Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007915.1 Hibiscus syriacus cultivar Beakdansim tig00110318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1667290
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 10
Found at i:617985 original size:37 final size:37
Alignment explanation
Indices: 617925--618021 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
617915 TTGATTATTT
* *
617925 ATTCTTC-TTCCTTTCTTCATTCTTCTTTTCTTTCTTC
1 ATTCTTCTTTTCTTTCTTC-TTCTTCATTTCTTTCTTC
*
617962 ATTCTTCTTTTCTTTCTTCTTCTTCATTTCTTTTTTC
1 ATTCTTCTTTTCTTTCTTCTTCTTCATTTCTTTCTTC
* * *
617999 CTTCTCCTATT-TTTCTTTCTTCT
1 ATTCTTCTTTTCTTTC-TTCTTCT
618022 CCCGGTGCCC
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
36 4 0.08
37 38 0.73
38 10 0.19
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (37 bp):
ATTCTTCTTTTCTTTCTTCTTCTTCATTTCTTTCTTC
Found at i:618023 original size:18 final size:19
Alignment explanation
Indices: 617935--618020 Score: 61
Period size: 19 Copynumber: 4.4 Consensus size: 19
617925 ATTCTTCTTC
*
617935 CTTTCTTCATTCT-TCTTTT
1 CTTTCTTCATCCTAT-TTTT
*
617954 CTTTCTTCATTCT-TCTTTT
1 CTTTCTTCATCCTAT-TTTT
* *
617973 CTTTCTTCTTCTTCATTTCTT
1 CTTTCTTCATCCT-ATTT-TT
*
617994 TTTTCCTTC-TCCTATTTTT
1 CTTT-CTTCATCCTATTTTT
618013 CTTTCTTC
1 CTTTCTTC
618021 TCCCGGTGCC
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
18 4 0.07
19 34 0.60
20 6 0.11
21 9 0.16
22 4 0.07
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (19 bp):
CTTTCTTCATCCTATTTTT
Found at i:618425 original size:40 final size:40
Alignment explanation
Indices: 618294--618432 Score: 167
Period size: 39 Copynumber: 3.5 Consensus size: 40
618284 TCACGGGGGG
*
618294 GACGCATGGAGTGCAATGCGTC-T-AGGGGGAAAGGGGAAA
1 GACGCATGGAGTGCAATGCGTCTTCGGGGGGAAA-GGGAAA
* * * **
618333 GACACATGGAGTGCAATGCATCTTCGGGGTG-TTGGGAAA
1 GACGCATGGAGTGCAATGCGTCTTCGGGGGGAAAGGGAAA
* * *
618372 GACGCATGAAGTGCTATGCGTCTTCGGGGGGAAAGGGAGA
1 GACGCATGGAGTGCAATGCGTCTTCGGGGGGAAAGGGAAA
618412 GACGCATGGAGTGCAATGCGT
1 GACGCATGGAGTGCAATGCGT
618433 ATTTCGTGTG
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 52 0.64
40 25 0.31
41 4 0.05
ACGTcount: A:0.27, C:0.15, G:0.40, T:0.18
Consensus pattern (40 bp):
GACGCATGGAGTGCAATGCGTCTTCGGGGGGAAAGGGAAA
Found at i:618609 original size:17 final size:17
Alignment explanation
Indices: 618560--618625 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
618550 ATAAACCTAT
**
618560 AAAATTTTATAAGGATAA
1 AAAATTTTA-AAATATAA
**
618578 AATAATTTTTTAATA-AA
1 AA-AATTTTAAAATATAA
*
618595 AAAATATTTAAAATATAT
1 AAAAT-TTTAAAATATAA
618613 AAAATTTTAAAAT
1 AAAATTTTAAAAT
618626 CTTTAAGGGA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
16 3 0.08
17 19 0.50
18 10 0.26
19 6 0.16
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
AAAATTTTAAAATATAA
Found at i:622055 original size:18 final size:18
Alignment explanation
Indices: 622032--622066 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
622022 TTCCATCCGG
*
622032 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
622050 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
622067 GTCCTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:639222 original size:2 final size:2
Alignment explanation
Indices: 639215--639268 Score: 63
Period size: 2 Copynumber: 26.5 Consensus size: 2
639205 AGCTGAAAGA
* * *
639215 AT AT AT AT GT AT AT AC AT AT CAT CT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT
*
639258 AT AT AT GT AT A
1 AT AT AT AT AT A
639269 GAAGGGAGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 41 0.95
3 2 0.05
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (2 bp):
AT
Found at i:643053 original size:16 final size:16
Alignment explanation
Indices: 643032--643064 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
643022 GGTGGTATCG
*
643032 ATACCCCTCATAGGGT
1 ATACCCCACATAGGGT
643048 ATACCCCACATAGGGT
1 ATACCCCACATAGGGT
643064 A
1 A
643065 CCGATACCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.21
Consensus pattern (16 bp):
ATACCCCACATAGGGT
Found at i:644654 original size:22 final size:21
Alignment explanation
Indices: 644603--644679 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 21
644593 TTGATTCATG
*
644603 GGGTATCGATACCTGTATGAATA
1 GGGTATCGATACC--TATGAAGA
644626 --GTATCGATACCATATGGAAG-
1 GGGTATCGATACC-TAT-GAAGA
*
644646 GGGTATCGATACCTATGAGGA
1 GGGTATCGATACCTATGAAGA
*
644667 GGGTATTGATACC
1 GGGTATCGATACC
644680 CGGGGAAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
20 6 0.13
21 29 0.63
22 11 0.24
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (21 bp):
GGGTATCGATACCTATGAAGA
Found at i:645566 original size:23 final size:23
Alignment explanation
Indices: 645540--645584 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
645530 CACCACAGCT
*
645540 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* *
645563 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
645585 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:645727 original size:25 final size:26
Alignment explanation
Indices: 645692--645742 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
645682 CAAAGAATAT
645692 ATATATATCCCGAAGGACCGCGTAGA
1 ATATATATCCCGAAGGACCGCGTAGA
645718 ATAT-TATCCCGAAGGACCGCGTAGA
1 ATATATATCCCGAAGGACCGCGTAGA
645743 CCCTCTACTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.20
Consensus pattern (26 bp):
ATATATATCCCGAAGGACCGCGTAGA
Found at i:650478 original size:23 final size:23
Alignment explanation
Indices: 650452--650496 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
650442 CACCACAGCT
*
650452 CGTATAAATACACCGAAGTGCCG
1 CGTAGAAATACACCGAAGTGCCG
* * *
650475 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATACACCGAAGTGCC
650497 ATATAATGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATACACCGAAGTGCCG
Found at i:652345 original size:21 final size:21
Alignment explanation
Indices: 652321--652365 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
652311 TTTTGTTCGT
* *
652321 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
652342 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
652363 TTG
1 TTG
652366 CCCAAAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:654063 original size:31 final size:32
Alignment explanation
Indices: 654014--654096 Score: 102
Period size: 31 Copynumber: 2.7 Consensus size: 32
654004 GTTACTTTTA
*
654014 TCATTCGGGAC--ATGGACAGTTTACCTATG-
1 TCATTCGGGACATATGGACAGGTTACCTATGT
654043 TCATTCGGGACATATGGACAGGTTACCTATGT
1 TCATTCGGGACATATGGACAGGTTACCTATGT
** *
654075 TC-TTCGAAACATATGGATAGGT
1 TCATTCGGGACATATGGACAGGT
654097 CATTCGGGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
29 11 0.23
31 34 0.72
32 2 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (32 bp):
TCATTCGGGACATATGGACAGGTTACCTATGT
Found at i:658468 original size:21 final size:21
Alignment explanation
Indices: 658442--658502 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
658432 CAGAACCCCA
* *
658442 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGGTTCCCCTGT
658463 GGGGGGAATCGGTTCCCCTGT
1 GGGGGGAATCGGTTCCCCTGT
658484 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGGTTCCCCT
658503 TCAAAGGGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.10, C:0.25, G:0.41, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGGTTCCCCTGT
Found at i:658511 original size:23 final size:21
Alignment explanation
Indices: 658443--658523 Score: 92
Period size: 21 Copynumber: 3.8 Consensus size: 21
658433 AGAACCCCAG
* * *
658443 GGGGGTATCGATTCCCCTGTG
1 GGGGGAATCGGTTCCCCTGTA
*
658464 GGGGGAATCGGTTCCCCTGTG
1 GGGGGAATCGGTTCCCCTGTA
658485 GGGGGAATCGGTTCCCCT-TCAAA
1 GGGGGAATCGGTTCCCCTGT---A
658508 GGGGGAATCGGTTCCC
1 GGGGGAATCGGTTCCC
658524 TCATGGGGGG
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
20 1 0.02
21 37 0.69
23 16 0.30
ACGTcount: A:0.14, C:0.25, G:0.38, T:0.23
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCCTGTA
Found at i:658534 original size:21 final size:21
Alignment explanation
Indices: 658462--658545 Score: 91
Period size: 21 Copynumber: 4.0 Consensus size: 21
658452 GATTCCCCTG
*
658462 TGGGGGGAATCGGTTCCC-CTG
1 TGGGGGGAATCGGTTCCCTC-A
658483 TGGGGGGAATCGGTTCCCCTTCA
1 TGGGGGGAATCGGTT-CCC-TCA
**
658506 AAGGGGGAATCGGTTCCCTCA
1 TGGGGGGAATCGGTTCCCTCA
*
658527 TGGGGGG-ATCGATTCCCTC
1 TGGGGGGAATCGGTTCCCTC
658546 TGCACCAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 11 0.20
21 23 0.43
22 6 0.11
23 13 0.24
24 1 0.02
ACGTcount: A:0.14, C:0.25, G:0.37, T:0.24
Consensus pattern (21 bp):
TGGGGGGAATCGGTTCCCTCA
Found at i:662397 original size:22 final size:22
Alignment explanation
Indices: 662356--662403 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
662346 GAGTTTGTTT
*
662356 TCATTTTTCAATTTTGAAAC-A
1 TCATTTTTCAATTTTAAAACAA
662377 TCATTTTT-ATATTTTAAAAACAA
1 TCATTTTTCA-ATTTT-AAAACAA
662400 TCAT
1 TCAT
662404 CCCCGAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 1 0.04
21 13 0.57
22 4 0.17
23 5 0.22
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (22 bp):
TCATTTTTCAATTTTAAAACAA
Found at i:666415 original size:12 final size:13
Alignment explanation
Indices: 666384--666415 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
666374 CATCTCTTCT
666384 TCTTCA-TCATCG
1 TCTTCATTCATCG
666396 TCTTCATTCATC-
1 TCTTCATTCATCG
666408 TCTTCATT
1 TCTTCATT
666416 TGAATCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.16, C:0.31, G:0.03, T:0.50
Consensus pattern (13 bp):
TCTTCATTCATCG
Found at i:666504 original size:12 final size:12
Alignment explanation
Indices: 666460--666504 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
666450 GCAATGCCTA
666460 TTTTCTTC-TTC
1 TTTTCTTCATTC
666471 TTTTCTTCATTC
1 TTTTCTTCATTC
*
666483 TTCTT-GTCATTC
1 TT-TTCTTCATTC
666495 TTTTCTTCAT
1 TTTTCTTCAT
666505 CATCTTCCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 10 0.34
12 17 0.59
13 2 0.07
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTCTTCATTC
Found at i:679664 original size:15 final size:16
Alignment explanation
Indices: 679625--679666 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
679615 AAAACAGACC
*
679625 AATTTTTTTATCTTAAA
1 AATTATTTT-TCTTAAA
*
679642 AATGATTTTTCTT-AA
1 AATTATTTTTCTTAAA
679657 AATTATTTTT
1 AATTATTTTT
679667 AAAAGACGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 11 0.50
16 4 0.18
17 7 0.32
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (16 bp):
AATTATTTTTCTTAAA
Found at i:683467 original size:80 final size:82
Alignment explanation
Indices: 683250--684154 Score: 860
Period size: 83 Copynumber: 11.0 Consensus size: 82
683240 ACCCTCAAAA
* * *
683250 AAAGACATTCGAATTCGATTACACTT-AGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCA
1 AAAGACCTTCGAGTTCGATTACA-TTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCA
* *
683314 AGAAGAGCTATCTGCCAAC
65 AGAAGGGCTATCTGTC-AC
* * *
683333 AAAAGACCTTCAAGTTCGATTACGTTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCA
1 -AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCA
683398 AGAAGGGCTATCTG-C-C
65 AGAAGGGCTATCTGTCAC
* *
683414 AAAGACCTTCGAGTTCGATTCCATTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAA
* *
683479 GAAGGGATATATGTCAAC
66 GAAGGGCTATCTGTC-AC
* * * * * *
683497 AAAGACCTTCGAGTTCTATTACACTT-AGCTCAAATGCACATCATTTGCAACATAGTTTAAGGCA
1 AAAGACCTTCGAGTTCGATTACA-TTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCA
* * *
683561 AGAAGAGATATCT-AC-C
65 AGAAGGGCTATCTGTCAC
* * * * * *
683577 AAAGACCTTCGAGTTCGATTACACTCAGCTAAAAGGTACATCATTTACAACATAACTCAAGGCTA
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAA
*
683642 GAAGGGTTATCTGTCAAC
66 GAAGGGCTATCTGTC-AC
* * * **
683660 AAAGACCTTCGAGTTCGATTACACTCAGTTCTAAGGCACATCATTTGTAGCATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAA
683725 GAAGGGCTATCTG-C-C
66 GAAGGGCTATCTGTCAC
* * * *
683740 TAAGACATTCGAGTTCGATTACACTT-AGCTCAAAGGCACATCATTTACA-CTATAACTAAAGGC
1 AAAGACCTTCGAGTTCGATTACA-TTCAGCTCAAAGGCACATCATTTACAGC-ATAGCTCAAGGC
* *
683803 GAGAAGGGTTATCTGTCATC
64 AAGAAGGGCTATCTGTCA-C
** * * * * * *
683823 AAATTCATTTGAGTTCGATTATATTCAACTCAAAGGCATATCAAATTTACAGCATAACTCAAGGC
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATC--ATTTACAGCATAGCTCAAGGC
*
683888 --G-A--G-AATCTGTCATC
64 AAGAAGGGCTATCTGTCA-C
* *
683902 AAAGACCTTCGAGTTCGATTACATTCAGCTCAGAGGCATATCAAATTTACAGCATAGCTCAAGGC
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATC--ATTTACAGCATAGCTCAAGGC
*
683967 GAGAAGGGCTATCTGTCAAC
64 AAGAAGGGCTATCTGTC-AC
* * *
683987 AATGAAACCTTTGAGTTCGATTACATTCAGCTC-AAGG-ACATGTCAAATTTACAGCATAGCTTA
1 AA--AGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACA--TC--ATTTACAGCATAGCTCA
* ** *
684050 AAGTGAGAAGAGCTATCTGTCAC
60 AGGCAAGAAGGGCTATCTGTCAC
* ** * * * *
684073 CAA-ACCTTTAAGTTCGATTACATTCAGTTC-ATGGACATATCAAATTTACAGCATAACTCAAGG
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGG-CACATC--ATTTACAGCATAGCTCAAGG
*
684136 CGAGAAGGGCTATCTGTCA
63 CAAGAAGGGCTATCTGTCA
684155 ACAAGAATTT
Statistics
Matches: 701, Mismatches: 89, Indels: 63
0.82 0.10 0.07
Matches are distributed among these distances:
79 69 0.10
80 202 0.29
81 6 0.01
82 6 0.01
83 239 0.34
84 74 0.11
85 32 0.05
86 8 0.01
87 65 0.09
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (82 bp):
AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAA
GAAGGGCTATCTGTCAC
Found at i:683588 original size:163 final size:163
Alignment explanation
Indices: 683250--684158 Score: 899
Period size: 163 Copynumber: 5.5 Consensus size: 163
683240 ACCCTCAAAA
* * *
683250 AAAGACATTCGAATTCGATTACACTT-AGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCA
1 AAAGACCTTCGAGTTCGATTACA-TTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCA
* * * *
683314 AGAAGAGCTATCTGCCAACAAAAGACCTTCAAGTTCGATTACGTTCAGCTCAAAGGCACATCATT
65 AGAAGGGCTATCTGTCAAC-AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATT
* * *
683379 TGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCC
129 TGCAGCATAGCTCAAGGCAAGAAGAGATATCTACC
* *
683414 AAAGACCTTCGAGTTCGATTCCATTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAA
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAA
* * * *
683479 GAAGGGATATATGTCAACAAAGACCTTCGAGTTCTATTACACTT-AGCTCAAATGCACATCATTT
66 GAAGGGCTATCTGTCAACAAAGACCTTCGAGTTCGATTACA-TTCAGCTCAAAGGCACATCATTT
* * *
683543 GCAACATAGTTTAAGGCAAGAAGAGATATCTACC
130 GCAGCATAGCTCAAGGCAAGAAGAGATATCTACC
* * * * * *
683577 AAAGACCTTCGAGTTCGATTACACTCAGCTAAAAGGTACATCATTTACAACATAACTCAAGGCTA
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAA
* * * *
683642 GAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACACTCAGTTCTAAGGCACATCATTTG
66 GAAGGGCTATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTG
* * * *
683707 TAGCATAGCTCAAGGCAAGAAGGGCTATCTGCC
131 CAGCATAGCTCAAGGCAAGAAGAGATATCTACC
* * * *
683740 TAAGACATTCGAGTTCGATTACACTT-AGCTCAAAGGCACATCATTTACA-CTATAACTAAAGGC
1 AAAGACCTTCGAGTTCGATTACA-TTCAGCTCAAAGGCACATCATTTACAGC-ATAGCTCAAGGC
* * * ** * * * * *
683803 GAGAAGGGTTATCTGTCATCAAATTCATTTGAGTTCGATTATATTCAACTCAAAGGCATATCAAA
64 AAGAAGGGCTATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATC--A
* * * * *
683868 TTTACAGCATAACTCAAGGC--G-AGA-ATCTGTCATC
127 TTTGCAGCATAGCTCAAGGCAAGAAGAGATATCT-ACC
* *
683902 AAAGACCTTCGAGTTCGATTACATTCAGCTCAGAGGCATATCAAATTTACAGCATAGCTCAAGGC
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATC--ATTTACAGCATAGCTCAAGGC
* * *
683967 GAGAAGGGCTATCTGTCAACAATGAAACCTTTGAGTTCGATTACATTCAGCTC-AAGG-ACATGT
64 AAGAAGGGCTATCTGTCAACAA--AGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACA--T
* * * ** *
684030 CAAATTTACAGCATAGCTTAAAGTGAGAAGAGCTATCTGTCACC
125 C--ATTTGCAGCATAGCTCAAGGCAAGAAGAGATATC--T-ACC
** * * * *
684074 -AA-ACCTTTAAGTTCGATTACATTCAGTTC-ATGGACATATCAAATTTACAGCATAACTCAAGG
1 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGG-CACATC--ATTTACAGCATAGCTCAAGG
*
684136 CGAGAAGGGCTATCTGTCAACAA
63 CAAGAAGGGCTATCTGTCAACAA
684159 GAATTTCCAA
Statistics
Matches: 628, Mismatches: 94, Indels: 40
0.82 0.12 0.05
Matches are distributed among these distances:
161 5 0.01
162 40 0.06
163 312 0.50
164 115 0.18
165 23 0.04
166 45 0.07
168 1 0.00
169 5 0.01
170 76 0.12
171 2 0.00
172 4 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (163 bp):
AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAAGGCAA
GAAGGGCTATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCATTTG
CAGCATAGCTCAAGGCAAGAAGAGATATCTACC
Found at i:684830 original size:20 final size:20
Alignment explanation
Indices: 684805--684845 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
684795 TTCGACCATC
684805 GTGAATAGTGACCGGCGGTG
1 GTGAATAGTGACCGGCGGTG
*
684825 GTGAATAGTGATCGGCGGTG
1 GTGAATAGTGACCGGCGGTG
684845 G
1 G
684846 CAGCGCACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.12, G:0.46, T:0.22
Consensus pattern (20 bp):
GTGAATAGTGACCGGCGGTG
Found at i:685293 original size:22 final size:22
Alignment explanation
Indices: 685268--685317 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
685258 AATGATTTCA
*
685268 TTTTAATTAATTATTTTGTG-T
1 TTTTAATTAATTATTGTGTGAT
**
685289 GTTTTGTTTAATTATTGTGTGAT
1 -TTTTAATTAATTATTGTGTGAT
685312 TTTTAA
1 TTTTAA
685318 ACACTTTCTT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.22, C:0.00, G:0.14, T:0.64
Consensus pattern (22 bp):
TTTTAATTAATTATTGTGTGAT
Found at i:685469 original size:3 final size:3
Alignment explanation
Indices: 685463--685494 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
685453 ATTTTTTTCA
685463 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
685495 CTATCTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:685814 original size:14 final size:14
Alignment explanation
Indices: 685792--685825 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
685782 TTGTTTTGTC
*
685792 TTAAAAAATGATTTT
1 TTAAAAATTG-TTTT
685807 TTAAAAATTGTTTT
1 TTAAAAATTGTTTT
685821 TTAAA
1 TTAAA
685826 GACGTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
TTAAAAATTGTTTT
Found at i:686936 original size:22 final size:21
Alignment explanation
Indices: 686910--686965 Score: 64
Period size: 20 Copynumber: 2.7 Consensus size: 21
686900 ATACTTTGTT
686910 TTCATTTTCTATAATTTATAAA-
1 TTCATTTTCT-TAATTTA-AAAG
686932 TTCA--TTCTTAAGTTTAAAAG
1 TTCATTTTCTTAA-TTTAAAAG
686952 TTCATTTTCTTAAT
1 TTCATTTTCTTAAT
686966 ATAATTTACT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
19 6 0.20
20 12 0.40
21 1 0.03
22 11 0.37
ACGTcount: A:0.32, C:0.11, G:0.04, T:0.54
Consensus pattern (21 bp):
TTCATTTTCTTAATTTAAAAG
Found at i:689078 original size:16 final size:17
Alignment explanation
Indices: 689054--689094 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
689044 ATGAGCTACA
*
689054 TTAACTTTA-TTTTCCT
1 TTAAGTTTATTTTTCCT
689070 TTAAGTTTATTTTTCCT
1 TTAAGTTTATTTTTCCT
689087 TTAAGTTT
1 TTAAGTTT
689095 GACACTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.63
Consensus pattern (17 bp):
TTAAGTTTATTTTTCCT
Found at i:689192 original size:32 final size:29
Alignment explanation
Indices: 689152--689219 Score: 101
Period size: 27 Copynumber: 2.5 Consensus size: 29
689142 TTAAATTGAA
689152 TCCTTAGATTTAGATATC-ATTATTTTAT
1 TCCTTAGATTTAGATATCAATTATTTTAT
689180 TCC-TA-ATTTAGATATCAATTATTTTAT
1 TCCTTAGATTTAGATATCAATTATTTTAT
689207 TCC-TA-ATTTAGAT
1 TCCTTAGATTTAGAT
689220 TATTATTTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
26 11 0.28
27 25 0.64
28 3 0.08
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.51
Consensus pattern (29 bp):
TCCTTAGATTTAGATATCAATTATTTTAT
Found at i:689208 original size:27 final size:26
Alignment explanation
Indices: 689159--689227 Score: 115
Period size: 27 Copynumber: 2.7 Consensus size: 26
689149 GAATCCTTAG
689159 ATTTAGATATCATTATTTTATTCCTA
1 ATTTAGATATCATTATTTTATTCCTA
689185 ATTTAGATATCAATTATTTTATTCCTA
1 ATTTAGATATC-ATTATTTTATTCCTA
689212 ATTTAGAT-T-ATTATTT
1 ATTTAGATATCATTATTT
689228 AGCCATCGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
24 7 0.17
26 12 0.29
27 23 0.55
ACGTcount: A:0.32, C:0.09, G:0.04, T:0.55
Consensus pattern (26 bp):
ATTTAGATATCATTATTTTATTCCTA
Found at i:689428 original size:18 final size:17
Alignment explanation
Indices: 689393--689439 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
689383 CTTACTATTA
689393 TATTATATTTT-TTTTAT
1 TATTAT-TTTTGTTTTAT
689410 TATTATTTTTGTCTTTAT
1 TATTATTTTTGT-TTTAT
*
689428 TATTATTATTGT
1 TATTATTTTTGT
689440 ATAATTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 4 0.15
17 7 0.26
18 16 0.59
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (17 bp):
TATTATTTTTGTTTTAT
Found at i:689447 original size:21 final size:21
Alignment explanation
Indices: 689423--689463 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
689413 TATTTTTGTC
*
689423 TTTATTATTATTATTGTATAA
1 TTTATTATTATTATTATATAA
689444 TTTATTATTATTATTATATA
1 TTTATTATTATTATTATATA
689464 TTCTATACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTATTATTATTATTATATAA
Found at i:693118 original size:53 final size:53
Alignment explanation
Indices: 693038--693146 Score: 202
Period size: 53 Copynumber: 2.1 Consensus size: 53
693028 GACCAGATTG
693038 GCAGACAAAACTCGGGACTCCATCCAAGAGATAACACAAAATTCATTCATGTT
1 GCAGACAAAACTCGGGACTCCATCCAAGAGATAACACAAAATTCATTCATGTT
693091 GCAGACAAAAAC-CGGGACTCCATCCAAGAGATAACACAAAATTCATTCATGTT
1 GCAGAC-AAAACTCGGGACTCCATCCAAGAGATAACACAAAATTCATTCATGTT
693144 GCA
1 GCA
693147 TGCATCTTAG
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
53 50 0.91
54 5 0.09
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.19
Consensus pattern (53 bp):
GCAGACAAAACTCGGGACTCCATCCAAGAGATAACACAAAATTCATTCATGTT
Found at i:693867 original size:84 final size:83
Alignment explanation
Indices: 693608--694776 Score: 944
Period size: 84 Copynumber: 14.1 Consensus size: 83
693598 TTTTTTTCTG
* * * * * *
693608 TTTGCAGCATAGCTTAAGTCGAGAAGGGTTGTCTG---CCAGAGA-CTCTCGAGTTGGATTACAC
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTCACCAAAGACCT-TCGAGTTCGACTACAC
* *
693669 TCAGCTTCGAGGGCACATCA
65 TCAGC-TCCAAGGCACATCA
* * * * *
693689 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG---CCAAAGA-CTCTCGAGTTCGATTATAC
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTCACCAAAGACCT-TCGAGTTCGACTACAC
* *
693750 TCAGCTTCGAGGGCACATCA
65 TCAGC-TCCAAGGCACATCA
* * * * **
693770 TTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTTGAGTTCGACTATGC
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTCACC-AAAGACCTTCGAGTTCGACTACAC
*
693835 TCAGCTCCAAGGCATATCA
65 TCAGCTCCAAGGCACATCA
* * * *
693854 TTTGTAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGC
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACAC
* * *
693919 TCGGCTCCAAGACACATTA
65 TCAGCTCCAAGGCACATCA
* * ** *
693938 TTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTG---CCAAAGATCCCCCGAGTTCGATTACAC
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTCACCAAAGA-CCTTCGAGTTCGACTACAC
* *
694000 TCAGCTTCGAGGGCACATCA
65 TCAGC-TCCAAGGCACATCA
* *
694020 TTTGCAGCATAACTTAAGTCAAGAAGGGTTATCT-TCCAACCAAAGACCTTCGAGTTCGACTACG
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGT-C-ACCAAAGACCTTCGAGTTCGACTACA
694084 CTCAGCTCCAAGGCACATCA
64 CTCAGCTCCAAGGCACATCA
* * * * * * *
694104 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG---CTAAAGACC-CCGACTTCGATTACACT
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACACT
* * *
694165 CAGCTTCGAGGGCATATCA
66 CAGC-TCCAAGGCACATCA
* * * * * *
694184 TTTACAGTATAACTCAAGGCTAGAAGGGTTATTTGTCACCAAATACCTTCGAGTTCGACTACACT
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACACT
*
694249 CAGCTCCAAGGCATATCA
66 CAGCTCCAAGGCACATCA
* ** * * * * * *
694267 TTTGCAGCACAACTTAAGTCTAGAAGGGTCGTCTGCCAACAAAATACCTTTGAGTTTGACTACGC
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACAC
* *
694332 TCAGCTCCAAGACGCATCA
65 TCAGCTCCAAGGCACATCA
* * * * *
694351 TTTGCAGTATAGCTTAAGTCGAGAAGGG-T-TCTG---CCAAAGACCCTCGAGTTCGATTACACT
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACACT
* * *
694411 CAGCTTCGAGGGCATATCA
66 CAGC-TCCAAGGCACATCA
** * * * * * * * * * *
694430 TTTGCAATATAGCTCAAGGCAAGAAGGGCTAT-TTTCCAACAAAAGACTTTTGAGTTCGACTACG
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGT-C-ACCAAAGACCTTCGAGTTCGACTACA
* *
694494 TTCAGCTCCAAGGTACATCA
64 CTCAGCTCCAAGGCACATCA
* * * * * * *
694514 TTTGCAGCATAACTCAAGGCTATAAGGGTTATCTGGCAACAAAGACCTTCGAGTTTGATTACACT
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACACT
* * *
694579 CAGCTCAAAGGTACAACA
66 CAGCTCCAAGGCACATCA
* * * * * * * * *
694597 TTTGTAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAACCAAATACTTTCAAGTTCGATTACAC
1 TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACAC
* * *
694662 TCAGCTTCAGATGCATATCA
65 TCAGCTCCA-AGGCACATCA
* * * * * *
694682 TTTGCAGCATAACTCAAGGT-TAGAAGAGTTATATGCCAACCAAAGACCTTTGAGTTCGACTACG
1 TTTGCAGCATAACTTAA-GTCTAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACA
*
694746 CTCAGCTCCAGGGCACATCA
64 CTCAGCTCCAAGGCACATCA
*
694766 TTTACAGCATA
1 TTTGCAGCATA
694777 GCTCAAGGCA
Statistics
Matches: 878, Mismatches: 178, Indels: 61
0.79 0.16 0.05
Matches are distributed among these distances:
78 24 0.03
79 50 0.06
80 55 0.06
81 125 0.14
82 46 0.05
83 112 0.13
84 321 0.37
85 134 0.15
86 11 0.01
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (83 bp):
TTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACACT
CAGCTCCAAGGCACATCA
Found at i:694211 original size:330 final size:327
Alignment explanation
Indices: 693608--694797 Score: 1182
Period size: 330 Copynumber: 3.6 Consensus size: 327
693598 TTTTTTTCTG
* * * * *
693608 TTTGCAGCATAGCTTAAGTCGAGAAGGGTTGTCTGCC--AGAGACTCTCGAGTTGGATTACACTC
1 TTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAAATACCCTCGAGTTCGATTACACTC
* * *
693671 AGCTTCGAGGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGA-CTCT
66 AGCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAAAGACCT-T
* * * * * *
693735 CGAGTTCGATTATACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTT
130 CGAGTTCGACTACACTCAGCTTCCAGGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGCT
* *
693800 ATCTGTCACCAAAAGACCTTTGAGTTCGACTATGCTCAGCTCCAAGGCATATCATTTGTAGCATA
195 ATCTG----CAAAAGACC-TTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATA
* * * * *
693865 ACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCGGCTCCAAG
255 ACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAG
* *
693930 ACACATTA
320 GCACATCA
* *
693938 TTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGAT-CCCCCGAGTTCGATTACACTC
1 TTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAAATACCCTCGAGTTCGATTACACTC
*
694002 AGCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTTCCAACCAAAGAC
66 AGCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATC-T---ACCAAAGAC
* * * * * *
694067 CTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGG
127 CTTCGAGTTCGACTACACTCAGCTTCCAGGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGG
* ** * * * * * * *
694131 GCTATCTGCTAAAGACCCCGACTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGTATAA
192 GCTATCTGCAAAAGACCTTGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATTTGCAGCATAA
* * *
694196 CTCAAGGCTAGAAGGGTTATTTGTC-ACCAAATACCTTCGAGTTCGACTACACTCAGCTCCAAGG
256 CTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGG
*
694260 CATATCA
321 CACATCA
* * * ** * * * * *
694267 TTTGCAGCACAACTTAAGTCTAGAAGGGTCGTCTGCCAACAAAATACCTTTGAGTTTGACTACGC
1 TTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCC-A-AAAATACCCTCGAGTTCGATTACAC
* * * * * * * *
694332 TCAGC-TCCAAGACGCATCATTTGCAGTATAGCTTAAGTCGAGAAGGG-T-TCTGCCAAAGACCC
64 TCAGCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAAAGACCT
* * * * **
694394 TCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTGCAATATAGCTCAAGGCAAGAAGGGC
129 TCGAGTTCGACTACACTCAGCTTCCAGGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGC
** * * * *
694459 TATTTTCCAACAAAAGACTTTTGAGTTCGACTACGTTCAGCTCCAAGGTACATCATTTGCAGCAT
194 TA---T-CTGCAAAAGAC-CTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCAT
* * * * *
694524 AACTCAAGGCTATAAGGGTTATCTGGCAA-CAAAGACCTTCGAGTTTGATTACACTCAGCTCAAA
254 AACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAA
* *
694588 GGTACAACA
