Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007912.1 Hibiscus syriacus cultivar Beakdansim tig00110313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1361188
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
File 3 of 6
Found at i:664923 original size:40 final size:39
Alignment explanation
Indices: 664802--664925 Score: 162
Period size: 40 Copynumber: 3.2 Consensus size: 39
664792 ACCATAGTGC
*
664802 TACACATAAGGTCGTGCCCACCACATACACTAGTG-CAT
1 TACACATAAGGTCGTGCCCACCATATACACTAGTGTCAT
* *
664840 TACACATAAGGTCGTGCCCACCATTTACACCGAAGTGT-AT
1 TACACATAAGGTCGTGCCCACCATATACA-C-TAGTGTCAT
* *
664880 TACACATAACGTCGTGCCCACCATATACACTTAGTGTCCT
1 TACACATAAGGTCGTGCCCACCATATACAC-TAGTGTCAT
664920 TACACA
1 TACACA
664926 CTATAGTGCA
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
38 27 0.36
39 7 0.09
40 40 0.54
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.24
Consensus pattern (39 bp):
TACACATAAGGTCGTGCCCACCATATACACTAGTGTCAT
Found at i:665261 original size:24 final size:24
Alignment explanation
Indices: 665227--665275 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
665217 AGACTTCCTG
*
665227 ATGATGTATAAAACATCTATGTAC
1 ATGATGAATAAAACATCTATGTAC
*
665251 ATGATGAATAAAACTTCTATGTAC
1 ATGATGAATAAAACATCTATGTAC
665275 A
1 A
665276 ATTTTATGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (24 bp):
ATGATGAATAAAACATCTATGTAC
Found at i:671208 original size:7 final size:7
Alignment explanation
Indices: 671183--671227 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
671173 TCATTAATCA
*
671183 ATAAACT
1 ATAAACC
*
671190 ATAGACC
1 ATAAACC
*
671197 ATAAATC
1 ATAAACC
671204 ATAAACC
1 ATAAACC
*
671211 ATAAATC
1 ATAAACC
671218 ATAAACC
1 ATAAACC
671225 ATA
1 ATA
671228 GCCCAATATA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.56, C:0.20, G:0.02, T:0.22
Consensus pattern (7 bp):
ATAAACC
Found at i:671211 original size:14 final size:14
Alignment explanation
Indices: 671194--671227 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
671184 TAAACTATAG
671194 ACCATAAATCATAA
1 ACCATAAATCATAA
671208 ACCATAAATCATAA
1 ACCATAAATCATAA
671222 ACCATA
1 ACCATA
671228 GCCCAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.21
Consensus pattern (14 bp):
ACCATAAATCATAA
Found at i:671329 original size:40 final size:40
Alignment explanation
Indices: 671285--671394 Score: 161
Period size: 40 Copynumber: 2.8 Consensus size: 40
671275 ACCGTAGTGC
671285 TACACATAAGGTCGTGTCCACCATATACACCGAAGTGT-AT
1 TACACATAAGGTCGTGTCCACCATATACACCGAAGT-TCAT
* *
671325 TACACATAAGGTTGTGTCCACCATATACACTGAAGTTCAT
1 TACACATAAGGTCGTGTCCACCATATACACCGAAGTTCAT
*
671365 TACACATAAGGTC-TTTCCCACCATATACAC
1 TACACATAAGGTCGTGT-CCACCATATACAC
671395 TTAGTGTCCT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
39 3 0.05
40 61 0.95
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (40 bp):
TACACATAAGGTCGTGTCCACCATATACACCGAAGTTCAT
Found at i:671408 original size:40 final size:39
Alignment explanation
Indices: 671285--671411 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
671275 ACCGTAGTGC
* *
671285 TACACATAAGGTCGTGTCCACCATATACACCGAAGTGT-AT
1 TACACATAAGGTC-TTTCCACCATATACA-CTAAGTGTCAT
671325 TACACATAAGGT-TGTGTCCACCATATACACTGAAGT-TCAT
1 TACACATAAGGTCT-T-TCCACCATATACACT-AAGTGTCAT
* *
671365 TACACATAAGGTCTTTCCCACCATATACACTTAGTGTCCT
1 TACACATAAGGTCTTT-CCACCATATACACTAAGTGTCAT
671405 TACACAT
1 TACACAT
671412 TATAGTGGAA
Statistics
Matches: 76, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
38 1 0.01
39 6 0.08
40 68 0.89
41 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (39 bp):
TACACATAAGGTCTTTCCACCATATACACTAAGTGTCAT
Found at i:671744 original size:24 final size:25
Alignment explanation
Indices: 671712--671763 Score: 97
Period size: 24 Copynumber: 2.1 Consensus size: 25
671702 AGTCTTCTTG
671712 ATGATGTATAAAACATCTATGT-AT
1 ATGATGTATAAAACATCTATGTAAT
671736 ATGATGTATAAAACATCTATGTAAT
1 ATGATGTATAAAACATCTATGTAAT
671761 ATG
1 ATG
671764 TCATGCATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (25 bp):
ATGATGTATAAAACATCTATGTAAT
Found at i:672494 original size:11 final size:11
Alignment explanation
Indices: 672471--672506 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
672461 ATGTTTTCAT
672471 GATTTTG-TTC
1 GATTTTGATTC
672481 GATTTTGATTC
1 GATTTTGATTC
*
672492 GATTCTGATTC
1 GATTTTGATTC
672503 GATT
1 GATT
672507 CAAGCATGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.17, C:0.11, G:0.19, T:0.53
Consensus pattern (11 bp):
GATTTTGATTC
Found at i:675109 original size:18 final size:18
Alignment explanation
Indices: 675062--675110 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
675052 GCTATACAAG
* *
675062 TGTGACTATTCCAAGACT
1 TGTGCCTATTCTAAGACT
675080 TGTGCCTATTCTAAGACT
1 TGTGCCTATTCTAAGACT
675098 TGTGCCTATTCTA
1 TGTGCCTATTCTA
675111 TATAAAGGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (18 bp):
TGTGCCTATTCTAAGACT
Found at i:679755 original size:19 final size:19
Alignment explanation
Indices: 679728--679771 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
679718 GGATTTATTA
*
679728 TGAATAGATAAAAGAACAT
1 TGAAAAGATAAAAGAACAT
* *
679747 TGAAAAGATAGAAGAGCAT
1 TGAAAAGATAAAAGAACAT
679766 TGAAAA
1 TGAAAA
679772 TGCAGCCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.05, G:0.20, T:0.18
Consensus pattern (19 bp):
TGAAAAGATAAAAGAACAT
Found at i:687605 original size:18 final size:19
Alignment explanation
Indices: 687573--687610 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
687563 AAAACTAAAG
* *
687573 AATTAAAAATCTAAGGTTT
1 AATTAAAAATATAAGATTT
687592 AATT-AAAATATAAGATTT
1 AATTAAAAATATAAGATTT
687610 A
1 A
687611 CTTCAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.37
Consensus pattern (19 bp):
AATTAAAAATATAAGATTT
Found at i:693293 original size:2 final size:2
Alignment explanation
Indices: 693286--693353 Score: 136
Period size: 2 Copynumber: 34.0 Consensus size: 2
693276 TTTGAGATTA
693286 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
693328 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
693354 TTTGATAAAG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:697242 original size:56 final size:59
Alignment explanation
Indices: 697108--697246 Score: 160
Period size: 61 Copynumber: 2.4 Consensus size: 59
697098 TGCCCAATGG
* * * *
697108 GCTAGGGTAAGTCCTTATAGACTTAAGACACCCATTTAGATAGGCTCTTACGTCTAATGA
1 GCTAAGGTAAGTCCTTATGGACCTAAGACACCCACTTAGATAGGCTCTTACGTCT-ATGA
* * *
697168 GCCTAAGGTAATTTCTTATGGACCTAAGACACTCC-CTTAG-TAGGCTCTTACG-CT-TTA
1 G-CTAAGGTAAGTCCTTATGGACCTAAGACAC-CCACTTAGATAGGCTCTTACGTCTATGA
697225 GCTAAGGTAAGTCCTTATGGAC
1 GCTAAGGTAAGTCCTTATGGAC
697247 TCAATGTGCT
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
56 19 0.28
57 3 0.04
59 2 0.03
60 13 0.19
61 29 0.43
62 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (59 bp):
GCTAAGGTAAGTCCTTATGGACCTAAGACACCCACTTAGATAGGCTCTTACGTCTATGA
Found at i:698338 original size:29 final size:29
Alignment explanation
Indices: 698298--698354 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
698288 AATAAGTTAG
698298 TTTTTATAAGTATAGTTAAGTTTAAAGGT
1 TTTTTATAAGTATAGTTAAGTTTAAAGGT
698327 TTTTTATAAGTATAGTTAAGTTTAAAGG
1 TTTTTATAAGTATAGTTAAGTTTAAAGG
698355 CTTGAAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (29 bp):
TTTTTATAAGTATAGTTAAGTTTAAAGGT
Found at i:699486 original size:23 final size:23
Alignment explanation
Indices: 699460--699561 Score: 107
Period size: 23 Copynumber: 4.4 Consensus size: 23
699450 GGTTCTACGC
*
699460 GGTCCTTCGGGACAATTCTATGT
1 GGTCATTCGGGACAATTCTATGT
* * * *
699483 GGTCATTCGAGACATTTCTACGC
1 GGTCATTCGGGACAATTCTATGT
* * *
699506 GGTTATTCGGGATAATACTATGT
1 GGTCATTCGGGACAATTCTATGT
*
699529 GGTCATTCGGGACATTTCTATGT
1 GGTCATTCGGGACAATTCTATGT
699552 GG-CACTTCGG
1 GGTCA-TTCGG
699562 TGCAATTTAT
Statistics
Matches: 62, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
22 2 0.03
23 60 0.97
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (23 bp):
GGTCATTCGGGACAATTCTATGT
Found at i:699527 original size:46 final size:46
Alignment explanation
Indices: 699452--699548 Score: 149
Period size: 46 Copynumber: 2.1 Consensus size: 46
699442 GAGTCGAAGG
* *
699452 TTCTACGCGGTCCTTCGGGACAATTCTATGTGGTCATTCGAGACAT
1 TTCTACGCGGTCATTCGGGACAATACTATGTGGTCATTCGAGACAT
* * *
699498 TTCTACGCGGTTATTCGGGATAATACTATGTGGTCATTCGGGACAT
1 TTCTACGCGGTCATTCGGGACAATACTATGTGGTCATTCGAGACAT
699544 TTCTA
1 TTCTA
699549 TGTGGCACTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.35
Consensus pattern (46 bp):
TTCTACGCGGTCATTCGGGACAATACTATGTGGTCATTCGAGACAT
Found at i:699561 original size:46 final size:47
Alignment explanation
Indices: 699452--699561 Score: 145
Period size: 46 Copynumber: 2.4 Consensus size: 47
699442 GAGTCGAAGG
*
699452 TTCTACGCGGTC-CTTCGGGACAATTCTATGTGGTCATTCGAGACAT
1 TTCTACGCGGTCACTTCGGGACAATACTATGTGGTCATTCGAGACAT
* * *
699498 TTCTACGCGGTTA-TTCGGGATAATACTATGTGGTCATTCGGGACAT
1 TTCTACGCGGTCACTTCGGGACAATACTATGTGGTCATTCGAGACAT
* *
699544 TTCTATGTGG-CACTTCGG
1 TTCTACGCGGTCACTTCGG
699562 TGCAATTTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
45 1 0.02
46 54 0.98
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.35
Consensus pattern (47 bp):
TTCTACGCGGTCACTTCGGGACAATACTATGTGGTCATTCGAGACAT
Found at i:699687 original size:6 final size:6
Alignment explanation
Indices: 699676--699740 Score: 76
Period size: 6 Copynumber: 10.8 Consensus size: 6
699666 TAATGAACTG
* * * *
699676 TGATAA TGATAA TGATAG TGACAA TGATAA TGATAG TGACAA TGATAA
1 TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA TGATAA
**
699724 TGATGT TGATAA TGATA
1 TGATAA TGATAA TGATA
699741 TTAATGATGA
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.32
Consensus pattern (6 bp):
TGATAA
Found at i:699701 original size:18 final size:18
Alignment explanation
Indices: 699675--699740 Score: 98
Period size: 18 Copynumber: 3.7 Consensus size: 18
699665 ATAATGAACT
*
699675 GTGATAATGATAATGATA
1 GTGACAATGATAATGATA
699693 GTGACAATGATAATGATA
1 GTGACAATGATAATGATA
699711 GTGACAATGATAATGAT-
1 GTGACAATGATAATGATA
*
699728 GTTGATAATGATA
1 G-TGACAATGATA
699741 TTAATGATGA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 1 0.02
18 44 0.98
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (18 bp):
GTGACAATGATAATGATA
Found at i:699759 original size:12 final size:12
Alignment explanation
Indices: 699676--699759 Score: 59
Period size: 12 Copynumber: 7.2 Consensus size: 12
699666 TAATGAACTG
*
699676 TGATAATGATAA
1 TGATGATGATAA
*
699688 TGAT-AGTGACAA
1 TGATGA-TGATAA
* *
699700 TGATAATGATAG
1 TGATGATGATAA
**
699712 TGACAATGATAA
1 TGATGATGATAA
*
699724 TGATGTTGATAA
1 TGATGATGATAA
699736 TGAT-AT--TAA
1 TGATGATGATAA
*
699745 TGATGATGATGA
1 TGATGATGATAA
699757 TGA
1 TGA
699760 AAAGGATATA
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
9 7 0.12
10 2 0.04
11 2 0.04
12 45 0.79
13 1 0.02
ACGTcount: A:0.42, C:0.02, G:0.23, T:0.33
Consensus pattern (12 bp):
TGATGATGATAA
Found at i:699767 original size:27 final size:27
Alignment explanation
Indices: 699716--699768 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
699706 TGATAGTGAC
* * *
699716 AATGATAATGATGTTGATAATGATATT
1 AATGATAATGATGATGAAAAGGATATT
*
699743 AATGATGATGATGATGAAAAGGATAT
1 AATGATAATGATGATGAAAAGGATAT
699769 ATATATGTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.34
Consensus pattern (27 bp):
AATGATAATGATGATGAAAAGGATATT
Found at i:702281 original size:156 final size:157
Alignment explanation
Indices: 701992--702301 Score: 421
Period size: 156 Copynumber: 2.0 Consensus size: 157
701982 TTTTATTTAA
* ** * * *
701992 AAAACACCATAGTAATCCTTCCAACTGATCACATCATAATATATAGGTTTCCCAAAACCATATAC
1 AAAACACCATAGTAATCCCTCCAACCCAACACATCATAATATACAGGTTTCCCAAAACCATACAC
* * * *
702057 CCACATGTACATCAAGTAAGGCCTTGAGCACAAAGCCGATGAGCTTGCGAAAATACTTCCTCCAA
66 CCACATGTACATCAAGTAAGGCCCTGAGCACAAAGCCGAGGAGCCTACGAAAATACTTCCTCCAA
702122 CAATACCCCCAAATAAAACATTTTATC
131 CAATACCCCCAAATAAAACATTTTATC
* * *
702149 AAAA-ACCATAGTAATCCCTCCAGCCCAACACATCATAATATGCAGG-TTCCCTAGAACCATACA
1 AAAACACCATAGTAATCCCTCCAACCCAACACATCATAATATACAGGTTTCCC-AAAACCATACA
* *
702212 CCCAC-TGTCACATCAGGTAAGGCCCTGAGCACAAAGCCGAGGAGCCTAC-AAGTATACTTCCTC
65 CCCACATGT-ACATCAAGTAAGGCCCTGAGCACAAAGCCGAGGAGCCTACGAA-AATACTTCCTC
*
702275 CAACAATACCCCCAAATAAAATATTTT
128 CAACAATACCCCCAAATAAAACATTTT
702302 CTGTCCATAA
Statistics
Matches: 134, Mismatches: 16, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
155 10 0.07
156 120 0.90
157 4 0.03
ACGTcount: A:0.38, C:0.29, G:0.11, T:0.22
Consensus pattern (157 bp):
AAAACACCATAGTAATCCCTCCAACCCAACACATCATAATATACAGGTTTCCCAAAACCATACAC
