C:0.14, G:0.41, T:0.23
Consensus pattern (42 bp):
GATGACAGGAGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
Found at i:1295826 original size:27 final size:25
Alignment explanation
Indices: 1295790--1295859 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
1295780 AAAATGCATC
1295790 ATAT-AACATTCCAGAAG-TAAGCACTT
1 ATATAAACATTCCAGAAGATAA-CA--T
* *
1295816 ATATAAACATT-AAAAAGGATAACAT
1 ATATAAACATTCCAGAA-GATAACAT
1295841 ATATAAACATTCCAGAAGA
1 ATATAAACATTCCAGAAGA
1295860 AGAATAGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
25 14 0.39
26 10 0.28
27 9 0.25
28 3 0.08
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.24
Consensus pattern (25 bp):
ATATAAACATTCCAGAAGATAACAT
Found at i:1295893 original size:20 final size:20
Alignment explanation
Indices: 1295868--1295920 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
1295858 GAAGAATAGT
*
1295868 TTACTTTCGCAACACGAAAC
1 TTACTTTCGCAACACGAAAA
1295888 TTACTTTCGCAACACGAAAA
1 TTACTTTCGCAACACGAAAA
* *
1295908 TGACTATCGCAAC
1 TTACTTTCGCAAC
1295921 GCGGAAATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.25
Consensus pattern (20 bp):
TTACTTTCGCAACACGAAAA
Found at i:1295928 original size:20 final size:20
Alignment explanation
Indices: 1295894--1295960 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
1295884 AAACTTACTT
* *
1295894 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
1295914 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
**
1295934 TCGCAACGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
1295953 TCGCAACG
1 TCGCAACG
1295961 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 15 0.37
20 26 0.63
ACGTcount: A:0.39, C:0.25, G:0.22, T:0.13
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:1295955 original size:19 final size:19
Alignment explanation
Indices: 1295894--1295998 Score: 85
Period size: 19 Copynumber: 5.7 Consensus size: 19
1295884 AAACTTACTT
* **
1295894 TCGCAACACGAAAATGACTA
1 TCGCAACGCG-AAATGAAAA
***
1295914 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
1295934 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
1295953 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
*
1295967 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
1295986 TCGCAACGCGAAA
1 TCGCAACGCGAAA
1295999 CACAAATCGC
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 29 0.41
20 25 0.35
21 1 0.01
ACGTcount: A:0.43, C:0.24, G:0.21, T:0.12
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:1296005 original size:19 final size:19
Alignment explanation
Indices: 1295933--1296009 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
1295923 GGAAATGGCT
*
1295933 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATCAAA
1295952 ATCGCAA--CG--A-CAAA
1 ATCGCAACGCGAAATCAAA
* *
1295966 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATCAAA
1295985 ATCGCAACGCGAAA-CACAA
1 ATCGCAACGCGAAATCA-AA
1296004 ATCGCA
1 ATCGCA
1296010 TTGCGATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
14 10 0.21
15 1 0.02
16 2 0.04
17 2 0.04
18 2 0.04
19 31 0.65
ACGTcount: A:0.47, C:0.25, G:0.18, T:0.10
Consensus pattern (19 bp):
ATCGCAACGCGAAATCAAA
Found at i:1296027 original size:19 final size:19
Alignment explanation
Indices: 1296005--1296080 Score: 99
Period size: 19 Copynumber: 4.3 Consensus size: 19
1295995 GAAACACAAA
1296005 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
1296024 TCGCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
1296043 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
1296059 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
1296076 TCGCA
1 TCGCA
1296081 CTACGATAGC
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
14 6 0.12
15 3 0.06
16 4 0.08
17 4 0.08
18 3 0.06
19 28 0.58
ACGTcount: A:0.13, C:0.21, G:0.20, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:1296683 original size:18 final size:18