319 GGCACATCA
* * * ** *
694597 TTTGTAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAACCAAATACTTTCAAGTTCGATTACAC
1 TTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAA--AAATACCCTCGAGTTCGATTACAC
* * * * * *
694662 TCAGCTTC-AGATGCATATCATTTGCAGCATAACTCAAGGT-TAGAAGAGTTATATGCCAACCAA
64 TCAGCTTCGAG-GGCACATCATTTGCAGCATAACTTAA-GTCGAGAAG-GGT-TAT--CTACCAA
* *
694725 AGACCTTTGAGTTCGACTACGCTCAGC-TCCAGGGCACATCATTTACAGCATAGCTCAAGGCAAG
123 AGACCTTCGAGTTCGACTACACTCAGCTTCCAGGGCACATCATTTACAGCATAGCTCAAGGCAAG
694789 AAGGGCTAT
188 AAGGGCTAT
694798 ATGTCGATAA
Statistics
Matches: 697, Mismatches: 134, Indels: 55
0.79 0.15 0.06
Matches are distributed among these distances:
325 28 0.04
326 37 0.05
328 2 0.00
329 91 0.13
330 228 0.33
331 147 0.21
332 25 0.04
333 1 0.00
334 42 0.06
335 26 0.04
336 42 0.06
337 28 0.04
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (327 bp):
TTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAAATACCCTCGAGTTCGATTACACTC
AGCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTACCAAAGACCTTC
GAGTTCGACTACACTCAGCTTCCAGGGCACATCATTTACAGCATAGCTCAAGGCAAGAAGGGCTA
TCTGCAAAAGACCTTGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTCAA
GGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACAT
CA
Found at i:694339 original size:247 final size:246
Alignment explanation
Indices: 693608--694793 Score: 1222
Period size: 246 Copynumber: 4.8 Consensus size: 246
693598 TTTTTTTCTG
* * * *
693608 TTTGCAGCATAGCTTAAGTCGAGAAGGGTTGTCTGCCAGAGACTCTCGAGTTGGATTACACTCAG
1 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGAC-CTCGAGTTCGATTACACTCAG
* * * *
693673 CTTCGAGGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG--CCAAAGA-CTCT
65 CTTCGAGGGCATATCATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCACCAAAGACCT-T
* * * *
693735 CGAGTTCGATTATACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTT
129 CGAGTTCGACTACACTCAGC-TCCAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTT
* * * * *
693800 ATCTGTCACCAAAAGACCTTTGAGTTCGACTATGCTCAGCTCCAAGGCATATCA
193 ATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
* * * * *
693854 TTTGTAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGC
1 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG----CCAAAGACC-TCGAGTTCGATTACAC
* * * * * * * *
693919 TCGGC-TCCAAGACACATTATTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTG--CCAAAGAT
61 TCAGCTTCGAGGGCATATCATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCACCAAAGA-
** * * * * *
693981 CCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTTAAGTCAAGAAG
125 CCTTCGAGTTCGACTACACTCAGC-TCCAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAG
* *
694046 GGTTATCTTCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
189 GGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
* * *
694104 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCTAAAGACCCCGACTTCGATTACACTCAGC
1 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTCGAGTTCGATTACACTCAGC
* * * * * *
694169 TTCGAGGGCATATCATTTACAGTATAACTCAAGGCTAGAAGGGTTATTTGTCACCAAATACCTTC
66 TTCGAGGGCATATCATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTG-CACCAAAGACCTTC
* * * * * **
694234 GAGTTCGACTACACTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTCGT
130 GAGTTCGACTACACTCAGCTCCAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTAT
* * * * *
694299 CTGCCAACAAAATACCTTTGAGTTTGACTACGCTCAGCTCCAAGACGCATCA
195 CTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
*
694351 TTTGCAGTATAGCTTAAGTCGAGAAGGG-T-TCTGCCAAAGACCCTCGAGTTCGATTACACTCAG
1 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGA-CCTCGAGTTCGATTACACTCAG
** * * * * * *
694414 CTTCGAGGGCATATCATTTGCAATATAGCTCAAGGCAAGAAGGGCTATTTTCCAACAAAAGACTT
65 CTTCGAGGGCATATCATTTGCAGCATAGCTCAAGGCGAGAAGGGTTA-TCTGC-ACCAAAGACCT
* ** * * *
694479 TTGAGTTCGACTACGTTCAGCTCCAAGGTACATCATTTGCAGCATAACTCAAGGCTATAAGGGTT
128 TCGAGTTCGACTACACTCAGCTCCAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTT
* * * * * * *
694544 ATCTGGCAAC-AAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGGTACAACA
193 ATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
* * * * *
694597 TTTGTAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAACCAAATACTTTCAAGTTCGATTACAC
1 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG----CCAAAGAC-CTCGAGTTCGATTACAC
* * ** * *
694662 TCAGCTTC-AGATGCATATCATTTGCAGCATAACTCAAGGTTAGAAGAGTTATATGCCAACCAAA
61 TCAGCTTCGAG-GGCATATCATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTG-C-ACCAAA
* * * * *
694726 GACCTTTGAGTTCGACTACGCTCAGCTCCAGGGCACATCATTTACAGCATAGCTCAAGGCAAGAA
123 GACCTTCGAGTTCGACTACACTCAGCTCCAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAA
694791 GGG
188 GGG
694794 CTATATGTCG
Statistics
Matches: 792, Mismatches: 125, Indels: 40
0.83 0.13 0.04
Matches are distributed among these distances:
245 26 0.03
246 200 0.25
247 186 0.23
248 25 0.03
249 58 0.07
250 163 0.21
251 6 0.01
252 128 0.16
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (246 bp):
TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTCGAGTTCGATTACACTCAGC
TTCGAGGGCATATCATTTGCAGCATAGCTCAAGGCGAGAAGGGTTATCTGCACCAAAGACCTTCG
AGTTCGACTACACTCAGCTCCAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATC
TGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
Found at i:696291 original size:18 final size:16
Alignment explanation
Indices: 696278--696333 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 16
696268 TATATTATAC
696278 TATTTTTTATTATTAT
1 TATTTTTTATTATTAT
*
696294 TTTTGTCTTTATTATTATT
1 TATT-T-TTTATTATTA-T
*
696313 GTATATTTTATTATTAT
1 -TATTTTTTATTATTAT
696330 TATT
1 TATT
696334 ATATATTCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 6 0.19
17 2 0.06
18 20 0.62
19 2 0.06
20 2 0.06
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (16 bp):
TATTTTTTATTATTAT
Found at i:696399 original size:9 final size:9
Alignment explanation
Indices: 696387--696460 Score: 51
Period size: 9 Copynumber: 7.9 Consensus size: 9
696377 ATTTATTTCG
696387 TTTATTTTT
1 TTTATTTTT
696396 TTTATCTTTGT
1 TTTAT-TTT-T
*
696407 ATTTCCTTTTT
1 -TTT-ATTTTT
**
696418 TTTATTTCA
1 TTTATTTTT
696427 TTTA-TTTT
1 TTTATTTTT
* *
696435 TTTACTTTC
1 TTTATTTTT
*
696444 TTTATTTTA
1 TTTATTTTT
696453 TTTATTTT
1 TTTATTTT
696461 CATTTTTTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
8 6 0.12
9 30 0.59
10 6 0.12
11 2 0.04
12 6 0.12
13 1 0.02
ACGTcount: A:0.14, C:0.08, G:0.01, T:0.77
Consensus pattern (9 bp):
TTTATTTTT
Found at i:696424 original size:31 final size:31
Alignment explanation
Indices: 696387--696460 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
696377 ATTTATTTCG
* *
696387 TTTATTTTTTTTATCTTTGTA-TTTCCTTTTT
1 TTTATTTATTTTATCTTTGTACTTT-CTTTAT
* *
696418 TTTATTTCA-TTTATTTTTTTACTTTCTTTAT
1 TTTATTT-ATTTTATCTTTGTACTTTCTTTAT
696449 TTTATTTATTTT
1 TTTATTTATTTT
696461 CATTTTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 1 0.03
31 32 0.89
32 3 0.08
ACGTcount: A:0.14, C:0.08, G:0.01, T:0.77
Consensus pattern (31 bp):
TTTATTTATTTTATCTTTGTACTTTCTTTAT
Found at i:696468 original size:17 final size:16
Alignment explanation
Indices: 696413--696470 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 16
696403 TTGTATTTCC
696413 TTTTT-TTTATTTCAT
1 TTTTTATTTATTTCAT
* *
696428 TTATTTTTTTACTTTCTT
1 TT-TTTATTTA-TTTCAT
696446 TATTTTATTTATTTTCAT
1 T-TTTTATTTA-TTTCAT
696464 TTTTTAT
1 TTTTTAT
696471 CTAACATGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 2 0.06
16 3 0.09
17 10 0.29
18 19 0.54
19 1 0.03
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTATTTATTTCAT
Found at i:700037 original size:28 final size:28
Alignment explanation
Indices: 699982--700038 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
699972 CTGTCCGTTT
* * * *
699982 ACATTATATTGTCGAGTCAGTGCTTGAA
1 ACATTATATCGTCAAGTCAGTACCTGAA
700010 ACATTATATCGTCAAGTCAGTACCTGAA
1 ACATTATATCGTCAAGTCAGTACCTGAA
700038 A
1 A
700039 GCAATGACGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (28 bp):
ACATTATATCGTCAAGTCAGTACCTGAA
Found at i:700318 original size:3 final size:3
Alignment explanation
Indices: 700310--700359 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
700300 CTTCATCCAA
700310 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
700358 AT
1 AT
700360 CTTTTAGGGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:701444 original size:2 final size:2
Alignment explanation
Indices: 701437--701466 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
701427 AATTAAATTA
701437 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
701467 TATTGTAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:702289 original size:23 final size:23
Alignment explanation
Indices: 702263--702307 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
702253 AGATTTTTTA
*
702263 AAAATATATTAAGAATTAAATTG
1 AAAATATAATAAGAATTAAATTG
* *
702286 AAAATTTAATAATAATTAAATT
1 AAAATATAATAAGAATTAAATT
702308 AAATGAATCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
AAAATATAATAAGAATTAAATTG
Found at i:703846 original size:16 final size:16
Alignment explanation
Indices: 703825--703873 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 16
703815 ACTGACCCGA
703825 GTCCCTTATTTCGTGT
1 GTCCCTTATTTCGTGT
703841 GTCCCTTATTTTGACGTGT
1 GTCCCTTA-TTT--CGTGT
703860 GTCCCTTATTTCGT
1 GTCCCTTATTTCGT
703874 TGGCCTGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 11 0.37
17 3 0.10
18 3 0.10
19 13 0.43
ACGTcount: A:0.08, C:0.24, G:0.18, T:0.49
Consensus pattern (16 bp):
GTCCCTTATTTCGTGT
Found at i:704411 original size:85 final size:85
Alignment explanation
Indices: 704268--704438 Score: 342
Period size: 85 Copynumber: 2.0 Consensus size: 85
704258 AGGCACCTTT
704268 GCCAAGGTTTATTACGGTAAAAACTTGTCAACCCAAGAAAGTGTAGCCATCAAAGTTATCAACAA
1 GCCAAGGTTTATTACGGTAAAAACTTGTCAACCCAAGAAAGTGTAGCCATCAAAGTTATCAACAA
704333 AGAGCAAGTGAAGAAAGAAG
66 AGAGCAAGTGAAGAAAGAAG
704353 GCCAAGGTTTATTACGGTAAAAACTTGTCAACCCAAGAAAGTGTAGCCATCAAAGTTATCAACAA
1 GCCAAGGTTTATTACGGTAAAAACTTGTCAACCCAAGAAAGTGTAGCCATCAAAGTTATCAACAA
704418 AGAGCAAGTGAAGAAAGAAG
66 AGAGCAAGTGAAGAAAGAAG
704438 G
1 G
704439 TTTGATGGAG
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (85 bp):
GCCAAGGTTTATTACGGTAAAAACTTGTCAACCCAAGAAAGTGTAGCCATCAAAGTTATCAACAA
AGAGCAAGTGAAGAAAGAAG
Found at i:706381 original size:16 final size:17
Alignment explanation
Indices: 706360--706392 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
706350 ATATTAAAAT
*
706360 TTGAATCTTA-AATTTA
1 TTGAATATTATAATTTA
706376 TTGAATATTATAATTTA
1 TTGAATATTATAATTTA
706393 AAGGGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (17 bp):
TTGAATATTATAATTTA
Found at i:709563 original size:28 final size:28
Alignment explanation
Indices: 709531--709601 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
709521 TTATTCATTT
*
709531 TTTTATTTTTTTTTTATTTTCAGTTTC-A
1 TTTTATTTTATTTTTA-TTTCAGTTTCTA
*
709559 TTTTACTTTTATTTTTATTTCGGTTTCTA
1 TTTTA-TTTTATTTTTATTTCAGTTTCTA
709588 TTTCTATTTTATTT
1 TTT-TATTTTATTT
709602 ACATTACAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
28 14 0.37
29 22 0.58
30 2 0.05
ACGTcount: A:0.14, C:0.08, G:0.04, T:0.73
Consensus pattern (28 bp):
TTTTATTTTATTTTTATTTCAGTTTCTA
Found at i:715007 original size:184 final size:185
Alignment explanation
Indices: 714716--715087 Score: 640
Period size: 184 Copynumber: 2.0 Consensus size: 185
714706 AATTAAATGT
* *
714716 TTTTTTAATTCAAAAAAAAGTTTATAATTAATTTAAATAATATATATTTATAAAATAAAAATTTC
1 TTTTTTAATTCAAAAAAAAGTTTACAATTAATTTAAATAATATATAATTATAAAATAAAAATTTC
*
714781 AGATAAATTTTTTAATTAATTAATATTGATTTAGGCTTAAAAGTTATTGGATCTTAAATTATTAA
66 AGATAAATTTTTTAATTAATTAATATTGATTTAGGCTTAAAAGTTATTGAATCTTAAATTATTAA
* *
714846 TTGA-TTTTAAATTGTTTGGGCTTAGCCCATATGTTATATATAATATATTTAATA
131 TTGAGTTTTAAATGGTTTGGGCTGAGCCCATATGTTATATATAATATATTTAATA
714900 TTTTTTAATT-AAAAAAATAGTTTACAATTAATTTAAATAATATATAATTATAAAATAAAAATTT
1 TTTTTTAATTCAAAAAAA-AGTTTACAATTAATTTAAATAATATATAATTATAAAATAAAAATTT
* * * *
714964 TATATAAGTTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTATTGAATCTTAAATTATTA
65 CAGATAAATTTTTTAATTAATTAATATTGATTTAGGCTTAAAAGTTATTGAATCTTAAATTATTA
715029 ATTGAGTTTTAAATGGTTTGGGCTGAGCCCATATGTTATATATAATATATTTAATA
130 ATTGAGTTTTAAATGGTTTGGGCTGAGCCCATATGTTATATATAATATATTTAATA
715085 TTT
1 TTT
715088 AAAATTTAAT
Statistics
Matches: 177, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
183 7 0.04
184 119 0.67
185 51 0.29
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.47
Consensus pattern (185 bp):
TTTTTTAATTCAAAAAAAAGTTTACAATTAATTTAAATAATATATAATTATAAAATAAAAATTTC
AGATAAATTTTTTAATTAATTAATATTGATTTAGGCTTAAAAGTTATTGAATCTTAAATTATTAA
TTGAGTTTTAAATGGTTTGGGCTGAGCCCATATGTTATATATAATATATTTAATA
Found at i:718032 original size:23 final size:23
Alignment explanation
Indices: 717987--718032 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
717977 CAATCTTATA
* *
717987 TGGCACTTCGGTGCAATTCTACG
1 TGGCACTTCAGTGCAATTATACG
*
718010 TGGCACTTCAGTGCATTTATACG
1 TGGCACTTCAGTGCAATTATACG
718033 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (23 bp):
TGGCACTTCAGTGCAATTATACG
Found at i:730784 original size:31 final size:31
Alignment explanation
Indices: 730749--730807 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
730739 TTTGCAAAGA
730749 AAGATTTTTATTATCTCTTTATAAAAGAGAC
1 AAGATTTTTATTATCTCTTTATAAAAGAGAC
730780 AAGATTTTTATTATCTCTTTATAAAAGA
1 AAGATTTTTATTATCTCTTTATAAAAGA
730808 AATAACCACG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.44
Consensus pattern (31 bp):
AAGATTTTTATTATCTCTTTATAAAAGAGAC
Found at i:732289 original size:18 final size:18
Alignment explanation
Indices: 732242--732313 Score: 63
Period size: 18 Copynumber: 3.7 Consensus size: 18
732232 GGTTTACGCA
732242 GTCCTTCGGGACACAATG
1 GTCCTTCGGGACACAATG
* * **
732260 GTCTTTCAGGACGTAATG
1 GTCCTTCGGGACACAATG
732278 GTCCTTCGGGACATTTCATAGTG
1 GTCCTTCGGGACA---CA-A-TG
732301 GTCCTTCGGGACA
1 GTCCTTCGGGACA
732314 AATTTCATAG
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
18 24 0.59
21 1 0.02
22 1 0.02
23 15 0.37
