genome.fa.s7913.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007913.1 Hibiscus syriacus cultivar Beakdansim tig00110315_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  425440

Tables:   1   2   

This is table  1  of  2  ( 121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3038--3067	13	2.4	13	94	5	53	43	0	30	26	1.55
7870--7916	24	2.0	24	91	0	76	21	23	40	14	1.90
15920--15979	25	2.4	25	82	0	66	30	28	30	11	1.92
16033--16073	15	2.7	15	88	0	55	31	39	26	2	1.70
22452--22491	16	2.5	16	95	0	71	37	30	12	20	1.89
27285--27360	24	3.2	24	86	3	109	23	19	19	36	1.95
40672--40726	20	2.7	21	83	11	78	18	1	30	49	1.58
40670--40728	27	2.1	28	81	3	66	18	1	33	45	1.60
45492--45538	20	2.3	20	89	7	69	23	27	38	10	1.88
45492--45534	15	2.9	15	82	0	50	23	30	37	9	1.86
48591--48620	2	15.0	2	100	0	60	50	0	0	50	1.00
58772--58823	24	2.2	24	82	0	59	50	17	11	21	1.77
58792--58909	24	4.9	24	88	6	159	40	19	17	22	1.91
58795--58926	48	2.7	47	80	11	151	42	18	16	21	1.89
61223--61256	15	2.3	15	100	0	68	23	26	35	14	1.94
61222--61253	7	4.4	7	92	7	55	25	28	34	12	1.92
61251--61296	18	2.6	18	92	0	74	10	17	52	19	1.74
63451--63502	24	2.2	24	82	0	59	50	17	11	21	1.77
63471--63588	24	4.9	24	88	6	159	40	19	17	22	1.91
63474--63605	48	2.7	47	80	11	151	42	18	16	21	1.89
66034--66079	7	6.4	7	95	5	83	26	28	32	13	1.93
66035--66095	15	4.3	15	91	6	92	22	26	36	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66035--66095	29	2.1	28	88	8	88	22	26	36	14	1.93
66090--66135	18	2.6	18	92	0	74	10	17	52	19	1.74
66056--66113	13	4.3	13	86	4	71	18	20	43	17	1.89
123566--123607	20	2.2	19	95	4	75	57	23	0	19	1.41
125080--125199	29	4.1	29	87	5	163	32	5	20	41	1.76
127914--128004	24	3.8	24	82	2	103	38	18	15	27	1.91
127914--128004	47	1.9	48	81	2	112	38	18	15	27	1.91
132401--132473	35	2.1	35	82	5	85	32	27	30	9	1.89
132550--132640	24	3.8	24	85	2	121	39	19	13	27	1.89
134300--134357	27	2.0	29	80	9	66	31	17	13	37	1.89
135113--135137	13	1.9	13	100	0	50	20	24	40	16	1.91
135118--135199	18	4.6	18	85	0	101	12	15	48	23	1.79
135120--135200	36	2.2	36	88	0	117	12	14	48	24	1.79
137246--137329	24	3.5	24	78	3	107	36	20	14	28	1.91
137236--137329	47	2.0	48	87	6	138	37	20	12	29	1.90
139568--139635	23	2.9	23	88	4	91	39	19	14	26	1.90
148989--149034	23	2.0	24	86	4	67	28	4	6	60	1.40
163192--163235	9	5.0	9	80	5	54	0	4	9	86	0.70
163193--163231	8	4.9	8	84	9	53	0	5	7	87	0.68
163173--163234	31	2.1	28	85	8	79	1	4	11	82	0.89
163190--163227	20	1.9	20	89	10	60	0	7	7	84	0.79
167592--167664	35	2.1	35	89	0	110	34	27	26	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167746--167832	24	3.7	23	80	4	93	37	17	17	27	1.92
170056--170153	24	4.1	24	81	7	65	43	18	11	26	1.83
170073--170160	24	3.7	24	84	6	115	40	18	12	28	1.87
172594--172651	8	6.9	8	78	11	55	29	25	31	13	1.94
174693--174768	24	3.2	24	84	3	73	46	19	13	21	1.84
174710--174824	24	4.8	24	82	6	144	40	18	15	25	1.90
177177--177206	13	2.3	13	94	0	51	16	10	50	23	1.75
177220--177263	21	2.1	21	91	8	72	43	31	11	13	1.80
178983--179032	8	6.5	8	78	21	54	22	26	36	16	1.94
179008--179037	13	2.3	13	94	0	51	16	23	43	16	1.87
181020--181092	35	2.1	35	89	0	110	34	28	27	9	1.88
181174--181253	24	3.4	23	78	11	90	38	17	15	28	1.90
208139--208226	24	3.7	24	78	0	86	46	15	11	26	1.80
212821--212877	12	4.8	12	74	8	53	50	15	14	19	1.77
