Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007913.1 Hibiscus syriacus cultivar Beakdansim tig00110315_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 425440
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33


File 2 of 2

Found at i:416841 original size:14 final size:15

Alignment explanation


    Indices: 416807--416853  Score: 51
    Period size: 14  Copynumber: 3.1  Consensus size: 15

     416797 AATTTGGAGT

                           
     416807 GCAAAAGAAAGAAAA
          1 GCAAAAGAAAGAAAA

             *             
     416822 GAAAAAG-AAGAAAA
          1 GCAAAAGAAAGAAAA

            *                
     416836 TCAAAAGCAAAAGAAAA
          1 GCAAAAG--AAAGAAAA

             
     416853 G
          1 G

     416854 TGAAGCAAGT


Statistics
Matches: 25,  Mismatches: 4, Indels: 4
        0.76            0.12        0.12

Matches are distributed among these distances:
  14   12  0.48
  15    6  0.24
  17    7  0.28

ACGTcount: A:0.72, C:0.06, G:0.19, T:0.02


Consensus pattern (15 bp):   
GCAAAAGAAAGAAAA

Done.