Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007916.1 Hibiscus syriacus cultivar Beakdansim tig00110319_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3725575
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 16 of 16
Found at i:3577743 original size:21 final size:21
Alignment explanation
Indices: 3577717--3577810 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
3577707 TATGCCATCT
* *
3577717 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATGCCTAGC
*
3577738 CCGCAGGGTTACATACCTAGC
1 CCGCAGGGTTACATGCCTAGC
3577759 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
3577780 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
3577801 CCGCAGGGTT
1 CCGCAGGGTT
3577811 TTATACCATA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
20 2 0.03
21 64 0.94
22 2 0.03
ACGTcount: A:0.19, C:0.35, G:0.27, T:0.19
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:3578392 original size:33 final size:34
Alignment explanation
Indices: 3578333--3578429 Score: 124
Period size: 33 Copynumber: 2.9 Consensus size: 34
3578323 AAATGTTTTT
* *
3578333 AAAATACAAATTATATTATTCGAAATTTAAAATA
1 AAAATAAAAATTATATTATTCAAAATTTAAAATA
* * *
3578367 AAAATAAAAATAATATTATTC-AAATTTAAATTT
1 AAAATAAAAATTATATTATTCAAAATTTAAAATA
* *
3578400 AAAATATAAATTATAGTATTCAAAATTTAA
1 AAAATAAAAATTATATTATTCAAAATTTAA
3578430 CATTAAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
33 28 0.51
34 27 0.49
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (34 bp):
AAAATAAAAATTATATTATTCAAAATTTAAAATA
Found at i:3578436 original size:34 final size:32
Alignment explanation
Indices: 3578331--3578436 Score: 122
Period size: 34 Copynumber: 3.2 Consensus size: 32
3578321 ATAAATGTTT
*
3578331 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTC-AAATTT-AAA
* *
3578365 TAAAAATAAAAATAATATTATTCAAATTTAAA
1 TTAAAATAAAAATTATATTATTCAAATTTAAA
* *
3578397 TTTAAAATATAAATTATAGTATTCAAAATTTAACA
1 -TTAAAATAAAAATTATATTATTC-AAATTTAA-A
3578432 TTAAA
1 TTAAA
3578437 TTTCAACTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
32 3 0.05
33 25 0.40
34 33 0.53
35 1 0.02
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (32 bp):
TTAAAATAAAAATTATATTATTCAAATTTAAA
Found at i:3579057 original size:128 final size:128
Alignment explanation
Indices: 3578829--3579456 Score: 1177
Period size: 128 Copynumber: 4.9 Consensus size: 128
3578819 TTACCTGATT
*
3578829 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
3578894 TGATGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
3578957 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
3579022 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
3579085 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
3579150 TGACGAAATAATAGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
3579213 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
** *
3579278 TGACGAAATAATGGAAGGCGCGCAACCGGGAATGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
3579341 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
* *
3579406 TGATGAAATAATAGAAGGCGCG-CCCCGGGAACGCGCCTTCATGTGAATAGT
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGT
3579457 ACTCCGATTA
Statistics
Matches: 488, Mismatches: 12, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
127 26 0.05
128 462 0.95
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.23
Consensus pattern (128 bp):
TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:3579540 original size:8 final size:8
Alignment explanation
Indices: 3579527--3579564 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
3579517 TCACAATCTT
3579527 TCAAATTC
1 TCAAATTC
3579535 TCAAATTC
1 TCAAATTC
* *
3579543 CCAAACTC
1 TCAAATTC
3579551 T-AAATTC
1 TCAAATTC
3579558 TCAAATT
1 TCAAATT
3579565 GTCTGAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:3584384 original size:2 final size:2
Alignment explanation
Indices: 3584377--3584414 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
3584367 ATATTAAGTA
3584377 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3584415 TTTGAATCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3586467 original size:35 final size:35
Alignment explanation
Indices: 3586416--3586492 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
3586406 AATACATTCA
3586416 TCAATTATATTATAAACCCCAAAATCCAAAACACT
1 TCAATTATATTATAAACCCCAAAATCCAAAACACT
* * * * *
3586451 TCAATTATATTCTAAACCTCAAATTTCAAAATACT
1 TCAATTATATTATAAACCCCAAAATCCAAAACACT
3586486 TCAATTA
1 TCAATTA
3586493 CATGCCCAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.32
Consensus pattern (35 bp):
TCAATTATATTATAAACCCCAAAATCCAAAACACT
Found at i:3586944 original size:148 final size:148
Alignment explanation
Indices: 3586670--3586964 Score: 500
Period size: 148 Copynumber: 2.0 Consensus size: 148
3586660 AAATACTCAA
* * *
3586670 TTCAGTTTATAAAATAGTTTAATCGAAATTTTTTCGATTTGAGTTTATAAAATTTAAATCAAGTC
1 TTCAGTTTATAAAATAGTTGAATCGAAATTTTTTCGATTTGAGTTCATAAAATTTAAATAAAGTC
* *
3586735 GAATTGAATTGAATTTTCGAGTTTCTGTTTAAATTTAATTATAAATATTTATCATATTATAATAT
66 GAATTGAATTGAATTTTCGAGTTTCTGTTTAAATTTAATTATAAATATTTATAATACTATAATAT
*
3586800 TTTTTGATTCAAATTTAG
131 TATTTGATTCAAATTTAG
* *
3586818 TTCAGTTTATAAAATAGTTGACTCGAATTTTTTTCGATTTGAGTTCATAAAATTTAAATAAAGTC
1 TTCAGTTTATAAAATAGTTGAATCGAAATTTTTTCGATTTGAGTTCATAAAATTTAAATAAAGTC
*
3586883 GAATTGAATTGAATTTTTGAGTTTCTGTTTAAATTTAATTATAAATATTTATAATACTATAATAT
66 GAATTGAATTGAATTTTCGAGTTTCTGTTTAAATTTAATTATAAATATTTATAATACTATAATAT
*
3586948 TATTTGATTCTAATTTA
131 TATTTGATTCAAATTTA
3586965 AATAATTTTT
Statistics
Matches: 137, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
148 137 1.00
ACGTcount: A:0.36, C:0.06, G:0.10, T:0.48
Consensus pattern (148 bp):
TTCAGTTTATAAAATAGTTGAATCGAAATTTTTTCGATTTGAGTTCATAAAATTTAAATAAAGTC
GAATTGAATTGAATTTTCGAGTTTCTGTTTAAATTTAATTATAAATATTTATAATACTATAATAT
TATTTGATTCAAATTTAG
Found at i:3588123 original size:25 final size:22
Alignment explanation
Indices: 3588084--3588146 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
3588074 TTAATAAATA
*
3588084 ATTTATAAATTTTATAAATTTTTT
1 ATTTATAAA-ATTATAAA-TTTTT
* *
3588108 GTTTTAATAAAATTATACATTTTT
1 -ATTT-ATAAAATTATAAATTTTT
3588132 ATTTATAAAATTATA
1 ATTTATAAAATTATA
3588147 TATAGTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
22 11 0.33
23 3 0.09
24 5 0.15
25 9 0.27
26 5 0.15
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
ATTTATAAAATTATAAATTTTT
Found at i:3593608 original size:23 final size:24
Alignment explanation
Indices: 3593577--3593639 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 24
3593567 CAGCTCGTAT
*
3593577 AAATACACCGAAGTGCCACGT-AG
1 AAATGCACCGAAGTGCCACGTAAG
* * *
3593600 AATTGCACCGTAGTGCCGCGTAAG
1 AAATGCACCGAAGTGCCACGTAAG
3593624 AAATGCACCGAAGTGC
1 AAATGCACCGAAGTGC
3593640 TATATAAGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 17 0.52
24 16 0.48
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.16
Consensus pattern (24 bp):
AAATGCACCGAAGTGCCACGTAAG
Found at i:3594888 original size:9 final size:10
Alignment explanation
Indices: 3594863--3594894 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
3594853 ACAGTTAATG
3594863 TAAT-ACATA
1 TAATCACATA
3594872 TAATCACATA
1 TAATCACATA
3594882 TAA-CACATA
1 TAATCACATA
3594891 TAAT
1 TAAT
3594895 TATGACAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 13 0.62
10 8 0.38
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (10 bp):
TAATCACATA
Found at i:3601383 original size:15 final size:17
Alignment explanation
Indices: 3601351--3601383 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
3601341 ACTTTTTTAA
3601351 ATAATAAATAAAATAAT
1 ATAATAAATAAAATAAT
3601368 ATAA-AAATAAAA-AAT
1 ATAATAAATAAAATAAT
3601383 A
1 A
3601384 CTCGTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
ATAATAAATAAAATAAT
Found at i:3601674 original size:59 final size:54
Alignment explanation
Indices: 3601611--3601717 Score: 142
Period size: 59 Copynumber: 1.9 Consensus size: 54
3601601 AAACTAAATA
3601611 TCTTTTATTATTAAAATTTAAACATATAATATTATCTTTTAATTTAAAATATTTAAACT
1 TCTTTTATTATTAAAATTT-AAC-TA-AATATTA--TTTTAATTTAAAATATTTAAACT
* * *
3601670 TCTTTTATTATTTAAATTTAACTAGATATTATTTTAATTTGAAATATT
1 TCTTTTATTATTAAAATTTAACTAAATATTATTTTAATTTAAAATATT
3601718 CAAAGTATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 16 0.36
56 6 0.13
57 2 0.04
58 3 0.07
59 18 0.40
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (54 bp):
TCTTTTATTATTAAAATTTAACTAAATATTATTTTAATTTAAAATATTTAAACT
