Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8415618
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 40
Found at i:445 original size:29 final size:29
Alignment explanation
Indices: 398--480 Score: 121
Period size: 29 Copynumber: 2.8 Consensus size: 29
388 CTCACCTAAC
*
398 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGAAATGACATCATTAAT
*
428 TAAATGATGTAAGAAATGACATCTTTAAT
1 TAAATGATGTAAGAAATGACATCATTAAT
* *
457 TAAATGATTTAAGTAATGACATCA
1 TAAATGATGTAAGAAATGACATCA
481 ATTTAGTTTG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 44 0.92
30 4 0.08
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (29 bp):
TAAATGATGTAAGAAATGACATCATTAAT
Found at i:4210 original size:31 final size:32
Alignment explanation
Indices: 4172--4245 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 32
4162 ACTAAATATA
*
4172 TTGGTACCTGAACTAGGCA-CTTT-CTCCCAAG
1 TTGGTACCTGAACTA-GAATCTTTGCTCCCAAG
*
4203 TTGGTACCT-AA--AGAATTTTTGCTCCCAAG
1 TTGGTACCTGAACTAGAATCTTTGCTCCCAAG
4232 TTGGTACCTGAACT
1 TTGGTACCTGAACT
4246 GTAATTTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
27 2 0.06
28 4 0.11
29 17 0.47
30 4 0.11
31 9 0.25
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (32 bp):
TTGGTACCTGAACTAGAATCTTTGCTCCCAAG
Found at i:14606 original size:64 final size:63
Alignment explanation
Indices: 14461--14606 Score: 163
Period size: 65 Copynumber: 2.3 Consensus size: 63
14451 CGAATACAAT
* * * **
14461 TTATGCATCGATGCACCAGACATGCATCGATGCACTCTGAGTTTTATTAAAACATCGAATTGATT
1 TTATGCACCGATGCA-CAAACATGCATCGATGCACTCTGAGTATTATTAAAACATCGAA-TGAAA
*
14526 TTATGCACCGATGCACAAACCATGCATCGATGCACTCTG-GCTATT-TTGAAACATCGAA-GCAA
1 TTATGCACCGATGCACAAA-CATGCATCGATGCACTCTGAG-TATTATTAAAACATCGAATG-AA
14588 A
63 A
14589 TTAGTGCACCGATGCACA
1 TTA-TGCACCGATGCACA
14607 CCCTAGTGTA
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
62 1 0.01
63 4 0.06
64 30 0.42
65 36 0.51
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (63 bp):
TTATGCACCGATGCACAAACATGCATCGATGCACTCTGAGTATTATTAAAACATCGAATGAAA
Found at i:18380 original size:12 final size:12
Alignment explanation
Indices: 18363--18397 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
18353 ATAAACATAA
18363 ATGACGTTGGAC
1 ATGACGTTGGAC
18375 ATGACGTTGGAC
1 ATGACGTTGGAC
18387 ATGACGTTGGA
1 ATGACGTTGGA
18398 GAACCATCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.34, T:0.26
Consensus pattern (12 bp):
ATGACGTTGGAC
Found at i:27488 original size:41 final size:41
Alignment explanation
Indices: 27398--27492 Score: 106
Period size: 40 Copynumber: 2.3 Consensus size: 41
27388 GATTTGACAT
* * *
27398 TTAGCGGCGTTTTTACAAAAAAATGCCGCAATAGGGTGGCTTA
1 TTAGCGGCGTTTTT--AAAAAAACGCCGCAATAGAGTGGCTAA
27441 TT-GCGGCGTTTGTT-AAAAAACGCCGCAATAGAGTGG-TAAA
1 TTAGCGGCGTTT-TTAAAAAAACGCCGCAATAGAGTGGCT-AA
27481 TTAGCGGCGTTT
1 TTAGCGGCGTTT
27493 ATACCACAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
39 1 0.02
40 23 0.50
41 9 0.20
42 9 0.20
43 4 0.09
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (41 bp):
TTAGCGGCGTTTTTAAAAAAACGCCGCAATAGAGTGGCTAA