Alignment explanation
Indices: 1296660--1296707 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
1296650 CGGGTCGATC
1296660 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
*
1296678 AGGTGATAGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
1296696 AGGTGATGGCTC
1 AGGTGATGGCTC
1296708 CCGAAGTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.12, G:0.46, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:1298027 original size:20 final size:20
Alignment explanation
Indices: 1298002--1298039 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1297992 AATAGTTTCT
1298002 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
1298022 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
1298040 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:1298345 original size:22 final size:22
Alignment explanation
Indices: 1298318--1298361 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
1298308 GATGGAGATA
1298318 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
1298340 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
1298362 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:1298576 original size:20 final size:20
Alignment explanation
Indices: 1298548--1298661 Score: 140
Period size: 20 Copynumber: 5.7 Consensus size: 20
1298538 GATTATGTAT
*
1298548 TATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
1298568 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
1298588 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
** *
1298608 TATCGCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
*
1298629 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
1298649 TATCGCATTGCGA
1 TATCGCGTTGCGA
1298662 TTTTCCCAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.04
20 63 0.77
21 14 0.17
22 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:1298665 original size:41 final size:41
Alignment explanation
Indices: 1298528--1298663 Score: 186
Period size: 41 Copynumber: 3.3 Consensus size: 41
1298518 CGCTTTGAAA
*
1298528 ATCGCATTGCGATTATGTATTATCTCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
* * *
1298569 ATCGCGTTGCGA--AAGTAAGTATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTATGT-ATTATCGCGTTGCGAAAGTCAGT
* * *
1298609 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
1298650 ATCGCATTGCGATT
1 ATCGCATTGCGATT
1298664 TTCCCAATTC
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 3 0.04
40 33 0.40
41 45 0.54
42 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (41 bp):
ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
Found at i:1298676 original size:41 final size:41
Alignment explanation
Indices: 1298528--1298683 Score: 138
Period size: 41 Copynumber: 3.8 Consensus size: 41
1298518 CGCTTTGAAA
* ** * * *
1298528 ATCGCATTGCGATTATGTATTATCTCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTCCAATATCGCGTTGCGATAGTCAGT
* *** *
1298569 ATCGCGTTGCGAAAGT--AAGTATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTCCAA-TATCGCGTTGCGATAGTCAGT
* ** *
1298609 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCATTGCGATTTTCCAATATCGCGTTGCGATAGTCAGT
1298650 ATCGCATTGCGATTTTCCCAAT-TCGCGTTGCGAT
1 ATCGCATTGCGATTTT-CCAATATCGCGTTGCGAT
1298684 TTACTTATTC
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 33 0.34
41 59 0.61
42 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (41 bp):
ATCGCATTGCGATTTTCCAATATCGCGTTGCGATAGTCAGT
Found at i:1298744 original size:21 final size:22
Alignment explanation
Indices: 1298695--1298744 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
1298685 TACTTATTCG
*
1298695 CATTGCG-AATTGGGAAAATCG
1 CATTGCGAAATTGGGAAAATCA
**
1298716 CAACGCGAAATT-GGAAAATCA
1 CATTGCGAAATTGGGAAAATCA
1298737 CATTGCGA
1 CATTGCGA
1298745 TAGTCATAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (22 bp):
CATTGCGAAATTGGGAAAATCA