CCACATGTACATCAAGTAAGGCCCTGAGCACAAAGCCGAGGAGCCTACGAAAATACTTCCTCCAA
CAATACCCCCAAATAAAACATTTTATC
Found at i:702380 original size:24 final size:24
Alignment explanation
Indices: 702353--702401 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
702343 ATTAGATATT
702353 AGAACAGAATCCAGGTCAGGTATC
1 AGAACAGAATCCAGGTCAGGTATC
* *
702377 AGAACAGAATCCATGTTAGGTATC
1 AGAACAGAATCCAGGTCAGGTATC
702401 A
1 A
702402 TAATAAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.20
Consensus pattern (24 bp):
AGAACAGAATCCAGGTCAGGTATC
Found at i:708169 original size:28 final size:28
Alignment explanation
Indices: 708137--708193 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
708127 GGCTTCAATT
*
708137 AACAGTTCTACCATACCTAATCAAACCA
1 AACAGTTATACCATACCTAATCAAACCA
* *
708165 AACAGTTATACTATACCTAGTCAAACCA
1 AACAGTTATACCATACCTAATCAAACCA
708193 A
1 A
708194 TTCCAAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (28 bp):
AACAGTTATACCATACCTAATCAAACCA
Found at i:715968 original size:55 final size:55
Alignment explanation
Indices: 715840--715950 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 55
715830 ACCTTTTATA
* * *
715840 CACCTAAAGAAATTAACGTCTAATATTAAGGGTGTTTGTGATTGATTAAATGATT
1 CACCTAAAGAAATTAACATCTAATATTAAGGGTGTCTGTGAATGATTAAATGATT
715895 CACCTAAAGAAATTAACATCTAATATTAAGGGTGTCTGTGAATGATTAAATGATT
1 CACCTAAAGAAATTAACATCTAATATTAAGGGTGTCTGTGAATGATTAAATGATT
715950 C
1 C
715951 GGTTAACTGT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (55 bp):
CACCTAAAGAAATTAACATCTAATATTAAGGGTGTCTGTGAATGATTAAATGATT
Found at i:719355 original size:35 final size:35
Alignment explanation
Indices: 719299--719373 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
719289 ATTAATGTTC
*
719299 AAATTCTAAAACACTTCAATTACATTCTAAACCCT
1 AAATTCCAAAACACTTCAATTACATTCTAAACCCT
* *
719334 AAATTCCAAAATACTTTAATTACATTCTAAACCCT
1 AAATTCCAAAACACTTCAATTACATTCTAAACCCT
719369 AAATT
1 AAATT
719374 AAAGTATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (35 bp):
AAATTCCAAAACACTTCAATTACATTCTAAACCCT
Found at i:719444 original size:35 final size:34
Alignment explanation
Indices: 719368--719445 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 34
719358 TTCTAAACCC
* *
719368 TAAATTAAAGTATTTTAAAATTTGGGGTTTAAAA
1 TAAATTGAAGTATTTTAAAATTTGGGGGTTAAAA
* * *
719402 TATAATTGAATTATTTTGAAATTTGGGGGTTAGAA
1 TA-AATTGAAGTATTTTAAAATTTGGGGGTTAAAA
719437 TGAAATTGA
1 T-AAATTGA
719446 GGACTGTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
34 2 0.05
35 34 0.92
36 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.41
Consensus pattern (34 bp):
TAAATTGAAGTATTTTAAAATTTGGGGGTTAAAA
Found at i:720250 original size:51 final size:51
Alignment explanation
Indices: 720174--720323 Score: 291
Period size: 51 Copynumber: 2.9 Consensus size: 51
720164 CTCATGGTAC
*
720174 TACTCTTAGCAAGACTCAGTGTCCTAACTCTAAAGATGAACAAAATCGTAT
1 TACTCTTAGCAAGACTCAGTGTCCTAACTCTAAAGATGAACGAAATCGTAT
720225 TACTCTTAGCAAGACTCAGTGTCCTAACTCTAAAGATGAACGAAATCGTAT
1 TACTCTTAGCAAGACTCAGTGTCCTAACTCTAAAGATGAACGAAATCGTAT
720276 TACTCTTAGCAAGACTCAGTGTCCTAACTCTAAAGATGAACGAAATCG
1 TACTCTTAGCAAGACTCAGTGTCCTAACTCTAAAGATGAACGAAATCG
720324 CATGAGTAAA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
51 98 1.00
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (51 bp):
TACTCTTAGCAAGACTCAGTGTCCTAACTCTAAAGATGAACGAAATCGTAT
Found at i:721605 original size:3 final size:3
Alignment explanation
Indices: 721597--721629 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
721587 TAGATCTATT
721597 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
721630 ATTACGAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:721789 original size:68 final size:69
Alignment explanation
Indices: 721710--721840 Score: 219
Period size: 69 Copynumber: 1.9 Consensus size: 69
721700 GTTGGAAAAA
* * *
721710 TAATTTATTTATTAGTATATT-CTGGTTATTGTCATGTTATTATATTAAAAGTAACATTAATTTT
1 TAATATATTTATTAGTATATTACTGGTTATTGTCATGTGATTATATGAAAAGTAACATTAATTTT
721774 TAAT
66 TAAT
*
721778 TAATATATTTATTAGTATATTACTGGTTATTGTCATGTGATTATATGAAAAGTACCATTAATT
1 TAATATATTTATTAGTATATTACTGGTTATTGTCATGTGATTATATGAAAAGTAACATTAATT
721841 CATAAGGTTC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
68 20 0.34
69 38 0.66
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (69 bp):
TAATATATTTATTAGTATATTACTGGTTATTGTCATGTGATTATATGAAAAGTAACATTAATTTT
TAAT
Found at i:723908 original size:22 final size:22
Alignment explanation
Indices: 723883--723942 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
723873 AAATTAAACG
* *
723883 ATAAAAGAAAGAAAGTAATAAA
1 ATAAAAGAAAAAAAATAATAAA
723905 AT-AAAGATAAAAAAATAATAAA
1 ATAAAAGA-AAAAAAATAATAAA
*
723927 ATAAATAGAAATAAAA
1 ATAAA-AGAAAAAAAA
723943 CAAAACAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 5 0.16
22 16 0.50
23 8 0.25
24 3 0.09
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (22 bp):
ATAAAAGAAAAAAAATAATAAA
Found at i:723909 original size:5 final size:5
Alignment explanation
Indices: 723899--723990 Score: 51
Period size: 5 Copynumber: 17.0 Consensus size: 5
723889 GAAAGAAAGT
* *
723899 AATAA AATAA AGATAA AAAAA TAATAA AAT-A AATAGA AATAA AACAA
1 AATAA AATAA A-ATAA AATAA -AATAA AATAA AATA-A AATAA AATAA
* ***
723946 AACAA AATGAA GGGAA AATAAA AATAA ATATAAA AATAA TAATAA
1 AATAA AAT-AA AATAA AAT-AA AATAA A-AT-AA AATAA -AATAA
723991 TATATATATA
Statistics
Matches: 68, Mismatches: 10, Indels: 17
0.72 0.11 0.18
Matches are distributed among these distances:
4 4 0.06
5 31 0.46
6 30 0.44
7 3 0.04
ACGTcount: A:0.74, C:0.02, G:0.07, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:723910 original size:17 final size:17
Alignment explanation
Indices: 723851--723911 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
723841 GAAAATGGCT
*
723851 AAATAAATAAAGTAATA
1 AAATAAAGAAAGTAATA
*
723868 AAATAAAATTAAACG--ATA
1 AAAT-AAA-GAAA-GTAATA
*
723886 AAAGAAAGAAAGTAATA
1 AAATAAAGAAAGTAATA
723903 AAATAAAGA
1 AAATAAAGA
723912 TAAAAAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
15 1 0.03
16 3 0.08
17 18 0.50
18 9 0.25
19 4 0.11
20 1 0.03
ACGTcount: A:0.70, C:0.02, G:0.10, T:0.18
Consensus pattern (17 bp):
AAATAAAGAAAGTAATA
Found at i:723921 original size:14 final size:14
Alignment explanation
Indices: 723872--723922 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
723862 GTAATAAAAT
*
723872 AAAATTAAACGATAA
1 AAAAATAAA-GATAA
*
723887 AAGAAAGAAAG-TAA
1 AA-AAATAAAGATAA
*
723901 TAAAATAAAGATAA
1 AAAAATAAAGATAA
723915 AAAAATAA
1 AAAAATAA
723923 TAAAATAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
13 7 0.24
14 14 0.48
15 3 0.10
16 5 0.17
ACGTcount: A:0.73, C:0.02, G:0.10, T:0.16
Consensus pattern (14 bp):
AAAAATAAAGATAA
Found at i:723990 original size:12 final size:11
Alignment explanation
Indices: 723902--723990 Score: 51
Period size: 11 Copynumber: 8.1 Consensus size: 11
723892 AGAAAGTAAT
723902 AAAATAAAGATA
1 AAAATAAA-ATA
723914 AAAA-AATAAT-
1 AAAATAA-AATA
723924 AAAAT-AAATA
1 AAAATAAAATA
* *
723934 GAAATAAAA-C
1 AAAATAAAATA
* *
723944 AAAACAAAATG
1 AAAATAAAATA
***
723955 AAGGGAAAATA
1 AAAATAAAATA
723966 AAAATAAATATA
1 AAAATAAA-ATA
723978 AAAATAATAATA
1 AAAATAA-AATA
723990 A
1 A
723991 TATATATATA
Statistics
Matches: 58, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
9 3 0.05
10 16 0.28
11 19 0.33
12 19 0.33
13 1 0.02
ACGTcount: A:0.74, C:0.02, G:0.07, T:0.17
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:724118 original size:2 final size:2
Alignment explanation
Indices: 724111--724140 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
724101 GAAAATAAGA
724111 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
724141 GTAAATATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:725403 original size:2 final size:2
Alignment explanation
Indices: 725396--725431 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
725386 TATTATTTAA
725396 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
725432 TATTATTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:725567 original size:73 final size:76
Alignment explanation
Indices: 725425--726082 Score: 881
Period size: 75 Copynumber: 8.7 Consensus size: 76
725415 TATATATATA
* *
725425 TATATATTAT-T-A-TTTTCCAAAATGTTTCT-AAAACCATATATTATATATAT-TTTT-TAAAA
1 TATATATTATATAAGTTTT-CAAAATGTTT-TAAAAACTATATATTATATATATATTTTCAAAAA
725484 TGTTTT-AAAAAC
64 TGTTTTAAAAAAC
725496 TATATTATATATATATATATGTATTTTCAAAATGTTTTTAAAAACTATATATTATATATATATTT
1 --TA-TATAT-TATATA-A-G--TTTTCAAAATG-TTTTAAAAACTATATATTATATATATATTT
725561 TCAAAAATGTTTTAAAAAAC
57 TCAAAAATGTTTTAAAAAAC
* *
725581 AATATATTATACAAGTTTTCAAAATG-TTTAAAAACTATATATTATATATATATTTTCAAAAATG
1 TATATATTATATAAGTTTTCAAAATGTTTTAAAAACTATATATTATATATATATTTTCAAAAATG
725645 TTTTAAAAAAC
66 TTTTAAAAAAC
* *
725656 AATATATTATACAAGTTTTCAAAATG-TTTAAAAACTATATATTATATATATA--TTCAAAAATG
1 TATATATTATATAAGTTTTCAAAATGTTTTAAAAACTATATATTATATATATATTTTCAAAAATG
725718 TTTTAAAAAAC
66 TTTTAAAAAAC
* *
725729 TATATATTATATAATTTTTCAAAATGTTTAAAAAACTATATATTATATATATATTTTC-AAAATG
1 TATATATTATATAAGTTTTCAAAATGTTTTAAAAACTATATATTATATATATATTTTCAAAAATG
*
725793 TTTTTAAAAAC
66 TTTTAAAAAAC
* * * *
725804 CATATATTATATAAGTTTTCAGAATATTTTAAAAAC--TATATTATATATATATTTT-TAAAATG
1 TATATATTATATAAGTTTTCAAAATGTTTTAAAAACTATATATTATATATATATTTTCAAAAATG
725866 TTTTAAAAAAC
66 TTTTAAAAAAC
*
725877 TATATATTATATAAGTTTTCAAAATGTTTTTAAAAAACTATATATTATATA-A-GTTTTC-AAAA
1 TATATATTATATAAGTTTTCAAAATG-TTTT-AAAAACTATATATTATATATATATTTTCAAAAA
725939 TGTTTTTAAAAAAC
64 TG-TTTTAAAAAAC
*
725953 TATATATTATATAAGTTTTCAAAATATTTTAAAAACTATATA-T-TATATATATTTTC-AAAATG
1 TATATATTATATAAGTTTTCAAAATGTTTTAAAAACTATATATTATATATATATTTTCAAAAATG
726015 TTTTAAAAAAC
66 TTTTAAAAAAC
*
726026 TATATATTATACAAGTTTTCAAAATGTTTTAAAAACTATATTATATATATATATATT
1 TATATATTATATAAGTTTTCAAAATGTTTTAAAAACTATA-TAT-TATATATATATT
726083 AAAAACGAAA
Statistics
Matches: 532, Mismatches: 23, Indels: 56
0.87 0.04 0.09
Matches are distributed among these distances:
72 4 0.01
73 155 0.29
74 59 0.11
75 171 0.32
76 42 0.08
77 32 0.06
78 1 0.00
79 1 0.00
80 1 0.00
81 13 0.02
82 32 0.06
83 5 0.01
84 10 0.02
85 6 0.01
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (76 bp):
TATATATTATATAAGTTTTCAAAATGTTTTAAAAACTATATATTATATATATATTTTCAAAAATG
TTTTAAAAAAC
Found at i:725644 original size:38 final size:39
Alignment explanation
Indices: 725417--726082 Score: 743
Period size: 38 Copynumber: 17.5 Consensus size: 39
725407 TATATATATA
725417 TATATATATATATATTATTATTTTCCAAAATGTTTCT--AAAAC
1 TATATAT-TATATA-TA-TATTTT-CAAAATGTTT-TAAAAAAC
* *
725459 CATATATTATATATAT-TTTTTAAAATGTTTT-AAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
*
725496 TATATTATATATATATATATGTATTTTCAAAATGTTTTTAAAAAC
1 --TA-TATAT-TATATATA--TATTTTCAAAATGTTTTAAAAAAC
725541 TATATATTATATATATATTTTCAAAAATGTTTTAAAAAAC
1 TATATATTATATATATATTTTC-AAAATGTTTTAAAAAAC
* * *
725581 AATATATTATACA-A-GTTTTCAAAATG-TTT-AAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
725616 TATATATTATATATATATTTTCAAAAATGTTTTAAAAAAC
1 TATATATTATATATATATTTTC-AAAATGTTTTAAAAAAC
* * *
725656 AATATATTATACA-A-GTTTTCAAAATG-TTT-AAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
725691 TATATATTATATATATA--TTCAAAAATGTTTTAAAAAAC
1 TATATATTATATATATATTTTC-AAAATGTTTTAAAAAAC
725729 TATATATTATATA-AT-TTTTCAAAATG-TTTAAAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
*
725765 TATATATTATATATATATTTTCAAAATGTTTTTAAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
* * * *
725804 CATATATTATATA-A-GTTTTCAGAATATTTT-AAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
*
725840 --TATATTATATATATATTTTTAAAATGTTTTAAAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
*
725877 TATATATTATATA-A-GTTTTCAAAATGTTTTTAAAAAAC
1 TATATATTATATATATATTTTCAAAATG-TTTTAAAAAAC
*
725915 TATATATTATATA-A-GTTTTCAAAATGTTTTTAAAAAAC
1 TATATATTATATATATATTTTCAAAATG-TTTTAAAAAAC
* *
725953 TATATATTATATA-A-GTTTTCAAAATATTTT-AAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
725989 TATATA-T-TATATATATTTTCAAAATGTTTTAAAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
* *
726026 TATATATTATACA-A-GTTTTCAAAATGTTTT-AAAAAC
1 TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
726062 TATATTATATATATATATATT
1 TATA-TAT-TATATATATATT
726083 AAAAACGAAA
Statistics
Matches: 549, Mismatches: 35, Indels: 82
0.82 0.05 0.12
Matches are distributed among these distances:
34 15 0.03
35 40 0.07
36 92 0.17
37 107 0.19
38 136 0.25
39 50 0.09
40 53 0.10
41 22 0.04
42 11 0.02
43 3 0.01
44 14 0.03
45 6 0.01
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (39 bp):
TATATATTATATATATATTTTCAAAATGTTTTAAAAAAC
Found at i:726685 original size:35 final size:35
Alignment explanation
