genome.fa.s791.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000791.1 Hibiscus syriacus cultivar Beakdansim tig00001533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68363

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167--4305	20	6.9	21	83	4	146	33	16	21	28	1.95
4171--4293	41	3.0	41	83	6	144	31	16	21	30	1.95
4117--4304	21	9.3	20	79	6	105	29	19	20	30	1.97
4270--4312	19	2.2	20	83	4	52	30	16	20	32	1.95
6455--6562	30	3.6	30	86	9	139	46	20	21	12	1.82
6486--6530	14	2.9	16	73	26	51	44	20	24	11	1.83
6466--6562	17	6.0	16	69	28	64	45	19	22	12	1.84
6734--6769	13	2.6	14	82	8	56	44	22	0	33	1.53
8105--8171	21	3.2	21	68	4	55	19	20	35	23	1.95
8624--8717	19	4.8	19	81	5	107	46	20	21	11	1.82
8624--8714	39	2.3	40	86	1	121	47	19	20	12	1.81
8723--8760	20	1.9	20	94	0	67	7	13	28	50	1.69
8769--8828	20	3.2	20	72	13	72	11	21	15	51	1.74
8920--9174	94	2.8	92	95	3	453	47	19	12	20	1.81
10936--10992	14	3.7	14	70	20	51	45	21	22	10	1.82
10928--11009	33	2.5	33	93	0	146	48	18	21	10	1.78
10928--11014	19	5.1	18	67	23	64	47	18	22	11	1.81
11021--11098	20	3.8	20	80	9	95	11	17	19	51	1.76
11705--11760	21	2.7	21	85	0	76	39	16	25	19	1.91
16675--16710	18	2.1	18	89	5	56	27	16	22	33	1.95
16656--16836	65	2.8	62	77	14	179	27	18	24	29	1.98
16676--16885	65	3.3	63	80	8	226	26	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25414--25462	19	2.7	17	87	9	62	28	20	26	24	1.99
25437--25623	65	2.9	64	78	13	197	27	19	20	32	1.97
25437--25644	65	3.2	64	78	15	189	27	19	21	31	1.97
38607--38651	23	2.0	23	95	0	81	33	24	4	37	1.76
40261--40341	16	4.9	16	75	11	65	60	0	1	38	1.05
44073--44230	21	7.8	20	71	9	88	38	25	16	19	1.92
44133--44249	20	5.7	20	75	12	78	38	23	17	20	1.93
44217--44426	20	10.5	20	83	5	228	36	25	18	20	1.95
45109--45155	24	2.0	24	87	8	69	25	14	21	38	1.92
45330--45354	12	2.1	12	100	0	50	72	0	28	0	0.86
47631--47771	33	4.2	33	90	5	239	46	19	21	12	1.83
47612--47771	67	2.4	67	90	3	243	45	20	21	13	1.84
47631--47823	52	3.8	52	80	14	242	46	18	22	12	1.83
47673--47845	85	2.0	86	98	1	339	45	17	23	13	1.83
47764--47845	33	2.5	33	100	0	164	45	18	23	13	1.84
47852--47966	52	2.2	52	96	3	214	13	24	18	43	1.86
47870--47966	19	5.4	19	82	15	134	14	22	17	45	1.85
48072--48108	14	2.6	14	91	0	65	45	21	0	32	1.52
50064--50156	33	2.8	33	91	0	159	47	20	20	11	1.81
50083--50139	14	3.7	14	72	20	51	45	21	21	12	1.83
50027--50161	19	7.6	19	75	16	119	45	22	19	11	1.83
50157--50271	19	6.3	19	79	10	132	9	16	27	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50319--50602	93	3.1	93	98	0	550	45	19	12	22	1.84
52316--52399	19	4.7	19	80	14	106	44	22	22	10	1.84
52294--52399	52	2.0	52	96	0	194	45	20	23	10	1.82
52413--52467	14	3.6	14	73	21	56	9	23	21	45	1.80
52395--52475	33	2.5	33	93	0	135	9	22	20	46	1.80
52452--52527	21	3.7	21	83	3	109	11	25	17	46	1.82
52451--52528	41	1.9	41	97	0	147	12	25	16	44	1.83
52606--52676	33	2.2	33	92	0	115	47	18	22	11	1.80
52859--52913	22	2.5	22	81	0	74	20	16	40	23	1.91
53060--53253	20	9.6	20	82	5	221	19	19	25	35	1.95
53060--53253	60	3.2	60	83	0	253	19	19	25	35	1.95
53240--53323	21	4.0	21	72	7	71	25	16	23	34	1.95
53220--53318	42	2.4	42	75	12	98	21	18	22	38	1.93
57827--57877	23	2.2	23	82	0	57	27	3	0	68	1.07
61711--61787	2	38.5	2	100	0	154	50	0	0	49	1.00

Tables:   1

The End!