Found at i:27543 original size:82 final size:83
Alignment explanation
Indices: 27457--27610 Score: 220
Period size: 82 Copynumber: 1.9 Consensus size: 83
27447 CGTTTGTTAA
* * * * * *
27457 AAAACGCCGCAATAGAGTGGTAAATTAGCGGCGTTTATACCACAAACGCCTCAATAGTTTA-ACA
1 AAAACACCGCAATAGAGTAGTAAATTAGCGGCATTTATACCACAAACACCGCAATAGATTACACA
27521 TATAGTGGCGTTTTAGCT
66 TATAGTGGCGTTTTAGCT
* * *
27539 AAAACACCGTAATATATTAGTAAATTAGCGGCATTTATACCACAAACACCGCAATAGATTACACA
1 AAAACACCGCAATAGAGTAGTAAATTAGCGGCATTTATACCACAAACACCGCAATAGATTACACA
27604 TATAGTG
66 TATAGTG
27611 CCATTTATTC
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
82 52 0.84
83 10 0.16
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (83 bp):
AAAACACCGCAATAGAGTAGTAAATTAGCGGCATTTATACCACAAACACCGCAATAGATTACACA
TATAGTGGCGTTTTAGCT
Found at i:27616 original size:42 final size:41
Alignment explanation
Indices: 27490--27618 Score: 111
Period size: 42 Copynumber: 3.1 Consensus size: 41
27480 ATTAGCGGCG
* * * *
27490 TTTATACCACAAACGCCTCAATAGTTTAACATATAGTGGCG
1 TTTATACCACAAACACCGCAATAGATTAACATATAGTGGCA
* * * * *
27531 TTT-TAGCTA-AAACACCGTAATATATTAGTAAAT-TAGCGGCA
1 TTTATA-CCACAAACACCGCAATAGATTA--ACATATAGTGGCA
*
27572 TTTATACCACAAACACCGCAATAGATTACACATATAGTGCCA
1 TTTATACCACAAACACCGCAATAGATTA-ACATATAGTGGCA
27614 TTTAT
1 TTTAT
27619 TCTTAAAATG
Statistics
Matches: 66, Mismatches: 16, Indels: 11
0.71 0.17 0.12
Matches are distributed among these distances:
40 15 0.23
41 19 0.29
42 32 0.48
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.30
Consensus pattern (41 bp):
TTTATACCACAAACACCGCAATAGATTAACATATAGTGGCA
Found at i:27679 original size:41 final size:40
Alignment explanation
Indices: 27623--27782 Score: 205
Period size: 41 Copynumber: 4.0 Consensus size: 40
27613 ATTTATTCTT
* * *
27623 AAAATGCCGCAATAGTGATAATAAATAGTGGCGTTTTTAA
1 AAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTAA
* *
27663 ATAAATGCCGCAATAGTGTTAATCAATAATGGCGTTTTTAGA
1 A-AAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTA-A
* *
27705 AAAACGCCGCAATAGTTTTAATCAATAGTGGCATTTTTTAA
1 AAAACGCCGCAATAGTGTTAATCAATAGTGGC-GTTTTTAA
* *
27746 CAAACGCCACAATAGTG-TAATCAATAGTGGCGTTTTT
1 AAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTT
27783 TTTGTATAAA
Statistics
Matches: 106, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
39 5 0.05
40 15 0.14
41 78 0.74
42 8 0.08
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (40 bp):
AAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTAA
Found at i:29147 original size:41 final size:41
Alignment explanation
Indices: 29053--29391 Score: 265
Period size: 41 Copynumber: 8.2 Consensus size: 41
29043 TTGTATCCAG
* *
29053 AAACGCCGCTATAG-GTACGTACTTTAGTGGCGTTTTTATAC
1 AAACGCCGCTATAGACT-CATACTTTAGTGGCGTTTTTATAC
** * *
29094 -AACTGCAACTATAGAATCATACGTTAGTGGCGTTTTTATAC
1 AAAC-GCCGCTATAGACTCATACTTTAGTGGCGTTTTTATAC
* * *
29135 AAACGCCGCTATATACT-AGTACTTTAGTGGTGTTTCTATAC
1 AAACGCCGCTATAGACTCA-TACTTTAGTGGCGTTTTTATAC
* * * *
29176 AAACGCAGCTATATACTCATACTTTAGTGGCATTTTGA-ATC
1 AAACGCCGCTATAGACTCATACTTTAGTGGCGTTTTTATA-C
* * * * *