ACGTcount: A:0.19, C:0.24, G:0.28, T:0.29
Consensus pattern (18 bp):
GTCCTTCGGGACACAATG
Found at i:732306 original size:23 final size:24
Alignment explanation
Indices: 732276--732323 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
732266 CAGGACGTAA
732276 TGGTCCTTCGGGAC-ATTTCATAG
1 TGGTCCTTCGGGACAATTTCATAG
732299 TGGTCCTTCGGGACAAATTTCATAG
1 TGGTCCTTCGGGAC-AATTTCATAG
732324 CCCATAGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 14 0.61
25 9 0.39
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (24 bp):
TGGTCCTTCGGGACAATTTCATAG
Found at i:736066 original size:135 final size:136
Alignment explanation
Indices: 735838--736700 Score: 1175
Period size: 135 Copynumber: 6.4 Consensus size: 136
735828 AGATTCTCTA
*
735838 AGATTCTTC-TTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTTGATTCAA
1 AGATTCTTCTTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTCGATTCAA
* * * *
735902 TCTTCCCTGAAGAACAGCGAAGTAGATCAAATTTTTTCTTGAGTCTGATCTCCCCTAAAGAGTAG
66 TCTTCCCTGAAGAGCAGCGAAGTGGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAG
*
735967 CGGGGC
131 CGGAGC
* * *
735973 AGATTCTTCTTTTTTTCAGATTTGGTCTTCCTGAAAAGCAACGAAGCAAATCAAGTTCGATT-AA
1 AGATTCTTCTTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTCGATTCAA
* * * *
736037 TCTTCCCTGAAGAGCATCGAAGTGGATCAAAATTTTTCTTGAGCCCGATCTCCCCTAAAGAGTAG
66 TCTTCCCTGAAGAGCAGCGAAGTGGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAG
736102 CGGAGC
131 CGGAGC
* * * * *
736108 AAATTCTT-ATTCTTTAAGATTTGGTCTTCCTGAAGAGTAGCGAAGCAAATCAAGTTTGATTCAA
1 AGATTCTTCTTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTCGATTCAA
* * * * * * *
736172 TATTCCTTGAAGAGCAGCGAAGTGGATCAAAATTGTTCTCGAGTCAGGTCTCTCCTATAGAGTAG
66 TCTTCCCTGAAGAGCAGCGAAGTGGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAG
*
736237 CAGAGC
131 CGGAGC
* * *
736243 ATATTCTT-ATTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTTGATTCAA
1 AGATTCTTCTTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTCGATTCAA
* * * *
736307 TCTTCCTTGAAGAGCAGCGAAGTAGATCAAAATTTTTCTCGAGTCTGATCTCCCGTAAAGAGTAT
66 TCTTCCCTGAAGAGCAGCGAAGTGGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAG
736372 CGGAGC
131 CGGAGC
* * * * * * *
736378 AGATTATTC-TTCTCTCAGATTTGGTCTACATG-AGTAGTAACGAAGCAAATTAAGTTCGATTCA
1 AGATTCTTCTTTCTTTCAGATTTGGTCTTCCTGAAG-AGCAGCGAAGCAAATCAAGTTCGATTCA
* ** * *
736441 ATCTTCCCTGAAGAACAATGAAGTGGATCAAAACTTTTCTTGAGTCTGATCTCCCCTAAAGAGTA
65 ATCTTCCCTGAAGAGCAGCGAAGTGGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTA
736506 GCGGAGC
130 GCGGAGC
* *
736513 AGATTCTTC-TTCTTTTAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATTAAGTTCGATTCAA
1 AGATTCTTCTTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTCGATTCAA
* * *
736577 TCTTCCCTGAAGAGTAGCAAAGTGGATCAAAATTTTTCTCGAGTCTGATCTCCTCTAAAGAGTAG
66 TCTTCCCTGAAGAGCAGCGAAGTGGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAG
736642 CGGAGC
131 CGGAGC
* * * *
736648 AGAGTCTTC-TTCTTTTAGATTTGGTCTTCCTGAATAGCAGCGAAACAAATCAA
1 AGATTCTTCTTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAA
736701 CCTCAATTTA
Statistics
Matches: 643, Mismatches: 80, Indels: 10
0.88 0.11 0.01
Matches are distributed among these distances:
134 48 0.07
135 545 0.85
136 50 0.08
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (136 bp):
AGATTCTTCTTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTCGATTCAA
TCTTCCCTGAAGAGCAGCGAAGTGGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAG
CGGAGC
Found at i:736602 original size:405 final size:405
Alignment explanation
Indices: 735838--736700 Score: 1309
Period size: 405 Copynumber: 2.1 Consensus size: 405
735828 AGATTCTCTA
735838 AGATTCTTCTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTTGATTCAAT
1 AGATTCTTCTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTTGATTCAAT
* *
735903 CTTCCCTGAAGAACAGCGAAGTAGATCAAATTTTTTCTTGAGTCTGATCTCCCCTAAAGAGTAGC
66 CTTCCCTGAAGAACAGCGAAGTAGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAGC
* * * * * *
735968 GGGGCAGATTCTTCTTTTTTTCAGATTTGGTCTTCCTGAAAAGCAACGAAGCAAATCAAGTTCGA
131 GGAGCAGATTATTCTTTCTCTCAGATTTGGTCTACATGAAAAGCAACGAAGCAAATCAAGTTCGA
* *
736033 TTAATCTTCCCTGAAGAGCATCGAAGTGGATCAAAATTTTTCTTGAGCCCGATCTCCCCTAAAGA
196 TTAATCTTCCCTGAAGAACATCGAAGTGGATCAAAACTTTTCTTGAGCCCGATCTCCCCTAAAGA
*
736098 GTAGCGGAGCAAATTCTTATTCTTTAAGATTTGGTCTTCCTGAAGAGTAGCGAAGCAAATCAAGT
261 GTAGCGGAGCAAATTCTTATTCTTTAAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGT
* * * *
736163 TTGATTCAATATTCCTTGAAGAGCAGCGAAGTGGATCAAAATTGTTCTCGAGTCAGGTCT-CTCC
326 TCGATTCAATATTCCCTGAAGAGCAGCAAAGTGGATCAAAATTGTTCTCGAGTCAGATCTCCT-C
*
736227 TATAGAGTAGCAGAGC
390 TAAAGAGTAGCAGAGC
* *
736243 ATATTCTTATTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTTGATTCAAT
1 AGATTCTTCTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTTGATTCAAT
* * * *
736308 CTTCCTTGAAGAGCAGCGAAGTAGATCAAAATTTTTCTCGAGTCTGATCTCCCGTAAAGAGTATC
66 CTTCCCTGAAGAACAGCGAAGTAGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAGC
** * *
736373 GGAGCAGATTATTC-TTCTCTCAGATTTGGTCTACATGAGTAGTAACGAAGCAAATTAAGTTCGA
131 GGAGCAGATTATTCTTTCTCTCAGATTTGGTCTACATGAAAAGCAACGAAGCAAATCAAGTTCGA
* *
736437 TTCAATCTTCCCTGAAGAACAAT-GAAGTGGATCAAAACTTTTCTTGAGTCTGATCTCCCCTAAA
196 TT-AATCTTCCCTGAAGAAC-ATCGAAGTGGATCAAAACTTTTCTTGAGCCCGATCTCCCCTAAA
* * * *
736501 GAGTAGCGGAGCAGATTCTTCTTCTTTTAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATTAA
259 GAGTAGCGGAGCAAATTCTTATTCTTTAAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAA
* * * *
736566 GTTCGATTCAATCTTCCCTGAAGAGTAGCAAAGTGGATCAAAATTTTTCTCGAGTCTGATCTCCT
324 GTTCGATTCAATATTCCCTGAAGAGCAGCAAAGTGGATCAAAATTGTTCTCGAGTCAGATCTCCT
*
736631 CTAAAGAGTAGCGGAGC
389 CTAAAGAGTAGCAGAGC
* * * *
736648 AGAGTCTTCTTCTTTTAGATTTGGTCTTCCTGAATAGCAGCGAAACAAATCAA
1 AGATTCTTCTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAA
736701 CCTCAATTTA
Statistics
Matches: 412, Mismatches: 43, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
404 44 0.11
405 364 0.88
406 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (405 bp):
AGATTCTTCTTCTTTCAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGTTTGATTCAAT
CTTCCCTGAAGAACAGCGAAGTAGATCAAAATTTTTCTCGAGTCTGATCTCCCCTAAAGAGTAGC
GGAGCAGATTATTCTTTCTCTCAGATTTGGTCTACATGAAAAGCAACGAAGCAAATCAAGTTCGA
TTAATCTTCCCTGAAGAACATCGAAGTGGATCAAAACTTTTCTTGAGCCCGATCTCCCCTAAAGA
GTAGCGGAGCAAATTCTTATTCTTTAAGATTTGGTCTTCCTGAAGAGCAGCGAAGCAAATCAAGT
TCGATTCAATATTCCCTGAAGAGCAGCAAAGTGGATCAAAATTGTTCTCGAGTCAGATCTCCTCT
AAAGAGTAGCAGAGC
Found at i:736937 original size:6 final size:6
Alignment explanation
Indices: 736928--737007 Score: 94
Period size: 6 Copynumber: 13.7 Consensus size: 6
736918 ATTATAATTA
* * * *
736928 ATTTTT ATTTTT ATTTTT AGTTTC A-TTTT ACTTTT ACTTTT ATTTATT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT-TT
736976 -TTTTT ATTTTT ATTTTT ATTTTT A-TTTT ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT
737008 ACATTGCAGG
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
5 11 0.17
6 53 0.80
7 2 0.03
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:737494 original size:23 final size:23
Alignment explanation
Indices: 737464--737509 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
737454 GAGAGAAAGC
737464 TAGAAAAAAAG-AACAAAAAAAA
1 TAGAAAAAAAGAAACAAAAAAAA
*
737486 TAGAGAAAAAAGAAAGAAAAAAAA
1 TAGA-AAAAAAGAAACAAAAAAAA
737510 GAAAAGCCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.19
23 7 0.33
24 10 0.48
ACGTcount: A:0.80, C:0.02, G:0.13, T:0.04
Consensus pattern (23 bp):
TAGAAAAAAAGAAACAAAAAAAA
Found at i:737513 original size:13 final size:12
Alignment explanation
Indices: 737467--737509 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 12
737457 AGAAAGCTAG
737467 AAAAAAAGAACAA
1 AAAAAAAGAA-AA
737480 AAAAAATAGAGAAA
1 AAAAAA-AGA-AAA
*
737494 AAAGAAAGAAAA
1 AAAAAAAGAAAA
737506 AAAA
1 AAAA
737510 GAAAAGCCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 6 0.23
13 9 0.35
14 10 0.38
15 1 0.04
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:743846 original size:2 final size:2
Alignment explanation
Indices: 743833--743864 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
743823 TATCTTTGTG
*
743833 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
743865 TTAAAGTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:745095 original size:2 final size:2
Alignment explanation
Indices: 745088--745119 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
745078 GACGAACCAT
745088 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
745120 TATATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:755300 original size:152 final size:158
Alignment explanation
Indices: 755129--755442 Score: 568
Period size: 152 Copynumber: 2.0 Consensus size: 158
755119 AAAATTAATA
755129 TAAATTAGATGAAAAAAAGGTACACAGGAATTTGGTAAGTTATTATATTGGTGTATTATTTTTTT
1 TAAATTAGATGAAAAAAAGGTACACAGGAATTTGGTAAGTTATTATATTGGTGTATTATTTTTTT
755194 AAAGTGATGTATTTGGTAAGC-TTATTATTATTATTA-TTTATTATA-GTAATGG-TATA-TACA
66 AAAGTGATGTATTTGGTAAGCATTATTATTATTATTATTTTATTATAGGTAATGGTTATATTACA
755254 TCTTCCG-TTTTGCTTGTTGTATATCCT
131 TCTTCCGTTTTTGCTTGTTGTATATCCT
755281 TAAATTAGATGAAAAAAAGGTACACAGGAATTTGGTAAGTTATTATATTGGTGTATTATTTTTTT
1 TAAATTAGATGAAAAAAAGGTACACAGGAATTTGGTAAGTTATTATATTGGTGTATTATTTTTTT
755346 AAAGTGATGTATTTGGTAAGCTATTATTATTATTATTATTTTATTATAGTGTAATGGTTATATTA
66 AAAGTGATGTATTTGGTAAGC-ATTATTATTATTATTATTTTATTATAG-GTAATGGTTATATTA
755411 CATCTTCCGTTTTTGCTTGTTGTATATCCT
129 CATCTTCCGTTTTTGCTTGTTGTATATCCT
755441 TA
1 TA
755443 GGCAAATTAG
Statistics
Matches: 154, Mismatches: 0, Indels: 8
0.95 0.00 0.05
Matches are distributed among these distances:
152 86 0.56
154 15 0.10
155 9 0.06
157 7 0.05
158 4 0.03
159 11 0.07
160 22 0.14
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (158 bp):
TAAATTAGATGAAAAAAAGGTACACAGGAATTTGGTAAGTTATTATATTGGTGTATTATTTTTTT
AAAGTGATGTATTTGGTAAGCATTATTATTATTATTATTTTATTATAGGTAATGGTTATATTACA
TCTTCCGTTTTTGCTTGTTGTATATCCT
Found at i:755571 original size:16 final size:16
Alignment explanation
Indices: 755550--755580 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
755540 GATGATTACG
*
755550 GATGAATATCGTTAAT
1 GATGAATATCATTAAT
755566 GATGAATATCATTAA
1 GATGAATATCATTAA
755581 ATTGATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35
Consensus pattern (16 bp):
GATGAATATCATTAAT
Found at i:758172 original size:14 final size:14
Alignment explanation
Indices: 758153--758180 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
758143 ATAATACTAT
758153 TTGAATTTTAGAAC
1 TTGAATTTTAGAAC
758167 TTGAATTTTAGAAC
1 TTGAATTTTAGAAC
758181 GAAACATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
TTGAATTTTAGAAC
Found at i:760916 original size:20 final size:20
Alignment explanation
Indices: 760891--760944 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
760881 TATTCCATGG
760891 TAATCTTACATTCCTACTGA
1 TAATCTTACATTCCTACTGA
*
760911 TAATCTTACATTCCTACTGG
1 TAATCTTACATTCCTACTGA
760931 TAATCTTACATTCC
1 TAATCTTACATTCC
760945 GTGAACCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.28, C:0.26, G:0.06, T:0.41
Consensus pattern (20 bp):
TAATCTTACATTCCTACTGA
Found at i:762832 original size:60 final size:61
Alignment explanation
Indices: 762759--762899 Score: 257
Period size: 60 Copynumber: 2.3 Consensus size: 61
762749 CTAGGTAAGA
*
762759 AACTTTGGAAATCGCTTTCTTAATTTTTAAATATTTCATTTTCTG-AAAATATTAAGTGAT
1 AACTTTGGAAATCGCTTTCTTAATTTTTAAAGATTTCATTTTCTGAAAAATATTAAGTGAT
762819 AACTTTGGAAATCGCTTTCTTAATTTTTAAAGATTTCATTTTCTGAAAAATATTAAGTGAT
1 AACTTTGGAAATCGCTTTCTTAATTTTTAAAGATTTCATTTTCTGAAAAATATTAAGTGAT
*
762880 AACTTTGGAAATCGTTTTCT
1 AACTTTGGAAATCGCTTTCT
762900 CATTTTTTTC
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
60 44 0.56
61 34 0.44
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (61 bp):
AACTTTGGAAATCGCTTTCTTAATTTTTAAAGATTTCATTTTCTGAAAAATATTAAGTGAT
Found at i:763043 original size:42 final size:42
Alignment explanation
Indices: 762945--763048 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
762935 CGAAGGTCTT
* * *
762945 ATAGATGGTCCGAAGGACTT-ATCATCTTGCTCGAAAGACTG
1 ATAGATGGCCCGAAAGACTTAATCATCATGCTCGAAAGACTG
* * * *
762986 ATAGATGACCTGAAAGACTTAATCATCATGCTCGAAAGGCTT
1 ATAGATGGCCCGAAAGACTTAATCATCATGCTCGAAAGACTG
763028 ACT-GATGGCCCGAAAGACTTA
1 A-TAGATGGCCCGAAAGACTTA
763049 CCAATTTTGG
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
41 16 0.31
42 35 0.67
43 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (42 bp):
ATAGATGGCCCGAAAGACTTAATCATCATGCTCGAAAGACTG
Found at i:763251 original size:41 final size:41
Alignment explanation
Indices: 763204--763305 Score: 105
Period size: 42 Copynumber: 2.5 Consensus size: 41
763194 GAAGTCTTAT
* * *
763204 AGATGACATGAAGGACTTATTATCTTGCTCGAAAGACTGAC
1 AGATGACCTGAAGGACTTATTATCATGCTCAAAAGACTGAC
* * * * *
763245 AGATGACCCGAATGATTTAATTATCATGCTCAAAAGGCTTAC
1 AGATGACCTGAAGGACTT-ATTATCATGCTCAAAAGACTGAC
* *
763287 TGATGGCCTGAAGGACTTA
1 AGATGACCTGAAGGACTTA
763306 CCAATTCTGG
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
41 15 0.32
42 32 0.68
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (41 bp):
AGATGACCTGAAGGACTTATTATCATGCTCAAAAGACTGAC
Found at i:763283 original size:257 final size:259
Alignment explanation
Indices: 762819--763689 Score: 1151
Period size: 257 Copynumber: 3.4 Consensus size: 259
762809 ATTAAGTGAT
** * * * * *
762819 AACTTTGGAAATCGCTTTCTTAATTTTTAAAGATTTCATTTTCTGAAAAATATTAAGTGA-TAAC
1 AACTTTGGAAATCATTTTCTTAATTTTCAAAAATTTCATTTTCTG-AAAATACTAAATGAGAAAC
* ** *
762883 TTTGGAAATCGTTTTCTCATTTTTTTCGAAAATCATGTGAAAACATCTTGCCCGAAGGTCTTATA
65 TTTGAAAATCACTTTCTCATTTTTTT-AAAAATCATGTGAAAACATCTTGCCCGAAGGTCTTATA
* * * *
762948 GATGGTC-CGAAGGACTTATCATCTTGCTCGAAAGACTGATAGATGACCTGAAAGACTTAATCAT
129 GAT-GACACGAAGGACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAAGATTTAATCAT
*
763012 CATGCTCGAAAGGCTTACTGATGGCCCGAAAGACTTACCAATTTTGGAAATAGTCTACTGAGTAA
193 CATGCTCAAAAGGCTTACTGATGGCCCGAAAGACTTACCAATTTTGGAAATAGTCTACTGAGTAA
763077 GA
258 GA
* * * * *
763079 AACTTTGGAAATTATTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACACTAAATTAGAAAGT
1 AACTTTGGAAATCATTTTCTTAATTTTCAAAAATTTCATTTTCTGAAAATACTAAATGAGAAACT
763144 TTGAAAATCACTTTCTCATTTTTTT-AAAATCATGTGAAAACATCTTGCCCGAA-GTCTTATAGA
66 TTGAAAATCACTTTCTCATTTTTTTAAAAATCATGTGAAAACATCTTGCCCGAAGGTCTTATAGA
* * * *
763207 TGACATGAAGGACTTATTATCTTGCTCGAAAGACTGACAGATGACCCGAATGATTTAATTATCAT
131 TGACACGAAGGACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAAGATTTAATCATCAT
* * * * * *
763272 GCTCAAAAGGCTTACTGATGGCCTGAAGGACTTACCAATTCTGGGAACAGACTACTGAGTAAGA
196 GCTCAAAAGGCTTACTGATGGCCCGAAAGACTTACCAATTTTGGAAATAGTCTACTGAGTAAGA
* * *
763336 AACTTTGGAAATCGTTTTCTTACTTTTCAAAAATTTCATTTTCTAAAAATACTAAATGAGAAACT
1 AACTTTGGAAATCATTTTCTTAATTTTCAAAAATTTCATTTTCTGAAAATACTAAATGAGAAACT
* * * *
763401 TTGAAAATCACTTTCTCAATTTTTTTAAAAATCATATGAAAACATCCTGCCCTAAGGTCTTGTAG
66 TTGAAAATCACTTTCTC-ATTTTTTTAAAAATCATGTGAAAACATCTTGCCCGAAGGTCTTATAG
* * * * * *
763466 ATGGCACAAAGGGCTTATCATCTTGCTCGAATGACTGACAGATGACTCGAAGGATTTAATCATCA
130 ATGACACGAAGGACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAAGATTTAATCATCA
* * * * * * *
763531 TGCTCGAAAA-GCTTACCGATAGCCCAAAAGACTTACCAATTTTGAAAATTAGTTTACTAAGTAT
195 TGCTC-AAAAGGCTTACTGATGGCCCGAAAGACTTACCAATTTTGGAAA-TAGTCTACTGAGTAA
763595 GA
258 GA
*
763597 AACTTTGGAAATCATTTTCTTAATTTTCAAAAATTTCATTTTCTGAAAATACTAAATGAGATACT
1 AACTTTGGAAATCATTTTCTTAATTTTCAAAAATTTCATTTTCTGAAAATACTAAATGAGAAACT
* * *
763662 TTGGAAATCACTTGCT-AATTTTTTAAAA
66 TTGAAAATCACTTTCTCATTTTTTTAAAA
763690 CAACTTAATG
Statistics
Matches: 535, Mismatches: 69, Indels: 15
0.86 0.11 0.02
Matches are distributed among these distances:
256 2 0.00
257 197 0.37
258 36 0.07
259 46 0.09
260 163 0.30
261 91 0.17
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (259 bp):
AACTTTGGAAATCATTTTCTTAATTTTCAAAAATTTCATTTTCTGAAAATACTAAATGAGAAACT
TTGAAAATCACTTTCTCATTTTTTTAAAAATCATGTGAAAACATCTTGCCCGAAGGTCTTATAGA
TGACACGAAGGACTTATCATCTTGCTCGAAAGACTGACAGATGACCCGAAAGATTTAATCATCAT
GCTCAAAAGGCTTACTGATGGCCCGAAAGACTTACCAATTTTGGAAATAGTCTACTGAGTAAGA
Found at i:770858 original size:89 final size:89
Alignment explanation
Indices: 770760--770927 Score: 291
Period size: 89 Copynumber: 1.9 Consensus size: 89
770750 AGAACATCAT
* *
770760 AAAAATAAAAATAACAATCGCATATCAAAGAGGACTAAAATGGAATTTAACAAAACTAGAAGCAC
1 AAAAATAAAAATAACAATCGCATATAAAAGAGGACTAAAATGGAATTTAACAAAACTACAAGCAC
*
770825 TAGAATTAGAGTAAAGTGCTTCAG
66 TAAAATTAGAGTAAAGTGCTTCAG
*
770849 AAAAATAAAAATAACAATTGCATATAAAAGAGGACTAAAATGGAATTTAACAAAACTACAAGCAC
1 AAAAATAAAAATAACAATCGCATATAAAAGAGGACTAAAATGGAATTTAACAAAACTACAAGCAC
*
770914 TAAAATTAGCGTAA
66 TAAAATTAGAGTAA
770928 TCCCCAAACA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.54, C:0.12, G:0.14, T:0.20
Consensus pattern (89 bp):
AAAAATAAAAATAACAATCGCATATAAAAGAGGACTAAAATGGAATTTAACAAAACTACAAGCAC
TAAAATTAGAGTAAAGTGCTTCAG
Found at i:772292 original size:18 final size:19
Alignment explanation
Indices: 772257--772293 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
772247 CACAGAATGT
772257 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
772277 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
772294 GTTACTGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:788283 original size:37 final size:37
Alignment explanation
Indices: 788189--788293 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
788179 TCTTTTCGTC
*
788189 CTACTAGGATTCAAACTCCTAAAAATATGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * * *
788226 TTGCTAGGATTCAAATTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
** * *
788263 CTACTATTATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
788294 CCATAAGCAT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.32
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:788841 original size:30 final size:31
Alignment explanation
Indices: 788794--788865 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 31
788784 TATTATTATA
*
788794 TATATATA-TTATATTACTAT-TTTTTTTATC
1 TATATTTACTTATATTACTATGTTTTTTTA-C
*
788824 TATGTTTACTTAT-TTACTATGTTTTTTTAC
1 TATATTTACTTATATTACTATGTTTTTTTAC
*
788854 TATATTTTCTTA
1 TATATTTACTTA
788866 AAGTTATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
30 24 0.67
31 12 0.33
ACGTcount: A:0.25, C:0.08, G:0.03, T:0.64
Consensus pattern (31 bp):
TATATTTACTTATATTACTATGTTTTTTTAC
Found at i:789008 original size:29 final size:30
Alignment explanation
Indices: 788959--789030 Score: 69
Period size: 30 Copynumber: 2.3 Consensus size: 30
788949 TTATTTTTCA
788959 TTTATTTATTATTATTAATAC-TATTTAGTA-T
1 TTTA-TTA-TATTATTAATACATATTTA-TATT
*
788990 TTTATTATATTA-TACATACATTTTTATATT
1 TTTATTATATTATTA-ATACATATTTATATT
789020 TTTATATATAT
1 TTTAT-TATAT
789031 ATTTTTTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
28 2 0.06
29 11 0.31
30 14 0.39
31 9 0.25
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (30 bp):
TTTATTATATTATTAATACATATTTATATT
Found at i:789024 original size:22 final size:21
Alignment explanation
Indices: 788989--789040 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
788979 CTATTTAGTA
788989 TTTTATTATATTATACATACATT
1 TTTTATT-T-TTATACATACATT
* *
789012 TTTATATTTTTATATATATATT
1 TTT-TATTTTTATACATACATT
789034 TTTTATT
1 TTTTATT
789041 AATTTATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 4 0.15
22 14 0.54
23 4 0.15
24 4 0.15
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTATTTTTATACATACATT
Found at i:789040 original size:21 final size:20
Alignment explanation
Indices: 789009--789079 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 20
788999 TTATACATAC
789009 ATTTTTATATTTTTATATATAT
1 ATTTTT-TATTTTTAT-TATAT
789031 ATTTTTTATTAATTTATTTATATT
1 ATTTTTTATT--TTTA-TTATA-T
*
789055 ATTTATTTATTTTCATTATAT
1 ATTT-TTTATTTTTATTATAT
789076 -TTTT
1 ATTTT
789080 AGTTTCTTTG
Statistics
Matches: 43, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
19 1 0.02
20 3 0.07
21 5 0.12
22 11 0.26
23 11 0.26
24 6 0.14
25 6 0.14
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.70
Consensus pattern (20 bp):
ATTTTTTATTTTTATTATAT
Found at i:789049 original size:4 final size:4
Alignment explanation
Indices: 789020--789066 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
789010 TTTTTATATT
* * *
789020 TTTA TATA TATA TTT- TTTA TTAA TTTA TTTA TATTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTT
789067 TCATTATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
3 3 0.08
4 30 0.81
5 4 0.11
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:789073 original size:13 final size:13
Alignment explanation
Indices: 789012--789064 Score: 60
Period size: 12 Copynumber: 4.4 Consensus size: 13
789002 TACATACATT
789012 TTTATATT-TTTA
1 TTTATATTATTTA
*
789024 TATATA-TATTT-
1 TTTATATTATTTA
*
789035 TTTAT-TAATTTA
1 TTTATATTATTTA
789047 TTTATATTATTTA
1 TTTATATTATTTA
789060 TTTAT
1 TTTAT
789065 TTTCATTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
11 9 0.27
12 13 0.39
13 11 0.33
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTATATTATTTA
Found at i:789080 original size:17 final size:17
Alignment explanation
Indices: 789036--789073 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
789026 TATATATTTT
*
789036 TTATTAATTTATTTAT-A
1 TTATTTATTTATTT-TCA
789053 TTATTTATTTATTTTCA
1 TTATTTATTTATTTTCA
789070 TTAT
1 TTAT
789074 ATTTTTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATTTATTTATTTTCA
Found at i:789189 original size:20 final size:19
Alignment explanation
Indices: 789165--789220 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
789155 TATTATCTTC
789165 ATTTATTTTATTTTATTCA
1 ATTTATTTTATTTTATTCA
*
789184 ATTTTATTTT-TTTTCATCCA
1 A-TTTATTTTATTTT-ATTCA
789204 A-TTATTTTATGTTTATT
1 ATTTATTTTAT-TTTATT
789221 ATTATTGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
18 7 0.23
19 8 0.26
20 16 0.52
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (19 bp):
ATTTATTTTATTTTATTCA
Found at i:789692 original size:44 final size:44
Alignment explanation
Indices: 789629--789717 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
789619 GACAAATATG
* * * *
789629 TATATTTATATTAATTATATA-TATTATGTATAAATTGTATAGTT
1 TATATATATATTAATTATATACT-TTATATATAAACTATATAGTT
789673 TATATATATA-TAATATATATACTTTATATATAAACTATATAGTT
1 TATATATATATTAAT-TATATACTTTATATATAAACTATATAGTT
789717 T
1 T
789718 TTTTAAAACC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
43 4 0.10
44 34 0.87
45 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (44 bp):
TATATATATATTAATTATATACTTTATATATAAACTATATAGTT
Found at i:789713 original size:13 final size:13
Alignment explanation
Indices: 789673--789713 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
789663 TTGTATAGTT
789673 TATATATATA-TA
1 TATATATATACTA
*
789685 -ATATATATACTT
1 TATATATATACTA
*
789697 TATATATAAACTA
1 TATATATATACTA
789710 TATA
1 TATA
789714 GTTTTTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
11 9 0.38
12 1 0.04
13 14 0.58
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (13 bp):
TATATATATACTA
Found at i:790258 original size:49 final size:49
Alignment explanation
Indices: 790190--790291 Score: 152
Period size: 49 Copynumber: 2.1 Consensus size: 49
790180 TTTATTTTAT
*
790190 TATATACTATATATAAATTATATAGTTTAT-TAATATAAACTATAAATTA
1 TATATACTATATATAAATTATATAGTTTATATAATATAAA-TATAAAATA
* * *
790239 TATATACTATGTATAAATTATATAGTTTATATAGTTTAAATATAAAATA
1 TATATACTATATATAAATTATATAGTTTATATAATATAAATATAAAATA
790288 TATA
1 TATA
790292 AGTATATTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
49 41 0.85
50 7 0.15
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (49 bp):
TATATACTATATATAAATTATATAGTTTATATAATATAAATATAAAATA
Found at i:790372 original size:17 final size:16
Alignment explanation
Indices: 790344--791021 Score: 147
Period size: 15 Copynumber: 44.4 Consensus size: 16
790334 AGTATATAAG
790344 TATATAATATAAAGTA
1 TATATAATATAAAGTA
790360 TATATACATATAAAG--
1 TATATA-ATATAAAGTA
* *
790375 TGTA-AGTAT---GTA
1 TATATAATATAAAGTA
*
790387 TATAT-ATATAAACTA
1 TATATAATATAAAGTA
*
790402 TA-A-AGTA-AAAGTA
1 TATATAATATAAAGTA
*
790415 TATATATAGATAAAGT-
1 TATATA-ATATAAAGTA
*
790431 T-T-TAGTATAAAGTA
1 TATATAATATAAAGTA
*
790445 TATAT-ACAT--A-TA
1 TATATAATATAAAGTA
790457 TA-ATAATATAAAGTA
1 TATATAATATAAAGTA
*
790472 TA-AGT-ATATTATA-TA
1 TATA-TAATA-TAAAGTA
790487 TATATAATATATAA-T-
1 TATATAATATA-AAGTA
*
790502 TATA-AAGACTAAAGTA
1 TATATAATA-TAAAGTA
**
790518 TATACGCATATATAAG--
1 TATA-TAATATA-AAGTA
790534 TATATAATATAAA--A
1 TATATAATATAAAGTA
790548 TATATAAGTATTAAA-TA
1 TATATAA-TA-TAAAGTA
*
790565 TA-A-AGTATATAAGTA
1 TATATAATATA-AAGTA
790580 T-TA-AATATAAAGTA
1 TATATAATATAAAGTA
790594 TA-AT--TATAAAG-A
1 TATATAATATAAAGTA
*
790606 CTA-A-AGTATATAAG--
1 -TATATAATATA-AAGTA
790620 TATATAATATAAAGTA
1 TATATAATATAAAGTA
790636 TATA-AATATATATA-TA
1 TATATAATATA-A-AGTA
790652 TATATAAAGTATAAGTATGTA
1 TATAT-AA-TATAA--A-GTA
*
790673 TATATATATATAAACTA
1 TATATA-ATATAAAGTA
* *
790690 TA-A-AGTA-AAAGTG
1 TATATAATATAAAGTA
790703 TAAGTATATATATAAAGT-
1 T-A-TATA-ATATAAAGTA
*
790721 T-TA-AGTATAAAGTA
1 TATATAATATAAAGTA
*
790735 TATAT-ACAT--A-TA
1 TATATAATATAAAGTA
*
790747 TA-ATAATATAAAATA
1 TATATAATATAAAGTA
* *
790762 TA-ATTATAT-TA-TA
1 TATATAATATAAAGTA
790775 TATATATATATAAAGTA
1 TATATA-ATATAAAGTA
*
790792 TAATTATAAAGACTAAAGTA
1 T-A-TAT-AATA-TAAAGTA
790812 TATA-AGCATAT-AA-TA
1 TATATA--ATATAAAGTA
*
790827 TAAAT-ATAT-AAGTA
1 TATATAATATAAAGTA
*
790841 T-TA-AATATATA-TA
1 TATATAATATAAAGTA
*
790854 TATATAATATATATGTA
1 TATATAATATA-AAGTA
790871 TATAATAATATAAAGTA
1 TAT-ATAATATAAAGTA
*
790888 TATA-ATTATATAA-TA
1 TATATAATATA-AAGTA
* * *
790903 TAAAGAATCT-AAGTA
1 TATATAATATAAAGTA
790918 TTAAATATAAGTATATAAGTA
1 -T--ATATAA-TATA-AAGTA
790939 T-TA-AATATAAAGTA
1 TATATAATATAAAGTA
*
790953 TATAAGTATATATAAACTA
1 TAT-A-TA-ATATAAAGTA
*
790972 TA-A-ACTATAAAGTA
1 TATATAATATAAAGTA
*
790986 TATAT-ATATATA-TA
1 TATATAATATAAAGTA
*
791000 TATATATATATATA-TA
1 TATATA-ATATAAAGTA
791016 TATATA
1 TATATA
791022 CTTTATATTA
Statistics
Matches: 499, Mismatches: 57, Indels: 212
0.65 0.07 0.28
Matches are distributed among these distances:
10 1 0.00
11 4 0.01
12 21 0.04
13 64 0.13
14 82 0.16
15 121 0.24
16 74 0.15
17 43 0.09
18 30 0.06
19 30 0.06
20 16 0.03
21 13 0.03
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (16 bp):
TATATAATATAAAGTA
Found at i:790407 original size:32 final size:30
Alignment explanation
Indices: 790206--791005 Score: 147
Period size: 32 Copynumber: 25.7 Consensus size: 30
790196 CTATATATAA
* * *
790206 ATTATATAGTTTATTAATATAAACTATAA--
1 ATTATATA-TATATAAATATAAAGTATAAGT
* *
790235 ATTATATATACTAT--GTATAAATTATATAGT
1 ATTATATATA-TATAAATATAAAGTATA-AGT
*
790265 -TTATATAGT-T-TAAATATAAAATATATAAGT
1 ATTATATA-TATATAAATAT-AAA-GTATAAGT
* *
790295 A-TAT-TATATATATATAAAAAGTAT-A--
1 ATTATATATATATAAATATAAAGTATAAGT
* *
790320 ATTATA-A-AGACTAAAGTATATAAGTATATAAT
1 ATTATATATATA-TAAA-TATA-AAGTATA-AGT
* * *
790352 A-TAAAGTATATATACATATAAAGTGTAAGT
1 ATTATA-TATATATAAATATAAAGTATAAGT
*
790382 ATGTATATATATATAAACTATAAAGTAAAAGT
1 AT-TATATATATATAAA-TATAAAGTATAAGT
* **
790414 A-TATATATAGATAAAGT-TTTAGTATAAAGT
1 ATTATATATATATAAA-TATAAAGTAT-AAGT
*
790444 ATATATACATATATAATAATATAAAGTATAAGT
1 AT-TATATATATAT-A-AATATAAAGTATAAGT
*
790477 A-TATTATATATATATAATATATAATTATAAAG-
1 ATTA-TATATATATA-AATATA-AAGTAT-AAGT
* * ***
790509 ACTAAAGTATATACGCATATATAAGTAT-A-T
1 ATTATA-TATATATAAATATA-AAGTATAAGT
* * *
790539 AATATAAAATATATAAGTATTAAA-TATAAAGT
1 ATTAT-ATATATATAAATA-TAAAGTAT-AAGT
*
790571 A-TATA-AGTAT-TAAATATAAAGTATAATT
1 ATTATATA-TATATAAATATAAAGTATAAGT
* * *
790599 ATAAAGACTAAAGTATATAAGTATATAA-TATAAAGT
1 AT---TA-TATA-TATATAAATATA-AAGTAT-AAGT
* * * *
790635 ATATAAATATATATATATATATA-AAGTATAAGT
1 AT-TATATATATATAAATATAAAGTA-TA--AGT
*
790668 ATGTATATATATATATAAACTATAAAGTAAAAGT
1 A--T-TATATATATATAAA-TATAAAGTATAAGT
* * *
790702 GTAAGTATATATATAAAGT-TTAAGTATAAAGT
1 ATTA-TATATATATAAA-TATAAAGTAT-AAGT
* * *
790734 ATATATACATATATAATAATATAAAATATAATT
1 AT-TATATATATAT-A-AATATAAAGTATAAGT
*
790767 A-TATTATATATATATATATAAAGTAT-A--
1 ATTA-TATATATATAAATATAAAGTATAAGT
* *
790794 ATTATA-A-AGACTAAAGTATATAAGCAT-A-T