Found at i:1299709 original size:19 final size:19
Alignment explanation
Indices: 1299685--1299723 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
1299675 TAGCAGAAGA
1299685 TCACTTATAAACCTTTACT
1 TCACTTATAAACCTTTACT
1299704 TCACTTATAAACCTTTACT
1 TCACTTATAAACCTTTACT
1299723 T
1 T
1299724 GGAGCAACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (19 bp):
TCACTTATAAACCTTTACT
Found at i:1312328 original size:10 final size:10
Alignment explanation
Indices: 1312301--1312337 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
1312291 CATCTTCTCA
*
1312301 TTCTTTTCAT
1 TTCTCTTCAT
1312311 TT-TCTTCAT
1 TTCTCTTCAT
1312320 TTCTCTTCAT
1 TTCTCTTCAT
1312330 TTCTCTTC
1 TTCTCTTC
1312338 TTCTCTTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.08, C:0.27, G:0.00, T:0.65
Consensus pattern (10 bp):
TTCTCTTCAT
Found at i:1312341 original size:8 final size:9
Alignment explanation
Indices: 1312298--1312344 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 9
1312288 TTTCATCTTC
*
1312298 TCATTCTTT
1 TCATTCTCT
*
1312307 TCATTTTCT
1 TCATTCTCT
1312316 TCATTTCTCT
1 TCA-TTCTCT
1312326 TCATTTCTCT
1 TCA-TTCTCT
1312336 TC-TTCTCT
1 TCATTCTCT
1312344 T
1 T
1312345 AGACTTCATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.21
9 10 0.29
10 17 0.50
ACGTcount: A:0.09, C:0.28, G:0.00, T:0.64
Consensus pattern (9 bp):
TCATTCTCT
Found at i:1312341 original size:18 final size:18
Alignment explanation
Indices: 1312289--1312344 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
1312279 TTTATCTCTT
* *
1312289 TTCATCTTC-TCATTCTT
1 TTCATTTTCTTCATTCTC
1312306 TTCATTTTCTTCATTTCTC
1 TTCATTTTCTTCA-TTCTC
1312325 TTCATTTCTCTTC-TTCTC
1 TTCATTT-TCTTCATTCTC
1312343 TT
1 TT
1312345 AGACTTCATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 8 0.24
18 10 0.29
19 11 0.32
20 5 0.15
ACGTcount: A:0.09, C:0.29, G:0.00, T:0.62
Consensus pattern (18 bp):
TTCATTTTCTTCATTCTC
Found at i:1312767 original size:76 final size:77
Alignment explanation
Indices: 1312608--1312817 Score: 291
Period size: 76 Copynumber: 2.8 Consensus size: 77
1312598 CAAAGCCAAA
* * * **
1312608 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCCATAGGAGGAACCGATT-CCCCCTAAATGG
1 AATTCCAGAATGCTCGGAGGGAACCGATT-CCCCCCATAGGAGGAACCGATTCCCCCCTAAACAG
1312672 TTTTGGCCCCGAG
65 TTTTGGCCCCGAG
*
1312685 ATTTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
*
1312750 TTT-GCTCCGAG
66 TTTGGCCCCGAG
* * * *
1312761 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCCCT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCT
1312818 TGTACAACGG
Statistics
Matches: 120, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
75 19 0.16
76 62 0.52
77 39 0.32
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.20
Consensus pattern (77 bp):
AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
TTTGGCCCCGAG
Found at i:1318598 original size:19 final size:19
Alignment explanation
Indices: 1318574--1318611 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1318564 TTTTGGTGCA
*
1318574 GAGGGAATCGATCCCCCCT
1 GAGGGAACCGATCCCCCCT
*
1318593 GAGGGAACCGATTCCCCCT
1 GAGGGAACCGATCCCCCCT
1318612 TTGAATGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.37, G:0.26, T:0.16
Consensus pattern (19 bp):
GAGGGAACCGATCCCCCCT
Found at i:1320607 original size:9 final size:8
Alignment explanation
Indices: 1320585--1320635 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 8
1320575 TGTTTCAACA
1320585 TTTTGGAT
1 TTTTGGAT
1320593 ATTTTGGAT
1 -TTTTGGAT
1320602 TGTTT-GAT
1 T-TTTGGAT
1320610 TTTGTGGAT
1 TTT-TGGAT
*
1320619 TGTTGGA-
1 TTTTGGAT
1320626 TTTTGGAT
1 TTTTGGAT
1320634 TT
1 TT
1320636 ATGAATGGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
7 8 0.22
8 12 0.33
9 16 0.44
ACGTcount: A:0.14, C:0.00, G:0.27, T:0.59
Consensus pattern (8 bp):
TTTTGGAT
Found at i:1320619 original size:17 final size:17