29217 TAAACGCTGCTATAAACTCGTACATTAGTGGCGTTTTGAATGA-
1 -AAACGCCGCTATAGACTCATACTTTAGTGGCGTTTT-TAT-AC
* * *** ** *
29260 AAACGCCGCTAAATACTCATACTTTAACAGTATTTTTATAT
1 AAACGCCGCTATAGACTCATACTTTAGTGGCGTTTTTATAC
* **
29301 AAATGCCGCTATAGACTTGTACTTTAGTGGCGTTTTTATAC
1 AAACGCCGCTATAGACTCATACTTTAGTGGCGTTTTTATAC
* * * * *
29342 AAACGCTGCTATAGACTCGTACCCTTAGTGGCGTTTTTAGAT
1 AAACGCCGCTATAGACTCATA-CTTTAGTGGCGTTTTTATAC
29384 AAACGCCG
1 AAACGCCG
29392 TAATAGATAT
Statistics
Matches: 234, Mismatches: 52, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
40 6 0.03
41 140 0.60
42 86 0.37
43 1 0.00
45 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (41 bp):
AAACGCCGCTATAGACTCATACTTTAGTGGCGTTTTTATAC
Found at i:29245 original size:42 final size:42
Alignment explanation
Indices: 29176--29281 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
29166 GTTTCTATAC
* *
29176 AAACGCAGCTATATACTCATACTTTAGTGGCATTTTGAATCT
1 AAACGCAGCTATAAACTCATACATTAGTGGCATTTTGAATCT
* * * **
29218 AAACGCTGCTATAAACTCGTACATTAGTGGCGTTTTGAATGA
1 AAACGCAGCTATAAACTCATACATTAGTGGCATTTTGAATCT
*
29260 AAACGCCGCTA-AATACTCATAC
1 AAACGCAGCTATAA-ACTCATAC
29282 TTTAACAGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 2 0.04
42 52 0.96
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (42 bp):
AAACGCAGCTATAAACTCATACATTAGTGGCATTTTGAATCT
Found at i:29295 original size:84 final size:83
Alignment explanation
Indices: 29126--29336 Score: 203
Period size: 83 Copynumber: 2.5 Consensus size: 83
29116 GTTAGTGGCG
* * * * * * *
29126 TTTTTATACAAACGCCGCTATATACTAGTACTTTAGTGGTGTTTCT--AT-ACAAACGCAGCTAT
1 TTTTAATATAAACGCCGCTATAAACTCGTACATTAGTGGCGTTT-TGAATGA-AAACGCAGCTAA
***
29188 ATACTCATACTTTAGTGGCA
64 ATACTCATACTTTAACAGCA
* * *
29208 TTTTGAATCTAAACGCTGCTATAAACTCGTACATTAGTGGCGTTTTGAATGAAAACGCCGCTAAA
1 TTTT-AATATAAACGCCGCTATAAACTCGTACATTAGTGGCGTTTTGAATGAAAACGCAGCTAAA
*
29273 TACTCATACTTTAACAGTA
65 TACTCATACTTTAACAGCA
* * * * *
29292 TTTTTATATAAATGCCGCTATAGACTTGTACTTTAGTGGCGTTTT
1 TTTTAATATAAACGCCGCTATAAACTCGTACATTAGTGGCGTTTT
29337 TATACAAACG
Statistics
Matches: 104, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
82 5 0.05
83 66 0.63
84 32 0.31
85 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (83 bp):
TTTTAATATAAACGCCGCTATAAACTCGTACATTAGTGGCGTTTTGAATGAAAACGCAGCTAAAT
ACTCATACTTTAACAGCA
Found at i:29312 original size:125 final size:124
Alignment explanation
Indices: 29117--29378 Score: 298
Period size: 125 Copynumber: 2.1 Consensus size: 124
29107 GAATCATACG
* * *** *
29117 TTAGTGGCGTTTTTATACAAACGCCGCTATATACTAGTACTTTAGTGGTGTTTCTATACAAACGC
1 TTAGTGGCGTTTTAATACAAACGCCGCTAAATACTAGTACTTTAACAGTATTTCTATACAAACGC
*
29182 AGCTATATACTCATACTTTAGTGGCATTTTGAAT-CTAAACGCTGCTATAAACTCGTA-CA
66 AGCTATAGACTCATACTTTAGTGGCATTTT-AATAC-AAACGCTGCTATAAACTCGTACCA
* *
29241 TTAGTGGCGTTTTGAATGA-AAACGCCGCTAAATACTCA-TACTTTAACAGTATTTTTATATAAA
1 TTAGTGGCGTTTT-AAT-ACAAACGCCGCTAAATACT-AGTACTTTAACAGTATTTCTATACAAA
* * ** * * * *
29304 TGCCGCTATAGACTTGTACTTTAGTGGCGTTTTTATACAAACGCTGCTATAGACTCGTACCC
63 CGCAGCTATAGACTCATACTTTAGTGGCATTTTAATACAAACGCTGCTATAAACTCGTACCA