212821--212876	24	2.3	24	84	0	67	51	16	14	17	1.76
217538--217603	24	2.8	24	79	4	71	53	15	12	19	1.73
223620--223672	24	2.2	24	83	3	63	11	15	15	58	1.63
223692--223716	11	2.3	11	100	0	50	16	36	8	40	1.77
224604--224660	24	2.4	24	90	0	96	19	10	36	33	1.86
227505--227530	6	4.3	6	100	0	52	50	0	34	15	1.45
231412--231466	24	2.3	24	75	9	60	67	10	14	7	1.41
232685--232727	23	1.9	21	81	13	50	32	18	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236287--236351	16	4.1	16	73	11	53	63	0	21	15	1.31
236551--236592	14	3.1	14	82	3	50	0	11	7	80	0.88
236825--236850	10	2.6	10	100	0	52	50	0	30	19	1.48
255421--255534	49	2.3	48	90	3	174	14	28	23	33	1.94
259664--259717	23	2.3	24	87	3	83	62	12	14	9	1.53
263783--263844	23	2.5	24	82	7	81	61	12	16	9	1.56
268087--268132	24	2.0	23	86	4	65	63	15	13	8	1.52
268116--268150	14	2.6	14	90	4	54	82	0	17	0	0.66
272664--272718	24	2.2	24	80	6	65	67	14	12	5	1.40
275451--275480	13	2.4	13	94	5	53	43	0	30	26	1.55
281518--281555	19	2.1	18	90	9	60	13	13	5	68	1.37
281514--281561	20	2.4	21	86	10	73	10	14	4	70	1.29
287134--287176	23	1.9	23	85	4	61	60	13	13	11	1.59
289905--289934	13	2.4	13	94	5	53	43	0	30	26	1.55
296354--296441	24	3.7	24	82	0	95	28	14	18	38	1.90
303529--303569	6	7.0	6	78	15	50	82	0	17	0	0.66
303529--303569	17	2.4	17	91	4	64	82	0	17	0	0.66
303601--303653	25	2.0	28	85	14	76	64	7	18	9	1.47
305668--305719	19	2.6	21	90	6	81	46	5	13	34	1.67
306617--306676	30	2.0	31	83	3	77	51	10	10	28	1.67
309041--309102	31	2.0	31	81	9	74	4	14	4	75	1.13
309056--309131	17	4.6	17	67	20	54	2	14	5	77	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309071--309122	27	1.9	27	88	0	77	1	17	3	76	1.02
309396--309435	19	2.0	20	90	4	64	65	0	15	20	1.28
310685--310744	30	2.0	31	83	3	77	51	10	10	28	1.67
316398--316446	18	2.5	20	81	18	68	34	16	10	38	1.82
316843--316882	19	2.0	20	90	4	64	20	15	0	65	1.28
329232--329300	33	2.1	33	83	5	86	31	1	36	30	1.67
334908--334976	33	2.1	33	83	5	86	31	1	36	30	1.67
342813--342857	14	3.2	14	90	0	72	37	0	40	22	1.54
344889--344919	14	2.2	14	94	0	53	32	12	16	38	1.86
345810--345846	14	2.7	14	91	4	58	32	0	43	24	1.55
346719--346762	19	2.3	20	88	7	65	65	0	11	22	1.24
350943--351022	18	4.6	17	70	27	62	3	17	5	73	1.16
350957--351015	13	4.7	12	78	15	57	1	18	3	76	1.02
350959--351015	19	2.9	19	71	23	55	1	19	3	75	1.04
351278--351319	12	3.2	13	83	6	50	64	0	9	26	1.24
351287--351326	19	2.0	20	90	4	64	65	0	12	22	1.26
354993--355019	14	1.9	14	100	0	54	44	14	0	40	1.46
356609--356842	29	8.2	29	88	2	294	44	12	2	40	1.55
372910--372953	19	2.3	19	80	4	52	79	2	15	2	0.93
378959--379015	29	2.0	29	92	0	96	45	5	26	22	1.73
379165--379211	23	2.1	22	84	7	60	12	19	12	55	1.69
379170--379213	22	2.0	23	95	4	81	13	15	13	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381764--381800	5	7.6	5	82	17	51	62	0	21	16	1.33
384273--384315	23	1.9	23	90	4	70	44	11	30	13	1.80
388699--388778	35	2.2	37	91	4	128	27	3	37	31	1.74
389117--389167	19	2.6	20	87	3	68	45	5	15	33	1.71
392761--392840	35	2.2	37	91	4	128	27	3	37	31	1.74
393179--393229	19	2.6	20	87	3	68	45	5	15	33	1.71
396096--396151	23	2.3	25	81	9	80	62	12	16	8	1.53
409348--409416	33	2.1	33	83	5	86	30	36	1	31	1.67
411433--411536	33	3.1	33	82	9	95	30	36	1	30	1.69
416742--416785	12	3.6	11	82	17	52	75	4	20	0	0.98

Tables:   1   2