Indices: 726639--726710 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
726629 TAAACCAAAA
* *
726639 AATAAGTCTATTCATCAAGTGACATGACTTATTAT
1 AATAAATCTATTCACCAAGTGACATGACTTATTAT
*
726674 AATAAATCTATTCACCAAGTGATATGACTTATTAT
1 AATAAATCTATTCACCAAGTGACATGACTTATTAT
726709 AA
1 AA
726711 ATGGCATCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (35 bp):
AATAAATCTATTCACCAAGTGACATGACTTATTAT
Found at i:731506 original size:14 final size:14
Alignment explanation
Indices: 731476--731520 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
731466 GAATAGTTAT
731476 AAAAAGAG-AAATG-
1 AAAAAGAGCAAA-GA
731489 AAAAAGAGCAAAGA
1 AAAAAGAGCAAAGA
*
731503 AAAAAAAGCAAA-A
1 AAAAAGAGCAAAGA
731516 AAAAA
1 AAAAA
731521 AAAAAGAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 15 0.52
14 14 0.48
ACGTcount: A:0.78, C:0.04, G:0.16, T:0.02
Consensus pattern (14 bp):
AAAAAGAGCAAAGA
Found at i:731510 original size:16 final size:15
Alignment explanation
Indices: 731489--731539 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
731479 AAGAGAAATG
731489 AAAAAGAGCAAAGAAA
1 AAAAAGA-CAAAGAAA
* *
731505 AAAAAGCAAAAAAAAA
1 AAAAAG-ACAAAGAAA
731521 AAAAAGAACAAAGAAA
1 AAAAAG-ACAAAGAAA
731537 AAA
1 AAA
731540 CAAGGAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 28 0.97
17 1 0.03
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAGACAAAGAAA
Found at i:731521 original size:14 final size:14
Alignment explanation
Indices: 731489--731523 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
731479 AAGAGAAATG
* *
731489 AAAAAGAGCAAAGA
1 AAAAAAAGCAAAAA
731503 AAAAAAAGCAAAAA
1 AAAAAAAGCAAAAA
731517 AAAAAAA
1 AAAAAAA
731524 AAGAACAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.83, C:0.06, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAAAGCAAAAA
Found at i:731550 original size:17 final size:16
Alignment explanation
Indices: 731498--731551 Score: 65
Period size: 17 Copynumber: 3.3 Consensus size: 16
731488 GAAAAAGAGC
*
731498 AAAGAAAAAAAAGCAA
1 AAAGAAAAAAAAGGAA
*
731514 AAA-AAAAAAAAAGAA
1 AAAGAAAAAAAAGGAA
731529 CAAAGAAAAAACAAGGAA
1 -AAAGAAAAAA-AAGGAA
731547 AAAGA
1 AAAGA
731552 GGACAAGAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
15 10 0.31
16 6 0.19
17 11 0.34
18 5 0.16
ACGTcount: A:0.81, C:0.06, G:0.13, T:0.00
Consensus pattern (16 bp):
AAAGAAAAAAAAGGAA
Found at i:732976 original size:76 final size:75
Alignment explanation
Indices: 732849--733098 Score: 278
Period size: 76 Copynumber: 3.3 Consensus size: 75
732839 GAAAGAAAAC
* * * * *
732849 ATTTCATTGCACTCAAGATT-TTTTTCTTGAAAC-ATATTTTATCTCGATTGAGACAATTTTTAC
1 ATTTCATTTCACTCAAGATTATTTTTCTTAAAACAATA-TTTGTCTTGCTTGAGACAATTTTTAC
732912 TCAAAACAAGA
65 TCAAAACAAGA
* *
732923 TATTTCATTTCACTGCATG-TTGTTTTTCTTAAAACAATATTTGTCTTGCTTGAGACAATTTTTA
1 -ATTTCATTTCACT-CAAGATTATTTTTCTTAAAACAATATTTGTCTTGCTTGAGACAATTTTTA
*
732987 CTCGAAACAAG-
64 CTCAAAACAAGA
* * * **
732998 ATTT-ATTTCACTCAAGATTATTTTTCCTAAAACAAGATTTGTCTTGCTTAAGACGGTTTTTACT
1 ATTTCATTTCACTCAAGATTATTTTTCTTAAAACAATATTTGTCTTGCTTGAGACAATTTTTACT
733062 CGAAAA-AAGA
66 C-AAAACAAGA
* *
733072 CATTTCATTTCAATCAATATTATTTTT
1 -ATTTCATTTCACTCAAGATTATTTTT
733099 AAGGAAGATT
Statistics
Matches: 150, Mismatches: 17, Indels: 15
0.82 0.09 0.08
Matches are distributed among these distances:
72 3 0.02
73 53 0.35
74 7 0.05
75 18 0.12
76 66 0.44
77 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.43
Consensus pattern (75 bp):
ATTTCATTTCACTCAAGATTATTTTTCTTAAAACAATATTTGTCTTGCTTGAGACAATTTTTACT
CAAAACAAGA
Found at i:733038 original size:73 final size:75
Alignment explanation
Indices: 732812--733098 Score: 271
Period size: 76 Copynumber: 3.8 Consensus size: 75
732802 TAAAATATAC
* * * * * * *
732812 TTTGTCTCGCTTGAGGC-AGTTTTACTTGAAAGAAAACATTTCATTGCACTCAAGATT-TTTTTC
1 TTTGTCTTGCTTGAGACAATTTTTACTCGAAACAAGA-ATTTCATTTCACTCAAGATTATTTTTC
* * *
732875 TTGAAACATA-T
65 CTAAAACA-AGA
* * * * * *
732886 TTTATCTCGATTGAGACAATTTTTACTCAAAACAAGATATTTCATTTCACTGCATG-TTGTTTTT
1 TTTGTCTTGCTTGAGACAATTTTTACTCGAAACAAGA-ATTTCATTTCACT-CAAGATTATTTTT
* *
732950 CTTAAAACAATA
64 CCTAAAACAAGA
732962 TTTGTCTTGCTTGAGACAATTTTTACTCGAAACAAG-ATTT-ATTTCACTCAAGATTATTTTTCC
1 TTTGTCTTGCTTGAGACAATTTTTACTCGAAACAAGAATTTCATTTCACTCAAGATTATTTTTCC
733025 TAAAACAAGA
66 TAAAACAAGA
* ** * * *
733035 TTTGTCTTGCTTAAGACGGTTTTTACTCGAAAAAAGACATTTCATTTCAATCAATATTATTTTT
1 TTTGTCTTGCTTGAGACAATTTTTACTCGAAACAAGA-ATTTCATTTCACTCAAGATTATTTTT
733099 AAGGAAGATT
Statistics
Matches: 178, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
72 3 0.02
73 57 0.32
74 18 0.10
75 33 0.19
76 67 0.38
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (75 bp):
TTTGTCTTGCTTGAGACAATTTTTACTCGAAACAAGAATTTCATTTCACTCAAGATTATTTTTCC
TAAAACAAGA
Found at i:733058 original size:36 final size:36
Alignment explanation
Indices: 732945--733051 Score: 99
Period size: 36 Copynumber: 2.9 Consensus size: 36
732935 CTGCATGTTG
* * *
732945 TTTTTCTTAAAACAATATTTGTCTTGCTTGAGACAA
1 TTTTTCCTAAAACAAGATTTGTCTTGCTTAAGACAA
* * * * * **
732981 TTTTTACTCGAAACAAGATTTAT-TTCACTCAAGATTA
1 TTTTTCCT-AAAACAAGATTTGTCTT-GCTTAAGACAA
733018 TTTTTCCTAAAACAAGATTTGTCTTGCTTAAGAC
1 TTTTTCCTAAAACAAGATTTGTCTTGCTTAAGAC
733052 GGTTTTTACT
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
36 26 0.50
37 26 0.50
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.42
Consensus pattern (36 bp):
TTTTTCCTAAAACAAGATTTGTCTTGCTTAAGACAA
Found at i:733163 original size:39 final size:39
Alignment explanation
Indices: 733102--733323 Score: 261
Period size: 39 Copynumber: 5.7 Consensus size: 39
733092 TATTTTTAAG
* *
733102 GAAGATTTTATCTCTCTTGAGATAGTTTACCTCGAAACA
1 GAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACA
*
733141 GAAGATTTTATCTCGCTCGAGATAGTTTCCCTCGAAACA
1 GAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACA
* *
733180 GAAAATTTTATCTCGCTTGAGATAGTTTCCCTTGAAACA
1 GAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACA
* * * *
733219 GAAGATTTTGTCTCACTTGAGATAGTTTCACTTGAAACA
1 GAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACA
* * * * * *
733258 GAAGAATTTTGTCTCTCTTGAGACAATTTCTCTTGAAACA
1 GAAG-ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACA
* *
733298 -AAG--TTTATCTCCCTTGAGACAGTTTC
1 GAAGATTTTATCTCGCTTGAGATAGTTTC
733324 TATTGAAACA
Statistics
Matches: 165, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
36 20 0.12
39 114 0.69
40 31 0.19
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (39 bp):
GAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACA
Found at i:733427 original size:65 final size:65
Alignment explanation
Indices: 733305--733466 Score: 213
Period size: 65 Copynumber: 2.5 Consensus size: 65
733295 ACAAAGTTTA
733305 TCTCCCTTGAGACAGTTTCTATTGAAACACAAATCTTTAAGATCCTTTCCCTTGAAAAGAATTTT
1 TCTCCCTTGAGACAGTTTCTATTGAAACA-AAATCTTTAAGATCCTTTCCCTTGAAAA-AATTTT
733370 -G
64 CG
* * * *
733371 TCTCCCTTAAGACAATTTC-ATTTGAAACAAAATCTTTGAATAT-GTTTCCCTTGAAAAAATTTT
1 TCTCCCTTGAGACAGTTTCTA-TTGAAACAAAATCTTT-AAGATCCTTTCCCTTGAAAAAATTTT
733434 CG
64 CG
* *
733436 TCTCCCTTGAGACAGTCTCTCTTGAAACAAA
1 TCTCCCTTGAGACAGTTTCTATTGAAACAAA
733467 GTTTGTCTCT
Statistics
Matches: 84, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
64 6 0.07
65 49 0.58
66 29 0.35
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (65 bp):
TCTCCCTTGAGACAGTTTCTATTGAAACAAAATCTTTAAGATCCTTTCCCTTGAAAAAATTTTCG
Found at i:733562 original size:102 final size:101
Alignment explanation
Indices: 733350--733568 Score: 257
Period size: 102 Copynumber: 2.2 Consensus size: 101
733340 TTTAAGATCC
* * *
733350 TTTCCCTTGAAA-AGAATTTTGTCTCCCTTAAGACAATTTCATTTGAAACAAAATCTTTGAATAT
1 TTTCCCTTGAAACA-AAGTTTGTCTCCCGTAAGACAATTTCATTTGAAACAAAATATTTGAATAT
733414 GTTTCCCTTGAAAAAATTTTCGTCTCCCTTGAGACAG
65 GTTTCCCTTGAAAAAATTTTCGTCTCCCTTGAGACAG
* * * * * *
733451 TCTCTCTTGAAACAAAGTTTGTCTCTCGTGAGACAGTTTC-TCTTGAAACACAAATATTTTAGAT
1 TTTCCCTTGAAACAAAGTTTGTCTCCCGTAAGACAATTTCAT-TTGAAACA-AAATATTTGA-AT
* * *
733515 -TTTTTCCCTTGAAACGAATTTT-GTCTCCCTTGAGATAG
63 ATGTTTCCCTTGAAA-AAATTTTCGTCTCCCTTGAGACAG
733553 TTTCCCTTGAAACAAA
1 TTTCCCTTGAAACAAA
733569 ATCTTTGAAT
Statistics
Matches: 99, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
100 1 0.01
101 39 0.39
102 51 0.52
103 8 0.08
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (101 bp):
TTTCCCTTGAAACAAAGTTTGTCTCCCGTAAGACAATTTCATTTGAAACAAAATATTTGAATATG
TTTCCCTTGAAAAAATTTTCGTCTCCCTTGAGACAG
Found at i:733565 original size:167 final size:166
Alignment explanation
Indices: 733265--734132 Score: 1265
Period size: 167 Copynumber: 5.2 Consensus size: 166
733255 ACAGAAGAAT
* * * *
733265 TTTGTCTCTCTTGAGACAATTTCTCTTGAAACAAAGTTTATCTCCCTTGAGACAGTTTCTATTGA
1 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGA
* * * * **
733330 AACACAAATCTTTAAGATCCTTTCCCTTGAAAAGAATTTTGTCTCCCTTAAGACAATTTCATTTG
66 AACACAAATCTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCCCTTGAGACAGTTTCCCTTG
733395 AAACAAAATCTTTGAATATGTTTCCCTTGAAA-AAA
131 AAACAAAATCTTTGAATATGTTTCCCTTGAAACAAA
* * *
733430 TTTTCGTCTCCCTTGAGACAGTCTCTCTTGAAACAAAGTTTGTCTCTCGTGAGACAGTTTCTCTT
1 -TTT-GTCTCCCTTGAGACAGTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTT
* * ** * *
733495 GAAACACAAATATTTTAGATTTTTTCCCTTGAAACGAATTTTGTCTCCCTTGAGATAGTTTCCCT
64 GAAACACAAATCTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCCCTTGAGACAGTTTCCCT
*
733560 TGAAACAAAATCTTTGAATATGTTTCTCTTGAAACAAA
129 TGAAACAAAATCTTTGAATATGTTTCCCTTGAAACAAA
* *
733598 TTTCGTCTCCCTTGAGACAATTTCTATTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTG
1 TTT-GTCTCCCTTGAGACAGTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTG
* * * *
733663 AAACATAAATCTTTGAAATCGTTTCCCTTGAAACA-AATTTTGTCTCCATTGAGACAATTTCCCT
65 AAACACAAATCTTTGAGATCGTTTCCCTTGAAA-AGAATTTTGTCTCCCTTGAGACAGTTTCCCT
733727 TGAAACAAAATCTTTGAATATGTTTCCCTTGAAACAAA
129 TGAAACAAAATCTTTGAATATGTTTCCCTTGAAACAAA
* *
733765 TTTCATCTCCCTTGAGACAGTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCATG
1 TTT-GTCTCCCTTGAGACAGTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTG
* * * * *
733830 AAACACAAATCTTTGAGATCATTTTCCTTGAAATGAATTTTATCTCCCTTGAGATAGTTTCCCTT
65 AAACACAAATCTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCCCTTGAGACAGTTTCCCTT
*
733895 GAAACAAAATCTTTGTATATGTTTCCCTTGAAACAAA
130 GAAACAAAATCTTTGAATATGTTTCCCTTGAAACAAA
* * *
733932 -TTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAGTTTATCTCTCTTGAGACAATTTCTCTTGA
1 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGA
733996 AACACAAATCTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCCCTTGAGACAGTTTCCCTTG
66 AACACAAATCTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCCCTTGAGACAGTTTCCCTTG
* * *
734061 AAACACCAATCTTTGAATCTGTTTCTCTTGAAACAAA
131 AAACA-AAATCTTTGAATATGTTTCCCTTGAAACAAA
* **
734098 TTTTATCTCCCTTGAGACAACTTCTCTTGAAACAA
1 -TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAA
734133 GAAATCTTTG
Statistics
Matches: 630, Mismatches: 65, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
165 122 0.19
166 32 0.05
167 443 0.70
168 33 0.05
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (166 bp):
TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGA
AACACAAATCTTTGAGATCGTTTCCCTTGAAAAGAATTTTGTCTCCCTTGAGACAGTTTCCCTTG
AAACAAAATCTTTGAATATGTTTCCCTTGAAACAAA
Found at i:733608 original size:65 final size:64
Alignment explanation
Indices: 733453--733633 Score: 211
Period size: 65 Copynumber: 2.8 Consensus size: 64
733443 TGAGACAGTC
* * * *
733453 TCTCTTGAAACAAAGTTTGTCTCTCGTGAGACAGTTTCTCTTGAAACACAAATATTTTAGATTTT
1 TCTCTTGAAACAAA-TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA-AAATATTTGAGATTGT
733518 T
64 T
* * * * *
733519 TCCCTTGAAACGAATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAAATCTTTGA-ATATGT
1 TCTCTTGAAAC-AAATTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATATTTGAGAT-TGT
733583 T
64 T
* *
733584 TCTCTTGAAACAAATTTCGTCTCCCTTGAGACAATTTCTATTGAAACAAA
1 TCTCTTGAAACAAATTT-GTCTCCCTTGAGACAGTTTCTCTTGAAACAAA
733634 GTTTGTCTCC
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
64 7 0.07
65 49 0.51
66 39 0.40
67 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (64 bp):
TCTCTTGAAACAAATTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATATTTGAGATTGTT
Found at i:733656 original size:101 final size:102
Alignment explanation
Indices: 733517--733735 Score: 325
Period size: 102 Copynumber: 2.2 Consensus size: 102
733507 TTTTAGATTT
* * * *
733517 TTTCCCTTGAAACGAATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACA-AAATCTTTGAATAT
1 TTTCCATTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACATAAATCTTTGAA-AT
* *
733581 -GTTTCTCTTGAAACAAATTTCGTCTCCCTTGAGACAA