29366 TTAGTGGCGTTTT
1 TTAGTGGCGTTTT
29379 TAGATAAACG
Statistics
Matches: 116, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
124 35 0.30
125 79 0.68
126 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (124 bp):
TTAGTGGCGTTTTAATACAAACGCCGCTAAATACTAGTACTTTAACAGTATTTCTATACAAACGC
AGCTATAGACTCATACTTTAGTGGCATTTTAATACAAACGCTGCTATAAACTCGTACCA
Found at i:38273 original size:21 final size:21
Alignment explanation
Indices: 38249--38353 Score: 86
Period size: 21 Copynumber: 5.0 Consensus size: 21
38239 TGAAGCAAGG
* *
38249 GAAGCAGAGAGAGCAGCAGCA
1 GAAGCACAGAGAGAAGCAGCA
* * *
38270 GAAGCA-ACCAGAGTAGCAGCG
1 GAAGCACA-GAGAGAAGCAGCA
* * *
38291 GAAGCAGAGAAAGAAGCTGCA
1 GAAGCACAGAGAGAAGCAGCA
* * *
38312 GTAGCACAGAGAGAAGTAGCG
1 GAAGCACAGAGAGAAGCAGCA
*
38333 GCAGCACAGAGAGAAGCAGCA
1 GAAGCACAGAGAGAAGCAGCA
38354 TATCAGCAGA
Statistics
Matches: 65, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
20 1 0.02
21 63 0.97
22 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.35, T:0.04
Consensus pattern (21 bp):
GAAGCACAGAGAGAAGCAGCA
Found at i:38913 original size:128 final size:128
Alignment explanation
Indices: 38765--39007 Score: 344
Period size: 128 Copynumber: 1.9 Consensus size: 128
38755 TTTTTAGCAG
38765 AAATGCCGCAAAACATCAACACCTACTGCGGCGTTTTAACAAAAAACGCCGCTAAACATCATA-A
1 AAATGCCGCAAAACATCAACACCTACTGCGGCGTTTTAACAAAAAACGCCGCTAAACATCA-ACA
* * *
38829 CATATTGCGGCGTTTGTCTGAGAAACGCCACTAAATATCAACACCTATTGCGGCGTTTGTTGAA
65 CATATTGCGGCGTTTGTATAACAAACGCCACTAAATATCAACACCTATTGCGGCGTTTGTTGAA
* * * * * ** * *
38893 AAATGCTGCTAAATATCAACACCTATTGCGGCGTTTTTATGACAAACGCCGCTAAATATCAACAC
1 AAATGCCGCAAAACATCAACACCTACTGCGGCGTTTTAACAAAAAACGCCGCTAAACATCAACAC
* *
38958 CTATTGCGGCGTTTTTATAACAAACGCCACTAAATATCAACACCTATTGC
66 ATATTGCGGCGTTTGTATAACAAACGCCACTAAATATCAACACCTATTGC
39008 ATCATTTTTC
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
127 1 0.01
128 99 0.99
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (128 bp):
AAATGCCGCAAAACATCAACACCTACTGCGGCGTTTTAACAAAAAACGCCGCTAAACATCAACAC
ATATTGCGGCGTTTGTATAACAAACGCCACTAAATATCAACACCTATTGCGGCGTTTGTTGAA
Found at i:38940 original size:85 final size:84
Alignment explanation
Indices: 38779--39007 Score: 289
Period size: 85 Copynumber: 2.7 Consensus size: 84
38769 GCCGCAAAAC
* * * *
38779 ATCAACACCTACTGCGGCGTTTTAACAAAAAACGCCGCTAAACATCATA-ACATATTGCGGCGTT
1 ATCAACACCTATTGCGGCGTTTT--TAAAAAACGCCGCTAAATATCA-ACACCTATTGCGGCGTT
* *
38843 TGTCTGAGAAACGCCACTAAAT
63 TGTATGACAAACGCCACTAAAT
* * * *
38865 ATCAACACCTATTGCGGCGTTTGTTGAAAAATGCTGCTAAATATCAACACCTATTGCGGCGTTTT
1 ATCAACACCTATTGCGGCGTTT-TTAAAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTG
*
38930 TATGACAAACGCCGCTAAAT
65 TATGACAAACGCCACTAAAT
*
38950 ATCAACACCTATTGCGGCGTTTTTATAACAAACGCCACTAAATATCAACACCTATTGC
1 ATCAACACCTATTGCGGCGTTTTTA-AA-AAACGCCGCTAAATATCAACACCTATTGC
39008 ATCATTTTTC
Statistics
Matches: 124, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
84 3 0.02
85 73 0.59
86 47 0.38
87 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (84 bp):