Found at i:3605502 original size:21 final size:21
Alignment explanation
Indices: 3605478--3605524 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
3605468 GATCTATGTC
3605478 TTCCACATCATGAACTATTCT
1 TTCCACATCATGAACTATTCT
* *
3605499 TTCCACATCCTGAGCTATTCT
1 TTCCACATCATGAACTATTCT
3605520 TTCCA
1 TTCCA
3605525 AAACATTAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.38
Consensus pattern (21 bp):
TTCCACATCATGAACTATTCT
Found at i:3607430 original size:21 final size:21
Alignment explanation
Indices: 3607399--3607444 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
3607389 AATATTCAAA
3607399 TAAAAAAATATAT-CTTAATT
1 TAAAAAAATATATACTTAATT
*
3607419 TAAAATAAATATATATTTAATT
1 TAAAA-AAATATATACTTAATT
3607441 TAAA
1 TAAA
3607445 TATTAAATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.22
21 8 0.35
22 10 0.43
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAAAAAATATATACTTAATT
Found at i:3608331 original size:22 final size:21
Alignment explanation
Indices: 3608306--3608346 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
3608296 TATAAAAAAT
3608306 TATTTTTATTAAATATTTTTGG
1 TATTTTTATTAAAT-TTTTTGG
*
3608328 TATTTTTATTTAATTTTTT
1 TATTTTTATTAAATTTTTT
3608347 AAATAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (21 bp):
TATTTTTATTAAATTTTTTGG
Found at i:3609777 original size:27 final size:26
Alignment explanation
Indices: 3609746--3609802 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
3609736 TAATTTTAAT
* *
3609746 TTTTTTTGAGTTT-TTTAATATAACAA
1 TTTTTTTAAGTTTCTTTAAAATAA-AA
*
3609772 TATTTTTAAGTTTCTTTAAAATAAAA
1 TTTTTTTAAGTTTCTTTAAAATAAAA
3609798 TTTTT
1 TTTTT
3609803 AAAATTACCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (26 bp):
TTTTTTTAAGTTTCTTTAAAATAAAA
Found at i:3614997 original size:22 final size:19
Alignment explanation
Indices: 3614955--3614997 Score: 50
Period size: 22 Copynumber: 2.1 Consensus size: 19
3614945 TTCATAGTAT
*
3614955 AATTTATTTGTGAATCAAC
1 AATTTATTTGTAAATCAAC
3614974 AATTTGATTTGTTAAATCCAAC
1 AATTT-ATTTG-TAAAT-CAAC
3614996 AA
1 AA
3614998 AGATAACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 5 0.25
21 4 0.20
22 6 0.30
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.40
Consensus pattern (19 bp):
AATTTATTTGTAAATCAAC
Found at i:3618134 original size:2 final size:2
Alignment explanation
Indices: 3618127--3618162 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
3618117 CTGCACATGT
3618127 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
3618163 TCAGGGTAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:3623628 original size:90 final size:89
Alignment explanation
Indices: 3623473--3623647 Score: 305
Period size: 90 Copynumber: 2.0 Consensus size: 89
3623463 TAACACACCC
3623473 TTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATGAAATCTATATT
1 TTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATGAAATCTATATT
* *
3623538 TAATTAATTGGAATTTAATAATTA
66 TAATTAATTGAAATTAAATAATTA
* *
3623562 TTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTATAT
1 TTTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATGAAATCTATAT
3623627 TTAATTAATTGAAATTAAATA
65 TTAATTAATTGAAATTAAATA
3623648 TTTGGGATTA
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 32 0.40
90 49 0.60
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.45
Consensus pattern (89 bp):
TTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATGAAATCTATATT
TAATTAATTGAAATTAAATAATTA
Found at i:3624530 original size:2 final size:2
Alignment explanation
Indices: 3624523--3624555 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
3624513 TTTATGTTAA
3624523 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
3624556 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:3626989 original size:37 final size:37
Alignment explanation
Indices: 3626913--3626989 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
3626903 TTTTTATATT
*
3626913 TTTAATTTTGTAAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
* * *
3626950 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTAT-CAA
3626987 TTT
1 TTT
3626990 GTAATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 13 0.37
37 22 0.63
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (37 bp):
TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
Found at i:3629165 original size:35 final size:35
Alignment explanation
Indices: 3629126--3629232 Score: 180
Period size: 35 Copynumber: 3.1 Consensus size: 35
3629116 TTGATGTTAT
* *
3629126 TTATAATAAGTCATGT-CACTTGGTGAATAGACTTA
1 TTATAATAAGTCATGTAC-CTTAGTGAATGGACTTA
3629161 TTATAATAAGTCATGTACCTTAGTGAATGGACTTA
1 TTATAATAAGTCATGTACCTTAGTGAATGGACTTA
3629196 TTATAATAAGTCATGTACCTTAGTGAATGGACTTA
1 TTATAATAAGTCATGTACCTTAGTGAATGGACTTA
3629231 TT
1 TT
3629233 TTTTAGTTTA
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
35 68 0.99
36 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (35 bp):
TTATAATAAGTCATGTACCTTAGTGAATGGACTTA
Found at i:3629755 original size:3 final size:3
Alignment explanation
Indices: 3629749--3629776 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
3629739 ATAATAATAT
3629749 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
3629777 CTCGGATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:3634903 original size:24 final size:24
Alignment explanation
Indices: 3634876--3634929 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
3634866 TGTCCTTCCC
*
3634876 TATTTGGATATTTTGAAAGTATAT
1 TATTGGGATATTTTGAAAGTATAT
3634900 TATTGGGATATTTTGAAAGTATAT
1 TATTGGGATATTTTGAAAGTATAT
3634924 TATTGG
1 TATTGG
3634930 AATGTGAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.48
Consensus pattern (24 bp):
TATTGGGATATTTTGAAAGTATAT
Found at i:3635748 original size:20 final size:20
Alignment explanation
Indices: 3635723--3635763 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
3635713 ACCGTTGGGC
*
3635723 TTGATATTACTATAGCAGTA
1 TTGATACTACTATAGCAGTA
*
3635743 TTGATACTACTGTAGCAGTA
1 TTGATACTACTATAGCAGTA
3635763 T
1 T
3635764 CGGTACTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (20 bp):
TTGATACTACTATAGCAGTA
Found at i:3635770 original size:20 final size:20
Alignment explanation
Indices: 3635725--3635770 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
3635715 CGTTGGGCTT
* *
3635725 GATATTACTATAGCAGTATT
1 GATACTACTATAGCAGTATC
*
3635745 GATACTACTGTAGCAGTATC
1 GATACTACTATAGCAGTATC
*
3635765 GGTACT
1 GATACT
3635771 CATTTTGCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (20 bp):
GATACTACTATAGCAGTATC
Found at i:3635847 original size:19 final size:20
Alignment explanation
Indices: 3635825--3635862 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3635815 GTTCACACAA
3635825 TATC-GAACTATTCATACAG
1 TATCGGAACTATTCATACAG
*
3635844 TATCGGTACTATTCATACA
1 TATCGGAACTATTCATACA
3635863 ATATAGTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
TATCGGAACTATTCATACAG
Found at i:3635873 original size:19 final size:19
Alignment explanation
Indices: 3635816--3635875 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
3635806 TTCATCAATG
* * *
3635816 TTCACACAATATCGAACTA
1 TTCATACAATATAGTACTA
* *
3635835 TTCATACAGTATCGGTACTA
1 TTCATACAATAT-AGTACTA
3635855 TTCATACAATATAGTACTA
1 TTCATACAATATAGTACTA
3635874 TT
1 TT
3635876 TATAAAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (19 bp):
TTCATACAATATAGTACTA
Found at i:3636096 original size:74 final size:75
Alignment explanation
Indices: 3636017--3636165 Score: 246
Period size: 74 Copynumber: 2.0 Consensus size: 75
3636007 AACTATCAAC
*
3636017 ATAATTATAAAAAAAAATTAATATTATTTTATTTTTATTTTATCTTATTT-AATAATAATTTTAA
1 ATAATTATAAAAAAAAATTAATATTATTTTATTTTTAATTTATCTTATTTAAATAATAATTTTAA
3636081 AAAATATATA
66 AAAATATATA
* *
3636091 ATAATTATAAAAAATATTTAATATTATTTTATTTTTAATTTATCTTATTTAAATAATAATTTTAA
1 ATAATTATAAAAAAAAATTAATATTATTTTATTTTTAATTTATCTTATTTAAATAATAATTTTAA
* *
3636156 TATATATATA
66 AAAATATATA
3636166 TATATATATT
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
74 47 0.68
75 22 0.32
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (75 bp):
ATAATTATAAAAAAAAATTAATATTATTTTATTTTTAATTTATCTTATTTAAATAATAATTTTAA
AAAATATATA
Found at i:3636107 original size:18 final size:20
Alignment explanation
Indices: 3636068--3636117 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
3636058 ATCTTATTTA
*
3636068 ATAATAATTTTAAAAAATAT
1 ATAATAATTATAAAAAATAT
3636088 ATAATAATTATAAAAAATAT
1 ATAATAATTATAAAAAATAT