65 CGTTTCCCTTGAAACAAATTTCGTCTCCATTGAGACAA
* *
733618 TTTCTATTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAATCTTTGAAATC
1 TTTCCATTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACATAAATCTTTGAAATC
*
733683 GTTTCCCTTGAAACAAATTTTGTCTCCATTGAGACAA
66 GTTTCCCTTGAAACAAATTTCGTCTCCATTGAGACAA
*
733720 TTTCCCTTGAAACAAA
1 TTTCCATTGAAACAAA
733736 ATCTTTGAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
101 46 0.44
102 59 0.56
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (102 bp):
TTTCCATTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACATAAATCTTTGAAATC
GTTTCCCTTGAAACAAATTTCGTCTCCATTGAGACAA
Found at i:733765 original size:65 final size:65
Alignment explanation
Indices: 733624--733800 Score: 275
Period size: 65 Copynumber: 2.7 Consensus size: 65
733614 ACAATTTCTA
*
733624 TTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAATCTTTGAAATCGTTTCC
1 TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA-AAATCTTTGAAATCGTTTCC
733689 C
65 C
* * *
733690 TTGAAACAAATTTTGTCTCCATTGAGACAATTTCCCTTGAAACAAAATCTTTGAATAT-GTTTCC
1 TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCTTTGAA-ATCGTTTCC
733754 C
65 C
**
733755 TTGAAACAAATTTCATCTCCCTTGAGACAGTTTCTCTTGAAACAAA
1 TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAA
733801 GTTTGTCTCC
Statistics
Matches: 101, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
65 59 0.58
66 42 0.42
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.36
Consensus pattern (65 bp):
TTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCTTTGAAATCGTTTCCC
Found at i:733795 original size:36 final size:35
Alignment explanation
Indices: 733108--734233 Score: 434
Period size: 36 Copynumber: 32.9 Consensus size: 35
733098 TAAGGAAGAT
* * * *
733108 TTTATCTCTCTTGAGATAGTTTACCTCGAAACAGAAGA
1 TTTATCTCCCTTGAGACAGTTTCCCTTGAAAC--AA-A
* * * *
733146 TTTTATCTCGCTCGAGATAGTTTCCCTCGAAACAGAAAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAAC---AAA
* *
733185 TTTTATCTCGCTTGAGATAGTTTCCCTTGAAACAGAAGA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAAC--AA-A
* * * *
733224 TTTTGTCTCACTTGAGATAGTTTCACTTGAAACAGAAGAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAAC---A-AA
* * * *
733264 TTTTGTCTCTCTTGAGACAATTTCTCTTGAAACAAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
**
733300 GTTTATCTCCCTTGAGACAGTTTCTATTGAAACACAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACA-AA
* *
733337 ---ATCT---TTAAGATC-CTTTCCCTTGAAA-AGAA
1 TTTATCTCCCTTGAGA-CAGTTTCCCTTGAAACA-AA
* * * **
733366 TTTTGTCTCCCTTAAGACAATTTCATTTGAAACAAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
*
733402 ---ATCT---TTGA-ATATGTTTCCCTTGAAA-AAA
1 TTTATCTCCCTTGAGACA-GTTTCCCTTGAAACAAA
* * *
733430 TTTTCGTCTCCCTTGAGACAGTCTCTCTTGAAACAAA
1 -TTT-ATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
* * * *
733467 GTTTGTCTCTCGTGAGACAGTTTCTCTTGAAACACAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACA-AA
* *** *
733504 -ATAT-T---TT-AGATTTTTTCCCTTGAAACGAAT
1 TTTATCTCCCTTGAGACAGTTTCCCTTGAAAC-AAA
* *
733534 TTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAA
1 TTTATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
* *
733569 ---ATCT---TTGA-ATATGTTTCTCTTGAAACAAA
1 TTTATCTCCCTTGAGACA-GTTTCCCTTGAAACAAA
* * **
733598 TTTCGTCTCCCTTGAGACAATTTCTATTGAAACAAA
1 TTT-ATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
* *
733634 GTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACA-AA
*
733671 ---ATCT---TTGAAATC-GTTTCCCTTGAAACAAA
1 TTTATCTCCCTTGAGA-CAGTTTCCCTTGAAACAAA
* * *
733700 TTTTGTCTCCATTGAGACAATTTCCCTTGAAACAAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
*
733736 ---ATCT---TTGA-ATATGTTTCCCTTGAAACAAA
1 TTTATCTCCCTTGAGACA-GTTTCCCTTGAAACAAA
*
733765 TTTCATCTCCCTTGAGACAGTTTCTCTTGAAACAAA
1 TTT-ATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
* * *
733801 GTTTGTCTCCCTTGAGACAGTTTCTCATGAAACACAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACA-AA
* * *
733838 ---ATCT---TTGAGATCA-TTTTCCTTGAAATGAAT
1 TTTATCTCCCTTGAGA-CAGTTTCCCTTGAAA-CAAA
*
733868 TTTATCTCCCTTGAGATAGTTTCCCTTGAAACAAA
1 TTTATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
* *
733903 ---ATCT---TTGTATA-TGTTTCCCTTGAAACAAA
1 TTTATCTCCCTTG-AGACAGTTTCCCTTGAAACAAA
* *
733932 -TTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAA
1 TTTATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
* * *
733966 GTTTATCTCTCTTGAGACAATTTCTCTTGAAACACAA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACA-AA
734003 ---ATCT---TTGAGATC-GTTTCCCTTGAAA-AGAA
1 TTTATCTCCCTTGAGA-CAGTTTCCCTTGAAACA-AA
* *
734032 TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACACCA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACA-AA
* *
734069 ---ATCT---TTGA-ATCTGTTTCTCTTGAAACAAA
1 TTTATCTCCCTTGAGA-CAGTTTCCCTTGAAACAAA
** *
734098 TTTTATCTCCCTTGAGACAACTTCTCTTGAAACAAGA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACAA-A
* * **
734135 --AATCT---TTGACATC-GTTT-CCTTGAAATGAA
1 TTTATCTCCCTTGAGA-CAGTTTCCCTTGAAACAAA
* *
734164 TTT-TGTCCCTCTTGAGACAGTTTCCCTTGTAACAAA
1 TTTATCT-CC-CTTGAGACAGTTTCCCTTGAAACAAA
* *
734200 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 -TTTATCTCCCTTGAGACAGTTTCCCTTGAAACA
734234 CAAAATTTTT
Statistics
Matches: 843, Mismatches: 128, Indels: 235
0.70 0.11 0.19
Matches are distributed among these distances:
28 10 0.01
29 84 0.10
30 114 0.14
31 20 0.02
32 15 0.02
33 46 0.05
34 25 0.03
35 21 0.02
36 339 0.40
37 39 0.05
38 4 0.00
39 92 0.11
40 33 0.04
41 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (35 bp):
TTTATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
Found at i:733814 original size:21 final size:20
Alignment explanation
Indices: 733751--733815 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 20
733741 TGAATATGTT
733751 TCCCTTGAAACAAA-TTTCATC
1 TCCCTTGAAACAAAGTTT--TC
*
733772 TCCCTTGAGAC--AG-TTTC
1 TCCCTTGAAACAAAGTTTTC
733789 T--CTTGAAACAAAGTTTGTC
1 TCCCTTGAAACAAAGTTT-TC
733808 TCCCTTGA
1 TCCCTTGA
733816 GACAGTTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
15 7 0.20
17 5 0.14
18 2 0.06
19 6 0.17
21 15 0.43
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.35
Consensus pattern (20 bp):
TCCCTTGAAACAAAGTTTTC
Found at i:733822 original size:19 final size:18
Alignment explanation
Indices: 733770--733823 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 18
733760 ACAAATTTCA
733770 TCTCCCTTGAGACAG-TT
1 TCTCCCTTGAGACAGTTT
*
733787 TCT--CTTGAAACAAAGTTT
1 TCTCCCTTGAGAC--AGTTT
733805 GTCTCCCTTGAGACAGTTT
1 -TCTCCCTTGAGACAGTTT
733824 CTCATGAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 7 0.24
17 5 0.17
18 2 0.07
19 8 0.28
21 7 0.24
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (18 bp):
TCTCCCTTGAGACAGTTT
Found at i:733860 original size:66 final size:64
Alignment explanation
Indices: 733776--733965 Score: 226
Period size: 66 Copynumber: 2.9 Consensus size: 64
733766 TTCATCTCCC
* *
733776 TTGAGA-CAGTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCATGAAACACAAAT
1 TTGAGATCATTTTC-CTTGAAACAAA-TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA-AAAT
733840 CT
63 CT
* * * * *
733842 TTGAGATCATTTTCCTTGAAATGAATTTTATCTCCCTTGAGATAGTTTCCCTTGAAACAAAATCT
1 TTGAGATCATTTTCCTTGAAA-CAAATTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCT
*
733907 TTG-TAT-ATGTTTCCCTTGAAACAAA-TTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAA
1 TTGAGATCAT-TTT-CCTTGAAACAAATTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAA
733966 GTTTATCTCT
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
63 33 0.31
64 7 0.07
65 17 0.16
66 42 0.39
67 8 0.07
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (64 bp):
TTGAGATCATTTTCCTTGAAACAAATTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCT
Found at i:733889 original size:102 final size:101
Alignment explanation
Indices: 733683--733902 Score: 309
Period size: 102 Copynumber: 2.2 Consensus size: 101
733673 CTTTGAAATC
* *
733683 GTTTCCCTTGAAACAAATTTTGTCTCCATTGAGACAATTTCCCTTGAAACAAAATCTTTGAATAT
1 GTTTCCCTTGAAACAAAGTTTGTCTCCATTGAGACAATTTCCCATGAAACAAAATCTTTGAATAT
733748 GTTTCCCTTGAAACAAATTTCATCTCCCTTGAGACA
66 GTTTCCCTTGAAACAAATTTCATCTCCCTTGAGACA
* * * *
733784 GTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCATGAAACACAAATCTTTGAGAT
1 GTTTCCCTTGAAACAAAGTTTGTCTCCATTGAGACAATTTCCCATGAAACA-AAATCTTTGA-AT
** * *
733849 CAT-TTT-CCTTGAAATGAATTTTATCTCCCTTGAGATA
64 -ATGTTTCCCTTGAAACAAATTTCATCTCCCTTGAGACA
733886 GTTTCCCTTGAAACAAA
1 GTTTCCCTTGAAACAAA
733903 ATCTTTGTAT
Statistics
Matches: 105, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
101 45 0.43
102 53 0.50
103 5 0.05
104 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.36
Consensus pattern (101 bp):
GTTTCCCTTGAAACAAAGTTTGTCTCCATTGAGACAATTTCCCATGAAACAAAATCTTTGAATAT
GTTTCCCTTGAAACAAATTTCATCTCCCTTGAGACA
Found at i:734019 original size:66 final size:67
Alignment explanation
Indices: 733941--734197 Score: 285
Period size: 66 Copynumber: 3.9 Consensus size: 67
733931 ATTGTCTCCC
* * *
733941 TTGAGA-CAGTTTCTCTTGAAACAAAGTTTATCTCTCTTGAGACAATTTCTCTTGAAACACAAAT
1 TTGAGATCAGTTTCTCTTGAAACAAATTTTATCTCCCTTGAGACAATTTCCCTTGAAACACAAAT
734005 CT
66 CT
* * * *
734007 TTGAGATC-GTTTCCCTTGAAA-AGAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACACCAA
1 TTGAGATCAGTTTCTCTTGAAACA-AATTTTATCTCCCTTGAGACAATTTCCCTTGAAACACAAA
734070 TCT
65 TCT
* * * *
734073 TTGA-ATCTGTTTCTCTTGAAACAAATTTTATCTCCCTTGAGACAACTTCTCTTGAAACAAGAAA
1 TTGAGATCAGTTTCTCTTGAAACAAATTTTATCTCCCTTGAGACAATTTCCCTTGAAAC-ACAAA
734137 TCT
65 TCT
* ** * * *
734140 TTGACATC-GTTTC-CTTGAAATGAATTTTGTC-CCTCTTGAGACAGTTTCCCTTGTAACA
1 TTGAGATCAGTTTCTCTTGAAACAAATTTTATCTCC-CTTGAGACAATTTCCCTTGAAACA
734198 AATTTTGTCT
Statistics
Matches: 163, Mismatches: 21, Indels: 15
0.82 0.11 0.08
Matches are distributed among these distances:
65 7 0.04
66 136 0.83
67 17 0.10
68 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (67 bp):
TTGAGATCAGTTTCTCTTGAAACAAATTTTATCTCCCTTGAGACAATTTCCCTTGAAACACAAAT
CT
Found at i:734103 original size:132 final size:132
Alignment explanation
Indices: 733949--734197 Score: 403
Period size: 132 Copynumber: 1.9 Consensus size: 132
733939 CCTTGAGACA
* * *
733949 GTTTCTCTTGAAACAAAGTTTATCTCTCTTGAGACAATTTCTCTTGAAAC-ACAAATCTTTGAGA
1 GTTTCTCTTGAAACAAAGTTTATCTCCCTTGAGACAACTTCTCTTGAAACAACAAATCTTTGACA
734013 TCGTTTCCCTTGAAAAGAATTTTGTCTCC-CTTGAGACAGTTTCCCTTGAAACACCAATCTTTGA
66 TCGTTT-CCTTGAAAAGAATTTTGTC-CCTCTTGAGACAGTTTCCCTTGAAACACCAATCTTTGA
734077 ATCT
129 ATCT
* *
734081 GTTTCTCTTGAAACAAATTTTATCTCCCTTGAGACAACTTCTCTTGAAACAAGAAATCTTTGACA
1 GTTTCTCTTGAAACAAAGTTTATCTCCCTTGAGACAACTTCTCTTGAAACAACAAATCTTTGACA
* *
734146 TCGTTTCCTTGAAATGAATTTTGTCCCTCTTGAGACAGTTTCCCTTGTAACA
66 TCGTTTCCTTGAAAAGAATTTTGTCCCTCTTGAGACAGTTTCCCTTGAAACA
734198 AATTTTGTCT
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
131 2 0.02
132 88 0.81
133 18 0.17
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (132 bp):
GTTTCTCTTGAAACAAAGTTTATCTCCCTTGAGACAACTTCTCTTGAAACAACAAATCTTTGACA
TCGTTTCCTTGAAAAGAATTTTGTCCCTCTTGAGACAGTTTCCCTTGAAACACCAATCTTTGAAT
CT
Found at i:734201 original size:102 final size:103
Alignment explanation
Indices: 734081--734297 Score: 296
Period size: 102 Copynumber: 2.1 Consensus size: 103
734071 CTTTGAATCT
734081 GTTTCTCTTGAAACAAATTTTATCTCCCTTGAGACAACTTCTCTTGAAACA-AGAAATCTTTGAC
1 GTTTCTCTTGAAACAAATTTTATCTCCCTTGAGACAACTTCTCTTGAAACACA-AAATCTTTGAC
* *
734145 ATCGTTT-CCTTGAAATGA-ATTTTGTCCCTCTTGAGACA
65 ATCATTTCCCTTGAAA-AATATTTTGTCCCTCTTGAGACA
* * * ** * *
734183 GTTTCCCTTGTAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATTTTTGAGA
1 GTTTCTCTTGAAACAAATTTTATCTCCCTTGAGACAACTTCTCTTGAAACACAAAATCTTTGACA
* *
734248 TCATTTCCCTTGAAAAATATTTTGTCTCTCTTGAGACG
66 TCATTTCCCTTGAAAAATATTTTGTCCCTCTTGAGACA
734286 GTTTCTCTTGAA
1 GTTTCTCTTGAA
734298 GCCATCACCC
Statistics
Matches: 99, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
102 62 0.63
103 37 0.37
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (103 bp):
GTTTCTCTTGAAACAAATTTTATCTCCCTTGAGACAACTTCTCTTGAAACACAAAATCTTTGACA
TCATTTCCCTTGAAAAATATTTTGTCCCTCTTGAGACA
Found at i:734237 original size:38 final size:37
Alignment explanation
Indices: 734162--734297 Score: 105
Period size: 36 Copynumber: 3.9 Consensus size: 37
734152 CCTTGAAATG
*
734162 AATTTTGTCCCTCTTGAGACAGTTTCCCTTGTAAC-A
1 AATTTTGTCCCTCTTGAGACAGTTTCCCTTGAAACAA
*
734198 AATTTTGTCTCC-CTTGAGACAGTTTCTCTTGAAACACA
1 AATTTTGTC-CCTCTTGAGACAGTTTCCCTTGAAACA-A
*
734236 AA--AT-T---T-TTGAGATCA-TTTCCCTTGAAA-AA
1 AATTTTGTCCCTCTTGAGA-CAGTTTCCCTTGAAACAA
* * * *
734265 TATTTTGTCTCTCTTGAGACGGTTTCTCTTGAA
1 AATTTTGTCCCTCTTGAGACAGTTTCCCTTGAA