ATCAACACCTATTGCGGCGTTTTTAAAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGT
ATGACAAACGCCACTAAAT
Found at i:39016 original size:43 final size:43
Alignment explanation
Indices: 38769--39059 Score: 284
Period size: 43 Copynumber: 6.8 Consensus size: 43
38759 TAGCAGAAAT
* * * * * *
38769 GCCGCAAAACATCAACACCTACTGCGGCGTTTTAACAAAAAAC
1 GCCGCTAAATATCAACACCTATTGCGGCGTTTTTATAACAAAC
* * * * * *
38812 GCCGCTAAACATCATA-ACATATTGCGGCGTTTGTCTGAGAAAC
1 GCCGCTAAATATCA-ACACCTATTGCGGCGTTTTTATAACAAAC
* * *
38855 GCCACTAAATATCAACACCTATTGCGGCGTTTGTT-GAA-AAAT
1 GCCGCTAAATATCAACACCTATTGCGGCGTTT-TTATAACAAAC
* *
38897 GCTGCTAAATATCAACACCTATTGCGGCGTTTTTATGACAAAC
1 GCCGCTAAATATCAACACCTATTGCGGCGTTTTTATAACAAAC
38940 GCCGCTAAATATCAACACCTATTGCGGCGTTTTTATAACAAAC
1 GCCGCTAAATATCAACACCTATTGCGGCGTTTTTATAACAAAC
* ** * *
38983 GCCACTAAATATCAACACCTATTGCATCATTTTTCA-CACAAAC
1 GCCGCTAAATATCAACACCTATTGCGGCGTTTTT-ATAACAAAC
* * * * *
39026 ACCGCTAAATATCAATACTTACTGCGGTGTTTTT
1 GCCGCTAAATATCAACACCTATTGCGGCGTTTTT
39060 TGTGAAAAAA
Statistics
Matches: 205, Mismatches: 37, Indels: 12
0.81 0.15 0.05
Matches are distributed among these distances:
41 2 0.01
42 35 0.17
43 165 0.80
44 3 0.01
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
GCCGCTAAATATCAACACCTATTGCGGCGTTTTTATAACAAAC
Found at i:42710 original size:31 final size:31
Alignment explanation
Indices: 42651--42809 Score: 92
Period size: 32 Copynumber: 5.1 Consensus size: 31
42641 GAACCTCGGC
* * * *
42651 AACTGT-CATAGGTCCCGAAGAACCTAGGTA
1 AACTGTCCATATGTTCCGTAGAACATAGGTA
42681 AACTGTCCATATGTTCCGTAGAACATAGGTA
1 AACTGTCCATATGTTCCGTAGAACATAGGTA
* * * ** * **
42712 TATTGTTCATATG-TCCCAAAAGACATAAATA
1 AACTGTCCATATGTTCCGTAGA-ACATAGGTA
* * *
42743 ATTCTGTCCATAT-ATCC-TGAAAGACATAGGTA
1 A-ACTGTCCATATGTTCCGT-AGA-ACATAGGTA
* *
42775 ATTCTGTCCATATGTTCCATAGAACATAGGTA
1 A-ACTGTCCATATGTTCCGTAGAACATAGGTA
42807 AAC
1 AAC
42810 CCTCGACTTT
Statistics
Matches: 100, Mismatches: 22, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
30 11 0.11
31 38 0.38
32 45 0.45
33 5 0.05
34 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (31 bp):
AACTGTCCATATGTTCCGTAGAACATAGGTA
Found at i:42802 original size:32 final size:32
Alignment explanation
Indices: 42669--42807 Score: 110
Period size: 32 Copynumber: 4.4 Consensus size: 32
42659 TAGGTCCCGA
* * *
42669 AGAACCTAGGTAA-ACTGTCCATATGTTCCGT
1 AGAACATAGGTAATTCTGTCCATATGTTCCAT
* *
42700 AGAACATAGGT-ATAT-TGTTCATATGTCCCA-
1 AGAACATAGGTAAT-TCTGTCCATATGTTCCAT
* ** *
42730 AAAGACATAAATAATTCTGTCCATAT-ATCC-T
1 AGA-ACATAGGTAATTCTGTCCATATGTTCCAT
*
42761 GAAAGACATAGGTAATTCTGTCCATATGTTCCAT
1 -AGA-ACATAGGTAATTCTGTCCATATGTTCCAT
42795 AGAACATAGGTAA
1 AGAACATAGGTAA
42808 ACCCTCGACT
Statistics
Matches: 84, Mismatches: 15, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
30 3 0.04
31 31 0.37
32 44 0.52
33 5 0.06
34 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (32 bp):
AGAACATAGGTAATTCTGTCCATATGTTCCAT
Found at i:43479 original size:24 final size:20
Alignment explanation
Indices: 43422--43479 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 20