*
3636108 TTAAT-ATTAT
1 ATAATAATTAT
3636118 TTTATTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 5 0.18
20 23 0.82
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAATAATTATAAAAAATAT
Found at i:3636138 original size:16 final size:17
Alignment explanation
Indices: 3636107--3636140 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
3636097 ATAAAAAATA
*
3636107 TTTAATATTATTTTATT
1 TTTAATATTATCTTATT
3636124 TTTAAT-TTATCTTATT
1 TTTAATATTATCTTATT
3636140 T
1 T
3636141 AAATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTAATATTATCTTATT
Found at i:3637796 original size:35 final size:35
Alignment explanation
Indices: 3637750--3637816 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
3637740 TTAGTTTAAA
*
3637750 TAATTTTATAAATA-ACATTATATTAAAAAATATTT
1 TAATTTAATAAATATA-ATTATATTAAAAAATATTT
* *
3637785 TAATTTAATAAATATATTTATATTATAAAATA
1 TAATTTAATAAATATAATTATATTAAAAAATA
3637817 GTTATTTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 27 0.96
36 1 0.04
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (35 bp):
TAATTTAATAAATATAATTATATTAAAAAATATTT
Found at i:3637815 original size:18 final size:17
Alignment explanation
Indices: 3637767--3637816 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
3637757 ATAAATAACA
*
3637767 TTATATTAAAAAATATT
1 TTATATTATAAAATATT
3637784 TTA-ATT-TAATAAATATAT
1 TTATATTAT-A-AAATAT-T
3637802 TTATATTATAAAATA
1 TTATATTATAAAATA
3637817 GTTATTTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 9
0.73 0.03 0.24
Matches are distributed among these distances:
16 4 0.15
17 9 0.33
18 9 0.33
19 4 0.15
20 1 0.04
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTATATTATAAAATATT
Found at i:3661420 original size:51 final size:49
Alignment explanation
Indices: 3661365--3661512 Score: 151
Period size: 51 Copynumber: 3.0 Consensus size: 49
3661355 GTAACCTCCT
* *
3661365 TGGTGGCGACCTCCTAGGTGGTAGAGGTGGCGGCGGCGACCTCCTTGGTGG
1 TGGTGGCGACCTCCTAGGTGGCAGAGGTGG-GGTGGCGACCTCC-TGGTGG
* * * *
3661416 TGGTGGTGACCTCCTTGGTGGCGGAGGT--GGTGGAGACCTCCT--TGG
1 TGGTGGCGACCTCCTAGGTGGCAGAGGTGGGGTGGCGACCTCCTGGTGG
*
3661461 TGGTGGCGACCTCCTAGGTGGGGGAGGAGGTGGTGGTGGCGACCTCCTGGTG
1 TGGTGGCGACCTCCTAGGT--GGCA-GAGGTGG-GGTGGCGACCTCCTGGTG
3661513 TCGGAGGTGG
Statistics
Matches: 78, Mismatches: 11, Indels: 14
0.76 0.11 0.14
Matches are distributed among these distances:
45 20 0.26
47 3 0.04
48 16 0.21
51 37 0.47
53 2 0.03
ACGTcount: A:0.09, C:0.21, G:0.47, T:0.23
Consensus pattern (49 bp):
TGGTGGCGACCTCCTAGGTGGCAGAGGTGGGGTGGCGACCTCCTGGTGG
Found at i:3661444 original size:21 final size:21
Alignment explanation
Indices: 3661390--3661444 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
3661380 AGGTGGTAGA
* *
3661390 GGTGGCGGCGGCGACCTCCTT
1 GGTGGCGGAGGTGACCTCCTT
* *
3661411 GGTGGTGGTGGTGACCTCCTT
1 GGTGGCGGAGGTGACCTCCTT
3661432 GGTGGCGGAGGTG
1 GGTGGCGGAGGTG
3661445 GTGGAGACCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.05, C:0.22, G:0.49, T:0.24
Consensus pattern (21 bp):
GGTGGCGGAGGTGACCTCCTT
Found at i:3661444 original size:27 final size:27
Alignment explanation
Indices: 3661414--3661581 Score: 104
Period size: 27 Copynumber: 6.4 Consensus size: 27
3661404 CCTCCTTGGT
3661414 GGTGGTGGTGACCTCCTTGGTGGCGGA
1 GGTGGTGGTGACCTCCTTGGTGGCGGA
*
3661441 GGTGGTGGAGACCTCC-T--T------
1 GGTGGTGGTGACCTCCTTGGTGGCGGA
* * *
3661459 GGTGGTGGCGACCTCCTAGGTGGGGGAGGA
1 GGTGGTGGTGACCTCCT---TGGTGGCGGA
*
3661489 GGTGGTGGTGGCGACCTCC-TGGTGTCGGA
1 GGTGGTGGT---GACCTCCTTGGTGGCGGA
* * **
3661518 GGTGGTGGGGACCTCTTTGGTGATGGA
1 GGTGGTGGTGACCTCCTTGGTGGCGGA
**
3661545 GGTGGTGGCAACCTCCTTGGTGGCGGA
1 GGTGGTGGTGACCTCCTTGGTGGCGGA
*
3661572 GTTGGTGGTG
1 GGTGGTGGTG
3661582 GTGGTCTCCT
Statistics
Matches: 106, Mismatches: 19, Indels: 32
0.68 0.12 0.20
Matches are distributed among these distances:
18 15 0.14
22 1 0.01
24 1 0.01
26 7 0.07
27 52 0.49
29 15 0.14
30 8 0.08
33 7 0.07
ACGTcount: A:0.10, C:0.17, G:0.48, T:0.25
Consensus pattern (27 bp):
GGTGGTGGTGACCTCCTTGGTGGCGGA
Found at i:3661464 original size:18 final size:18
Alignment explanation
Indices: 3661440--3661486 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
3661430 TTGGTGGCGG
3661440 AGGTGGTGGAGACCTCCT
1 AGGTGGTGGAGACCTCCT
* *
3661458 TGGTGGTGGCGACCTCCT
1 AGGTGGTGGAGACCTCCT
*
3661476 AGGTGGGGGAG
1 AGGTGGTGGAG
3661487 GAGGTGGTGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.19, G:0.47, T:0.21
Consensus pattern (18 bp):
AGGTGGTGGAGACCTCCT
Found at i:3661475 original size:45 final size:45
Alignment explanation
Indices: 3661336--3661493 Score: 142
Period size: 45 Copynumber: 3.4 Consensus size: 45
3661326 TGGCCTTCTT
3661336 GGTGGTGGAGGTGGTGGAGGTAACCTCC-T--TGGTGGCGACCTCCTA
1 GGTGGTGGAGGTGGTGGA-G--ACCTCCTTGGTGGTGGCGACCTCCTA
* * * * *
3661381 GGTGGTAGAGGTGGCGGCGGCGACCTCCTTGGTGGTGGTGGTGACCTCCTT
1 GGTGGTGGAGGT---GGTGGAGACCTCC-T--TGGTGGTGGCGACCTCCTA
*
3661432 GGTGGCGGAGGTGGTGGAGACCTCCTTGGTGGTGGCGACCTCCTA
1 GGTGGTGGAGGTGGTGGAGACCTCCTTGGTGGTGGCGACCTCCTA
* *
3661477 GGTGGGGGAGGAGGTGG
1 GGTGGTGGAGGTGGTGG
3661494 TGGTGGCGAC
Statistics
Matches: 91, Mismatches: 13, Indels: 18
0.75 0.11 0.15
Matches are distributed among these distances:
45 49 0.54
47 2 0.02
48 15 0.16
49 1 0.01
51 24 0.26
ACGTcount: A:0.11, C:0.19, G:0.47, T:0.23
Consensus pattern (45 bp):
GGTGGTGGAGGTGGTGGAGACCTCCTTGGTGGTGGCGACCTCCTA
Found at i:3661490 original size:48 final size:50
Alignment explanation
Indices: 3661365--3661496 Score: 148
Period size: 48 Copynumber: 2.7 Consensus size: 50
3661355 GTAACCTCCT
* * * * *
3661365 TGGTGGCGACCTCCTAGGTGGTAGAGGTGGCGGCGGCGACCTCCTTGGTGG
1 TGGTGGCGACCTCCTAGGTGGTGGAGGAGGTGGTGGAGACCTCCTT-GTGG
* *
3661416 TGGTGGTGACCTCCT---TGGTGGCGGAGGTGGTGGAGACCTCC-T-TGG
1 TGGTGGCGACCTCCTAGGTGGTGGAGGAGGTGGTGGAGACCTCCTTGTGG
*
3661461 TGGTGGCGACCTCCTAGGTGGGGGAGGAGGTGGTGG
1 TGGTGGCGACCTCCTAGGTGGTGGAGGAGGTGGTGG
3661497 TGGCGACCTC
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
45 17 0.25
47 1 0.01
48 36 0.53
51 14 0.21
ACGTcount: A:0.10, C:0.20, G:0.48, T:0.23
Consensus pattern (50 bp):
TGGTGGCGACCTCCTAGGTGGTGGAGGAGGTGGTGGAGACCTCCTTGTGG
Found at i:3663127 original size:37 final size:37
Alignment explanation
Indices: 3663060--3663321 Score: 158
Period size: 37 Copynumber: 7.4 Consensus size: 37
3663050 AAGATATTTG
* * * *
3663060 TTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAATT
1 TTGTTTTAAGGAAAACGGTCTCAAGAGAGACAAAATT
* *
3663097 TTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAA--
1 TTGTTTTAAGGAAAACGGTCTCAAGAGAGACAAAATT
* * * * *
3663132 ---TTTCAAGGGAAACGATCTC-A-A-AG--ATATTT
1 TTGTTTTAAGGAAAACGGTCTCAAGAGAGACAAAATT
* * * *
3663161 GTTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAATT
1 -TTGTTTTAAGGAAAACGGTCTCAAGAGAGACAAAATT
* *
3663199 TTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAA-T
1 TTGTTTTAAGGAAAACGGTCTCAAGAGAGACAAAATT
* * * *
3663235 TTATTTCAAGGGAAACTGTCTCAAGAGAGACAAAA--
1 TTGTTTTAAGGAAAACGGTCTCAAGAGAGACAAAATT
* * * * *
3663270 CTCTTCT-AGTGAAAACGGTCTCAAGCGAGAC-AAATC
1 TTGTTTTAAG-GAAAACGGTCTCAAGAGAGACAAAATT
*
3663306 TTGTTTTAAGAAAAAC
1 TTGTTTTAAGGAAAAC
3663322 AATCATGAGT
Statistics
Matches: 171, Mismatches: 39, Indels: 31
0.71 0.16 0.13
Matches are distributed among these distances:
27 2 0.01
29 2 0.01
30 1 0.01
31 1 0.01
32 14 0.08
33 17 0.10
34 6 0.04
35 21 0.12
36 43 0.25
37 60 0.35
38 4 0.02
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (37 bp):
TTGTTTTAAGGAAAACGGTCTCAAGAGAGACAAAATT
Found at i:3663148 original size:102 final size:102
Alignment explanation
Indices: 3663030--3663236 Score: 414
Period size: 102 Copynumber: 2.0 Consensus size: 102
3663020 GAGACAGACT
3663030 TTTCAAGGGAAACGATCTCAAAGATATTTGTTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAA
1 TTTCAAGGGAAACGATCTCAAAGATATTTGTTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAA
3663095 TTTTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAA
66 TTTTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAA
3663132 TTTCAAGGGAAACGATCTCAAAGATATTTGTTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAA
1 TTTCAAGGGAAACGATCTCAAAGATATTTGTTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAA
3663197 TTTTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAA
66 TTTTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAA
3663234 TTT
1 TTT
3663237 ATTTCAAGGG
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 105 1.00
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.29