Alignment explanation
Indices: 1320587--1320630 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
1320577 TTTCAACATT
1320587 TTGGATATTT-TGGATTG
1 TTGGAT-TTTGTGGATTG
*
1320604 TTTGATTTTGTGGATTG
1 TTGGATTTTGTGGATTG
1320621 TTGGATTTTG
1 TTGGATTTTG
1320631 GATTTATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 3 0.12
17 21 0.88
ACGTcount: A:0.14, C:0.00, G:0.30, T:0.57
Consensus pattern (17 bp):
TTGGATTTTGTGGATTG
Found at i:1320963 original size:32 final size:32
Alignment explanation
Indices: 1320922--1320982 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
1320912 GAAGAAGTGC
1320922 TAAAGTAAGGGGGAGTAATTTCAAAACTTTGT
1 TAAAGTAAGGGGGAGTAATTTCAAAACTTTGT
1320954 TAAAGTAAGGGGGAGTAATTTCAAAACTT
1 TAAAGTAAGGGGGAGTAATTTCAAAACTT
1320983 GATTTCAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (32 bp):
TAAAGTAAGGGGGAGTAATTTCAAAACTTTGT
Found at i:1321474 original size:75 final size:77
Alignment explanation
Indices: 1321266--1321475 Score: 282
Period size: 75 Copynumber: 2.8 Consensus size: 77
1321256 CAAAGCCAAA
* * * **
1321266 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCCATAGGAGGAACCGATTCCCCCCTAAATGG
1 AATTCCAGAATGCTCGGAGGGAACCGA-TCCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAG
1321331 TTTTGGCCCCGAG
65 TTTTGGCCCCGAG
* * *
1321344 ATTTCCAGAATGCTCGGAGGGAATCGATTCCCCCCATAGGAGGAACCGATT-CCCCCTAAACAGT
1 AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
*
1321408 TTT-GCTCCGAG
66 TTTGGCCCCGAG
* * *
1321419 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCCCT
1 AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCCCT
1321476 TGTACAACGG
Statistics
Matches: 116, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
74 12 0.10
75 45 0.39
76 14 0.12
77 23 0.20
78 22 0.19
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.20
Consensus pattern (77 bp):
AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
TTTGGCCCCGAG
Found at i:1323134 original size:19 final size:19
Alignment explanation
Indices: 1323110--1323148 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
1323100 TCGAATGCAT
1323110 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
*
1323129 TCCATGCATCGATGCACTC
1 TCCATGCACCGATGCACTC
1323148 T
1 T
1323149 GATTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:1323173 original size:64 final size:64
Alignment explanation
Indices: 1323045--1323274 Score: 213
Period size: 64 Copynumber: 3.5 Consensus size: 64
1323035 TTTTCAAAGG
* * *
1323045 CATGCACCGATGCA-TCAATACCATGCATCGATGCA-TCAGTGAATAAATTGAAACATCGAATGC
1 CATGCACCGATGCACTC--T-CCATGCATCGATGCACTCA-TGATTTAATTAAAACATCGAATGC
1323108 ATT
62 ATT
1323111 CCATGCACCGATGCACTCTCCATGCATCGATGCACTC-TGATTTAATTAAAACATCGAATGCATT
1 -CATGCACCGATGCACTCTCCATGCATCGATGCACTCATGATTTAATTAAAACATCGAATGCA-T
1323175 T
64 T
* * ** * *
1323176 GATGCATCGATGCACAATCCATGCATCGATGCAC-CAGGCTATTT--TTCAAACATCGAATGCAC
1 CATGCACCGATGCACTCTCCATGCATCGATGCACTCATG--ATTTAATTAAAACATCGAATGCA-
1323238 TT
63 TT
* * *
1323240 CATGCATCGATGCACTCT-TAGTGCACCGATGCACT
1 CATGCACCGATGCACTCTCCA-TGCATCGATGCACT
1323275 AGGAGTCCAA
Statistics
Matches: 140, Mismatches: 15, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
63 2 0.01
64 98 0.70
65 17 0.12
66 7 0.05
67 14 0.10
68 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (64 bp):
CATGCACCGATGCACTCTCCATGCATCGATGCACTCATGATTTAATTAAAACATCGAATGCATT
Found at i:1323254 original size:17 final size:19
Alignment explanation
Indices: 1323226--1323274 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
1323216 ATTTTTCAAA
1323226 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
1323244 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
1323263 CACCGATGCACT
1 CATCGATGCACT
1323275 AGGAGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:1329104 original size:24 final size:22
Alignment explanation