43412 TTTCCCTTGA
*
43422 AGTGCATCGATACATTCTAC
1 AGTGCATCGATGCATTCTAC
*
43442 AGTGTATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
43465 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
43480 CTACCCATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 15 0.48
22 1 0.03
23 3 0.10
24 12 0.39
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:46559 original size:23 final size:23
Alignment explanation
Indices: 46533--46601 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
46523 CACCACAACT
*
46533 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * * **
46556 CGTAGAATTACACCGAAATGCTG
1 CGTAGAAATGCACCGAAGTGCCA
46579 CGTAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
46602 TATAAAATGT
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:46693 original size:21 final size:21
Alignment explanation
Indices: 46655--46706 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
46645 TATATACACA
*
46655 TTCCAAAGGACCAAATATGTG
1 TTCCAAAGGACCAAATATATG
**
46676 -TCTCAAAGGACCGCATATATG
1 TTC-CAAAGGACCAAATATATG
46697 TTCCAAAGGA
1 TTCCAAAGGA
46707 TTACATATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 2 0.08
21 22 0.85
22 2 0.08
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (21 bp):
TTCCAAAGGACCAAATATATG
Found at i:51816 original size:19 final size:20
Alignment explanation
Indices: 51794--51837 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
51784 GAGAAAAGGT
51794 AAAAGTTAA-AATGAAAGAG
1 AAAAGTTAATAATGAAAGAG
* *
51813 AAAAATTAATAATGAAAGAT
1 AAAAGTTAATAATGAAAGAG
51833 AAAAG
1 AAAAG
51838 AAAAAGTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.18
Consensus pattern (20 bp):
AAAAGTTAATAATGAAAGAG
Found at i:58208 original size:17 final size:16
Alignment explanation
Indices: 58186--58219 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
58176 CAAAAACAGT
58186 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
58203 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
58219 A
1 A
58220 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:63411 original size:20 final size:20
Alignment explanation
Indices: 63347--63421 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
63337 AGTAGCCCAA
* *
63347 AAAGTTTCGATACTTTCATGT
1 AAAGTTTCGAAACTTTCCT-T
* *
63368 --AGTTTCGAAACTAT-CTC
1 AAAGTTTCGAAACTTTCCTT
63385 AATAGTTTCGAAACTTTCCTT
1 AA-AGTTTCGAAACTTTCCTT
*
63406 AAAGTTTCGATACTTT
1 AAAGTTTCGAAACTTT
63422 GGGGCAACGG
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
18 1 0.02
19 12 0.28
20 26 0.60
21 4 0.09
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (20 bp):
AAAGTTTCGAAACTTTCCTT
Found at i:68557 original size:29 final size:31
Alignment explanation
Indices: 68503--68565 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
68493 TAACAATTAG
* *
68503 TTTTTGTATTTATAATTAGGATCCC-TAATT
1 TTTTTATATTTATAATTAGGAACCCTTAATT
68533 TTTTTATATTTATAATTA-GAACCCTTAATT
1 TTTTTATATTTATAATTAGGAACCCTTAATT
68563 TTT
1 TTT
68566 ATAATTTCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 5 0.17
30 25 0.83
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.56