Consensus pattern (102 bp):
TTTCAAGGGAAACGATCTCAAAGATATTTGTTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAA
TTTTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAA
Found at i:3663258 original size:36 final size:36
Alignment explanation
Indices: 3663060--3663269 Score: 177
Period size: 37 Copynumber: 6.0 Consensus size: 36
3663050 AAGATATTTG
* * *
3663060 TTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAATT
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-T
* **
3663097 TTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAA-
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
* **
3663132 ---TTTCAAGGGAAAC-GATCTC-A-A-AGA-TATTT
1 TTGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAAT
* * *
3663161 GTTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAATT
1 -TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-T
* **
3663199 TTGTTTTAAGAAAAACTGTCTCAAGAGAGACAAAAT
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
*
3663235 TTATTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
3663270 CTCTTCTAGT
Statistics
Matches: 134, Mismatches: 27, Indels: 25
0.72 0.15 0.13
Matches are distributed among these distances:
28 1 0.01
29 3 0.02
30 1 0.01
31 2 0.01
32 14 0.10
33 16 0.12
34 2 0.01
36 35 0.26
37 59 0.44
38 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (36 bp):
TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
Found at i:3663319 original size:35 final size:36
Alignment explanation
Indices: 3663174--3663319 Score: 129
Period size: 36 Copynumber: 4.1 Consensus size: 36
3663164 GTTTCAAGGG
* * *
3663174 AAACGGTCTTAAGGGAGACAAAATTTTGTTTTAAGAA
1 AAACGGTCTCAAGAGAGACAAAATCTTGTTTTAAG-A
* * * *
3663211 AAACTGTCTCAAGAGAGACAAAAT-TTATTTCAAGGG
1 AAACGGTCTCAAGAGAGACAAAATCTTGTTTTAA-GA
* * * *
3663247 AAACTGTCTCAAGAGAGACAAAA-C-TCTTCTAGTGA
1 AAACGGTCTCAAGAGAGACAAAATCTTGTTTTA-AGA
*
3663282 AAACGGTCTCAAGCGAGAC-AAATCTTGTTTTAAGA
1 AAACGGTCTCAAGAGAGACAAAATCTTGTTTTAAGA
3663317 AAA
1 AAA
3663320 ACAATCATGA
Statistics
Matches: 88, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
34 3 0.03
35 28 0.32
36 35 0.40
37 22 0.25
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.25
Consensus pattern (36 bp):
AAACGGTCTCAAGAGAGACAAAATCTTGTTTTAAGA
Found at i:3663773 original size:18 final size:18
Alignment explanation
Indices: 3663746--3663781 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
3663736 TGATGAATCC
* *
3663746 CCAAAGATGCCTCAATAT
1 CCAAAAATGCCCCAATAT
3663764 CCAAAAATGCCCCAATAT
1 CCAAAAATGCCCCAATAT
3663782 TTGATGTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.31, G:0.08, T:0.19
Consensus pattern (18 bp):
CCAAAAATGCCCCAATAT
Found at i:3664659 original size:19 final size:18
Alignment explanation
Indices: 3664635--3664686 Score: 50
Period size: 21 Copynumber: 2.6 Consensus size: 18
3664625 GTCCCTTTTC
3664635 TTTTTGATTTTTGCTCTTT
1 TTTTTG-TTTTTGCTCTTT
*
3664654 TTTTTGTTCTTGTTTCTCTTT
1 TTTTTG-T-TT-TTGCTCTTT
3664675 TTCTTTGTTTTT
1 TT-TTTGTTTTT
3664687 TTTTTTGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 9 0.32
20 4 0.14
21 11 0.39
22 4 0.14
ACGTcount: A:0.02, C:0.12, G:0.10, T:0.77
Consensus pattern (18 bp):
TTTTTGTTTTTGCTCTTT
Found at i:3664715 original size:16 final size:16
Alignment explanation
Indices: 3664670--3664722 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
3664660 TTCTTGTTTC
* *
3664670 TCTTTTTCTTTGTTTTT
1 TCTTTTGCTTT-TTTGT
*
3664687 TTTTTTGCTTTTTTGCT
1 TCTTTTGCTTTTTTG-T
3664704 TCTTTT-CTTTTTTGT
1 TCTTTTGCTTTTTTGT
3664719 TCTT
1 TCTT
3664723 GATTGGATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
15 5 0.16
16 11 0.35
17 15 0.48
ACGTcount: A:0.00, C:0.13, G:0.08, T:0.79
Consensus pattern (16 bp):
TCTTTTGCTTTTTTGT
Found at i:3665848 original size:8 final size:8
Alignment explanation
Indices: 3665813--3665850 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
3665803 AATGTAGATG
3665813 AAATGCAA
1 AAATGCAA
*
3665821 AAAGGCAA
1 AAATGCAA
3665829 AAATGC-A
1 AAATGCAA
3665836 AAATGCAA
1 AAATGCAA
*
3665844 GAATGCA
1 AAATGCA
3665851 TGAAATGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (8 bp):
AAATGCAA
Found at i:3668568 original size:15 final size:14
Alignment explanation
Indices: 3668540--3668579 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
3668530 AATAAACAAA
3668540 AAATATTATGATAAT
1 AAATATTAT-ATAAT
*
3668555 ATATATATATATAAT
1 AAATAT-TATATAAT
3668570 AAATATTATA
1 AAATATTATA
3668580 ACGAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 4 0.18
15 15 0.68
16 3 0.14
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
AAATATTATATAAT
Found at i:3668617 original size:16 final size:16
Alignment explanation
Indices: 3668596--3668633 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
3668586 AAAAATAATT
3668596 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
3668612 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
3668628 T-ATAAA
1 TAATAAA
3668634 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:3668827 original size:15 final size:15
Alignment explanation
Indices: 3668807--3668847 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
3668797 TTAATAGTAC
3668807 AATAATAATAAATAT
1 AATAATAATAAATAT
*
3668822 AATAATTATAAATAT
1 AATAATAATAAATAT
3668837 -ATATATAATAA
1 AATA-ATAATAA
3668848 CTTTAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 3 0.13
15 20 0.87
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AATAATAATAAATAT
Found at i:3669364 original size:37 final size:36
Alignment explanation
Indices: 3669321--3669422 Score: 156
Period size: 34 Copynumber: 2.9 Consensus size: 36
3669311 TTAGTAGAAC
3669321 TCTATCCTATTTTTAGGAGTTTGAATCCTAGCAAAAT
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAG-AAAAT
*
3669358 GT-TATCCTATTTTTAGAAGTTTGAATCCT--AAAAT
1 -TCTATCCTATTTTTAGGAGTTTGAATCCTAGAAAAT
3669392 TCTATCCTATTTTTAGGAGTTTGAATCCTAG
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAG
3669423 TATGACGAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 8
0.86 0.03 0.12
Matches are distributed among these distances:
33 1 0.02
34 31 0.53
37 26 0.44
38 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (36 bp):
TCTATCCTATTTTTAGGAGTTTGAATCCTAGAAAAT
Found at i:3670841 original size:21 final size:21
Alignment explanation
Indices: 3670817--3670917 Score: 82
Period size: 21 Copynumber: 4.7 Consensus size: 21
3670807 TGGCGGCGGC
3670817 GACCTCCTTGGTGGTGGTGGT
1 GACCTCCTTGGTGGTGGTGGT
*
3670838 GACCTCCTTGGTGGCGGAGGTGGTGGA
1 GACCTCCTTGGT------GGTGGTGGT
*
3670865 GACCTCC-T--TGGTGGTGGC
1 GACCTCCTTGGTGGTGGTGGT
* *
3670883 GACCTCCTTGGTGGCGGAGGT
1 GACCTCCTTGGTGGTGGTGGT
*
3670904 GACCTCCTAGGTGG
1 GACCTCCTTGGTGG
3670918 GGGAGGAGGT
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
18 15 0.23
19 1 0.02
21 32 0.49
24 1 0.02
26 1 0.02
27 15 0.23
ACGTcount: A:0.09, C:0.23, G:0.43, T:0.26
Consensus pattern (21 bp):
GACCTCCTTGGTGGTGGTGGT
Found at i:3670859 original size:27 final size:27
Alignment explanation
Indices: 3670829--3671018 Score: 101
Period size: 27 Copynumber: 6.4 Consensus size: 27
3670819 CCTCCTTGGT
3670829 GGTGGTGGTGACCTCCTTGGTGGCGGA
1 GGTGGTGGTGACCTCCTTGGTGGCGGA
* *
3670856 GGTGGTGGAGACCTCCTTGGTGGTGGCGA
1 GGTGGTGGTGACCTCCTTGGTGG-CG-GA
* * *
3670885 CCTCCTTGGTGGCGGAGGTGACCTCCTAGGTGGGGGAGGA
1 -------GGT---GGTGGTGACCTCCT---TGGTGGCGGA
*
3670925 GGTGGTGGTGGCGACCTCCTTGGTGTCGGA
1 GGTGGTGGT---GACCTCCTTGGTGGCGGA
* * **
3670955 GGTGGTGGGGACCTCTTTGGTGATGGA
1 GGTGGTGGTGACCTCCTTGGTGGCGGA
**
3670982 GGTGGTGGCAACCTCCTTGGTGGCGGA
1 GGTGGTGGTGACCTCCTTGGTGGCGGA
*
3671009 GTTGGTGGTG
1 GGTGGTGGTG
3671019 GTGGTCTCCT
Statistics
Matches: 123, Mismatches: 22, Indels: 36
0.68 0.12 0.20
Matches are distributed among these distances:
27 66 0.54
28 1 0.01
29 2 0.02
30 20 0.16
33 11 0.09
36 3 0.02
39 12 0.10
40 2 0.02
41 1 0.01
42 5 0.04
ACGTcount: A:0.09, C:0.18, G:0.47, T:0.25
Consensus pattern (27 bp):
GGTGGTGGTGACCTCCTTGGTGGCGGA
Found at i:3670879 original size:18 final size:18
Alignment explanation
Indices: 3670856--3670901 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
3670846 TGGTGGCGGA
3670856 GGTGGTGGAGACCTCCTT
1 GGTGGTGGAGACCTCCTT
*
3670874 GGTGGTGGCGACCTCCTT
1 GGTGGTGGAGACCTCCTT
*
3670892 GGTGGCGGAG
1 GGTGGTGGAG
3670902 GTGACCTCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.09, C:0.22, G:0.46, T:0.24
Consensus pattern (18 bp):
GGTGGTGGAGACCTCCTT
