genome.fa.s792.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000792.1 Hibiscus syriacus cultivar Beakdansim tig00001534_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94138

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24829--24881	14	4.1	14	79	18	69	56	16	13	13	1.67
24829--24894	24	2.7	24	90	4	105	54	16	13	15	1.71
25265--25315	15	3.3	15	78	10	59	62	0	1	35	1.06
25437--25469	16	2.1	16	88	11	50	36	0	3	60	1.12
26696--26750	16	3.4	16	89	0	92	58	21	10	9	1.60
30262--30318	29	2.0	29	96	0	105	15	38	26	19	1.92
30300--30363	32	2.0	32	96	0	119	26	32	15	25	1.95
30901--30944	21	2.1	21	86	0	61	29	2	15	52	1.55
30921--30974	28	1.9	28	96	0	99	27	1	14	55	1.50
31474--31517	23	2.0	23	81	4	54	40	0	9	50	1.34
34669--34856	49	3.8	49	97	0	340	43	0	10	46	1.37
34843--34885	17	2.5	17	85	7	52	55	0	2	41	1.12
35067--35109	12	3.7	11	84	9	59	51	0	4	44	1.22
35059--35441	26	15.8	23	73	15	151	45	1	9	44	1.42
35096--35161	18	3.9	15	76	20	51	37	0	15	46	1.46
35122--35386	12	22.0	11	69	19	92	44	1	10	43	1.47
35105--35164	18	3.3	18	80	13	77	38	0	15	46	1.45
35087--35160	37	2.1	35	87	5	103	37	0	14	47	1.45
35149--35441	26	11.6	26	79	9	250	45	1	8	44	1.42
35149--35441	98	2.9	100	82	8	337	45	1	8	44	1.42
35131--35362	124	1.9	120	87	7	342	44	1	9	43	1.46
35149--35454	49	6.1	49	75	13	241	45	1	8	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35335--35380	9	5.2	9	81	5	58	52	0	10	36	1.37
35558--35602	24	1.9	24	86	4	65	40	2	4	53	1.33
35569--35610	17	2.5	17	80	0	57	40	0	2	57	1.12
37866--37912	16	3.0	16	81	9	53	57	8	0	34	1.29
37955--38078	29	4.4	29	73	20	104	46	10	0	41	1.44
37963--38010	22	2.2	21	92	3	78	41	14	0	43	1.45
37983--38032	15	3.3	16	72	13	52	44	12	0	44	1.41
38358--38436	32	2.3	32	82	8	95	46	7	0	45	1.31
38495--38603	46	2.4	46	95	3	193	51	19	0	28	1.53
38815--38850	11	3.2	11	84	7	54	38	19	22	19	1.93
41210--41248	2	19.5	2	100	0	78	51	0	0	48	1.00
42334--42454	27	4.6	26	71	17	88	44	0	1	52	1.16
42396--42500	30	3.5	29	79	16	99	45	0	1	52	1.11
42436--42499	28	2.3	26	84	12	83	48	0	1	50	1.10
42646--42683	20	2.0	19	90	10	60	63	0	0	36	0.95
42830--42900	20	3.5	20	96	0	124	35	12	9	42	1.76
42830--42909	40	2.0	40	87	0	115	35	13	8	42	1.76
42883--42955	30	2.5	30	97	2	139	31	20	6	41	1.79
42883--42955	15	4.9	15	83	3	103	31	20	6	41	1.79
44548--44593	24	1.9	24	86	0	65	41	19	19	19	1.91
45527--45577	25	2.1	24	82	13	61	25	15	13	45	1.83
45691--45729	17	2.3	17	86	0	51	64	0	12	23	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45873--45918	18	2.6	17	82	3	56	65	10	10	13	1.48
50707--50767	31	2.0	31	83	6	79	40	1	3	54	1.27
51450--51502	6	9.2	6	93	6	92	33	49	16	0	1.47
52007--52045	6	6.5	6	100	0	78	0	15	51	33	1.44
52556--52635	31	2.6	30	80	11	90	51	3	2	42	1.33
53450--53485	3	12.0	3	93	0	63	0	30	0	69	0.89
61012--61062	18	2.8	18	84	0	75	21	21	29	27	1.99
69366--69419	28	1.9	28	88	7	83	33	7	5	53	1.52
70754--70806	25	2.1	25	96	0	97	26	9	20	43	1.82
71929--72319	186	2.1	185	90	1	615	42	2	8	46	1.48
72660--72710	26	2.0	26	88	0	75	41	17	9	31	1.82
72660--72703	13	3.4	13	80	0	61	40	18	6	34	1.77
73929--74045	44	2.7	44	77	5	121	27	26	17	28	1.98
86240--86272	12	2.8	12	95	0	57	18	27	39	15	1.90
86350--86390	22	1.9	21	90	5	64	73	2	0	24	0.96
86842--86872	16	1.9	16	93	0	53	19	12	19	48	1.81
88395--88545	20	7.4	20	73	11	128	31	25	19	24	1.98
88395--88545	41	3.7	41	90	2	216	31	25	19	24	1.98
91724--92005	140	2.0	139	96	0	519	28	13	15	42	1.85
92022--92086	20	3.2	20	89	4	96	30	26	18	24	1.98
92092--92135	20	2.2	20	84	4	54	29	22	20	27	1.99
92119--92183	19	3.4	19	81	8	78	16	18	21	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92318--92348	14	2.3	14	94	5	55	48	22	0	29	1.51
92272--92439	75	2.2	77	90	6	272	51	17	2	27	1.59
92393--92428	13	2.6	14	86	8	56	47	19	0	33	1.50
93792--93912	42	2.9	42	76	7	129	24	19	34	21	1.96

Tables:   1

The End!