734298 GCCATCACCC
Statistics
Matches: 79, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
29 2 0.03
30 1 0.01
31 18 0.23
32 3 0.04
35 3 0.04
36 47 0.59
37 2 0.03
38 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (37 bp):
AATTTTGTCCCTCTTGAGACAGTTTCCCTTGAAACAA
Found at i:735196 original size:23 final size:23
Alignment explanation
Indices: 735170--735220 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
735160 AGGGCATTTG
735170 GGGGGTTTTTTGAGGTAGTTTAT
1 GGGGGTTTTTTGAGGTAGTTTAT
735193 GGGGGTTTTTTGAGGTAGTTTAT
1 GGGGGTTTTTTGAGGTAGTTTAT
735216 GGGGG
1 GGGGG
735221 GGGTTTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.12, C:0.00, G:0.45, T:0.43
Consensus pattern (23 bp):
GGGGGTTTTTTGAGGTAGTTTAT
Found at i:737917 original size:21 final size:21
Alignment explanation
Indices: 737891--737944 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
737881 GAAAATGTCT
737891 CAAAAGTATCGATACCTTACA
1 CAAAAGTATCGATACCTTACA
737912 CAAAAGTATCGATACCTTACA
1 CAAAAGTATCGATACCTTACA
737933 CAAAAGTATCGA
1 CAAAAGTATCGA
737945 GACTTGGGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.22
Consensus pattern (21 bp):
CAAAAGTATCGATACCTTACA
Found at i:739970 original size:12 final size:12
Alignment explanation
Indices: 739953--739998 Score: 69
Period size: 12 Copynumber: 3.9 Consensus size: 12
739943 TAGGTAGATA
739953 AAGAAGAGGAA-G
1 AAGAAGA-GAAGG
739965 AAGAAGAGAAGG
1 AAGAAGAGAAGG
739977 AAGAAGAGAAGG
1 AAGAAGAGAAGG
739989 AAGAAG-GAAG
1 AAGAAGAGAAG
739999 ATAGTAGGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
11 7 0.21
12 26 0.79
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (12 bp):
AAGAAGAGAAGG
Found at i:741169 original size:19 final size:19
Alignment explanation
Indices: 741127--741170 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
741117 CTATATGTTG
741127 GTGTTGGATATGGTTTCTC
1 GTGTTGGATATGGTTTCTC
* *
741146 ATGTTGGATATGGTTTCTT
1 GTGTTGGATATGGTTTCTC
741165 GTGTTG
1 GTGTTG
741171 CAACGGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.11, C:0.07, G:0.32, T:0.50
Consensus pattern (19 bp):
GTGTTGGATATGGTTTCTC
Found at i:745005 original size:201 final size:202
Alignment explanation
Indices: 744633--745088 Score: 657
Period size: 201 Copynumber: 2.3 Consensus size: 202
744623 ATACTACCAT
* * ** * * *
744633 TACTTTTATTCTAGTATGGTTCTCAAACAATTTGCACACAACAAAGTATCGATACCCATATATA-
1 TACTTGTATTCCAGTATGCATCTCAAACAATTTGCACGCAAAAAAGTATCGATACACATATA-AC
** *
744697 AAGTATAAATACTTAGAATTTTGAAACCTATTACTTTAAAGTAATAGGTAAATTTACAATATAAA
65 AAGTATCGATACTTAGAATTTTGAAACCTATTACTTTAAAGTAATAGGTAAATATACAATATAAA
* * * * *
744762 TGGTAAAAATCTA-CTGGTTTAATGATAATTGGCGTAAACATCAAGAATCAATAGTTATTATATA
130 CGGTAAAAATCTATCTGATTTAATGATAATAGGCGTAAACATCAAGTATCAATACTTATTATATA
744826 AGTATCGA
195 AGTATCGA
* *
744834 TACTTGTATTCCAGTATACATCTCAAACAATTTGCACGCAAAAAAGTATCAATACACATATAACA
1 TACTTGTATTCCAGTATGCATCTCAAACAATTTGCACGCAAAAAAGTATCGATACACATATAACA
* * * *
744899 AGTGTCGGTACTTAGAATTTTGATACCTATTACTTTAAAGTAATAGATAAATATACAATATAAAC
66 AGTATCGATACTTAGAATTTTGAAACCTATTACTTTAAAGTAATAGGTAAATATACAATATAAAC
* * *
744964 GGTAACAATCTATC-GATTTAATGATAATAGGCATCAACATCAAGTATCAATACTTATTATATAA
131 GGTAAAAATCTATCTGATTTAATGATAATAGGCGTAAACATCAAGTATCAATACTTATTATATAA
745028 GTATCGA
196 GTATCGA
*
745035 TACTTGTATTCCAGTATGCATCTCAAATAATTTGCACGCAAAAAAGTATCGATA
1 TACTTGTATTCCAGTATGCATCTCAAACAATTTGCACGCAAAAAAGTATCGATA
745089 ATTAGAATTT
Statistics
Matches: 226, Mismatches: 27, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
200 1 0.00
201 224 0.99
202 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (202 bp):
TACTTGTATTCCAGTATGCATCTCAAACAATTTGCACGCAAAAAAGTATCGATACACATATAACA
AGTATCGATACTTAGAATTTTGAAACCTATTACTTTAAAGTAATAGGTAAATATACAATATAAAC
GGTAAAAATCTATCTGATTTAATGATAATAGGCGTAAACATCAAGTATCAATACTTATTATATAA
GTATCGA
Found at i:745165 original size:180 final size:181
Alignment explanation
Indices: 744910--745269 Score: 541
Period size: 180 Copynumber: 2.0 Consensus size: 181
744900 GTGTCGGTAC
* *
744910 TTAGAATTTTGATACCTATTACTTTAAAGTAATAGATAAATATACAATATAAACGGTAACAATCT
1 TTAGAATTTCGATACCTAATACTTTAAAGTAATAGATAAATATACAATATAAACGGTAACAATCT
* *
744975 ATCGATTTAATGATAATAGGCATCAACATCAAGTATCAATACTTATTATAT-AAGTATCGATACT
66 ACCGATTTAATGATAATAGGCATAAACATCAAGTATCAATACTTATTATATCAA-TATCGATACT
* *
745039 TGTATTCCAGTATGCATCTCAAATAATTTGCAC-GCAAAAAAGTATCGATAA
130 TGTATTCCAGTATGCATCTCAAACAATTTGCACTCCAAAAAAGTATCGATAA
* *
745090 TTAGAATTTCGA-ATCCTAATACTTTAAAGTAATATG-TAAATTTACAATGTAAACGGTAA-AAT
1 TTAGAATTTCGATA-CCTAATACTTTAAAGTAATA-GATAAATATACAATATAAACGGTAACAA-
* * *
745152 TCTACCGATTTAATGATAATAGGCGTAAACATCAAGTATCGATAGTTATTATATCAATATCGATA
63 TCTACCGATTTAATGATAATAGGCATAAACATCAAGTATCAATACTTATTATATCAATATCGATA
*
745217 CTTGTATTCCAGTATGCATCTCAAACAATTTGCACTCCAGAAAAGTATCGATA
128 CTTGTATTCCAGTATGCATCTCAAACAATTTGCACTCCAAAAAAGTATCGATA
745270 CACGCATAAC
Statistics
Matches: 163, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
179 3 0.02
180 142 0.87
181 18 0.11
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33
Consensus pattern (181 bp):
TTAGAATTTCGATACCTAATACTTTAAAGTAATAGATAAATATACAATATAAACGGTAACAATCT
ACCGATTTAATGATAATAGGCATAAACATCAAGTATCAATACTTATTATATCAATATCGATACTT
GTATTCCAGTATGCATCTCAAACAATTTGCACTCCAAAAAAGTATCGATAA
Found at i:745399 original size:381 final size:381
Alignment explanation
Indices: 744709--745407 Score: 1089
Period size: 381 Copynumber: 1.8 Consensus size: 381
744699 GTATAAATAC
* * *
744709 TTAGAATTTTGAAACCTATTACTTTAAAGTAATAGGTAAATTTACAATATAAATGGTAAAAATCT
1 TTAGAATTTCGAAACCTAATACTTTAAAGTAATAGGTAAATTTACAATATAAACGGTAAAAATCT
* * *
744774 ACTGGTTTAATGATAATTGGCGTAAACATCAAGAATCAATAGTTATTATATAAGTATCGATACTT
66 ACCGATTTAATGATAATAGGCGTAAACATCAAGAATCAATAGTTATTATATAAGTATCGATACTT
* * *
744839 GTATTCCAGTATACATCTCAAACAATTTGCACGCAAAAAAGTATCAATACACATATAACAAGTGT
131 GTATTCCAGTATACATCTCAAACAATTTGCACCCAAAAAAGTATCAATACACACATAACAAGTAT
* *
744904 CGGTACTTAGAATTTTGATACCTATTACTTTAAAGTAATAGATAAATATACAATATAAACGGTAA
196 CGATACTTAGAATTTTGAAACCTATTACTTTAAAGTAATAGATAAATATACAATATAAACGGTAA
* *
744969 CAATCTATCGATTTAATGATAATAGGCATCAACATCAAGTATCAATACTTATTATATAAGTATCG
261 AAATCTATCGATTTAATGATAATAGGCATAAACATCAAGTATCAATACTTATTATATAAGTATCG
745034 ATACTTGTATTCCAGTATGCATCTCAAATAATTTGCACGCAAAAAAGTATCGATAA
326 ATACTTGTATTCCAGTATGCATCTCAAATAATTTGCACGCAAAAAAGTATCGATAA
* * * *
745090 TTAGAATTTCGAATCCTAATACTTTAAAGTAATATGTAAATTTACAATGTAAACGGTAAAATTCT
1 TTAGAATTTCGAAACCTAATACTTTAAAGTAATAGGTAAATTTACAATATAAACGGTAAAAATCT
* *
745155 ACCGATTTAATGATAATAGGCGTAAACATCAAGTATCGATAGTTATTATATCAA-TATCGATACT
66 ACCGATTTAATGATAATAGGCGTAAACATCAAGAATCAATAGTTATTATAT-AAGTATCGATACT
* * * *
745219 TGTATTCCAGTATGCATCTCAAACAATTTGCACTCCAGAAAAGTATCGATACACGCATAACAAGT
130 TGTATTCCAGTATACATCTCAAACAATTTGCAC-CCAAAAAAGTATCAATACACACATAACAAGT
* * * *
745284 ATCGATACTTAGAA-TTTGAAACCTATTACTTTAAAGTAATAGGTAAATTTACAATGTAGACGGT
194 ATCGATACTTAGAATTTTGAAACCTATTACTTTAAAGTAATAGATAAATATACAATATAAACGGT
* *
745348 AAAAATCTATCTG-TTTAATGATAATAGGCGTAAACATCAAGTATCAATACTTTTTATATA
259 AAAAATCTATC-GATTTAATGATAATAGGCATAAACATCAAGTATCAATACTTATTATATA
745408 GGTGTCGTAA
Statistics
Matches: 286, Mismatches: 29, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
381 245 0.86
382 41 0.14
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (381 bp):
TTAGAATTTCGAAACCTAATACTTTAAAGTAATAGGTAAATTTACAATATAAACGGTAAAAATCT
ACCGATTTAATGATAATAGGCGTAAACATCAAGAATCAATAGTTATTATATAAGTATCGATACTT
GTATTCCAGTATACATCTCAAACAATTTGCACCCAAAAAAGTATCAATACACACATAACAAGTAT
CGATACTTAGAATTTTGAAACCTATTACTTTAAAGTAATAGATAAATATACAATATAAACGGTAA
AAATCTATCGATTTAATGATAATAGGCATAAACATCAAGTATCAATACTTATTATATAAGTATCG
ATACTTGTATTCCAGTATGCATCTCAAATAATTTGCACGCAAAAAAGTATCGATAA
Found at i:746194 original size:37 final size:37
Alignment explanation
Indices: 746144--746235 Score: 107
Period size: 36 Copynumber: 2.5 Consensus size: 37
746134 GTGCTTGTGG
*
746144 ATCCTATCTTTAGGAGTTTAAAACATAGAAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAAACATAGAAAAATTCT
* * * * *
746181 ATCCTATTTTTAGGAG-TTGAATCCTAGCAGAATTCT
1 ATCCTATTTTTAGGAGTTTAAAACATAGAAAAATTCT
746217 ATCCTATTTTT-GAGAGTTT
1 ATCCTATTTTTAG-GAGTTT
746236 GAATCCTAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
35 1 0.02
36 29 0.62
37 17 0.36
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAAACATAGAAAAATTCT
Found at i:746222 original size:36 final size:37
Alignment explanation
Indices: 746175--746244 Score: 117
Period size: 36 Copynumber: 1.9 Consensus size: 37
746165 AACATAGAAA
746175 AATTCTATCCTATTTTT-AGGAG-TTGAATCCTAGCAG
1 AATTCTATCCTATTTTTGA-GAGTTTGAATCCTAGCAG
746211 AATTCTATCCTATTTTTGAGAGTTTGAATCCTAG
1 AATTCTATCCTATTTTTGAGAGTTTGAATCCTAG
746245 TAGGATGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
36 20 0.62
37 12 0.38
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (37 bp):
AATTCTATCCTATTTTTGAGAGTTTGAATCCTAGCAG
Found at i:747016 original size:106 final size:109
Alignment explanation
Indices: 746711--747334 Score: 602
Period size: 109 Copynumber: 5.9 Consensus size: 109
746701 GTTCCGAGTC
* * * ** **
746711 CAATATCCTCCGCT-GTGAAGTTGAAATTGGTTATGGAACCGGGAAATTGTTTGTTGACAGTCAG
1 CAATATCCTCCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG
* * *
746775 CCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGT-C-
66 CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
* * * * * *
746817 TAATATCCTTCGCT-GTGAAGTTGAAATTGACTCTG-AA---CGAAA-T-CTTGTTGACAATCAG
1 CAATATCCTCCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG
*
746875 CCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGT-C-
66 CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
* * * *
746917 CAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACAACCAG
1 CAATATCCTCCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG
* *
746981 CTGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGCA
66 CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCA
* * * * ** * * **
747026 CGATATCCTCC-ATCGTGGAGTTGAAA-TCGCGGATGAAACT-GAAAAGTTGTTCATTGACAACC
1 CAATATCCTCCGCTCGTGAAGTTGAAATTGGC-TCTGAAATTGGGAAA-TTGTTTGTTGACAACC
* * *
747088 AGCCGTCCCTTCGTTGTGAAGTTGGACTTGTGTTTTCTCGGGTAGCA
64 AGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCA
* * * * * * * *
747135 CGATATCCTCCG-TCGTGGAGTTGAAATCGGTTCTGGAATTGGGAAGTTGTTCGTTGACAACCAA
1 CAATATCCTCCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG
*
747199 CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGGGTAGCA
66 CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCA
* * * * * * *
747244 CGATATCCTCCG-TCGTGGAGTTGAAATCGGTTCCGAAATTGGGAAATTG-TTGTTGGCAACCAA
1 CAATATCCTCCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG
747307 CCGTCCCTTCGTTGTGAAGTTGAACTTG
66 CCGTCCCTTCGTTGTGAAGTTGAACTTG
747335 ACTCTAGGTA
Statistics
Matches: 449, Mismatches: 54, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
100 84 0.19
101 3 0.01
102 4 0.01
104 3 0.01
105 3 0.01
106 83 0.18
108 50 0.11
109 215 0.48
110 4 0.01
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (109 bp):
CAATATCCTCCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG
CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
Found at i:747993 original size:67 final size:67
Alignment explanation
Indices: 747913--748071 Score: 214
Period size: 67 Copynumber: 2.4 Consensus size: 67
747903 GAAACGAAAT
* *
747913 TTTGTTTTAAGGGAGATA-AAT-TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCATGGGAGAC
1 TTTGTTTCAAGGGA-A-ACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGAC
747976 AAAA
64 AAAA
* * * *
747980 TTTGTTTCGAGGGAAACAATCTCAAAGGTTTTGTGTTTCAAGAGACACTGTCTCAAGGGAGATAA
1 TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
748045 AA
66 AA
**
748047 TTTGTTTCAAGGGAAATTATCTCAA
1 TTTGTTTCAAGGGAAACAATCTCAA
748072 GAGAGACGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 4 0.05
67 76 0.94
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (67 bp):
TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
AA
Found at i:748070 original size:36 final size:36
Alignment explanation
Indices: 747946--748422 Score: 192
Period size: 36 Copynumber: 13.9 Consensus size: 36
747936 AAAGATTTTG
* * * *
747946 TGTTTCAAGAGAAACTGTCTCATGGGAGACAAAATT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
* * **
747982 TGTTTCGAGGGAAACAATCTCAA-AG-G----TTTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
* * * * *
748012 GTGTTTCAAGAGACACTGTCTCAAGGGAGATAAAATT
1 -TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
* *
748049 TGTTTCAAGGGAAATTATCTCAAGAGAGACGAAATT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
** * * * *
748085 CATTTCAAGGGAAA-TGTTTTC-A-A-TG-----TTT