Indices: 1329076--1329155 Score: 92
Period size: 24 Copynumber: 3.5 Consensus size: 22
1329066 CACTTAACAA
1329076 TGCATCGATGCATCCCTTTGAATG
1 TGCATCGATGCAT-CC-TTGAATG
*
1329100 TGCATCGATGCATCC--GCATG
1 TGCATCGATGCATCCTTGAATG
*
1329120 ATGCACCGATGCATTCCTTGAATG
1 -TGCATCGATGCA-TCCTTGAATG
1329144 TGCATCGATGCA
1 TGCATCGATGCA
1329156 CAACACCATG
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
20 4 0.08
21 11 0.23
22 3 0.06
23 13 0.27
24 17 0.35
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.29
Consensus pattern (22 bp):
TGCATCGATGCATCCTTGAATG
Found at i:1331704 original size:19 final size:19
Alignment explanation
Indices: 1331680--1331718 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
1331670 TCGAATGCAT
1331680 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
*
1331699 TCCATGCATCGATGCACTC
1 TCCATGCACCGATGCACTC
1331718 T
1 T
1331719 GATTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:1331742 original size:64 final size:64
Alignment explanation
Indices: 1331636--1331844 Score: 205
Period size: 64 Copynumber: 3.2 Consensus size: 64
1331626 TTTTCAAAGG
* * * *
1331636 CATGCATCGATGCA-TCAATGAATAAATTGAAACATCGAATGCATTCCATGCACCGATGCACTCT
1 CATGCATCGATGCACTC-ATGATTTAATTAAAACATCGAATGCATT-CATGCATCGATGCACTCT
1331700 C
64 C
* **
1331701 CATGCATCGATGCACTC-TGATTTAATTAAAACATCGAATGCATTTGATGCATCGATGCACAATC
1 CATGCATCGATGCACTCATGATTTAATTAAAACATCGAATGCA-TTCATGCATCGATGCACTCTC
* * *
1331765 CATGTATCGATGCAC-CAGGCTATTT--TTCAAACATCGAATGCACTTCATGCATCGATGCACTC
1 CATGCATCGATGCACTCATG--ATTTAATTAAAACATCGAATGCA-TTCATGCATCGATGCACTC
1331827 T-
63 TC
* *
1331828 TAGTGCACCGATGCACT
1 CA-TGCATCGATGCACT
1331845 AGGAGTCCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
63 2 0.02
64 96 0.80
65 16 0.13
66 6 0.05
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (64 bp):
CATGCATCGATGCACTCATGATTTAATTAAAACATCGAATGCATTCATGCATCGATGCACTCTC
Found at i:1331824 original size:17 final size:19
Alignment explanation
Indices: 1331796--1331844 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
1331786 ATTTTTCAAA
1331796 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
1331814 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
1331833 CACCGATGCACT
1 CATCGATGCACT
1331845 AGGAGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:1335298 original size:18 final size:20
Alignment explanation
Indices: 1335263--1335299 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1335253 TTCCATCTCT
1335263 TTTTTCTCTTCATTTCTTCA
1 TTTTTCTCTTCATTTCTTCA
1335283 TTTTTCTC-TC-TTTCTTC
1 TTTTTCTCTTCATTTCTTC
1335300 CTTTCCAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 2 0.12
20 8 0.47
ACGTcount: A:0.05, C:0.27, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTCTCTTCATTTCTTCA
Found at i:1335808 original size:20 final size:20
Alignment explanation
Indices: 1335779--1335817 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1335769 CTGGGTTAAG
*
1335779 GTATCGATACTGGATGAATA
1 GTATCAATACTGGATGAATA
*
1335799 GTATCAATACTGGTTGAAT
1 GTATCAATACTGGATGAAT
1335818 TGGGTCACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
GTATCAATACTGGATGAATA
Found at i:1337421 original size:11 final size:11
Alignment explanation
Indices: 1337405--1337429 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1337395 TGCAACAAGA
1337405 CTTCCAACATC
1 CTTCCAACATC
1337416 CTTCCAACATC
1 CTTCCAACATC
1337427 CTT
1 CTT
1337430 ATGTATTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.32
Consensus pattern (11 bp):
CTTCCAACATC
Found at i:1342513 original size:7 final size:7
Alignment explanation
Indices: 1342501--1342534 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
1342491 ATCATGGTCG
1342501 AATTTTT
1 AATTTTT
1342508 AATTTTT
1 AATTTTT
*
1342515 AA-TTTA
1 AATTTTT
1342521 AATTTTT
1 AATTTTT
1342528 AATTTTT
1 AATTTTT
1342535 GCAATTAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