1 ATTATATATATA-TAAA-TATA-AAGTATAAGT
* * *
790823 AATATAAATATATAAGTATTAAA-TATATA-T
1 ATTATATATATATAAATA-TAAAGTATA-AGT
** *
790853 ATATATAATATATATGTATATAATAATATAAAGT
1 AT-TAT-ATATATATAAATATAA-AGTAT-AAGT
*
790887 A-TATA-AT-TATATAATATAAAGAATCTAAGT
1 ATTATATATATATA-AATATAAAG--TATAAGT
*
790917 ATTAAATATAAGTATATAAGTATTAAA-TATAAAGT
1 ATT--ATAT-A-TATATAAATA-TAAAGTAT-AAGT
*
790952 A-TATAAGTATATATAAACTATAAACTATAAAGT
1 ATTAT-A-TATATATAAA-TATAAAGTAT-AAGT
*
790985 ATATATATATATATATATATA
1 AT-TATATATATATAAATATA
791006 TATATATATA
Statistics
Matches: 574, Mismatches: 94, Indels: 203
0.66 0.11 0.23
Matches are distributed among these distances:
25 5 0.01
26 11 0.02
27 22 0.04
28 31 0.05
29 58 0.10
30 87 0.15
31 64 0.11
32 135 0.24
33 66 0.11
34 36 0.06
35 33 0.06
36 17 0.03
37 9 0.02
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (30 bp):
ATTATATATATATAAATATAAAGTATAAGT
Found at i:790459 original size:55 final size:54
Alignment explanation
Indices: 790331--790473 Score: 134
Period size: 55 Copynumber: 2.6 Consensus size: 54
790321 TTATAAAGAC
* *
790331 TAAAGTATATA-AGTATAT-AATATAAAGTATATATACATATAAAGTGTAAGTA
1 TAAAGTATATATAATATATAAATATAAAGTATATATACAGATAAAGTGTAAGTA
* * * *
790383 TGTATA-TATATATAA-ACTATAAAGTA-AAAGTATATATATAGATAAAGTTTTAGTA
1 --TAAAGTATATATAATA-TATAAA-TATAAAGTATATATACAGATAAAGTGTAAGTA
790438 TAAAGTATATATACATATATAATAATATAAAGTATA
1 TAAAGTATATATA-ATATAT-A-AATATAAAGTATA
790474 AGTATATTAT
Statistics
Matches: 72, Mismatches: 7, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
53 10 0.14
54 15 0.21
55 31 0.43
56 6 0.08
57 10 0.14
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (54 bp):
TAAAGTATATATAATATATAAATATAAAGTATATATACAGATAAAGTGTAAGTA
Found at i:790468 original size:40 final size:38
Alignment explanation
Indices: 790443--791013 Score: 211
Period size: 34 Copynumber: 15.6 Consensus size: 38
790433 TAGTATAAAG
*
790443 TATATATACATAT-ATA-ATAA-TATAAAGTATAAGTA
1 TATATATATATATAATATATAATTATAAAGTATAAGTA
790478 TATTATATATATATAATATATAATTATAAAG-ACTAAAGTA
1 TA-TATATATATATAATATATAATTATAAAGTA-T-AAGTA
*** *
790518 TATACGCATATATAAGTATATAA-TATAAAATATATAAGTA
1 TATATATATATATAA-TATATAATTAT-AAA-GTATAAGTA
* * *
790558 TTAAATATAAAGTATATAAGTAT-TAAATATAAAGTATAATTA
1 -T--ATATATA-TATATAA-TATATAATTATAAAGTATAAGTA
* *
790600 TAAAGACTAAAGTATATAAGTATATAA-TATAAAGTAT-A-TA
1 T--ATA-TATA-TATATAA-TATATAATTATAAAGTATAAGTA
* *
790640 AATATATATATAT-ATATA-AAGTAT-AAGTAT--GTA
1 TATATATATATATAATATATAATTATAAAGTATAAGTA
* *
790673 TATATATATATA-AACTATA-AAGTA-AAAGTGTAAG--
1 TATATATATATATAA-TATATAATTATAAAGTATAAGTA
* *
790707 TATATATATA-A-AGT-T-TAAGTATAAAGTAT-A-TA
1 TATATATATATATAATATATAATTATAAAGTATAAGTA
* * * *
790739 TACATATATA-ATAATATA-AAATAT-AATTAT-ATTA
1 TATATATATATATAATATATAATTATAAAGTATAAGTA
790773 TATATATATATATAA-AGTATAATTATAAAG-ACTAAAGTA
1 TATATATATATATAATA-TATAATTATAAAGTA-T-AAGTA
**
790812 TATA-A-GCATATAATATA-AA-TATATAAGTATTAA--A
1 TATATATATATATAATATATAATTATA-AAGTA-TAAGTA
* *
790846 TATATATATATATAATATATATGTATATAATAATATAAAGTA
1 TATATATATATATAATATATA-AT-TATAA-AGTAT-AAGTA
** *
790888 TATA-AT-TATATAATATA-AAGAATCTAAGTATTAA--A
1 TATATATATATATAATATATAATTAT-AAAGTA-TAAGTA
* *
790923 TATA-AGTATATA-AGTAT-TAAATATAAAGTAT-A-TA
1 TATATA-TATATATAATATATAATTATAAAGTATAAGTA
* *
790957 -AGTATATATA-A-ACTATA-AACTATAAAGTATATA-TA
1 TA-TATATATATATAATATATAATTATAAAGTATA-AGTA
790992 TATATATATATATATATATATA
1 TATATATATATATA-ATATATA
791014 TATATATACT
Statistics
Matches: 423, Mismatches: 45, Indels: 132
0.70 0.08 0.22
Matches are distributed among these distances:
31 7 0.02
32 17 0.04
33 51 0.12
34 62 0.15
35 37 0.09
36 50 0.12
37 32 0.08
38 15 0.04
39 32 0.08
40 44 0.10
41 10 0.02
42 39 0.09
43 13 0.03
44 14 0.03
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (38 bp):
TATATATATATATAATATATAATTATAAAGTATAAGTA
Found at i:790486 original size:13 final size:12
Alignment explanation
Indices: 790444--790905 Score: 74
Period size: 13 Copynumber: 37.1 Consensus size: 12
790434 AGTATAAAGT
790444 ATATATACATAT-
1 ATATATA-ATATA
790456 ATA-ATAATATA
1 ATATATAATATA
790467 A-AGTATAAGTATA
1 ATA-TATAA-TATA
*
790480 TTATATATATATA
1 ATATATA-ATATA
790493 ATATATAATTATA
1 ATATATAA-TATA
*
790506 A-AGACTAA-AGT-
1 ATATA-TAATA-TA
*
790517 ATATACGCATATATA
1 ATATA--TA-ATATA
790532 AGTATATAATATA
1 A-TATATAATATA
790545 A-A-AT-ATATA
1 ATATATAATATA
790554 AGTAT-TAAATATAA
1 A-TATAT-AATAT-A
790568 AGTATATAAGTATTA
1 A-TATATAA-TA-TA
790583 A-ATATAAAGTATA
1 ATATAT-AA-TATA
*
790596 AT-TATAA-AGA
1 ATATATAATATA
* *
790606 CTAAAGT-ATATA
1 ATATA-TAATATA
790618 AGTATATAATATA
1 A-TATATAATATA
790631 A-AGTAT-ATA-A
1 ATA-TATAATATA
790641 ATATAT-ATAT-
1 ATATATAATATA
790651 ATATATAAAGTATA
1 ATATAT-AA-TATA
*
790665 AGTATGT-ATATA
1 A-TATATAATATA
790677 TATATATAAACTATA
1 -ATATAT-AA-TATA
* *
790692 A-AGTAAAAGTGTA
1 ATA-TATAA-TATA
790705 AGTATAT-ATATA
1 A-TATATAATATA
*
790717 A-AGTTTAAGTATA
1 ATA-TATAA-TATA
790730 A-AGTAT-ATATA
1 ATA-TATAATATA
790741 CATATAT-A-ATA
1 -ATATATAATATA
*
790752 ATATAAAATATA
1 ATATATAATATA
*
790764 AT-TATATTAT-
1 ATATATAATATA
790774 ATATATATATATA
1 ATATATA-ATATA
790787 A-AGTATAATTATAA
1 ATA-TATAA-TAT-A
* *
790801 AGACTAAAGTATATA
1 ATA-TATA--ATATA
*
790816 AGCATATAATATAA
1 A-TATATAATAT-A
790830 ATATATAAGTATTA
1 ATATATAA-TA-TA
790844 A-ATAT-ATAT-
1 ATATATAATATA
790853 ATATATAATAT-
1 ATATATAATATA
*
790864 ATATGTATATAATA
1 ATATATA-AT-ATA
*
790878 ATATAAAGTATATA
1 ATATATA--ATATA
790892 ATTATATAATATA
1 A-TATATAATATA
790905 A
1 A
790906 AGAATCTAAG
Statistics
Matches: 342, Mismatches: 35, Indels: 145
0.66 0.07 0.28
Matches are distributed among these distances:
9 7 0.02
10 37 0.11
11 48 0.14
12 55 0.16
13 109 0.32
14 42 0.12
15 34 0.10
16 9 0.03
17 1 0.00
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.38
Consensus pattern (12 bp):
ATATATAATATA
Found at i:790625 original size:2 final size:2
Alignment explanation
Indices: 790620--791602 Score: 146
Period size: 2 Copynumber: 492.0 Consensus size: 2
790610 AGTATATAAG
* * *
790620 TA TA TA -A TA TA AA GTA TA TA AA TA TA TA TA TA TA TA TA AA GTA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * * * *
790663 TA -A GTA TG TA TA TA TA TA TA TA AA CTA TA AA GTA -A AA GTG TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA
* * * *
790705 -A GTA TA TA TA TA AA GTT TA -A GTA TA AA GTA TA TA TA CA TA TA
1 TA -TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA
*
790747 TA -A TA -A TA TA -A AA TA TA -A T- TA TA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
790783 TA TA AA GTA TA -A T- TA TA AA GA CTA AA GTA TA TA -A GCA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA -TA TA -TA TA TA TA -TA TA TA
* *
790824 -A TA TA AA TA TA TA -A GTA T- TA AA TA TA TA TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
790863 TA TA TG TA TA TA -A TA -A TA TA AA GTA TA TA -A T- TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * * *
790901 TA TA AA GA -A TC TA -A GTA T- TA AA TA TA -A GTA TA TA -A GTA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA -TA
* * * *
790939 T- TA AA TA TA AA GTA TA TA -A GTA TA TA TA AA CTA TA AA CTA TA
1 TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA -TA TA TA -TA TA
* *
790981 AA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CTT
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * * * * *
791025 TA TA T- TA TA TA TA T- TT TA GTC TT TA TA -A T- TA TA CTC TC TC
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA
* * *
791065 TC TC TA TA TA TA -A TA TA CT- TA TA CTT TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA
* * * * * *
791106 TA CTT TA TA CTA -A AA CTT TA TA TA TA TA TA CA CA TA TA TA TG
1 TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
791148 T- TT TA TA GTT TA TA TA TA TA CT- TA TA TA CTT TA TA T- TA T-
1 TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA
* * *
791187 TA TA TA CA TG TA TA TA TA TA CT- TA TA CTT TA TA T- TA TA TA CT-
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA -TA
* * * *
791229 TA TA TA CTT TA TA T- TA T- TA TA TA CA TA TA TA CA CTT TA TA CTA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA
* * * * * * * * *
791272 -A AA CTT TA TA TA TA TA CA CA CA CA CTT TT TA GTT TA TA TA CT-
1 TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA -TA
* * *
791314 TA TA TA TA TA TA TA TA TA CTT TA TA TG TA TA TA TA T- TT TA TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
791356 TA CT- TA TA TA CTT TA TA T- TA TA TA CT- TA TA TA CTT TA GTC TT
1 TA -TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA -TA TA -TA TA
* ** *
791398 TA TA -A T- TA TA CTT TA TA TA TA TA TA TA TA CC T- TA TA GTT TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
* * * * *
791439 TA TA TA TA T- TA AA TA TA CTT TA TA GTT TA CA CTT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA
* * * * * * *
791481 TA TA TT TA TA CT- TA TA CTT TT TT TA TA TA TG TA TA TT TA AA TA
1 TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
791524 -A GTG TA TG TA TA AA TA TA TA TA TA TA CT- TA TA TT TA TA TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
791566 -A CTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
791603 ATTTTTTTAA
Statistics
Matches: 709, Mismatches: 149, Indels: 246
0.64 0.13 0.22
Matches are distributed among these distances:
1 62 0.09
2 592 0.83
3 55 0.08
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (2 bp):
TA
Found at i:790744 original size:290 final size:290
Alignment explanation
Indices: 790275--790999 Score: 853
Period size: 290 Copynumber: 2.5 Consensus size: 290
790265 TTATATAGTT
* * *
790275 TAAATATAAAATATATAAGTATATTATATATATATAAAAAGTATAATTATA-AAGACTAAAGTAT
1 TAAATATATAATATATAAGTATA-TA-ATA-ATATAAAGA-TATAATTATATAAGA-TAAAGAAT
* *
790339 ATAAGTATATAATATAAAG----T--A-TATATA-CATATAAAGTGTAAGTATG--TATATATAT
61 ATAAGTATATAATATAAAGTATATAAAGTATATATAATATAAAGTATAAGTATGTATATATATAT
*
790394 ATAAACTATAAAGTAAAAGTATATATATAGATAAAGTTTTAGTATAAAGTATATATACATATATA
126 ATAAACTATAAAGTAAAAGTATATATATAGATAAAGTTTAAGTATAAAGTATATATACATATATA
*
790459 ATAATATAAAGTATAAGTATATTATATATATATA-AT-A-TATAATTATAAAGACTAAAGTATAT
191 ATAATATAAAATATAAGTATATTATATATATATATATAAGTATAATTATAAAGACTAAAGTATAT
* *
790521 ACGCATATATAAGTATATAATATA-AAATATATAAGTAT-
256 AAGC--ATATAA-TATA-AATATATAAATAT-TAAATATA
*
790559 TAAATATA-AAGTATATAAGTAT-T-A-AATATAAAG-TATAATTATA-AAGACTAAAGTATATA
1 TAAATATATAA-TATATAAGTATATAATAATATAAAGATATAATTATATAAGA-TAAAGAATATA
*
790618 AGTATATAATATAAAGTATATAAATATATATATATATATAAAGTATAAGTATGTATATATATATA
64 AGTATATAATATAAAGTATATAAA-GTATATATA-ATATAAAGTATAAGTATGTATATATATATA
* *
790683 TAAACTATAAAGTAAAAGTGTAAGTATATATATAAAGTTTAAGTATAAAGTATATATACATATAT
127 TAAACTATAAAGTAAAAGTAT-A-TATATAGATAAAGTTTAAGTATAAAGTATATATACATATAT
*
790748 AATAATATAAAATATAATTATATTATATATATATATATAAAGTATAATTATAAAGACTAAAGTAT
190 AATAATATAAAATATAAGTATATTATATATATATATAT-AAGTATAATTATAAAGACTAAAGTAT
*
790813 ATAAGCATATAATATAAATATATAAGTATTAAATATA
254 ATAAGCATATAATATAAATATATAAATATTAAATATA
* * * *
790850 TATATATATAATATATATGTATATAATAATATAAAGTATATAATTATATAATATAAAGAATCTAA
1 TAAATATATAATATATAAGTATATAATAATATAAAG-ATATAATTATATAAGATAAAGAATATAA
* *
790915 GTAT-TAA-ATATAAGTATAT-AAGTAT-TA-AATATAAAGTAT-A-TAAGTATATATAAACTAT
65 GTATATAATATA-AAGTATATAAAGTATATATAATATAAAGTATAAGTATGTATATATATA-TAT
*
790973 AAACTATAAAGTATATA-TATATATATA
128 AAACTATAAAGTA-AAAGTATATATATA
791000 TATATATATA
Statistics
Matches: 389, Mismatches: 21, Indels: 59
0.83 0.04 0.13
Matches are distributed among these distances:
276 42 0.11
278 7 0.02
279 1 0.00
280 2 0.01
282 2 0.01
283 2 0.01
284 25 0.06
286 17 0.04
287 6 0.02
288 43 0.11
289 20 0.05
290 97 0.25
291 29 0.07
292 11 0.03
293 5 0.01
294 42 0.11
295 11 0.03
296 24 0.06
297 3 0.01
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.37
Consensus pattern (290 bp):
TAAATATATAATATATAAGTATATAATAATATAAAGATATAATTATATAAGATAAAGAATATAAG
TATATAATATAAAGTATATAAAGTATATATAATATAAAGTATAAGTATGTATATATATATATAAA
CTATAAAGTAAAAGTATATATATAGATAAAGTTTAAGTATAAAGTATATATACATATATAATAAT
ATAAAATATAAGTATATTATATATATATATATAAGTATAATTATAAAGACTAAAGTATATAAGCA
TATAATATAAATATATAAATATTAAATATA
Found at i:790903 original size:22 final size:22
Alignment explanation
Indices: 790200--791019 Score: 157
Period size: 22 Copynumber: 36.2 Consensus size: 22
790190 TATATACTAT
* *
790200 ATATAAATTATATAGTT-TATTA
1 ATATAAAGTATATAATTATA-TA
*
790222 ATATAAACTATA-AATTATAT-
1 ATATAAAGTATATAATTATATA
*
790242 ATACT-ATGTATA-AATTATATA
1 ATA-TAAAGTATATAATTATATA
* * * *
790263 GTTTATATAGT-T-TAAATATAAA
1 --ATATAAAGTATATAATTATATA
*
790285 ATATATAAGTATATTA-TATAT-
1 ATATA-AAGTATATAATTATATA
*
790306 ATATAAA-AAGTATAATTATA-A
1 ATATAAAGTA-TATAATTATATA
* *
790327 AGACTAAAGTATATAAGTATATA
1 ATA-TAAAGTATATAATTATATA
*
790350 ATATAAAGTATAT-ATACATATA
1 ATATAAAGTATATAAT-TATATA
* *
790372 A-AGTGTAAGTATGTATATATATATAA
1 ATA-T-AAAGTATATA-AT-TATAT-A
790398 ACTATAAAGTA-A-AAGTATATATA
1 A-TATAAAGTATATAA-T-TATATA
* * *
790421 TAGATAAAGT-T-TTAGTATA-A
1 -ATATAAAGTATATAATTATATA
* *
790441 AGTATATA-TACAT-A-TATAATA
1 A-TATAAAGTATATAATTAT-ATA
790462 ATATAAAGTATAAGTATATTATAT-
1 ATATAAAGTAT-A-TA-ATTATATA
790486 ATATATAA-TATATAATTATA-A
1 ATATA-AAGTATATAATTATATA
*
790507 AGACTAAAGTATATACGCA-TATATA
1 ATA-TAAAGTATATA---ATTATATA
*
790532 AGTATATAA-TATA-AAATATATA
1 A-TATA-AAGTATATAATTATATA
*
790554 AGTATTAAA-TATA-AAGTATATA
1 A-TA-TAAAGTATATAATTATATA
*
790576 AGTATTAAATATAAAGTATAATTATA-A
1 A-TA-TAAA-GT--A-TATAATTATATA
* *
790603 AGACTAAAGTATATAAGTATATA
1 ATA-TAAAGTATATAATTATATA
790626 ATATAAAGTATATAAATATATATATA
1 ATATAAAGTATAT--A-AT-TATATA
*
790652 TATATAAAGTATAAGTATGTATATATA
1 -ATATAAAGTAT-A-TA-AT-TATATA
* *
790679 TATATAAACTATA-AAGTA-A-A
1 -ATATAAAGTATATAATTATATA
* * *
790699 AGTGT-AAGTATATATATAAAGTTTA
1 A-TATAAAGTATATA-AT-TA-TATA
790724 AGTATAAAGTATATATACATATATAATA
1 A-TATAAAGTAT--ATA-AT-TAT-ATA
790752 ATATAAA--ATATAATTATATTA
1 ATATAAAGTATATAATTATA-TA
*
790773 TATATATA-TATATAA--AGTATA
1 -ATATAAAGTATATAATTA-TATA
*
790794 ATTATAAAG-ACTA-AAGTATATA
1 A-TATAAAGTA-TATAATTATATA
*
790816 AGCATATAA-TATA-AA-TATATA
1 A-TATA-AAGTATATAATTATATA