Consensus pattern (31 bp):
TTTTTATATTTATAATTAGGAACCCTTAATT
Found at i:68572 original size:29 final size:30
Alignment explanation
Indices: 68509--68572 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
68499 TTAGTTTTTG
* *
68509 TATTTATAATTAGGATCCCTAATTTTTTTA
1 TATTTATAATTAGGAACCCTAATTTTTATA
68539 TATTTATAATTA-GAACCCTTAATTTTTATA
1 TATTTATAATTAGGAACCC-TAATTTTTATA
68569 -ATTT
1 TATTT
68573 CATATTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.53
Consensus pattern (30 bp):
TATTTATAATTAGGAACCCTAATTTTTATA
Found at i:73727 original size:34 final size:34
Alignment explanation
Indices: 73688--73756 Score: 113
Period size: 34 Copynumber: 2.0 Consensus size: 34
73678 CATATCTCCA
73688 CTTTGAGTGGTCCAGC-ACTGCGCCAAACTCATCT
1 CTTTGAGTGGTCCAGCGA-TGCGCCAAACTCATCT
*
73722 CTTTGAGTGGTTCAGCGATGCGCCAAACTCATCT
1 CTTTGAGTGGTCCAGCGATGCGCCAAACTCATCT
73756 C
1 C
73757 CACTTTGAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
34 32 0.97
35 1 0.03
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (34 bp):
CTTTGAGTGGTCCAGCGATGCGCCAAACTCATCT
Found at i:77546 original size:18 final size:18
Alignment explanation
Indices: 77523--77579 Score: 87
Period size: 18 Copynumber: 3.1 Consensus size: 18
77513 ATCAGATTGT
77523 CCAGGGGTACAGATTCCC
1 CCAGGGGTACAGATTCCC
*
77541 CCAGGGGAAACAGATTCCC
1 CCAGGGG-TACAGATTCCC
*
77560 CCAGGGGTACCGATTCCC
1 CCAGGGGTACAGATTCCC
77578 CC
1 CC
77580 TGTCTAATGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
18 18 0.51
19 17 0.49
ACGTcount: A:0.23, C:0.37, G:0.26, T:0.14
Consensus pattern (18 bp):
CCAGGGGTACAGATTCCC
Found at i:89941 original size:45 final size:47
Alignment explanation
Indices: 89890--89977 Score: 144
Period size: 45 Copynumber: 1.9 Consensus size: 47
89880 CGAATAAATG
89890 CATGCGAACTAGATATCATGCGGTTAGG-TTTATTTTT-TGAACAAA
1 CATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAACAAA
* *
89935 CATGCGAATTAGATATCATGTGGTTAGGATTTATTTTTGTGAA
1 CATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAA
89978 TAACAAATCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 26 0.67
46 9 0.23
47 4 0.10
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (47 bp):
CATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAACAAA
Found at i:99637 original size:7 final size:7
Alignment explanation
Indices: 99620--99801 Score: 84
Period size: 7 Copynumber: 24.1 Consensus size: 7
99610 AAGAAGAAAT
99620 AAAAGAGA
1 AAAAGA-A
99628 AAAAGAA
1 AAAAGAA
99635 AAAAGAA
1 AAAAGAA
99642 AAAATGAAA
1 AAAA-G-AA
*
99651 AAAATAA
1 AAAAGAA
*
99658 TAATAATAA
1 -AA-AAGAA
*
99667 AAATGAGA
1 AAAAGA-A
*
99675 AGAAG-A
1 AAAAGAA
99681 AAAAGAA
1 AAAAGAA
99688 GAAAAGAA
1 -AAAAGAA
99696 AAATGAGAA
1 AAA--AGAA
99705 AAAA-ATA
1 AAAAGA-A
**
99712 AAAATGGT
1 AAAA-GAA
*
99720 GAAAGAA
1 AAAAGAA
*
99727 GAAAGAA
1 AAAAGAA
99734 AAAAGAAGA
1 AAAAG-A-A
99743 AAAATGAA
1 AAAA-GAA
*
99751 AAGAGAA
1 AAAAGAA
*
99758 AATA-AA
1 AAAAGAA
*
99764 AAATGAA
1 AAAAGAA
99771 AAAATGAAA
1 AAAA-G-AA
99780 AAGAAGAA
1 AA-AAGAA
99788 AAAAG-A
1 AAAAGAA
99794 AAAAGAA
1 AAAAGAA
99801 A