AATTTTT
Found at i:1342526 original size:13 final size:13
Alignment explanation
Indices: 1342508--1342532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1342498 TCGAATTTTT
1342508 AATTTTTAATTTA
1 AATTTTTAATTTA
1342521 AATTTTTAATTT
1 AATTTTTAATTT
1342533 TTGCAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
AATTTTTAATTTA
Found at i:1344222 original size:19 final size:19
Alignment explanation
Indices: 1344195--1344240 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
1344185 ATTGAGACAT
*
1344195 TTTGTATTTTGTTATTTTC
1 TTTGCATTTTGTTATTTTC
1344214 TTTGCATTTTGTTATTTTC
1 TTTGCATTTTGTTATTTTC
1344233 TTTGCATT
1 TTTGCATT
1344241 CACATTAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.11, C:0.09, G:0.11, T:0.70
Consensus pattern (19 bp):
TTTGCATTTTGTTATTTTC
Found at i:1347474 original size:84 final size:82
Alignment explanation
Indices: 1347277--1348384 Score: 1041
Period size: 84 Copynumber: 13.4 Consensus size: 82
1347267 GCTCAAGGCC
* * * * * *
1347277 AGAAGGGCTACCTGCCACCAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
1 AGAAGGGTTATCTGTCACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
* * *
1347342 CAGTATAGCTTAAGTCG
66 CAGCATAACTTAAGTCT
* * * * * * * * *
1347359 AGAAGAGCTATATG-C-CAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTT
1 AGAAGGGTTATCTGTCACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCATATCATTT
* * *
1347422 ACAGCATAACTCAAGGCT
65 GCAGCATAACTTAAGTCT
* * *
1347440 ATAAGGGTTATCTGTCAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTT
1 AGAAGGGTTATCTGTCA-CAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
* * *
1347505 GCAGTATAGCTTAAGTCG
65 GCAGCATAACTTAAGTCT
* * * * * * * * *
1347523 AGAAGAGCTATATG-C-CAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTT
1 AGAAGGGTTATCTGTCACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCATATCATTT
* * *
1347586 ACAGCATAACTCAAGGCT
65 GCAGCATAACTTAAGTCT
* * * *
1347604 AGAAGGGTTATCTGTCAGCAAATACCTTTGAGTTCGACTACGCTCAGCTCCACGACACATCATTT
1 AGAAGGGTTATCTGTCA-CAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
* * *
1347669 GCAGAATAGCTTAAGTCG
65 GCAGCATAACTTAAGTCT
* * * * * *
1347687 AGAAGGGCTATCTG-C-CAAAGACCCTCGAGTTCGACTACGTTCAGCTTCGAGGGCATATCATTT
1 AGAAGGGTTATCTGTCACAAAGACCTTTGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATTT
* * *
1347750 ACAGCATAACTCAAGGCT
65 GCAGCATAACTTAAGTCT
*
1347768 AGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
1 AGAAGGGTTATCTGTCA-CAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
*
1347833 GCAGCACAACTTAAGTCT
65 GCAGCATAACTTAAGTCT
* * * *
1347851 AGAAGGGTTGTCTGCCAACACAAGACCTTTGAGTTCGACTACGCTCAACT-CAACGGCACATCAT
1 AGAAGGGTTATCTGTC-ACA-AAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCATATCAT
* *
1347915 TTGCAGTATAACTTAAGTCG
63 TTGCAGCATAACTTAAGTCT
** * *
1347935 AGAAGGGTTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTGTC-A-CAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
* * *
1348000 TACAGCATAACTCAAGGCT
64 TGCAGCATAACTTAAGTCT
* *
1348019 AGAAGGGTTATCTGTCACCAAAGACCTTGGAGTTTGACTACGCTCAGCTCCAAGGCATATCATTT
1 AGAAGGGTTATCTGTCA-CAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
*
1348084 GCAGCACAACTTAAGTCT
65 GCAGCATAACTTAAGTCT
* * * *
1348102 AGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGATTATGCTCAGCTCCAAGGCATATCATT
1 AGAAGGGTTATCTGTC-AC-AAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATT
* * *
1348167 TGTAGCATAGCTTAAGTCG
64 TGCAGCATAACTTAAGTCT
* * * * * * *
1348186 AGAAGGGCTATCT-TC-CAAAGACCCTTAAGTTCGATTACACTCAGCTCCCAGGCACATCATTTG
1 AGAAGGGTTATCTGTCACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
* *
1348249 CAGCATAGCTTAAGTCA
66 CAGCATAACTTAAGTCT
* * * * * * ** * *
1348266 AGAAGGGCTATCTG-C-CAAAGACCCTCGAGTTCAATTACTCTCAGCTTGGAGGGCACATCATTT
1 AGAAGGGTTATCTGTCACAAAGACCTTTGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATTT
* *
1348329 GCAGTATAACTTAAGTCG
65 GCAGCATAACTTAAGTCT
** * *
1348347 AGAAAAGCTATTTGTCAACAAAGACCTTTCGAGTTCGA
1 AGAAGGGTTATCTGTC-ACAAAGACCTTT-GAGTTCGA
1348385 GTTCGTTCAG
Statistics
Matches: 840, Mismatches: 161, Indels: 47
0.80 0.15 0.04
Matches are distributed among these distances:
80 180 0.21
81 143 0.17
82 17 0.02
83 189 0.22
84 299 0.36
85 12 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (82 bp):
AGAAGGGTTATCTGTCACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
CAGCATAACTTAAGTCT
Found at i:1347567 original size:164 final size:164
Alignment explanation
Indices: 1347268--1348350 Score: 1201
Period size: 164 Copynumber: 6.6 Consensus size: 164
1347258 TGCAGCTTAG
* * * *
1347268 CTCAAGGCCAGAAGGGCTACCTGCCACC-AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
* * * *
1347332 ACATCATTTGCAGTATAGCTTAAGTCGAGAAGAGCTATATGCCAAAGACCCTTAAGTTCGATTAC
66 ACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGACTAC
*
1347397 ACTCAGCTTCAAGGGCATAACATTTACAGCATAA
131 ACTCAGCTTCAAGGGCATATCATTTACAGCATAA
* * * *
1347431 CTCAAGGCTATAAGGGTTATCTGTCAGCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGT
1 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
* * * *
1347496 ACATCATTTGCAGTATAGCTTAAGTCGAGAAGAGCTATATGCCAAAGACCCTTAAGTTCGATTAC
66 ACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGACTAC
*
1347561 ACTCAGCTTCAAGGGCATAACATTTACAGCATAA
131 ACTCAGCTTCAAGGGCATATCATTTACAGCATAA
* * * * *
1347595 CTCAAGGCTAGAAGGGTTATCTGTCAGCAAATACCTTTGAGTTCGACTACGCTCAGCTCCACGAC
1 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
* **
1347660 ACATCATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGACTAC
66 ACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGACTAC
** *
1347725 GTTCAGCTTCGAGGGCATATCATTTACAGCATAA
131 ACTCAGCTTCAAGGGCATATCATTTACAGCATAA
1347759 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
1 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
* * * * * * * *
1347824 ATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACACAAGACCTTTGAGTTCGA
66 ACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-C--CA-AAGACCCTTAAGTTCGA
* * * * * *
1347889 CTACGCTCAAC-TCAACGGCACATCATTTGCAGTATAA
127 CTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
* * * **
1347926 CTTAAGTCGAGAAGGGTTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
1 CTCAAGGCTAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* * * * * * * *
1347991 CACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGA-CCTTGGAGTTTG
65 CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG---CCAAAGACCCTT-AAGTTCG
* * * *
1348055 ACTACGCTCAGCTCCAA-GGCATATCATTTGCAGCACAA
126 ACTACACTCAGCTTCAAGGGCATATCATTTACAGCATAA
* * * * * * * *
1348093 CTTAAGTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGATTATGCTCAGCTCCAAGG
1 CTCAAGGCTAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGG
* * * *
1348158 CATATCATTTGTAGCATAGCTTAAGTCGAGAAGGGCTATCTTCCAAAGACCCTTAAGTTCGATTA
65 CACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGACTA
* * * * *
1348223 CACTCAGCTCCCA-GGCACATCATTTGCAGCATAG
130 CACTCAGCTTCAAGGGCATATCATTTACAGCATAA
* * * * * * * * ** *
1348257 CTTAAGTCAAGAAGGGCTATCTG---CCAAAGACCCTCGAGTTCAATTACTCTCAGCTTGGAGGG
1 CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGG
* *
1348319 CACATCATTTGCAGTATAACTTAAGTCGAGAA
65 CACATCATTTGCAGCATAGCTTAAGTCGAGAA
1348351 AAGCTATTTG
Statistics
Matches: 805, Mismatches: 103, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
160 25 0.03
161 32 0.04
163 22 0.03
164 440 0.55
165 5 0.01
166 3 0.00
167 173 0.21
168 104 0.13
170 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (164 bp):
CTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGC
ACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTAAGTTCGACTAC
ACTCAGCTTCAAGGGCATATCATTTACAGCATAA
Done.