Found at i:3670890 original size:45 final size:45
Alignment explanation
Indices: 3670748--3670904 Score: 149
Period size: 45 Copynumber: 3.4 Consensus size: 45
3670738 TGGTGGCCTT
*
3670748 CTTGGTGGTGGAGGTGGTGGAGGTAACCTCC-T--TGGTGGCGACCTC
1 CTTGGTGGCGGAGGTGGTGGA-G--ACCTCCTTGGTGGTGGCGACCTC
* ** * * *
3670793 CTAGGTGGTAGAGGTGGCGGCGGCGACCTCCTTGGTGGTGGTGGTGACCTC
1 CTTGGTGGCGGAGGT---GGTGGAGACCTCC-T--TGGTGGTGGCGACCTC
3670844 CTTGGTGGCGGAGGTGGTGGAGACCTCCTTGGTGGTGGCGACCTC
1 CTTGGTGGCGGAGGTGGTGGAGACCTCCTTGGTGGTGGCGACCTC
3670889 CTTGGTGGCGGAGGTG
1 CTTGGTGGCGGAGGTG
3670905 ACCTCCTAGG
Statistics
Matches: 92, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
45 50 0.54
47 2 0.02
48 15 0.16
49 1 0.01
51 24 0.26
ACGTcount: A:0.10, C:0.20, G:0.45, T:0.25
Consensus pattern (45 bp):
CTTGGTGGCGGAGGTGGTGGAGACCTCCTTGGTGGTGGCGACCTC
Found at i:3670922 original size:21 final size:21
Alignment explanation
Indices: 3670804--3670923 Score: 66
Period size: 21 Copynumber: 5.6 Consensus size: 21
3670794 TAGGTGGTAG
* *
3670804 AGGTGGCGGCGGCGACCTCCT
1 AGGTGGCGGAGGTGACCTCCT
* * *
3670825 TGGTGGTGGTGGTGACCTCCT
1 AGGTGGCGGAGGTGACCTCCT
*
3670846 TGGTGGCGGAGGTGGTGGAGACCTCCT
1 AGGTGGCGGA---GGT---GACCTCCT
* * *
3670873 ---TGGTGGTGGCGACCTCCT
1 AGGTGGCGGAGGTGACCTCCT
*
3670891 TGGTGGCGGAGGTGACCTCCT
1 AGGTGGCGGAGGTGACCTCCT
*
3670912 AGGTGGGGGAGG
1 AGGTGGCGGAGG
3670924 AGGTGGTGGT
Statistics
Matches: 76, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
18 8 0.11
21 52 0.68
24 8 0.11
27 8 0.11
ACGTcount: A:0.09, C:0.22, G:0.47, T:0.23
Consensus pattern (21 bp):
AGGTGGCGGAGGTGACCTCCT
Found at i:3675559 original size:26 final size:25
Alignment explanation
Indices: 3675524--3675574 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
3675514 TGCCATATAC
*
3675524 TATTATATATAATACTACTATTATT
1 TATTATATATAATACTACTACTATT
*
3675549 TATTAATATATATTACTACTACTATT
1 TATT-ATATATAATACTACTACTATT
3675575 ATCATTATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (25 bp):
TATTATATATAATACTACTACTATT
Found at i:3675721 original size:23 final size:23
Alignment explanation
Indices: 3675679--3675722 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
3675669 TAATGTAATT
* *
3675679 TTATTATCACTCTTATTTATTAG
1 TTATTATCACTATTAATTATTAG
*
3675702 TTATTATTACTATTAATTATT
1 TTATTATCACTATTAATTATT
3675723 TTTATTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (23 bp):
TTATTATCACTATTAATTATTAG
Found at i:3675782 original size:13 final size:12
Alignment explanation
Indices: 3675695--3675789 Score: 54
Period size: 13 Copynumber: 7.6 Consensus size: 12
3675685 TCACTCTTAT
3675695 TTATTAGTTATTA
1 TTATTAGTT-TTA
*
3675708 TTACTA-TTAATTA
1 TTATTAGTT--TTA
* *
3675721 TTTTTATTTTTA
1 TTATTAGTTTTA
*
3675733 TTATTTTAGTATTCA
1 TTA--TTAGT-TTTA
3675748 TTATTA-TTGTTA
1 TTATTAGTT-TTA
3675760 TT-TTA-TTTTA
1 TTATTAGTTTTA
3675770 TTATTAGTATTTA
1 TTATTAGT-TTTA
3675783 TTATTAG
1 TTATTAG
3675790 CATAATAATT
Statistics
Matches: 66, Mismatches: 7, Indels: 18
0.73 0.08 0.20
Matches are distributed among these distances:
10 5 0.08
11 9 0.14
12 13 0.20
13 27 0.41
14 6 0.09
15 6 0.09
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.65
Consensus pattern (12 bp):
TTATTAGTTTTA
Found at i:3675805 original size:3 final size:3
Alignment explanation
Indices: 3675542--3675788 Score: 116
Period size: 3 Copynumber: 81.7 Consensus size: 3
3675532 ATAATACTAC
* * * * * *
3675542 TAT TATT TAT TAA TAT ATAT TAC TAC TAC TAT TAT CAT TAT TGT TAT
1 TAT TA-T TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * ** *
3675589 TGT TAT TAT TAT CAT T-T TAC TAT TGC T-T TAT TAT TAT TAT AAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
3675634 TCATT TAT TAT T-T TGT TAT TAT TAT AAT TAT TAT T-T AAT GTAAT T-T
1 T-A-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T-AT TAT
* * * * *
3675680 TAT TAT CAC TCT TATT TAT TAGT TAT TAT TAC TAT TAAT TAT TTT TAT
1 TAT TAT TAT TAT TA-T TAT TA-T TAT TAT TAT TAT T-AT TAT TAT TAT
* * *
3675728 TTT TAT TAT T-T TAG TAT TCAT TAT TAT TGT TAT T-T TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
*
3675771 TAT TAG TATT TAT TAT TA
1 TAT TAT TA-T TAT TAT TA
3675789 GCATAATAAT
Statistics
Matches: 182, Mismatches: 42, Indels: 40
0.69 0.16 0.15
Matches are distributed among these distances:
2 16 0.09
3 140 0.77
4 22 0.12
5 4 0.02
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:3676738 original size:237 final size:233
Alignment explanation
Indices: 3676323--3677091 Score: 911
Period size: 237 Copynumber: 3.3 Consensus size: 233
3676313 CAGATTCAAT
* * * *
3676323 TCCATCATAGAATGAGGTGGATCGTCATTTCCAATGGAAGGGTTCACAATGAGAAGAACTCATCC
1 TCCATCACAGAATGAGGTGGATCGACATTTCCAATGGAAGGGTTCATAATGAGAAGAACTCGTCC
3676388 GAAAAGG-GAAGAAAAGTTCATAATGAGAAGAATTTGTTCGACCTTTTACTCAAATCCATCACAG
66 GAAAAGGAGAAG--AAGTTCATAATGAGAAGAATTTGTTCGACCTTTTACTCAAATCCATCACAG
** * *
3676452 AAGGAGGTGGATCGACATTTCGAGTGGAAATGTTCATAATTG-GAAGAACTCATCCGAAGAGGGA
129 AAGGA-GTATATCGTCATTTCGAGT-GAAA-ATTCATAA-TGAGAAGAACTCATCCGAAGAGGGA
*
3676516 AGAGAAGTTCATAAT-G-AGAACTTGTTCAACCTTTTTTACTTAAA
190 AGAGAAGTTCATAATAGAAGAACTTGTTCGACC--TTTTACTTAAA
* *
3676560 TCCATCACATAATGAGGTGGATCGACATTTCCAATGGAAGGGTTTATAATGAGAAGAACTCGTCC
1 TCCATCACAGAATGAGGTGGATCGACATTTCCAATGGAAGGGTTCATAATGAGAAGAACTCGTCC
* *
3676625 GAAAATGGAGAAGAAGTTCATAATGAGAAGAATTTCTTCGACCTTTTACTTAAATCCATCACAGA
66 GAAAA-GGAGAAGAAGTTCATAATGAGAAGAATTTGTTCGACCTTTTACTCAAATCCATCACAGA
* * *
3676690 AGGACGTATATCGTCATTTTC-AGTAGAAGAATTCATAATGAAAAGAACTCGT-CGAATAGGGAA
130 AGGA-GTATATCGTCA-TTTCGAGT-GAA-AATTCATAATGAGAAGAACTCATCCGAAGAGGGAA
* *
3676753 GAGAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAATCAAA
191 GAGAAGTTCATAAT-AGAAGAACTTGTTCGACCTTTTACTTAAA
* * *
3676797 TCTATCACAGAATGAGGTGGATCAACATTTCCAGTGGAAGGGTTCATAAT---AAGAACTCGT-C
1 TCCATCACAGAATGAGGTGGATCGACATTTCCAATGGAAGGGTTCATAATGAGAAGAACTCGTCC
* * *
3676858 TAAAGAGG-GAAGATAAGTTCATAAT---AAGAACTTGTTCAACCTTTTTTACTCAAATCCATCA
66 GAAA-AGGAGAAG--AAGTTCATAATGAGAAGAATTTGTTCGACC--TTTTACTCAAATCCATCA
* * *
3676919 TAGAAGGA-TATGGATCGTCATTTCTAGTGAAAATGTTCATAATGAGAAGAACTCATCCGAAGAA
126 CAGAAGGAGTAT--ATCGTCATTTCGAGTGAAAA--TTCATAATGAGAAGAACTCATCCGAAGAG
* * *
3676983 GGAAGACAAGTTCTTAATGAGAAGAATTTGTTCGACCTTTTACTTAAA
187 GGAAGAGAAGTTCATAAT-AGAAGAACTTGTTCGACCTTTTACTTAAA
* * * *
3677031 TCCATCACAGAAAGAGGTGGATCGACATTTCCAATGAAAGAGTTCATAATGAAAAGAACTC
1 TCCATCACAGAATGAGGTGGATCGACATTTCCAATGGAAGGGTTCATAATGAGAAGAACTC
3677092 ATTCGAAGTG
Statistics
Matches: 464, Mismatches: 46, Indels: 44
0.84 0.08 0.08
Matches are distributed among these distances:
231 18 0.04
232 11 0.02
233 59 0.13
234 114 0.25
236 26 0.06
237 210 0.45
238 8 0.02
239 18 0.04
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (233 bp):
TCCATCACAGAATGAGGTGGATCGACATTTCCAATGGAAGGGTTCATAATGAGAAGAACTCGTCC
GAAAAGGAGAAGAAGTTCATAATGAGAAGAATTTGTTCGACCTTTTACTCAAATCCATCACAGAA
GGAGTATATCGTCATTTCGAGTGAAAATTCATAATGAGAAGAACTCATCCGAAGAGGGAAGAGAA
GTTCATAATAGAAGAACTTGTTCGACCTTTTACTTAAA
Found at i:3677069 original size:119 final size:119
Alignment explanation
Indices: 3676318--3677099 Score: 822
Period size: 119 Copynumber: 6.6 Consensus size: 119
3676308 TCTTACAGAT
* * * * * * *
3676318 TCAATTCCATCATAGAATGAGGTGGATCGTCATTTCCAATGGAAGGGTTCACAATGAGAAGAACT
1 TCAAATCCATCACAGAAGGAGGTGGATCGACATTTCCAGTGGAAAGGTTCATAATGAGAAGAACT
* *
3676383 CATCCGAA-AAGGGAAGAAAAGTTCATAATGAGAAGAATTTGTTCGACCTTTTAC
66 CATCCGAAGAA-GGAAGAGAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAC
* *
3676437 TCAAATCCATCACAGAAGGAGGTGGATCGACATTTCGAGTGGAAATGTTCATAATTG-GAAGAAC
1 TCAAATCCATCACAGAAGGAGGTGGATCGACATTTCCAGTGGAAAGGTTCATAA-TGAGAAGAAC
* *
3676501 TCATCCGAAGAGGGAAGAGAAGTTCATAAT--G-AGAACTTGTTCAACCTTTTTTAC
65 TCATCCGAAGAAGGAAGAGAAGTTCATAATGAGAAGAACTTGTTCGACC--TTTTAC
* * * * * *
3676555 TTAAATCCATCACATAATGAGGTGGATCGACATTTCCAATGGAAGGGTTTATAATGAGAAGAACT
1 TCAAATCCATCACAGAAGGAGGTGGATCGACATTTCCAGTGGAAAGGTTCATAATGAGAAGAACT
* * *
3676620 CGTCCGAA-AATGG-AGAAGAAGTTCATAATGAGAAGAATTTCTTCGACCTTTTAC
66 CATCCGAAGAA-GGAAG-AGAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAC
* * ** * * * * *
3676674 TTAAATCCATCACAGAAGGACGTATATCGTCATTTTCAGTAG-AAGAATTCATAATGAAAAGAAC
1 TCAAATCCATCACAGAAGGAGGTGGATCGACATTTCCAGTGGAAAG-GTTCATAATGAGAAGAAC
* * * *
3676738 TCGT-CGAATAGGGAAGAGAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAA
65 TCATCCGAAGAAGGAAGAGAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAC
* * * *
3676792 TCAAATCTATCACAGAATGAGGTGGATCAACATTTCCAGTGGAAGGGTTCATAAT---AAGAACT