790837 AGTATTAAA-TATAT-ATATATATA
1 A-TA-TAAAGTATATAAT-TATATA
* *
790860 ATATATA-TGTAT-A-TA-ATA
1 ATATAAAGTATATAATTATATA
790878 ATATAAAGTATATAATTATATA
1 ATATAAAGTATATAATTATATA
* * *
790900 ATATAAAGAATCTAAGTAT-TA
1 ATATAAAGTATATAATTATATA
*
790921 A-ATATAAGTATATAAGTAT-TAA
1 ATATA-AAGTATATAATTATAT-A
790943 ATATAAAGTATATAAGTATATATAA
1 ATATAAAGTATATAA-T-TATAT-A
* *
790968 ACTATAAACTATA-AAGTATATA
1 A-TATAAAGTATATAATTATATA
*
790990 TATATATA-TATATATATATATATA
1 -ATATAAAGTATATA-AT-TATATA
791014 TATATA
1 -ATATA
791020 TACTTTATAT
Statistics
Matches: 616, Mismatches: 76, Indels: 210
0.68 0.08 0.23
Matches are distributed among these distances:
18 9 0.01
19 19 0.03
20 48 0.08
21 105 0.17
22 189 0.31
23 65 0.11
24 40 0.06
25 36 0.06
26 42 0.07
27 44 0.07
28 18 0.03
29 1 0.00
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (22 bp):
ATATAAAGTATATAATTATATA
Found at i:790933 original size:43 final size:44
Alignment explanation
Indices: 790877--790961 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 44
790867 TGTATATAAT
* *
790877 AATATAAAGTATATAATTA-TATAATATAAAGAATCTAAGTATTA
1 AATATAAAGTATATAAGTATTA-AATATAAAGAATATAAGTATTA
*
790921 AATAT-AAGTATATAAGTATTAAATATAAAGTATATAAGTAT
1 AATATAAAGTATATAAGTATTAAATATAAAGAATATAAGTAT
790962 ATATAAACTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 30 0.81
44 7 0.19
ACGTcount: A:0.54, C:0.01, G:0.08, T:0.36
Consensus pattern (44 bp):
AATATAAAGTATATAAGTATTAAATATAAAGAATATAAGTATTA
Found at i:791132 original size:59 final size:62
Alignment explanation
Indices: 790998--791241 Score: 185
Period size: 66 Copynumber: 3.8 Consensus size: 62
790988 TATATATATA
* * * **
790998 TATATATATATATATATA-TATATACTTTATATTATATATATTTTAGTCTTTATAATTATACTCT
1 TATATATATATACATATACT-TATACTTTATATTATATATA-TATA--CTTTATACTTA-AAACT
*
791062 CT
61 AT
* *
791064 CTCTCTATATATA-ATATACTTATACTTTATATTATATATATATACTTTATAC-TAAAACT-T
1 -TATATATATATACATATACTTATACTTTATATTATATATATATACTTTATACTTAAAACTAT
* ** * * *
791124 TATATATATATACACATA-TATATGTTTTATAGTT-TATATATATACTTATATACTTTATATTAT
1 TATATATATATACATATACT-TATACTTTATA-TTATATATATATACTT-TATACTTAAAACTAT
* *
791187 TATATACATGTATATATATACTTATACTTTATATTATATACTTATATACTTTATA
1 TATAT--ATATATACATATACTTATACTTTATATTATATA--TATATACTTTATA
791242 TTATTATATA
Statistics
Matches: 145, Mismatches: 19, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
59 11 0.08
60 27 0.19
61 10 0.07
62 6 0.04
63 13 0.09
64 2 0.01
65 26 0.18
66 30 0.21
67 20 0.14
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.52
Consensus pattern (62 bp):
TATATATATATACATATACTTATACTTTATATTATATATATATACTTTATACTTAAAACTAT
Found at i:791179 original size:154 final size:154
Alignment explanation
Indices: 790988--791392 Score: 456
Period size: 154 Copynumber: 2.6 Consensus size: 154
790978 ATAAAGTATA
* * *
790988 TATATA-TATATATA-TATATATATATATATATATACTTTATATTATATATATTTTAGTCTTTAT
1 TATATAGTTTATATACT-TATATATATATATATATACTTTATATTATATATATTTTA-TATATAT
* * * *
791051 AATTATACTCTCTCTCTCTATATA-TAATATAC-TTATACT-TTATATTATATATATATACTTTA
64 AATTATACT-T-TATAT-TATATACTAATATACTTTATACTATTATA-TACATATATACACTTTA
* *
791113 TACTAAAACTTTATATATATATACACATA-
125 TACTAAAACTTTATATATATACACACACAC
* * *
791142 TATAT-GTTT-TATAGTT-TATATATATACTTATATACTTTATATTATTATATACATGTATATAT
1 TATATAGTTTATATACTTATATATATATA--TATATACTTTATATTA-TATATA-TTTTATATAT
* * *
791204 ATACTTATACTTTATATTATATACTTATATACTTTATATTATTATATACATATATACACTTTATA
62 ATAATTATACTTTATATTATATACTAATATACTTTATACTATTATATACATATATACACTTTATA
791269 CTAAAACTTTATATATATACACACACAC
127 CTAAAACTTTATATATATACACACACAC
* *
791297 TTTTTAGTTTATATACTTATATATATATATATATACTTTATATGTATATATATTTTATATACT-T
1 TATATAGTTTATATACTTATATATATATATATATACTTTATAT-TATATATATTTTATATA-TAT
*
791361 -A-TATACTTTATATTATATACTTATATACTTTA
64 AATTATACTTTATATTATATACTAATATACTTTA
791393 GTCTTTATAA
Statistics
Matches: 216, Mismatches: 20, Indels: 31
0.81 0.07 0.12
Matches are distributed among these distances:
152 16 0.07
153 46 0.21
154 73 0.34
155 35 0.16
156 28 0.13
157 8 0.04
158 10 0.05
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (154 bp):
TATATAGTTTATATACTTATATATATATATATATACTTTATATTATATATATTTTATATATATAA
TTATACTTTATATTATATACTAATATACTTTATACTATTATATACATATATACACTTTATACTAA
AACTTTATATATATACACACACAC
Found at i:791242 original size:59 final size:58
Alignment explanation
Indices: 791120--791598 Score: 257
Period size: 59 Copynumber: 8.5 Consensus size: 58
791110 TTATACTAAA
* * * * *
791120 ACTTTATA-TA-TATATACACATATATATGT-TTTATAGTTTATATATATACTTATAT
1 ACTTTATATTATTATATACATATATATATATACTTATACTTTATATATATACATATAT
* *
791175 ACTTTATATTATTATATACATGTATATATATACTTATACTTTATATTATATACTTATAT
1 ACTTTATATTATTATATACATATATATATATACTTATACTTTATA-TATATACATATAT
* * * * * *
791234 ACTTTATATTATTATATACATATATACACTTTATACTAAAACTTTATATATATACACACAC
1 ACTTTATATTATTATATACATATAT--A-TATATACTTATACTTTATATATATACATATAT
* * * *
791295 ACTTTTTAGT-TTATATACTTATATATATATA-TATATACTTTATATGTAT--ATATAT
1 ACTTTATATTATTATATACATATATATATATACT-TATACTTTATATATATACATATAT
* * *
791350 --TTTATA-TACTTATATAC-TTTATATTATATACTTATATACTTTAGTCTTTATA-AT-TAT
1 ACTTTATATTA-TTATATACATATATA-TATATAC-T-TATACTTTA-TATATATACATATAT
* * *
791407 ACTTTATATATATATATATACCT-TATAGTTTATA--TATA-TATTA-A-ATATAC-TTTAT
1 ACTTTATAT-TAT-TATATACATATATA-TATATACTTATACT-TTATATATATACATATAT
* * * * * * *
791462 AGTTTACACT-TTATAT--ATATATATTTATACTTATACTTT-T-TTTATATATGTAT
1 ACTTTATATTATTATATACATATATATATATACTTATACTTTATATATATACATATAT
* * *
791515 A-TTTAAATAAGTGTATGTATAAATATATATATATACTTATA-TTTATATATA-AC-TATAT
1 ACTTTATATTA-T-TA--TATACATATATATATATACTTATACTTTATATATATACATATAT
* *
791573 A-TATATA-TA-TATATATATATATATAT
1 ACTTTATATTATTATATACATATATATAT
791599 TATAATTTTT
Statistics
Matches: 335, Mismatches: 49, Indels: 83
0.72 0.10 0.18
Matches are distributed among these distances:
50 7 0.02
51 4 0.01
52 35 0.10
53 17 0.05
54 23 0.07
55 22 0.07
56 15 0.04
57 53 0.16
58 26 0.08
59 63 0.19
60 17 0.05
61 36 0.11
62 17 0.05
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.51
Consensus pattern (58 bp):
ACTTTATATTATTATATACATATATATATATACTTATACTTTATATATATACATATAT
Found at i:791344 original size:17 final size:16
Alignment explanation
Indices: 791318--791496 Score: 86
Period size: 17 Copynumber: 11.6 Consensus size: 16
791308 TATACTTATA
791318 TATATATATATATACTT
1 TATAT-TATATATACTT
*
791335 TATATGTATATATATTT
1 TATAT-TATATATACTT
791352 TATA-TACTTATATACTT
1 TATATTA--TATATACTT
791369 TATA-T-TATATACTT
1 TATATTATATATACTT
*
791383 ATATACTT-TA-GT-CTT
1 -TATA-TTATATATACTT
791398 TATA--AT-TATACTTT
1 TATATTATATATAC-TT
*
791412 ATATATATATATATACCT
1 -TATAT-TATATATACTT
791430 TATAGTT-TATATA---
1 TATA-TTATATATACTT
*
791443 TATATTAAATATACTT
1 TATATTATATATACTT
* *
791459 TATAGT-T-TACACTT
1 TATATTATATATACTT
791473 TATA-TATATATA-TT
1 TATATTATATATACTT
791487 TATACTTATA
1 TATA-TTATA
791497 CTTTTTTTAT
Statistics
Matches: 128, Mismatches: 11, Indels: 47
0.69 0.06 0.25
Matches are distributed among these distances:
12 4 0.03
13 11 0.09
14 32 0.25
15 16 0.12
16 16 0.12
17 40 0.31
18 4 0.03
19 5 0.04
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.53
Consensus pattern (16 bp):
TATATTATATATACTT
Found at i:791455 original size:76 final size:77
Alignment explanation
Indices: 791320--791490 Score: 192
Period size: 76 Copynumber: 2.2 Consensus size: 77
791310 TACTTATATA
* ** *
791320 TATATATATATACTTTATATGTATATATATTTTATATACTTATATACTTTATATTATATACTTAT
1 TATATATATATACTTTATATATATATATATCCTATATACTTATATACTATATATTATATACTT-T
**
791385 ATACTTTAGTCTT
65 ATACTTTACACTT
*
791398 TATA-AT-TATACTTTATATATATATATATACCT-TATAGTT-TATA-TATATATTAAATATACT
1 TATATATATATACTTTATATATATATATAT-CCTATATACTTATATACTATATATT--ATATACT
*
791458 TTATAGTTTACACTT
63 TTATACTTTACACTT
791473 TATATATATATA-TTTATA
1 TATATATATATACTTTATA
791491 CTTATACTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
74 7 0.09
75 19 0.24
76 43 0.54
77 7 0.09
78 4 0.05
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.53
Consensus pattern (77 bp):
TATATATATATACTTTATATATATATATATCCTATATACTTATATACTATATATTATATACTTTA
TACTTTACACTT
Found at i:791946 original size:24 final size:24
Alignment explanation
Indices: 791901--791946 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
791891 TTAGTCCATT
*
791901 TTTTATATTAATATCAGCTTCACA
1 TTTTATATTAATATCAACTTCACA
*
791925 TTTTATAATTAAT-TCAATTTCA
1 TTTTAT-ATTAATATCAACTTCA
791947 TCCCTCATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.35, C:0.13, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTTATATTAATATCAACTTCACA
Found at i:792051 original size:6 final size:6
Alignment explanation
Indices: 792044--793040 Score: 836
Period size: 6 Copynumber: 166.0 Consensus size: 6
792034 AAACTATAAA
*
792044 GTATAA GTATAT ATGTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT --GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
792094 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
792142 GTATAT GTATAT GTATAT G--TAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
792188 G--TAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
792234 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
792282 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * *
792330 GTATAT GTATAT GTATGT GTATAT GTATAT GTATGT GTATGT GTATGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * * *
792378 GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * * *
792426 GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * * *
792474 GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * * *
792522 GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGTGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTA--TAT
* * * * * * * * *
792572 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAC GTGTAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
** ** ** ** * * * *
792620 GTACGT GTACGT GTACGT GTACGT GTGTAT GTGTAT GTGTAT GTGTAGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATA-T
* * * * * * * *
792669 GTATGTAT GTGTAT GTGTGT GTATGT GTATGT GTATGT GTATGT GTATGT
1 GTA--TAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * * *
792719 GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * * *
792767 GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * * *
792815 GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * *
792863 GTATGT GTATGT GTATGT GTATGT GTGTAT GTGTAT GTGTAT G--TAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * * * *
792909 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * * * * * * *
792957 GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT GTATGT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
* * *
793005 GTATGT GTATGT GTATAT GTATAT GTATAT ATATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
793041 ATGTATATAT
Statistics
Matches: 954, Mismatches: 24, Indels: 26
0.95 0.02 0.03
Matches are distributed among these distances:
4 12 0.01
6 923 0.97
7 3 0.00
8 14 0.01
9 2 0.00
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (6 bp):
GTATAT
Found at i:792076 original size:18 final size:18
Alignment explanation
Indices: 792057--793032 Score: 1321
Period size: 18 Copynumber: 54.6 Consensus size: 18
792047 TAAGTATATA
* * *
792057 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792075 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792093 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792111 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792129 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* *
792147 TGTATATGTATATGTATG
1 TGTATGTGTATGTGTATG
* * *
792165 TATATGTATATGTATATG
1 TGTATGTGTATGTGTATG
* * *
792183 TATATGTATGTATATGTATA
1 TGTATG--TGTATGTGTATG
* * *
792203 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792221 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792239 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792257 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792275 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792293 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* * *
792311 TGTATATGTATATGTATA
1 TGTATGTGTATGTGTATG
* *
792329 TGTATATGTATATGTATG
1 TGTATGTGTATGTGTATG
* *
792347 TGTATATGTATATGTATG
1 TGTATGTGTATGTGTATG
792365 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792383 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792401 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792419 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792437 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792455 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792473 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792491 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792509 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792527 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792545 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792563 TGTATGTG--TGTGTATG
1 TGTATGTGTATGTGTATG
792579 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
*
792597 TGTATGTGTATGTGTACG
1 TGTATGTGTATGTGTATG
* *
792615 TGTA--TGTACGTGTACG
1 TGTATGTGTATGTGTATG
*
792631 TGTACGTGTACGTGTGTATG
1 TGTATGTGTA--TGTGTATG
792651 TGTATGTGTATGTGTA-G
1 TGTATGTGTATGTGTATG
792668 TGTA--TGTATGTGTATG
1 TGTATGTGTATGTGTATG
792684 TG--TGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792700 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792718 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792736 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792754 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792772 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792790 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792808 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792826 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792844 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792862 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792880 TGTATGTGTGTATGTGTATG
1 TGTA--TGTGTATGTGTATG
792900 TGTA--TGTATGTGTATG
1 TGTATGTGTATGTGTATG