1 TGTTTCAAGGGAAACT-ATCTCAAGAGAGACAAAATT
* * *
748113 ATGTTT-TAGGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGG-GAAACTATCTCAAGAGAGACAAAA-TT
748151 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
** * * * * *
748187 CATTTCAAGGGAAA-TGTTTCCA-A-TG-----TTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
* * * *
748215 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
*
748253 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
** * * * * *
748289 CATTTCAA-GGAAAATGTTTTC-A-A-TG-----TTT
1 TGTTTCAAGGGAAACT-ATCTCAAGAGAGACAAAATT
* * * *
748317 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
*
748355 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAGTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
*
748391 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAA
748423 TGGTGAGCAC
Statistics
Matches: 315, Mismatches: 83, Indels: 86
0.65 0.17 0.18
Matches are distributed among these distances:
28 8 0.03
29 30 0.10
30 16 0.05
31 18 0.06
32 4 0.01
33 4 0.01
34 4 0.01
35 15 0.05
36 119 0.38
37 88 0.28
38 9 0.03
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
Found at i:748165 original size:37 final size:37
Alignment explanation
Indices: 748124--748422 Score: 219
Period size: 37 Copynumber: 8.6 Consensus size: 37
748114 TGTTTTAGGA
*
748124 GAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
* **
748161 GAAACTATCTCAAGAGAGACAAAA-TTCATTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
* ** *
748197 GAAA-TGTTTC--------CAATGTTTATGTTTCAAGA
1 GAAACTGTCTCAAGAGAGACAAAATTT-TGTTTCAAGG
* *
748226 GAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
* * **
748263 GAAACTATCTCAAGAGAGACAAAA-CTCATTTCAA-G
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
* * * *
748298 GAAAATGTTTTC-A-A-TG------TTTATGTTTCAAGA
1 GAAACTG-TCTCAAGAGAGACAAAATTT-TGTTTCAAGG
* *
748328 GAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
* *
748365 GAAACTATCTCAAGAGAGAC-AAAGTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
748401 GAAACTGTCTCAAGAGAGACAA
1 GAAACTGTCTCAAGAGAGACAA
748423 TGGTGAGCAC
Statistics
Matches: 197, Mismatches: 40, Indels: 50
0.69 0.14 0.17
Matches are distributed among these distances:
27 3 0.02
28 3 0.02
29 20 0.10
30 12 0.06
32 1 0.01
33 1 0.01
34 1 0.01
35 11 0.06
36 58 0.29
37 79 0.40
38 8 0.04
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.27
Consensus pattern (37 bp):
GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
Found at i:748177 original size:102 final size:102
Alignment explanation
Indices: 748013--748404 Score: 660
Period size: 102 Copynumber: 3.9 Consensus size: 102
748003 AAAGGTTTTG
* * *
748013 TGTTTCAAGAGACACTGTCTCAAGGGAGATAAAA-TTTGTTTCAAGGGAAATTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
748077 ACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * *
748114 TGTTTTAGGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
748179 ACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
748216 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
* *
748281 ACAAAACTCATTTCAAGGAAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
748318 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
* **
748383 ACAAAGTTTGTTTCAAGGGAAA
66 ACAAAATTCATTTCAAGGGAAA
748405 CTGTCTCAAG
Statistics
Matches: 272, Mismatches: 18, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
101 30 0.11
102 242 0.89
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.30
Consensus pattern (102 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:749944 original size:20 final size:20
Alignment explanation
Indices: 749919--749965 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
749909 TTTTTGTTCC
*
749919 CTTTTTTATTTTTGTTCTTT
1 CTTTTTTATTCTTGTTCTTT
* *
749939 CTTTTTTGTTCTTGTTTTTT
1 CTTTTTTATTCTTGTTCTTT
749959 CTTTTTT
1 CTTTTTT
749966 TACTTCTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.02, C:0.11, G:0.06, T:0.81
Consensus pattern (20 bp):
CTTTTTTATTCTTGTTCTTT
Found at i:749964 original size:33 final size:31
Alignment explanation
Indices: 749920--749981 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 31
749910 TTTTGTTCCC
749920 TTTTTTATTTTTGTT-CTTTCTTTTTTGTTCTTG
1 TTTTTTATTTTT-TTAC-TTCTTTTTT-TTCTTG
*
749953 TTTTTTCTTTTTTTACTTCTTTTTTTTCT
1 TTTTTTATTTTTTTACTTCTTTTTTTTCT
749982 ATTTGCCCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 4 0.15
32 11 0.41
33 12 0.44
ACGTcount: A:0.03, C:0.11, G:0.05, T:0.81
Consensus pattern (31 bp):
TTTTTTATTTTTTTACTTCTTTTTTTTCTTG
Found at i:749975 original size:19 final size:20
Alignment explanation
Indices: 749936--749977 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
749926 ATTTTTGTTC
* *
749936 TTTCTTTTTTGTTCTTGTTT
1 TTTCTTTTTTGTACTTCTTT
749956 TTTCTTTTTT-TACTTCTTT
1 TTTCTTTTTTGTACTTCTTT
749975 TTT
1 TTT
749978 TTCTATTTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.02, C:0.12, G:0.05, T:0.81
Consensus pattern (20 bp):
TTTCTTTTTTGTACTTCTTT
Found at i:753445 original size:36 final size:37
Alignment explanation
Indices: 753399--753470 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 37
753389 GTTTAAAACA
753399 TAGCAAAATTCTATCCTATTTTT-AGGAG-TTGAATCC
1 TAGCAAAATTCTATCCTATTTTTGA-GAGTTTGAATCC
*
753435 TAGCAGAATTCTATCCTATTTTTGAGAGTTTGAATC
1 TAGCAAAATTCTATCCTATTTTTGAGAGTTTGAATC
753471 TTAGTAGGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 25 0.76
37 8 0.24
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (37 bp):
TAGCAAAATTCTATCCTATTTTTGAGAGTTTGAATCC
Found at i:754244 original size:18 final size:18
Alignment explanation
Indices: 754223--754267 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
754213 ACTAAAACCT
* *
754223 TCTTCTTAACCAAGTTCA
1 TCTTCTTAACAAAGGTCA
* *
754241 TCTTCTCAACAAAGGTCT
1 TCTTCTTAACAAAGGTCA
754259 TCTTCTTAA
1 TCTTCTTAA
754268 GTAAGGGTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (18 bp):
TCTTCTTAACAAAGGTCA
Found at i:759647 original size:19 final size:19
Alignment explanation
Indices: 759582--759640 Score: 100
Period size: 19 Copynumber: 3.1 Consensus size: 19
759572 AAAATCAGAG
*
759582 CAGATATCAGAGATCAAAA
1 CAGAAATCAGAGATCAAAA
759601 CAGAAATCAGAGATCAAAA
1 CAGAAATCAGAGATCAAAA
*
759620 CAGAAATCAGAGATCAGAA
1 CAGAAATCAGAGATCAAAA
759639 CA
1 CA
759641 TATATCAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.12
Consensus pattern (19 bp):
CAGAAATCAGAGATCAAAA
Found at i:759656 original size:38 final size:38
Alignment explanation
Indices: 759582--759669 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 38
759572 AAAATCAGAG
* *
759582 CAGATATCAGAGATCAAAACAGAAATCAGAGATCAAAA
1 CAGAAATCAGAGATCAAAACAGAAATCAAAGATCAAAA
* * * ** *
759620 CAGAAATCAGAGATCAGAACATATATCAAATTTCAAAG
1 CAGAAATCAGAGATCAAAACAGAAATCAAAGATCAAAA
*
759658 TAGAAATCAGAG
1 CAGAAATCAGAG
759670 GTAAAACTAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.17
Consensus pattern (38 bp):
CAGAAATCAGAGATCAAAACAGAAATCAAAGATCAAAA
Found at i:760749 original size:55 final size:55
Alignment explanation
Indices: 760679--760912 Score: 371
Period size: 55 Copynumber: 4.3 Consensus size: 55
760669 GGTTTTACAG
* * *
760679 ACATAGTGTCGATACGAAAATTCATAAACTCATTATGAATTTCGTGGGGTTGTAC
1 ACATAGTGCCAATACGAAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCAC
760734 ACATAGTGCCAATACGAAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCAC
1 ACATAGTGCCAATACGAAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCAC
*
760789 ACATAGTGCCAATATCG-AAATTCATAAACTCATTATGAATTTCGTGTGGTTGCAC
1 ACATAGTGCCAATA-CGAAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCAC
* * * * *
760844 ACATAGTGCTAATACGGAAATTCATAAACTCATTATGAATTTTGTGAGGTTACAC
1 ACATAGTGCCAATACGAAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCAC
760899 ACATAGTGCCAATA
1 ACATAGTGCCAATA
760913 TGGAAATTTC
Statistics
Matches: 168, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
54 2 0.01
55 164 0.98
56 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (55 bp):
ACATAGTGCCAATACGAAAATTCATAAACTCATTATGAATTTCGTGGGGTTGCAC
Found at i:768190 original size:16 final size:16
Alignment explanation
Indices: 768171--768203 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
768161 TGAAGTGATA
*
768171 TGATATTTACTTAACT
1 TGATATTTACCTAACT
768187 TGATATTTACCTAACT
1 TGATATTTACCTAACT
768203 T
1 T
768204 ATTCGTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.48
Consensus pattern (16 bp):
TGATATTTACCTAACT
Found at i:769054 original size:6 final size:6
Alignment explanation
Indices: 769049--769078 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
769039 TATATATATG
*
769049 CTTATG CTTATA CTTATA CTTATA CTTATA
1 CTTATA CTTATA CTTATA CTTATA CTTATA
769079 ATTTATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.03, T:0.50
Consensus pattern (6 bp):
CTTATA
Found at i:769099 original size:14 final size:14
Alignment explanation
Indices: 769075--769110 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
769065 TACTTATACT
769075 TATAAT-TTATATA
1 TATAATATTATATA
769088 -AT-ATATTATATA
1 TATAATATTATATA
769100 TATAATATTAT
1 TATAATATTAT
769111 GTAGTTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
11 2 0.10
12 9 0.45
13 2 0.10
14 7 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATAATATTATATA
Found at i:769313 original size:2 final size:2
Alignment explanation
Indices: 769306--769443 Score: 82
Period size: 2 Copynumber: 66.0 Consensus size: 2
769296 CATTGCCACT
* * *
769306 TA TA TA TA TA TA TA TA CT- TA TA CTT TT TA TA TA TA TA CTT TA
1 TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA -TA TA
* * * * * * *
769348 TA CTT TA TA CTT TA TA TA CA TA TA CA CTT TA TA T- TT TA TA GTT
1 TA -TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA
*
769391 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CTT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
*
769434 TA TT TA TA TA
1 TA TA TA TA TA
769444 AATTGAAAAA
Statistics
Matches: 105, Mismatches: 21, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
1 2 0.02
2 96 0.91
3 7 0.07
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.54
Consensus pattern (2 bp):
TA
Found at i:769351 original size:7 final size:7
Alignment explanation
Indices: 769318--769363 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
769308 TATATATATA
769318 TATAC-T
1 TATACTT
769324 TATACTTTT
1 TATAC--TT
*
769333 TATA-TA
1 TATACTT
769339 TATACTT
1 TATACTT
769346 TATACTT
1 TATACTT
769353 TATACTT
1 TATACTT
769360 TATA
1 TATA
769364 TACATATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
6 10 0.29
7 19 0.56
9 5 0.15
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.57
Consensus pattern (7 bp):
TATACTT
Found at i:769516 original size:266 final size:272
Alignment explanation
Indices: 768962--769645 Score: 780
Period size: 266 Copynumber: 2.6 Consensus size: 272
768952 ATGTGTCGTC
* * * * *
768962 AATTTTGGTGAACAAAATCAAATCAATCTGGACCCTTGATAAGATTTGATCTAATGACCATTAAT
1 AATTTTGGTGAACAAAATCAAATCAATTTGGACCCTTGATAAGGTTTGATCCAATG-GCATTATT
* * *
769027 -ATT-TCAC-TA-ATATATATATATGCTTATGCTTATACTTATACTTATACTTATAATTTATATA
65 CATTGCCACTTATATATATATATATACTTATACTTATACTTATACTTATACTTATAATTTATATA
* * * *
769088 ATATATTATATATATAATATTATGTAGTTTATATATTTTATATAGTTATACTTTAATCATTATAC
130 ATATATCATATATATAATATTATATAGTTTATATATTATATATAG-TATACTATAATCATTATAC
* *
769153 TATATATACACTTTATATTTATATAAATTGAGAAAGATGAGTATTAAATGGCTCCATCTTTTTAG
194 TATATATACACTTTATATTTATATAAATTGAAAAAGATGAGTATTAAATGGCTCCATCTTTATAG
* *
769218 GTGTCATGTCACCT
259 GTGACATCTCACCT
* *
769232 -ATCTTGGTGAACAAAATCAAATCAATTTGGACCCTTGATAGGGTTTGATCCAATGGTCATTATT
1 AATTTTGGTGAACAAAATCAAATCAATTTGGACCCTTGATAAGGTTTGATCCAATGG-CATTATT
*
769296 CATTGCCACTTATATATATATATATACTTATACTTTTTATA-TATATACTTTATACTTTATACTT
65 CATTGCCACTTATATATATATATATACTTATAC---TTATACT-TATAC-TTATAC-TTATAATT
769360 TATATACATATA-CACT-T-TAT-AT-TT-TATAGTTTATATA-TATATATA-TATA-TAT-AT-
124 TATATA-ATATATCA-TATATATAATATTATATAGTTTATATATTATATATAGTATACTATAATC
* *
769414 A-TATA-TATATATATACTTTATATTTATATAAATTGAAAAATATGAGTATTAAATGGCTCCATC
187 ATTATACTATATATACACTTTATATTTATATAAATTGAAAAAGATGAGTATTAAATGGCTCCATC
769477 TTTATAGGTGACATCTCA-CT
252 TTTATAGGTGACATCTCACCT
* * *
769497 AATTTTGGTGCATAAAATCAAATCAATTTAGACCCTTGATAAGGTTTGATCCAAATGGCAATTAT
1 AATTTTGGTGAACAAAATCAAATCAATTTGGACCCTTGATAAGGTTTGATCC-AATGGC-ATTAT
* *
769562 TCCTTGCCACTTATATATATATATATA--TATA-TATATACTTATACTT-TA--TATTA-TTATA
64 TCATTGCCACTTATATATATATATATACTTATACT-TATACTTATACTTATACTTATAATTTATA
*
769620 T-ATACT-TCATATTTAT-ATATTATATA
128 TAATA-TATCATATATATAATATTATATA
769646 TACACACTTT
Statistics
Matches: 361, Mismatches: 29, Indels: 60
0.80 0.06 0.13
Matches are distributed among these distances:
254 4 0.01
255 4 0.01
256 11 0.03
257 5 0.01
258 4 0.01
260 2 0.01
261 3 0.01
262 9 0.02
263 1 0.00
265 6 0.02
266 117 0.32
267 40 0.11
268 1 0.00
269 58 0.16
270 5 0.01
271 7 0.02
272 2 0.01
273 25 0.07
274 12 0.03
275 3 0.01
276 12 0.03
277 9 0.02
278 15 0.04
279 6 0.02
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (272 bp):
AATTTTGGTGAACAAAATCAAATCAATTTGGACCCTTGATAAGGTTTGATCCAATGGCATTATTC
ATTGCCACTTATATATATATATATACTTATACTTATACTTATACTTATACTTATAATTTATATAA
TATATCATATATATAATATTATATAGTTTATATATTATATATAGTATACTATAATCATTATACTA
TATATACACTTTATATTTATATAAATTGAAAAAGATGAGTATTAAATGGCTCCATCTTTATAGGT
GACATCTCACCT
Found at i:769580 original size:2 final size:2
Alignment explanation
Indices: 769573--769647 Score: 61
Period size: 2 Copynumber: 38.0 Consensus size: 2
769563 CCTTGCCACT
*
769573 TA TA TA TA TA TA TA TA TA TA TA TA TA CT- TA TA CTT TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA
*
769615 T- TA TA TA TA CT- TCA TA TT TA TA TA T- TA TA TA TA
1 TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA
769648 CACACTTTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
1 5 0.08
2 51 0.85
3 4 0.07
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:769619 original size:25 final size:25
Alignment explanation
Indices: 769576--769648 Score: 96
Period size: 25 Copynumber: 2.9 Consensus size: 25
769566 TGCCACTTAT
*
769576 ATATATATATATATATATATATACTT-
1 ATATTTATAT-TAT-TATATATACTTC
769602 ATACTTTATATTATTATATATACTTC
1 ATA-TTTATATTATTATATATACTTC
769628 ATATTTATA-TATTATATATAC
1 ATATTTATATTATTATATATAC
769649 ACACTTTATA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
24 12 0.27
25 17 0.39
26 9 0.20
27 6 0.14
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (25 bp):
ATATTTATATTATTATATATACTTC
Found at i:769674 original size:35 final size:35
Alignment explanation
Indices: 769620--769751 Score: 125
Period size: 33 Copynumber: 3.8 Consensus size: 35
769610 TATTATTATA
*
769620 TATACTTCATATTTATATAT-TATATATACACACTT
1 TATACTT-ATATTTCTATATATATATATACACACTT
*
769655 TATACTTATACTTTCTATATA-A-ATATATACAC-T
1 TATACTTATA-TTTCTATATATATATATACACACTT
*
769688 TATACTT-TATTACTCATATTATACATATATACACACTT
1 TATACTTATATT--TC-TA-TATATATATATACACACTT
*
769726 TATACTTATA--CCTATATATATATATA
1 TATACTTATATTTCTATATATATATATA
769752 AGTATATACA
Statistics
Matches: 82, Mismatches: 5, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
31 2 0.02
32 2 0.02
33 21 0.26
34 16 0.20
35 21 0.26
36 1 0.01
37 9 0.11
38 8 0.10
39 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (35 bp):
TATACTTATATTTCTATATATATATATACACACTT
Found at i:769681 original size:60 final size:60
Alignment explanation
Indices: 769572--769684 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
769562 TCCTTGCCAC
* * *
769572 TTATATATATATATATATATATATATACTTATACTTTATATTATTATATATACTTCATAT
1 TTATATATATATATATACACATATATACTTATACTTTATATTATAATATATACTTCATAT
* *
769632 TTATATAT-TATATATACACACTTTATACTTATACTTTCTA-TATAAATATATAC
1 TTATATATATATATATACACA-TATATACTTATACTTTATATTAT-AATATATAC
769685 ACTTATACTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 13 0.28
60 33 0.72
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (60 bp):
TTATATATATATATATACACATATATACTTATACTTTATATTATAATATATACTTCATAT
Found at i:774066 original size:45 final size:44
Alignment explanation
Indices: 774003--774102 Score: 164
Period size: 45 Copynumber: 2.2 Consensus size: 44
773993 ATATTAATAT
* * *
774003 TATATATAAATTGTATTATGCGTAATATGTGTATTTTGTGTGTA
1 TATATATATATTGTATTATGCGTAATATGTGTATTGTGTGTATA
774047 TATATATATATGTGTATTATGCGTAATATGTGTATTGTGTGTATA
1 TATATATATAT-TGTATTATGCGTAATATGTGTATTGTGTGTATA
774092 TATATATATAT
1 TATATATATAT
774103 ATGTGTGTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 10 0.19
45 42 0.81
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (44 bp):
TATATATATATTGTATTATGCGTAATATGTGTATTGTGTGTATA
Found at i:777475 original size:91 final size:91
Alignment explanation
Indices: 777240--777551 Score: 395
Period size: 91 Copynumber: 3.5 Consensus size: 91
777230 AAATTTGAAC
** *
777240 GAGTTCTTCTCATTATGAACTC-CC-TGCTGGAAATGTTGATGCAAGGTTGAACAAGTTCTTCTC
1 GAGTTCTTCTCATTATGAACTCTCCAT--TGGAAATGTTGAACCTAGGTTGAACAAGTTCTTCTC
* *
777303 ATTATGAACTTCTTCTTCCTCGTTGGAG
64 ATTATGAACTTCTTCTCCCTCGTTGGAT
* * * *
777331 GAG---TTCTCATTATGAACTCTCCAATGAAAATGTTG-AGCTAAGGTTGAACAAGTTCTTATCA
1 GAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTGAACCT-AGGTTGAACAAGTTCTTCTCA
*
777392 TTATGAACTTTTTCTCCCTCGTTGGAT
65 TTATGAACTTCTTCTCCCTCGTTGGAT
* *
777419 GAGTTCTTCTCATTATGAACTCTCCATTGGAAATCTTGAACCTAGGTTGAACAAGTTCTTCTTAT
1 GAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTGAACCTAGGTTGAACAAGTTCTTCTCAT
* *
777484 TATGAACTTCTTCTCCTTCATTGGAT
66 TATGAACTTCTTCTCCCTCGTTGGAT
* * *
777510 GAGTTATTCTCATTTTGAACTCTCCACTGGAAATGTT-AACCT
1 GAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTGAACCT
777552 GTTTATCTTC
Statistics
Matches: 193, Mismatches: 21, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
87 2 0.01
88 73 0.38
89 2 0.01
90 5 0.03
91 108 0.56
92 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (91 bp):
GAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTGAACCTAGGTTGAACAAGTTCTTCTCAT
TATGAACTTCTTCTCCCTCGTTGGAT
Found at i:778068 original size:21 final size:20
Alignment explanation
Indices: 778026--778068 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
778016 CATTTCAAGG
*
778026 AAAACTGTCTCAAGAGAGAC
1 AAAACTGTCTCAAGAGAAAC
* *
778046 AAAACTCGTTTCAAGGGAAAC
1 AAAACT-GTCTCAAGAGAAAC
778067 AA
1 AA
778069 TCTCAAAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.16
Consensus pattern (20 bp):
AAAACTGTCTCAAGAGAAAC
Found at i:778141 original size:103 final size:102
Alignment explanation
Indices: 778018--778390 Score: 317
Period size: 102 Copynumber: 3.6 Consensus size: 102
778008 AAGATCAGCA
* *
778018 TTTCAAG-GAAAACTGTCTCAAGAGAGACAAAACTCGTTTCAAGGGAAACAATCTCAAAGATTTT
1 TTTCAAGAG-AAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAG-TTTT
* *
778082 CTGTTTCAAGAGAAAAACTATCTCAAAGGAGAC-A-ATTTT
64 CTATTTCAAGAG--AAACTATCTCAAAGGAGACAACATTTG
* * * * *** *
778121 TTTCAAGAGAAACTGACTCAAGGGAGACATAATTTGTTTCAACGGAAATGTTCTCAAAGTTTTGT
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGTTTTCT
*
778186 ATTTCAAGAGAAACTATCTCAAGGGAGACAACATTTG
66 ATTTCAAGAGAAACTATCTCAAAGGAGACAACATTTG
* **
778223 TTTCAA-AGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTGTCTCAAGAGAGAC
1 TTTCAAGA-GAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTC-A-A-AG--
* * * * *
778287 ATAATT-TATTTCAAGGGAAACTGTCTC-AAGAGAGACAAAATTTT
60 -T-TTTCTATTTCAAGAGAAACTATCTCAAAG-GAGACAACATTTG
* * * * * *
778331 TTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAA
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAA--TT-TGTTTCAAGGGAAACAATCTCAA
778391 GTGAGATAAA
Statistics
Matches: 220, Mismatches: 34, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
100 18 0.08
101 2 0.01
102 63 0.29
103 49 0.22
104 2 0.01
105 2 0.01
107 2 0.01
108 58 0.26
109 3 0.01
110 3 0.01
111 18 0.08
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (102 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGTTTTCT
ATTTCAAGAGAAACTATCTCAAAGGAGACAACATTTG
Found at i:778155 original size:36 final size:36
Alignment explanation
Indices: 778115--778357 Score: 172
Period size: 36 Copynumber: 6.9 Consensus size: 36
778105 CAAAGGAGAC
*
778115 AATTTTTTTCAAGAGAAACTGACTCAAGGGAGACAT
1 AATTTTTTTCAAGAGAAACTGACTCAAGAGAGACAT
* *
778151 AATTTGTTTCAACG-GAAA-TGTTCTC-A-A-AG---T
1 AATTTTTTTCAA-GAGAAACTG-ACTCAAGAGAGACAT
*
778181 --TTTGTATTTCAAGAGAAACT-ATCTCAAGGGAGACA-
1 AATTT-T-TTTCAAGAGAAACTGA-CTCAAGAGAGACAT
* * *
778216 ACATTTGTTTCAA-AGGAAACTGTCTCAAGAGAGACAA
1 A-ATTTTTTTCAAGA-GAAACTGACTCAAGAGAGACAT
* * *
778253 AATTTATTTCAAGGGAAACTGTCTCAAGAGAGACAT
1 AATTTTTTTCAAGAGAAACTGACTCAAGAGAGACAT
* * * *
778289 AATTTATTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 AATTTTTTTCAAGAGAAACTGACTCAAGAGAGACAT
* *
778325 AATTTTTTTCAAGGGAAACT-ATCTCAAGCGAGA
1 AATTTTTTTCAAGAGAAACTGA-CTCAAGAGAGA
778358 TAAAATCTTC
Statistics
Matches: 170, Mismatches: 16, Indels: 42
0.75 0.07 0.18
Matches are distributed among these distances:
28 3 0.02
29 1 0.01
30 14 0.08
31 2 0.01
33 4 0.02
35 4 0.02
36 137 0.81
37 2 0.01
38 3 0.02
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.28
Consensus pattern (36 bp):
AATTTTTTTCAAGAGAAACTGACTCAAGAGAGACAT
Found at i:778286 original size:72 final size:71
Alignment explanation
Indices: 778018--778591 Score: 327
Period size: 78 Copynumber: 7.9 Consensus size: 71
778008 AAGATCAGCA
* * ** *
778018 TTTCAAGGAAAACTGTCTCAAGAGAGACAAAACTCGTTTCAAGGGAAACAATCTC-A-A-AG--A
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTATCTCAAGAGAGACA
**
778078 TTTTCTG
66 AATT-TG
* * * * *
778085 TTTCAAGAGAAAAACTATCTCAA-AGGAGAC--AATTTTTTTCAAGAGAAACTGA-CTCAAGGGA
1 TTTCAAG-G-GAAACTGTCTCAAGA-GAGACAAAATTTATTTCAAGGGAAACT-ATCTCAAGAGA
778146 GACATAATTTG
62 GACA-AATTTG
* ** * *
778157 TTTCAACGGAAA-TGTTCTC-A-A-AG----TTTTGTATTTCAAGAGAAACTATCTCAAGGGAGA
1 TTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATT-TATTTCAAGGGAAACTATCTCAAGAGAGA
778214 CAACATTTG
64 CAA-ATTTG
* *
778223 TTTCAAAGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTGTCTCAAGAGAGACA
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTATCTCAAGAGAGACA
*
778288 TAATTTA
66 -AATTTG
* * *
778295 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTTTTTCAAGGGAAACTATCTCAAGCGAGATA
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTATCTCAAGAGAGA-C
778360 AAATCTTCTG
65 AAA--TT-TG
* * * * * * *
778370 TTTCGAGGGAAACTATCTCAAGTGAGATAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGTGAG
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAA---TTTATTTCAAGGGAAACTATCTCAAGAGAG
778435 ACAAAATCTTCTG
63 AC-AAA--TT-TG
* * * * * * * *
778448 TTTCGAGGGAAACTATCTCAGGCGAGACCAAATCTTCTATTTCGAGAGAAACTATCTCAAGCGAG
1 TTTCAAGGGAAACTGTCTCAAGAGAGA-CAAA-ATT-TATTTCAAGGGAAACTATCTCAAGAGAG
*
778513 ATAAAATCTTTTG
63 A-CAAA---TTTG
* * * * * * * *
778526 TTTCGAGAGAAACTATCTCAAGTGAGATAAAATCTTCTATTTCGAGTGAAACTATCTCAAGCGAG
1 TTTCAAGGGAAACTGTCTCAAGAGAGACAAAA--TT-TATTTCAAGGGAAACTATCTCAAGAGAG
778591 A
63 A
778592 TACAATCTTC
Statistics
Matches: 417, Mismatches: 52, Indels: 65
0.78 0.10 0.12
Matches are distributed among these distances:
65 4 0.01
66 48 0.12
67 30 0.07
68 5 0.01
69 22 0.05
70 9 0.02
71 1 0.00
72 102 0.24
73 6 0.01
74 2 0.00
75 29 0.07
77 5 0.01
78 149 0.36
79 5 0.01
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (71 bp):
TTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTATCTCAAGAGAGACA
AATTTG
Found at i:778386 original size:39 final size:39
Alignment explanation
Indices: 778195--778602 Score: 426
Period size: 39 Copynumber: 10.8 Consensus size: 39
778185 TATTTCAAGA
* * * *
778195 GAAACTATCTCAAGGGAGACAACA--TT-TGTTTCAAAG
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
* * * *
778231 GAAACTGTCTCAAGAGAGACAAAA--TT-TATTTCAAGG
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
* * * * *
778267 GAAACTGTCTCAAGAGAGACATAA--TT-TATTTCAAGG
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
* * *
778303 GAAACTGTCTCAAGAGAGACAAAAT-TT-T-TTTCAAGG
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
*
778339 GAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
* * *
778378 GAAACTATCTCAAGTGAGATAAAATCTTTTGTTTCGAGG
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
*
778417 GAAACTATCTCAAGTGAGACAAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
* * * *
778456 GAAACTATCTCAGGCGAGACCAAATCTTCTATTTCGAGA
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
* * *
778495 GAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGAGA
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
* * * *
778534 GAAACTATCTCAAGTGAGATAAAATCTTCTATTTCGAGT
1 GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
* *
778573 GAAACTATCTCAAGCGAGATACAATCTTCT
1 GAAACTATCTCAAGCGAGACAAAATCTTCT
778603 TTAAAAACAA
Statistics
Matches: 337, Mismatches: 31, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
36 119 0.35
37 5 0.01
38 1 0.00
39 212 0.63
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (39 bp):
GAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGG
Found at i:778441 original size:78 final size:78
Alignment explanation
Indices: 778185--778789 Score: 466
Period size: 78 Copynumber: 8.0 Consensus size: 78
778175 CAAAGTTTTG
* * * * * *
778185 TATTTCAAGAGAAACTATCTCAAGGGAGACAACA--TT-TGTTTCAAAGGAAACTGTCTCAAGAG
1 TATTTCGAGAGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGTG
778247 AGACAAAA---TT
66 AGACAAAATCTTT