1 TCAAATCCATCACAGAAGGAGGTGGATCGACATTTCCAGTGGAAAGGTTCATAATGAGAAGAACT
* ** * * *
3676854 CGTCTAAAGAGGGAAGATAAGTTCATAAT---AAGAACTTGTTCAACCTTTTTTAC
66 CATCCGAAGAAGGAAGAGAAGTTCATAATGAGAAGAACTTGTTCGACC--TTTTAC
* ** * * * *
3676907 TCAAATCCATCATAGAAGGATATGGATCGTCATTTCTAGTGAAAATGTTCATAATGAGAAGAACT
1 TCAAATCCATCACAGAAGGAGGTGGATCGACATTTCCAGTGGAAAGGTTCATAATGAGAAGAACT
* * *
3676972 CATCCGAAGAAGGAAGACAAGTTCTTAATGAGAAGAATTTGTTCGACCTTTTAC
66 CATCCGAAGAAGGAAGAGAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAC
* * * *
3677026 TTAAATCCATCACAGAAAGAGGTGGATCGACATTTCCAAT-GAAAGAGTTCATAATGAAAAGAAC
1 TCAAATCCATCACAGAAGGAGGTGGATCGACATTTCCAGTGGAAAG-GTTCATAATGAGAAGAAC
*
3677090 TCATTCGAAG
65 TCATCCGAAG
3677100 TGAGCGAAAA
Statistics
Matches: 547, Mismatches: 92, Indels: 48
0.80 0.13 0.07
Matches are distributed among these distances:
113 15 0.03
115 59 0.11
116 34 0.06
117 6 0.01
118 198 0.36
119 205 0.37
120 4 0.01
121 26 0.05
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.27
Consensus pattern (119 bp):
TCAAATCCATCACAGAAGGAGGTGGATCGACATTTCCAGTGGAAAGGTTCATAATGAGAAGAACT
CATCCGAAGAAGGAAGAGAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAC
Found at i:3677131 original size:352 final size:354
Alignment explanation
Indices: 3676323--3677118 Score: 1014
Period size: 352 Copynumber: 2.2 Consensus size: 354
3676313 CAGATTCAAT
* * * * * * *
3676323 TCCATCATAGAATGAGGTGGATCGTCATTTCCAATGGAAGGGTTCACAATGAGAAGAACTCATCC
1 TCCATCACAGAAAGAGGTGGATCGTCATTTCCAATGAAAGAGTTCATAATGAAAAGAACTCATTC
* * *
3676388 GAAAAGGGA-AGAAAAGTTCATAATGAGAAGAATTTGTTCGACCTTTTACTCAAATCCATCACAG
66 G--AAGTGAGAGAAAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAATCAAATCCATCACAG
* * * *
3676452 AAGGAGGTGGATCGACATTTCGAGTGGAAATGTTCATAATTGGAAGAACTCATCCGAAGAGGGAA
129 AAGGAGGTGGATCAACATTTCCAGTGGAAAGGTTCATAATT-GAAGAACTCATCCAAAGAGGGAA
* * * * *
3676517 GAGAAGTTCATAATGAGAACTTGTTCAACCTTTTTTACTTAAATCCATCACATAATGAGGTGGAT
193 GAGAAGTTCATAATAAGAACTTGTTCAACCTTTTTTACTCAAATCCATCACAGAAGGAGATGGAT
* * * * *
3676582 CGACATTTCCAATGGAAGGGTTTATAATGAGAAGAACTCGTCCGAAAATGGAGAAGAAGTTCATA
258 CGACATTTCCAATGAAAAGGTTCATAATGAGAAGAACTCATCCGAAAATGGAGAACAAGTTCATA
3676647 ATGAGAAGAATTTCTTCGACCTTTTACTTAAA
323 ATGAGAAGAATTTCTTCGACCTTTTACTTAAA
* * ** * * * *
3676679 TCCATCACAGAAGGACGTATATCGTCATTTTCAGT-AGAAGAATTCATAATGAAAAGAACTC-GT
1 TCCATCACAGAAAGAGGTGGATCGTCATTTCCAATGA-AAGAGTTCATAATGAAAAGAACTCATT
* * *
3676742 CGAA-TAGGGAAGAGAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAATCAAATCTATCACA
65 CGAAGT-GAG-AGAAAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAATCAAATCCATCACA
* * * *
3676806 GAATGAGGTGGATCAACATTTCCAGTGGAAGGGTTCATAA-T-AAGAACTCGTCTAAAGAGGGAA
128 GAAGGAGGTGGATCAACATTTCCAGTGGAAAGGTTCATAATTGAAGAACTCATCCAAAGAGGGAA
* * *
3676869 GATAAGTTCATAATAAGAACTTGTTCAACCTTTTTTACTCAAATCCATCATAGAAGGATATGGAT
193 GAGAAGTTCATAATAAGAACTTGTTCAACCTTTTTTACTCAAATCCATCACAGAAGGAGATGGAT
* * * * *
3676934 CGTCATTTCTAGTGAAAATGTTCATAATGAGAAGAACTCATCCGAAGAA-GGA-AGACAAGTTCT
258 CGACATTTCCAATGAAAAGGTTCATAATGAGAAGAACTCATCCGAA-AATGGAGA-ACAAGTTCA
*
3676997 TAATGAGAAGAATTTGTTCGACCTTTTACTTAAA
321 TAATGAGAAGAATTTCTTCGACCTTTTACTTAAA
*
3677031 TCCATCACAGAAAGAGGTGGATCGACATTTCCAATGAAAGAGTTCATAATGAAAAGAACTCATTC
1 TCCATCACAGAAAGAGGTGGATCGTCATTTCCAATGAAAGAGTTCATAATGAAAAGAACTCATTC
*
3677096 GAAGTGAGCGAAAAGTTCATAAT
66 GAAGTGAGAGAAAAGTTCATAAT
3677119 AAAAATAACT
Statistics
Matches: 372, Mismatches: 59, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
351 1 0.00
352 221 0.59
353 13 0.03
354 2 0.01
355 87 0.23
356 48 0.13
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (354 bp):
TCCATCACAGAAAGAGGTGGATCGTCATTTCCAATGAAAGAGTTCATAATGAAAAGAACTCATTC
GAAGTGAGAGAAAAGTTCATAATGAGAAGAACTTGTTCGACCTTTTAATCAAATCCATCACAGAA
GGAGGTGGATCAACATTTCCAGTGGAAAGGTTCATAATTGAAGAACTCATCCAAAGAGGGAAGAG
AAGTTCATAATAAGAACTTGTTCAACCTTTTTTACTCAAATCCATCACAGAAGGAGATGGATCGA
CATTTCCAATGAAAAGGTTCATAATGAGAAGAACTCATCCGAAAATGGAGAACAAGTTCATAATG
AGAAGAATTTCTTCGACCTTTTACTTAAA
Found at i:3677277 original size:3 final size:3
Alignment explanation
Indices: 3677264--3677432 Score: 140
Period size: 3 Copynumber: 57.0 Consensus size: 3
3677254 ATAATACTAA
*
3677264 TAT TAT T-T TAT TAT TAT TAT TAT AATT TAT TAT T-T TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * * *
3677308 TAT TAT TAT TAT T-T GAT GTAAT T-T TAT TAT TAC TCT TATT TAG TCT
1 TAT TAT TAT TAT TAT TAT -T-AT TAT TAT TAT TAT TAT TA-T TAT TAT
3677354 TATT TAT TAGT TAT TAT T-T TAT T-T TAT TAT T-T TAT T-T TAT T-T
1 TA-T TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
3677396 TAT TAT TAG TATT TAT TAT TAT TAT AAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
3677433 GATTTCAATA
Statistics
Matches: 134, Mismatches: 16, Indels: 32
0.74 0.09 0.18
Matches are distributed among these distances:
2 17 0.13
3 101 0.75
4 14 0.10
5 2 0.01
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:3677410 original size:13 final size:13
Alignment explanation
Indices: 3677266--3677432 Score: 122
Period size: 13 Copynumber: 13.0 Consensus size: 13
3677256 AATACTAATA
3677266 TTATT-TTATTA-
1 TTATTATTATTAT
*
3677277 TTATTATTATAAT
1 TTATTATTATTAT
3677290 TTATTATT-TTA-
1 TTATTATTATTAT
3677301 TTATTATTATTA-
1 TTATTATTATTAT
*
3677313 TTATTATTTGATGTAA
1 TTATTA-TT-AT-TAT
3677329 TT-TTATTATTACT
1 TTATTATTATTA-T
* *
3677342 CTTATTTAGTCTTAT
1 -TTA-TTATTATTAT
3677357 TTATTAGTTATTATT
1 TTATTA-TTATTA-T
3677372 TTATT-TTATTA-
1 TTATTATTATTAT
3677383 TT-TTATT-TTATT
1 TTATTATTATTA-T
*
3677395 TTATTATTAGTAT
1 TTATTATTATTAT
3677408 TTATTATTATTA-
1 TTATTATTATTAT
*
3677420 TAATTATTATTAT
1 TTATTATTATTAT
3677433 GATTTCAATA
Statistics
Matches: 127, Mismatches: 10, Indels: 36
0.73 0.06 0.21
Matches are distributed among these distances:
10 5 0.04
11 17 0.13
12 31 0.24
13 38 0.30
14 15 0.12
15 12 0.09
16 9 0.07
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (13 bp):
TTATTATTATTAT
Found at i:3677447 original size:2 final size:2
Alignment explanation
Indices: 3677440--3677475 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
3677430 TATGATTTCA
3677440 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3677476 GTATGTATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3679208 original size:22 final size:21
Alignment explanation
Indices: 3679160--3679208 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
3679150 CGGGAAAAAT
*
3679160 TCTAATTTTTAATCGCTAACT
1 TCTAATTTTTAATCGCTAACG
**
3679181 TGCTAATTTTTTAATTTCTAACG
1 T-CTAA-TTTTTAATCGCTAACG
3679204 TCTAA
1 TCTAA
3679209 CTTAAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 8 0.35
23 14 0.61
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.49
Consensus pattern (21 bp):
TCTAATTTTTAATCGCTAACG
Found at i:3705255 original size:20 final size:20
Alignment explanation
Indices: 3705232--3705283 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
3705222 AACGCGATCC
3705232 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
3705252 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
3705272 CCAAAATCGCAA
1 CCAGAATCGCAA
3705284 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:3705364 original size:20 final size:20
Alignment explanation
Indices: 3705339--3705532 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
3705329 GATTTTCCAT
* *
3705339 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
3705359 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
3705379 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
3705399 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
3705419 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
3705439 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
3705459 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
3705479 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
3705500 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
3705520 AATCGCAACGCGA
1 AATCGCAACGCGA
3705533 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:3705384 original size:40 final size:39
Alignment explanation
Indices: 3705335--3705532 Score: 200
Period size: 40 Copynumber: 5.0 Consensus size: 39
3705325 TTGCGATTTT
* ** *
3705335 CCAT-AATCGCAACGCGAATATGAAAATCGCAACGCGAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
* *
3705373 CACATAAATCGCAACGCGTATCCGTAAATCGCAACGTGTAT
1 C-CATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* ** * *
3705414 CCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTAT
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* * **
3705454 CCGTATATCGCAACGCGTATCCGTAAATCGCAACGATAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
*
3705493 TACATAAAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 -CCAT-AAATCGCAACGCGTATCCGTAAATCGCAACGCGA
3705533 TATTTAAAGC
Statistics
Matches: 132, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 94 0.71
41 33 0.25
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (39 bp):
CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
Found at i:3705422 original size:60 final size:60
Alignment explanation
Indices: 3705339--3705531 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
3705329 GATTTTCCAT
* ** * *
3705339 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
3705399 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* **
3705459 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
3705520 AATCGCAACGCG
1 AATCGCAACGCG
3705532 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 80 0.72
61 31 0.28
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:3705952 original size:33 final size:33
Alignment explanation
Indices: 3705913--3705983 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
3705903 TTCACTTAGA
*
3705913 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
3705946 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
3705979 TTTCA
1 TTTCA
3705984 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:3706123 original size:14 final size:14
Alignment explanation
Indices: 3706104--3706158 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
3706094 AGAATGACTG
3706104 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
3706118 TCGCAACGCGAAATGAAAA
1 TCGCAA--CG--A-GAGAA
3706137 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
3706151 TCGCAACG
1 TCGCAACG
3706159 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.42, C:0.24, G:0.25, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:3706141 original size:33 final size:33
Alignment explanation
Indices: 3706104--3706174 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
3706094 AGAATGACTG
**
3706104 TCGCAACGAGAGAATCGCAACGCGAAATGAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
3706137 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
3706170 TCGCA
1 TCGCA
3706175 TTGCGATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:3706192 original size:19 final size:19
Alignment explanation
Indices: 3706170--3706267 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
3706160 GAAACCAAAA
*
3706170 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
3706189 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
3706203 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
3706222 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
3706236 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
3706255 TCGCGTTGCGATT
1 TCGCGTTGCGATT
3706268 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:3706211 original size:14 final size:14
Alignment explanation
Indices: 3706192--3706281 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
3706182 TTTCATTTCG
3706192 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
3706206 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
3706225 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
3706239 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
3706256 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
3706272 CGTTGCGATT
1 CGTTGCGATT
3706282 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:3706217 original size:33 final size:33
Alignment explanation
Indices: 3706175--3706289 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
3706165 CAAAATCGCA
3706175 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
3706208 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
3706241 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
3706274 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
3706290 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:3708274 original size:93 final size:93
Alignment explanation
Indices: 3707980--3708442 Score: 873
Period size: 92 Copynumber: 5.0 Consensus size: 93
3707970 TAGATTGCTT
*
3707980 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
3708045 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
3708073 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
3708137 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
3708165 AGTAAATTTGTTCGGTTGATGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
3708230 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
3708258 AGTAAATTTGTTCGGTTGCTGCCAA-T-TGCTAAACTGTGTATTCTTTAACACTGTG-AATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
3708320 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
3708348 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTC-TTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
3708412 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
3708440 AGT
1 AGT
3708443 TTCAATTTGC
Statistics
Matches: 363, Mismatches: 3, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
90 60 0.17
91 41 0.11
92 147 0.40
93 115 0.32
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:3708514 original size:19 final size:19
Alignment explanation
Indices: 3708474--3708602 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
3708464 TAGTTTACTT
* *
3708474 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
3708494 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
3708513 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
3708532 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
3708546 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
3708565 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
3708579 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
3708598 TCGCA
1 TCGCA
3708603 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:3708553 original size:33 final size:32
Alignment explanation
Indices: 3708510--3708602 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
3708500 CGCGAAACCA
**
3708510 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
3708542 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
3708575 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
3708603 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:3708600 original size:52 final size:52
Alignment explanation
Indices: 3708474--3708602 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
3708464 TAGTTTACTT
**
3708474 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
3708526 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
3708579 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
3708603 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:3708620 original size:19 final size:19
Alignment explanation
Indices: 3708598--3708732 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
3708588 GAAACCAAAA
*
3708598 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
3708617 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
3708633 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
3708650 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
*
3708666 T--CGTTGCGATTTGCATT
1 TCGCGTTGCGATTTTCATT
**
3708683 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
3708702 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
3708722 TCGTGTTGCGA
1 TCGCGTTGCGA
3708733 AAGTAAACTA
Statistics
Matches: 93, Mismatches: 12, Indels: 21
0.74 0.10 0.17
Matches are distributed among these distances:
14 15 0.16
16 10 0.11
17 11 0.12
19 45 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:3708639 original size:14 final size:14
Alignment explanation
Indices: 3708620--3708676 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
3708610 TTTCATTTCG
3708620 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
3708634 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
3708651 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
3708667 CGTTGCGATT
1 CGTTGCGATT
3708677 TGCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:3708645 original size:33 final size:33
Alignment explanation
Indices: 3708603--3708695 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
3708593 CAAAATCGCA
*
3708603 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
3708636 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