792916 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792934 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792952 TG--TGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792968 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
792986 TGTATGTGTATGTGTATG
1 TGTATGTGTATGTGTATG
*
793004 TGTATGTGTATGTGTATA
1 TGTATGTGTATGTGTATG
*
793022 TGTATATGTAT
1 TGTATGTGTAT
793033 ATATATATAT
Statistics
Matches: 917, Mismatches: 22, Indels: 38
0.94 0.02 0.04
Matches are distributed among these distances:
15 10 0.01
16 80 0.09
17 5 0.01
18 777 0.85
20 45 0.05
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (18 bp):
TGTATGTGTATGTGTATG
Found at i:793034 original size:12 final size:12
Alignment explanation
Indices: 792057--793032 Score: 1321
Period size: 12 Copynumber: 81.9 Consensus size: 12
792047 TAAGTATATA
* *
792057 TGTATATGTATA
1 TGTATGTGTATG
* *
792069 TGTATATGTATA
1 TGTATGTGTATG
* *
792081 TGTATATGTATA
1 TGTATGTGTATG
* *
792093 TGTATATGTATA
1 TGTATGTGTATG
* *
792105 TGTATATGTATA
1 TGTATGTGTATG
* *
792117 TGTATATGTATA
1 TGTATGTGTATG
* *
792129 TGTATATGTATA
1 TGTATGTGTATG
* *
792141 TGTATATGTATA
1 TGTATGTGTATG
*
792153 TGTATATGTATG
1 TGTATGTGTATG
* *
792165 TATATGTATATG
1 TGTATGTGTATG
* *
792177 TATATGTATATG
1 TGTATGTGTATG
* *
792189 TATGTATATGTATA
1 --TGTATGTGTATG
* *
792203 TGTATATGTATA
1 TGTATGTGTATG
* *
792215 TGTATATGTATA
1 TGTATGTGTATG
* *
792227 TGTATATGTATA
1 TGTATGTGTATG
* *
792239 TGTATATGTATA
1 TGTATGTGTATG
* *
792251 TGTATATGTATA
1 TGTATGTGTATG
* *
792263 TGTATATGTATA
1 TGTATGTGTATG
* *
792275 TGTATATGTATA
1 TGTATGTGTATG
* *
792287 TGTATATGTATA
1 TGTATGTGTATG
* *
792299 TGTATATGTATA
1 TGTATGTGTATG
* *
792311 TGTATATGTATA
1 TGTATGTGTATG
* *
792323 TGTATATGTATA
1 TGTATGTGTATG
*
792335 TGTATATGTATG
1 TGTATGTGTATG
* *
792347 TGTATATGTATA
1 TGTATGTGTATG
792359 TGTATGTGTATG
1 TGTATGTGTATG
792371 TGTATGTGTATG
1 TGTATGTGTATG
792383 TGTATGTGTATG
1 TGTATGTGTATG
792395 TGTATGTGTATG
1 TGTATGTGTATG
792407 TGTATGTGTATG
1 TGTATGTGTATG
792419 TGTATGTGTATG
1 TGTATGTGTATG
792431 TGTATGTGTATG
1 TGTATGTGTATG
792443 TGTATGTGTATG
1 TGTATGTGTATG
792455 TGTATGTGTATG
1 TGTATGTGTATG
792467 TGTATGTGTATG
1 TGTATGTGTATG
792479 TGTATGTGTATG
1 TGTATGTGTATG
792491 TGTATGTGTATG
1 TGTATGTGTATG
792503 TGTATGTGTATG
1 TGTATGTGTATG
792515 TGTATGTGTATG
1 TGTATGTGTATG
792527 TGTATGTGTATG
1 TGTATGTGTATG
792539 TGTATGTGTATG
1 TGTATGTGTATG
792551 TGTATGTGTATG
1 TGTATGTGTATG
792563 TGTATGTG--TG
1 TGTATGTGTATG
792573 TGTATGTGTATG
1 TGTATGTGTATG
792585 TGTATGTGTATG
1 TGTATGTGTATG
792597 TGTATGTGTATG
1 TGTATGTGTATG
*
792609 TGTACGTGTA--
1 TGTATGTGTATG
* *
792619 TGTACGTGTACG
1 TGTATGTGTATG
*
792631 TGTACGTGTACGTG
1 TGTATGTGTA--TG
792645 TGTATGTGTATG
1 TGTATGTGTATG
792657 TGTATGTGTA-G
1 TGTATGTGTATG
792668 TGTA--TGTATG
1 TGTATGTGTATG
792678 TGTATGTG--TG
1 TGTATGTGTATG
792688 TGTATGTGTATG
1 TGTATGTGTATG
792700 TGTATGTGTATG
1 TGTATGTGTATG
792712 TGTATGTGTATG
1 TGTATGTGTATG
792724 TGTATGTGTATG
1 TGTATGTGTATG
792736 TGTATGTGTATG
1 TGTATGTGTATG
792748 TGTATGTGTATG
1 TGTATGTGTATG
792760 TGTATGTGTATG
1 TGTATGTGTATG
792772 TGTATGTGTATG
1 TGTATGTGTATG
792784 TGTATGTGTATG
1 TGTATGTGTATG
792796 TGTATGTGTATG
1 TGTATGTGTATG
792808 TGTATGTGTATG
1 TGTATGTGTATG
792820 TGTATGTGTATG
1 TGTATGTGTATG
792832 TGTATGTGTATG
1 TGTATGTGTATG
792844 TGTATGTGTATG
1 TGTATGTGTATG
792856 TGTATGTGTATG
1 TGTATGTGTATG
792868 TGTATGTGTATG
1 TGTATGTGTATG
792880 TGTATGTGTGTATG
1 TGTA--TGTGTATG
792894 TGTATGTGTA--
1 TGTATGTGTATG
792904 TGTATGTGTATG
1 TGTATGTGTATG
792916 TGTATGTGTATG
1 TGTATGTGTATG
792928 TGTATGTGTATG
1 TGTATGTGTATG
792940 TGTATGTGTATG
1 TGTATGTGTATG
792952 TG--TGTGTATG
1 TGTATGTGTATG
792962 TGTATGTGTATG
1 TGTATGTGTATG
792974 TGTATGTGTATG
1 TGTATGTGTATG
792986 TGTATGTGTATG
1 TGTATGTGTATG
792998 TGTATGTGTATG
1 TGTATGTGTATG
*
793010 TGTATGTGTATA
1 TGTATGTGTATG
*
793022 TGTATATGTAT
1 TGTATGTGTAT
793033 ATATATATAT
Statistics
Matches: 928, Mismatches: 17, Indels: 38
0.94 0.02 0.04
Matches are distributed among these distances:
9 4 0.00
10 55 0.06
11 5 0.01
12 834 0.90
14 30 0.03
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (12 bp):
TGTATGTGTATG
Found at i:793035 original size:14 final size:14
Alignment explanation
Indices: 793006--793050 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
792996 TGTGTATGTG
* *
793006 TATGTGTATGTGTA
1 TATGTATATGTATA
793020 TATGTATATGTATA
1 TATGTATATGTATA
*
793034 TATATATATGTATA
1 TATGTATATGTATA
793048 TAT
1 TAT
793051 ATAAAATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (14 bp):
TATGTATATGTATA
Found at i:793051 original size:14 final size:14
Alignment explanation
Indices: 793012--793053 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
793002 TGTGTATGTG
* *
793012 TATGTGTATATGTA
1 TATGTATATATATA
793026 TATGTATATATATA
1 TATGTATATATATA
793040 TATGTATATATATA
1 TATGTATATATATA
793054 AAATATAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:793072 original size:21 final size:21
Alignment explanation
Indices: 793018--793074 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
793008 TGTGTATGTG
* * *
793018 TATATGTATATGTAT-ATATA
1 TATATGTACATATATAAAATA
*
793038 TATATGTATATATATAAAATA
1 TATATGTACATATATAAAATA
793059 TA-ATGTACATTATATA
1 TATATGTACA-TATATA
793075 TACATGCATC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 20 0.62
21 12 0.38
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (21 bp):
TATATGTACATATATAAAATA
Found at i:793197 original size:20 final size:19
Alignment explanation
Indices: 793174--793211 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
793164 AATTCTGTCT
793174 ATTTTACAATTTTTCTTTAC
1 ATTTTACAATTTTT-TTTAC
793194 ATTTTACAATTTTTTTTA
1 ATTTTACAATTTTTTTTA
793212 TTTGATCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTTACAATTTTTTTTAC
Found at i:793565 original size:8 final size:7
Alignment explanation
Indices: 793536--793587 Score: 54
Period size: 8 Copynumber: 7.1 Consensus size: 7
793526 TGTGTGTATA
793536 TATAAAG
1 TATAAAG
793543 TATATAA-
1 TATA-AAG
793550 TATAAAG
1 TATAAAG
793557 TATTAAAG
1 TA-TAAAG
793565 TATATAA-
1 TATA-AAG
793572 TATAAAG
1 TATAAAG
793579 TAATAAAG
1 T-ATAAAG
793587 T
1 T
793588 GTTTGGATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
6 4 0.10
7 17 0.44
8 18 0.46
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.35
Consensus pattern (7 bp):
TATAAAG
Found at i:793566 original size:22 final size:22
Alignment explanation
Indices: 793538--793633 Score: 108
Period size: 22 Copynumber: 4.4 Consensus size: 22
793528 TGTGTATATA
793538 TAAAGTATATAATATAAAGTAT
1 TAAAGTATATAATATAAAGTAT
*
793560 TAAAGTATATAATATAAAGTAA
1 TAAAGTATATAATATAAAGTAT
* * *
793582 TAAAGTGTTTGGATAT-AAGTAT
1 TAAAGTATAT-AATATAAAGTAT
*
793604 TAAAGTATATAA-ATATCAGTAT
1 TAAAGTATATAATATA-AAGTAT
793626 TAAA-TATA
1 TAAAGTATA
793634 AAGTATATTA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
20 2 0.03
21 5 0.08
22 51 0.82
23 4 0.06
ACGTcount: A:0.51, C:0.01, G:0.11, T:0.36
Consensus pattern (22 bp):
TAAAGTATATAATATAAAGTAT
Found at i:793638 original size:14 final size:15
Alignment explanation
Indices: 793549--793641 Score: 61
Period size: 14 Copynumber: 6.3 Consensus size: 15
793539 AAAGTATATA
793549 ATATAAAGTATTAAAGT
1 ATATAAA-TA-TAAAGT
793566 ATAT-AATATAAAGT
1 ATATAAATATAAAGT
* ** *
793580 A-ATAAAGTGT-TTGG
1 ATATAAA-TATAAAGT
*
793594 ATATAAGTATTAAAGT
1 ATATAAATA-TAAAGT
*
793610 ATATAAATAT-CAGT
1 ATATAAATATAAAGT
793624 AT-TAAATATAAAGT
1 ATATAAATATAAAGT
793638 ATAT
1 ATAT
793642 TAATTATCAT
Statistics
Matches: 57, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
13 9 0.16
14 22 0.39
15 11 0.19
16 11 0.19
17 4 0.07
ACGTcount: A:0.51, C:0.01, G:0.12, T:0.37
Consensus pattern (15 bp):
ATATAAATATAAAGT
Found at i:793638 original size:28 final size:30
Alignment explanation
Indices: 793604--793669 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 30
793594 ATATAAGTAT
793604 TAAAGTATA-TAAATATCAGT-ATTAA-ATA
1 TAAAGTATATTAAATATCA-TAATTAATATA
*
793632 TAAAGTATATTAATTATCATAATTAATATA
1 TAAAGTATATTAAATATCATAATTAATATA
*
793662 TTAAGTAT
1 TAAAGTAT
793670 GTTTATAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 10 0.30
29 13 0.39
30 10 0.30
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (30 bp):
TAAAGTATATTAAATATCATAATTAATATA
Found at i:793663 original size:21 final size:21
Alignment explanation
Indices: 793637--793699 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
793627 AAATATAAAG
793637 TATATTAATTATCATAATTAA
1 TATATTAATTATCATAATTAA
* ** *
793658 TATATTAAGTATGTTTA-TAA
1 TATATTAATTATCATAATTAA
793678 -AT-TTAATTATCATAATTAA
1 TATATTAATTATCATAATTAA
793697 TAT
1 TAT
793700 TTTATTGTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
18 9 0.28
19 5 0.16
20 5 0.16
21 13 0.41
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
TATATTAATTATCATAATTAA
Found at i:793889 original size:16 final size:16
Alignment explanation
Indices: 793868--793906 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
793858 CGGATCATTC
*
793868 ACAGGTCAGGTTCATA
1 ACAGGTCAGGTTCAAA
*
793884 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTCAAA
793900 ACAGGTC
1 ACAGGTC
793907 GGGTAATACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (16 bp):
ACAGGTCAGGTTCAAA
Found at i:795721 original size:2 final size:2
Alignment explanation
Indices: 795716--795767 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
795706 GTATTTAAAT
795716 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
795758 TA TA TA TA TA
1 TA TA TA TA TA
795768 CTTTTATTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:797167 original size:38 final size:39
Alignment explanation
Indices: 797124--797198 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 39
797114 TTACTTTTTG
797124 AAATTTAGTTTTTATATTAATTATAATT-TGTATATTAT
1 AAATTTAGTTTTTATATTAATTATAATTCTGTATATTAT
* * * *
797162 AAATTTGGTTTTTATGTTAATTCTAATTCTTTATATT
1 AAATTTAGTTTTTATATTAATTATAATTCTGTATATT
797199 CTTTATATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 25 0.78
39 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.59
Consensus pattern (39 bp):
AAATTTAGTTTTTATATTAATTATAATTCTGTATATTAT
Found at i:797753 original size:2 final size:2
Alignment explanation
Indices: 797746--797897 Score: 106
Period size: 2 Copynumber: 78.0 Consensus size: 2
797736 TTTAATTTTC
* * *
797746 TA TA TA TA TA TA TA TA TA CTA TG TA TA AA CTA TA TA -A AA TA TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
797789 TA GTT TA TA AA T- TA TA -A TT TA TA T- TA -A TA TA GTA TA TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * * *
797829 TA TA TG TA TA AA TA -A TA TA -A GTA -A TC TA CA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
797868 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
797898 GAAACACTAT
Statistics
Matches: 117, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
1 9 0.08
2 101 0.86
3 7 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (2 bp):
TA
Found at i:798200 original size:13 final size:13
Alignment explanation
Indices: 798182--798211 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
798172 GTCATAAATC
*
798182 TATGACACGCATT
1 TATGACACACATT
798195 TATGACACACATT
1 TATGACACACATT
798208 TATG
1 TATG
798212 CCTTACATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (13 bp):
TATGACACACATT
Found at i:798267 original size:13 final size:13
Alignment explanation
Indices: 798249--798296 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
798239 CCTTACATTC
*
798249 GTATGACACGCAT
1 GTATGACACACAT
**
798262 GTATGACTTACATT
1 GTATGACACACA-T
798276 CGTATGACACACAT
1 -GTATGACACACAT
798290 GTATGAC
1 GTATGAC
798297 TTTCATTGCG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
13 16 0.57
14 2 0.07
15 10 0.36
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (13 bp):
GTATGACACACAT
Found at i:798271 original size:28 final size:28
Alignment explanation
Indices: 798195--798303 Score: 157
Period size: 28 Copynumber: 3.9 Consensus size: 28
798185 GACACGCATT
* *
798195 TATGACACACATTTATGCCTTACATTCG
1 TATGACACACATGTATGACTTACATTCG
* *
798223 TATGACA-GCATGTATGCCTTACATTCG
1 TATGACACACATGTATGACTTACATTCG
*
798250 TATGACACGCATGTATGACTTACATTCG
1 TATGACACACATGTATGACTTACATTCG
*
798278 TATGACACACATGTATGACTTTCATT
1 TATGACACACATGTATGACTTACATT
798304 GCGTGTCATT
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
27 25 0.33
28 50 0.67
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (28 bp):
TATGACACACATGTATGACTTACATTCG
Found at i:798279 original size:55 final size:56
Alignment explanation
Indices: 798195--798303 Score: 157
Period size: 55 Copynumber: 2.0 Consensus size: 56
798185 GACACGCATT
* * * *
798195 TATGACACACATTTATGCCTTACATTCGTATGACA-GCATGTATGCCTTACATTCG
1 TATGACACACATGTATGACTTACATTCGTATGACACACATGTATGACTTACATTCG
* *
798250 TATGACACGCATGTATGACTTACATTCGTATGACACACATGTATGACTTTCATT
1 TATGACACACATGTATGACTTACATTCGTATGACACACATGTATGACTTACATT
798304 GCGTGTCATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
55 32 0.68
56 15 0.32
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (56 bp):
TATGACACACATGTATGACTTACATTCGTATGACACACATGTATGACTTACATTCG
Found at i:801378 original size:16 final size:16
Alignment explanation
Indices: 801357--801391 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
801347 ATCAACTTGT
801357 AGTTAGAAACCTTTGC
1 AGTTAGAAACCTTTGC
801373 AGTTAGAAACCTTTGC
1 AGTTAGAAACCTTTGC
801389 AGT
1 AGT
801392 GTACCATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (16 bp):
AGTTAGAAACCTTTGC
Found at i:801463 original size:2 final size:2
Alignment explanation
Indices: 801456--801491 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
801446 AATGAAATCA
801456 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
801492 GTCTAATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:802472 original size:2 final size:2
Alignment explanation
Indices: 802434--802463 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
802424 ATATATAACC
802434 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
802464 GACTATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.