* * * * * * * *
778257 TATTTCAAGGGAAACTGTCTCAAGAGAGACATAA--TT-TATTTCAAGGGAAACTGTCTCAAGAG
1 TATTTCGAGAGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGTG
778319 AGACAAAA--TTT
66 AGACAAAATCTTT
* * * *
778330 T-TTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGTG
1 TATTTCGAGAGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGTG
*
778394 AGATAAAATCTTT
66 AGACAAAATCTTT
* * * * * *
778407 TGTTTCGAGGGAAACTATCTCAAGTGAGACAAAATCTTCTGTTTCGAGGGAAACTATCTCAGGCG
1 TATTTCGAGAGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGTG
* *
778472 AGACCAAATCTTC
66 AGACAAAATCTTT
* * * *
778485 TATTTCGAGAGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGAGAGAAACTATCTCAAGTG
1 TATTTCGAGAGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGTG
* *
778550 AGATAAAATCTTC
66 AGACAAAATCTTT
* * * * **
778563 TATTTCGAGTGAAACTATCTCAAGCGAGATACAATCTTC--TTT-AA---AAACAATCTTGAGTG
1 TATTTCGAGAGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGTG
* * *
778622 AAATAAAATATTT
66 AGACAAAATCTTT
* * * * * * * * **
778635 TCTTTCGAGTAAAAAATCGTCTCAAGCGAAAC-AAATC-T-TGTTTTAA-GAAAAATAATCTTGA
1 TATTTCGAG-AGAAACT-ATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACT-ATCTCAA
*
778696 GTGA-A-ATGAATCTTCT
63 GTGAGACA-AAATCTT-T
* * * **
778712 TGTTTCGAGTAAAAACTATCTCAAGAGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAAC
1 TATTTCGAG-AGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGT
778777 GAGACAAAATCTT
65 GAGACAAAATCTT
778790 CTGTTTCAAG
Statistics
Matches: 441, Mismatches: 69, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
72 122 0.28
73 14 0.03
74 15 0.03
75 31 0.07
76 23 0.05
77 36 0.08
78 173 0.39
79 14 0.03
80 12 0.03
81 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (78 bp):
TATTTCGAGAGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGTG
AGACAAAATCTTT
Found at i:778748 original size:77 final size:76
Alignment explanation
Indices: 778477--778750 Score: 240
Period size: 77 Copynumber: 3.6 Consensus size: 76
778467 AGGCGAGACC
* * * *
778477 AAATCTTCTATTTCGAG-AGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGAGAGAAACT-
1 AAATCTTCTATTTCGAGTAAAAACTATCTCAAGCGAGACAAAATC--TTGTTT-TAGA-AAAATA
** *
778540 ATCTCAAGTGAGATA
62 ATCTTGAGTGAAATA
* * * * *
778555 AAATCTTCTATTTCGAGT-GAAACTATCTCAAGCGAGATACAATCTT-CTTT--AAAAACAATCT
1 AAATCTTCTATTTCGAGTAAAAACTATCTCAAGCGAGACAAAATCTTGTTTTAGAAAAATAATCT
778616 TGAGTGAAATA
66 TGAGTGAAATA
* * * * * *
778627 AAATATTTTCTTTCGAGTAAAAAATCGTCTCAAGCGAAAC-AAATCTTGTTTTAAGAAAAATAAT
1 AAATCTTCTATTTCGAGTAAAAACT-ATCTCAAGCGAGACAAAATCTTGTTTT-AGAAAAATAAT
778691 CTTGAGTGAAAT-
64 CTTGAGTGAAATA
* * *
778703 GAATCTTCTTGTTTCGAGTAAAAACTATCTCAAGAGAGACAAAATCTT
1 AAATCTTC-TATTTCGAGTAAAAACTATCTCAAGCGAGACAAAATCTT
778751 CTGTTTCAAG
Statistics
Matches: 159, Mismatches: 27, Indels: 21
0.77 0.13 0.10
Matches are distributed among these distances:
71 3 0.02
72 28 0.18
73 10 0.06
74 14 0.09
75 2 0.01
76 18 0.11
77 42 0.26
78 42 0.26
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (76 bp):
AAATCTTCTATTTCGAGTAAAAACTATCTCAAGCGAGACAAAATCTTGTTTTAGAAAAATAATCT
TGAGTGAAATA
Found at i:778752 original size:41 final size:39
Alignment explanation
Indices: 778704--778805 Score: 134
Period size: 39 Copynumber: 2.6 Consensus size: 39
778694 GAGTGAAATG
*
778704 AATCTTCTTGTTTCGAGTAAAAACTATCTCAAGA-GAGACAA
1 AATCTTC-TGTTTCAAG-AAAAACTATCTCAA-ACGAGACAA
**
778745 AATCTTCTGTTTCAAGGGAAACTATCTCAAACGAGACAA
1 AATCTTCTGTTTCAAGAAAAACTATCTCAAACGAGACAA
*
778784 AATCTTCTGTTTCAAGCAAAAC
1 AATCTTCTGTTTCAAGAAAAAC
778806 AACTATTGTT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
38 1 0.02
39 39 0.71
40 8 0.15
41 7 0.13
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (39 bp):
AATCTTCTGTTTCAAGAAAAACTATCTCAAACGAGACAA
Found at i:778770 original size:39 final size:39
Alignment explanation
Indices: 778724--778799 Score: 136
Period size: 39 Copynumber: 1.9 Consensus size: 39
778714 TTTCGAGTAA
778724 AAACTATCTCAAGA-GAGACAAAATCTTCTGTTTCAAGGG
1 AAACTATCTCAA-ACGAGACAAAATCTTCTGTTTCAAGGG
778763 AAACTATCTCAAACGAGACAAAATCTTCTGTTTCAAG
1 AAACTATCTCAAACGAGACAAAATCTTCTGTTTCAAG
778800 CAAAACAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 1 0.03
39 35 0.97
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.26
Consensus pattern (39 bp):
AAACTATCTCAAACGAGACAAAATCTTCTGTTTCAAGGG
Found at i:783505 original size:18 final size:17
Alignment explanation
Indices: 783470--783512 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
783460 CAAGGATTAA
783470 ATTAAAAGAATAAAAAT
1 ATTAAAAGAATAAAAAT
*
783487 ATTAAAAGTAATTAAAAT
1 ATTAAAAG-AATAAAAAT
783505 ATATAAAA
1 AT-TAAAA
783513 TGACTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.35
18 10 0.43
19 5 0.22
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (17 bp):
ATTAAAAGAATAAAAAT
Found at i:787288 original size:3 final size:3
Alignment explanation
Indices: 787280--787345 Score: 82
Period size: 3 Copynumber: 22.7 Consensus size: 3
787270 GTAATATTTG
** **
787280 TAA TAA TAA TAA TAA TAA TAA TAA T-A TGT TAA TAA TAA TTG TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
787326 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
787346 TATTCTCGGA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
2 4 0.07
3 50 0.93
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:787314 original size:20 final size:20
Alignment explanation
Indices: 787280--787347 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
787270 GTAATATTTG
787280 TAATAATAATAATAATAATAA
1 TAAT-ATAATAATAATAATAA
** **
787301 TAATATGTTAATAATAATTG
1 TAATATAATAATAATAATAA
787321 TAATATAATAATAATAATAA
1 TAATATAATAATAATAATAA
787341 TAATATA
1 TAATATA
787348 TTCTCGGATG
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
20 35 0.90
21 4 0.10
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
TAATATAATAATAATAATAA
Found at i:787328 original size:11 final size:14
Alignment explanation
Indices: 787280--787346 Score: 59
Period size: 14 Copynumber: 4.9 Consensus size: 14
787270 GTAATATTTG
**
787280 TAATAATAATAATAA
1 TAATAATAAT-ATGT
787295 TAATAATAATATGT
1 TAATAATAATATGT
787309 TAATAATAAT-TG-
1 TAATAATAATATGT
**
787321 TAAT-ATAATAATAA
1 TAATAATAAT-ATGT
787335 TAATAATAATAT
1 TAATAATAATAT
787347 ATTCTCGGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
11 5 0.11
12 4 0.09
13 3 0.07
14 18 0.40
15 15 0.33
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (14 bp):
TAATAATAATATGT
Found at i:787513 original size:20 final size:20
Alignment explanation
Indices: 787485--787533 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
787475 ATCCTACCTT
* *
787485 GAGGTTTTATAGATGACCCG
1 GAGGTTTTACAAATGACCCG
* *
787505 GAGGATTTACAAATTACCCG
1 GAGGTTTTACAAATGACCCG
787525 GAGGTTTTA
1 GAGGTTTTA
787534 ATTTTCTTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (20 bp):
GAGGTTTTACAAATGACCCG
Found at i:787646 original size:20 final size:20
Alignment explanation
Indices: 787604--787652 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
787594 ATCCTACCCT
*
787604 GAGGTTTTACAGATGACCAG
1 GAGGTTTTACAAATGACCAG
* * *
787624 GAGGATTTACAAATTACCTG
1 GAGGTTTTACAAATGACCAG
787644 GAGGTTTTA
1 GAGGTTTTA
787653 ATTTTCTAGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (20 bp):
GAGGTTTTACAAATGACCAG
Found at i:787681 original size:119 final size:119
Alignment explanation
Indices: 787470--787873 Score: 666
Period size: 119 Copynumber: 3.4 Consensus size: 119
787460 GGAAAATGTA
* * *
787470 AAAACATCCTACCTTGAGGTTTTATAGATGACCCGGAGGATTTACAAATTACCCGGAGGTTTTAA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGATTTACAAATTACCTGGAGGTTTTAA
* *
787535 TTTTCTTGAACATTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCATACG
66 TTTTCTAGAACATTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCATGCG
*
787589 AAAACATCCTACCCTGAGGTTTTACAGATGACCAGGAGGATTTACAAATTACCTGGAGGTTTTAA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGATTTACAAATTACCTGGAGGTTTTAA
787654 TTTTCTAGAACATTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCATGCG
66 TTTTCTAGAACATTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCATGCG
* *
787708 AAAACATCCTACCCTAAGGTTTTACAGATGACCCGAAGGATTTACAAATTACCCT-GAGGTTTTA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGATTTACAAATTA-CCTGGAGGTTTTA
* * * ** *
787772 ATTTTCTAGAACATTAAATGAGAACCTTTGTTTATTACTTTCTTATTTTCATGCG
65 ATTTTCTAGAACATTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCATGCG
787827 AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGATTTACAA
1 AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGATTTACAA
787874 TTTTGTGGGA
Statistics
Matches: 267, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
119 264 0.99
120 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (119 bp):
AAAACATCCTACCCTGAGGTTTTACAGATGACCCGGAGGATTTACAAATTACCTGGAGGTTTTAA
TTTTCTAGAACATTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCATGCG
Found at i:787746 original size:20 final size:20
Alignment explanation
Indices: 787718--787771 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
787708 AAAACATCCT
* *
787718 ACCCTAAGGTTTTACAGATG
1 ACCCGAAGGTTTTACAAATG
* *
787738 ACCCGAAGGATTTACAAATT
1 ACCCGAAGGTTTTACAAATG
787758 ACCCTG-AGGTTTTA
1 ACCC-GAAGGTTTTA
787772 ATTTTCTAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (20 bp):
ACCCGAAGGTTTTACAAATG
Found at i:790955 original size:9 final size:9
Alignment explanation
Indices: 790943--791012 Score: 79
Period size: 9 Copynumber: 7.7 Consensus size: 9
790933 TTTTTTCATA
790943 TTTTTT-TT
1 TTTTTTCTT
* *
790951 CTTTTTCTC
1 TTTTTTCTT
790960 TTTTTTCTT
1 TTTTTTCTT
790969 TTTTTTCTT
1 TTTTTTCTT
790978 TTCCTTTTCTT
1 TT--TTTTCTT
*
790989 TTTTTCCTT
1 TTTTTTCTT
*
790998 TTTTTCCTT
1 TTTTTTCTT
791007 TTTTTT
1 TTTTTT
791013 TCTAATGGAT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
8 5 0.09
9 39 0.74
11 9 0.17
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:790970 original size:20 final size:20
Alignment explanation
Indices: 790923--790974 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 20
790913 CTTGATTAAA
*
790923 TTTCTTTTCCTTTTTTCATAT
1 TTTCTTTT-CTTTTTTCATTT
790944 TTT-TTTTCTTTTTCTC-TTT
1 TTTCTTTTCTTTTT-TCATTT
790963 TTTCTTTT-TTTT
1 TTTCTTTTCTTTT
790975 CTTTTCCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 15 0.54
20 10 0.36
21 3 0.11
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTCTTTTCTTTTTTCATTT
Found at i:790999 original size:6 final size:5
Alignment explanation
Indices: 790943--791015 Score: 57
Period size: 5 Copynumber: 15.2 Consensus size: 5
790933 TTTTTTCATA
*
790943 TTTT- TTTTC TTTTTC TCTT- TTTTC TTTT- TTTTC TTTTCC TTTTC TTTT-
1 TTTTC TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC TTTT-C TTTTC TTTTC
* * *
790991 TTTCC TTTT- TTTCC TTTTT TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC T
791016 AATGGATGAG
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
4 17 0.31
5 27 0.50
6 10 0.19
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:791007 original size:18 final size:18
Alignment explanation
Indices: 790927--791011 Score: 68
Period size: 18 Copynumber: 4.7 Consensus size: 18
790917 ATTAAATTTC
* *
790927 TTTTCCTTTTTTCATATT
1 TTTTCTTTTTTTCCTATT
*
790945 TTTT-TTCTTTTT-CTCTT
1 TTTTCTT-TTTTTCCTATT
* *
790962 TTTTCTTTTTTTTCTTTT
1 TTTTCTTTTTTTCCTATT
790980 CCTTTTCTTTTTTTCCT-TT
1 --TTTTCTTTTTTTCCTATT
790999 TTTTCCTTTTTTT
1 TTTT-CTTTTTTT
791012 TTCTAATGGA
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
17 17 0.30
18 23 0.41
19 2 0.04
20 14 0.25
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTCTTTTTTTCCTATT
Found at i:791013 original size:23 final size:21
Alignment explanation
Indices: 790944--791013 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 21
790934 TTTTTCATAT
*
790944 TTTTTTTCTTTTT-CTCTTTTT
1 TTTTTTTTTTTTTCCT-TTTTT
790965 TCTTTTTTTTCTTTTCCTTTTCTT
1 T-TTTTTTTT-TTTTCCTTTT-TT
*
790989 TTTTTCCTTTTTTTCCTTTTTT
1 TTTTT-TTTTTTTTCCTTTTTT
791011 TTT
1 TTT
791014 CTAATGGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
21 1 0.02
22 12 0.29
23 21 0.50
24 8 0.19
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTTTTTTTTCCTTTTTT
Found at i:799843 original size:19 final size:19
Alignment explanation
Indices: 799819--799874 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
799809 AAGTTTATTC
799819 TTGGTTTCTT-CTCTCTCTT
1 TTGGTTTCTTGCTC-CTCTT
* *
799838 TTGGTTTGTTGCTCCTTTT
1 TTGGTTTCTTGCTCCTCTT
799857 TTGGTTTCTTGCTCCTCT
1 TTGGTTTCTTGCTCCTCT
799875 GTCCTCCGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 29 0.91
20 3 0.09
ACGTcount: A:0.00, C:0.23, G:0.16, T:0.61
Consensus pattern (19 bp):
TTGGTTTCTTGCTCCTCTT
Done.