3708669 TTGCGATTTGCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
3708696 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:3710667 original size:13 final size:14
Alignment explanation
Indices: 3710642--3710676 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
3710632 ATTGTTTAAT
3710642 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
3710656 TGATTTGT-AAAGT
1 TGATTTGTAAAAGA
3710669 TGATTTGT
1 TGATTTGT
3710677 GTAATTGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:3710797 original size:19 final size:19
Alignment explanation
Indices: 3710781--3710881 Score: 142
Period size: 19 Copynumber: 5.6 Consensus size: 19
3710771 AAAAATGACT
3710781 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
3710800 ATCGCAATGCGAAATG-AA
1 ATCGCAATGCGAAATGAAA
*
3710818 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
3710832 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
3710851 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
3710871 ATCGCAATGCG
1 ATCGCAATGCG
3710882 TTTATAATTT
Statistics
Matches: 73, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
13 1 0.01
14 9 0.12
16 4 0.05
18 10 0.14
19 30 0.41
20 19 0.26
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:3710930 original size:33 final size:34
Alignment explanation
Indices: 3710888--3711176 Score: 230
Period size: 33 Copynumber: 8.5 Consensus size: 34
3710878 TGCGTTTATA
3710888 ATTTCGCATTGCGATTATCTCG-TTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGATTGCGATTTTC
*
3710921 ATTTCGCATTGCGATTTCATTTCGCATTGCGA--TTC
1 ATTTCGCATTGCGA-TT-ATCTCG-ATTGCGATTTTC
*
3710956 -TTTCG--TTGCGATTTTCATTTCGCATTGCGA--TTC
1 ATTTCGCATTGCGA--TT-ATCTCG-ATTGCGATTTTC
* *
3710989 -TTTCG--TTGCGATTTTCATTCGCATTGCGATTTTA
1 ATTTCGCATTGCGATTATC--TCG-ATTGCGATTTTC
* *
3711023 ATTTCGCATTGCGATTCTGTCG-TTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGATTGCGATTTTC
*
3711056 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGA--TT-ATCTCG-ATTGCGATTTTC
*
3711094 ATTTCGCATTGCGATTCTCTCG-TTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGATTGCGATTTTC
* *
3711127 ATTTCCGCATTGCGATTTTCAT-G-TTGGGATTTTC
1 ATTT-CGCATTGCGATTATC-TCGATTGCGATTTTC
*
3711161 ATTTCGCGTTGCGATT
1 ATTTCGCATTGCGATT
3711177 GTATTTTCCG
Statistics
Matches: 223, Mismatches: 14, Indels: 38
0.81 0.05 0.14
Matches are distributed among these distances:
30 1 0.00
31 2 0.01
32 17 0.08
33 96 0.43
34 38 0.17
35 23 0.10
36 6 0.03
37 15 0.07
38 25 0.11
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (34 bp):
ATTTCGCATTGCGATTATCTCGATTGCGATTTTC
Found at i:3710934 original size:19 final size:19
Alignment explanation
Indices: 3710910--3711176 Score: 291
Period size: 19 Copynumber: 15.4 Consensus size: 19
3710900 GATTATCTCG
3710910 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
3710929 TTGCGA-TTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
3710947 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
3710961 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
3710980 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
3710994 TTGCGATTTTCA-TTCGCA
1 TTGCGATTTTCATTTCGCA
*
3711012 TTGCGATTTTAATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
3711031 TTGCGA--TTC-TGTCG--
1 TTGCGATTTTCATTTCGCA
3711045 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
3711064 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
3711083 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
3711102 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
3711116 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
3711136 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
3711150 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
3711169 TTGCGATT
1 TTGCGATT
3711177 GTATTTTCCG
Statistics
Matches: 213, Mismatches: 8, Indels: 54
0.77 0.03 0.20
Matches are distributed among these distances:
14 35 0.16
16 36 0.17
17 23 0.11
18 32 0.15
19 75 0.35
20 12 0.06
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:3710949 original size:51 final size:51
Alignment explanation
Indices: 3710888--3711144 Score: 296
Period size: 51 Copynumber: 5.0 Consensus size: 51
3710878 TGCGTTTATA
3710888 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTC
* *
3710939 ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGA-TTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTC
* *
3710989 -TTTCG--TTGCGATTTTCATTCGCATTGCGATTTTAATTTCGCATTGCGA-TTC
1 ATTTCGCATTGCGATTATC--TCG--TTGCGATTTTCATTTCGCATTGCGATTTC
* *
3711040 -TGTCG--TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGA--TT-ATCTCG--TTGCGATTTTCATTTCGCATTGCGA-TTTC
*
3711094 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTT
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTT-CGCATTGCGATTT
3711145 TCATGTTGGG
Statistics
Matches: 181, Mismatches: 12, Indels: 25
0.83 0.06 0.11
Matches are distributed among these distances:
47 9 0.05
49 8 0.04
50 3 0.02
51 82 0.45
52 47 0.26
53 12 0.07
54 8 0.04
55 6 0.03
57 6 0.03
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.46
Consensus pattern (51 bp):
ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTC
Found at i:3711029 original size:84 final size:85
Alignment explanation
Indices: 3710888--3711109 Score: 349
Period size: 84 Copynumber: 2.6 Consensus size: 85
3710878 TGCGTTTATA
* * *
3710888 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGA-TTTCATTTCGCATTGCG
1 ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTAATTTCGCATTGCG
*
3710952 ATTCTTTCGTTGCGATTTTC
66 ATTCTGTCGTTGCGATTTTC
3710972 ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCA-TTCGCATTGCGATTTTAATTTCGCATTGCG
1 ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTAATTTCGCATTGCG
3711036 ATTCTGTCGTTGCGATTTTC
66 ATTCTGTCGTTGCGATTTTC
3711056 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATT
1 ATTTCGCATTGCGA--TTC-TTTCG--TTGCGATTTTCATTTCGCATTGCGATT
3711110 CTCTCGTTGC
Statistics
Matches: 127, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
83 12 0.09
84 81 0.64
86 3 0.02
87 5 0.04
89 12 0.09
90 14 0.11
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (85 bp):
ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTAATTTCGCATTGCG
ATTCTGTCGTTGCGATTTTC
Found at i:3713672 original size:24 final size:24
Alignment explanation
Indices: 3713638--3713684 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
3713628 CTGAAACATC
3713638 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
3713662 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
3713685 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:3714392 original size:20 final size:20
Alignment explanation
Indices: 3714364--3714569 Score: 265
Period size: 20 Copynumber: 10.3 Consensus size: 20
3714354 AAATTTCAGT
* * *
3714364 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACTC
3714384 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACTC
* *
3714404 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACTC
3714424 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACTC
*
3714444 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACTC
3714464 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACTC
*
3714484 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACTC
*
3714504 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACTC
*
3714524 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACTC
* *
3714544 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATACTC
3714564 GTTGCG
1 GTTGCG
3714570 CGTTGCGATT
Statistics
Matches: 167, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
19 5 0.03
20 158 0.95
21 4 0.02
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACTC
Found at i:3714720 original size:20 final size:20
Alignment explanation
Indices: 3714695--3714746 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
3714685 TTCAAGCGCG
*
3714695 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
3714715 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
3714735 TTGCGATTCTGG
1 TTGCGATTCTGG
3714747 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:3723205 original size:22 final size:22
Alignment explanation
Indices: 3723180--3723226 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
3723170 TATATTATTT
3723180 AAATTATTTACGTTTATGTGTA
1 AAATTATTTACGTTTATGTGTA
3723202 AAATTATTTACGTTTATGTGTA
1 AAATTATTTACGTTTATGTGTA
3723224 AAA
1 AAA
3723227 AATTTATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (22 bp):
AAATTATTTACGTTTATGTGTA
Done.