1 A
99802 TAAAAAGAGG
Statistics
Matches: 137, Mismatches: 17, Indels: 41
0.70 0.09 0.21
Matches are distributed among these distances:
6 16 0.12
7 54 0.39
8 35 0.26
9 29 0.21
10 3 0.02
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (7 bp):
AAAAGAA
Found at i:99640 original size:15 final size:15
Alignment explanation
Indices: 99620--99801 Score: 80
Period size: 15 Copynumber: 12.1 Consensus size: 15
99610 AAGAAGAAAT
99620 AAAAGAGAAAAAGAA
1 AAAAGAGAAAAAGAA
99635 AAAAGA-AAAAATGAA
1 AAAAGAGAAAAA-GAA
*
99650 AAAA-ATAATAATA-ATA
1 AAAAGAGAA-AA-AGA-A
*
99666 AAAATGAGAAGAAG-A
1 AAAA-GAGAAAAAGAA
99681 AAAAGA-AGAAAAGAA
1 AAAAGAGA-AAAAGAA
* *
99696 AAATGAGAAAAAAATA
1 AAAAGAGAAAAAGA-A
**
99712 AAAATG-GTGAAAGAA
1 AAAA-GAGAAAAAGAA
*
99727 GAAAGA-AAAAAGAA
1 AAAAGAGAAAAAGAA
99741 GAAAA-ATGAAAAGAGAA
1 -AAAAGA-GAAAA-AGAA
* *
99758 AATA-A-AAAATGAA
1 AAAAGAGAAAAAGAA
*
99771 AAAA-TGAAAAAGAA
1 AAAAGAGAAAAAGAA
*
99785 GAAAAAAGAAAAAGAA
1 -AAAAGAGAAAAAGAA
99801 A
1 A
99802 TAAAAAGAGG
Statistics
Matches: 127, Mismatches: 19, Indels: 42
0.68 0.10 0.22
Matches are distributed among these distances:
13 7 0.06
14 31 0.24
15 44 0.35
16 35 0.28
17 7 0.06
18 3 0.02
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (15 bp):
AAAAGAGAAAAAGAA
Found at i:99704 original size:17 final size:17
Alignment explanation
Indices: 99665--99717 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
99655 TAATAATAAT
99665 AAAAATGAGAAG--AAG
1 AAAAATGAGAAGAAAAG
99680 -AAAA--AGAAGAAAAG
1 AAAAATGAGAAGAAAAG
* *
99694 AAAAATGAGAAAAAAAT
1 AAAAATGAGAAGAAAAG
99711 AAAAATG
1 AAAAATG
99718 GTGAAAGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
12 5 0.16
14 7 0.23
15 4 0.13
17 15 0.48
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.08
Consensus pattern (17 bp):
AAAAATGAGAAGAAAAG
Found at i:99737 original size:53 final size:52
Alignment explanation
Indices: 99621--99801 Score: 144
Period size: 53 Copynumber: 3.4 Consensus size: 52
99611 AGAAGAAATA
*
99621 AAAGAGAAAAAGAA-AAAAGAAAAAATGAAAAAAATAATAATAATAAAAATG
1 AAAGAGAAAAAGAAGAAAAGAAAAAATGAAAAAAATAAAAATAATAAAAATG
**
99672 AGAAGAAGAAAAAGAAGAAAAG-AAAAATGAGAAAAAAATAAAAATGGTGAAAGAA-G
1 A-AAG-AGAAAAAGAAGAAAAGAAAAAAT--GAAAAAAATAAAAATAAT-AAA-AATG
* * *
99728 AAAGA-AAAAAGAAGAAAA-ATGAAAA-G-AGAAAATAAAAAATGA-AAAAATG
1 AAAGAGAAAAAGAAGAAAAGA-AAAAATGAAAAAAAT-AAAAATAATAAAAATG
* *
99777 AAAAAGAAGAAAAAAGAAAAAGAAA
1 AAAGAGAA-AAAGAAG-AAAAGAAA
99802 TAAAAAGAGG
Statistics
Matches: 106, Mismatches: 9, Indels: 29
0.74 0.06 0.20
Matches are distributed among these distances:
48 2 0.02
49 8 0.08
50 8 0.08
51 15 0.14
52 8 0.08
53 30 0.28
54 10 0.09
55 18 0.17
56 5 0.05
57 2 0.02
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (52 bp):
AAAGAGAAAAAGAAGAAAAGAAAAAATGAAAAAAATAAAAATAATAAAAATG
Found at i:99750 original size:28 final size:28
Alignment explanation
Indices: 99719--99809 Score: 95
Period size: 28 Copynumber: 3.3 Consensus size: 28
99709 ATAAAAATGG
99719 TGAAAGAAGAAAGAAAAAAGAAG-AAAAA
1 TGAAA-AAGAAAGAAAAAAGAAGAAAAAA
*
99747 TGAAAAGAGAAA-ATAAAAA-ATGAAAAAA
1 TGAAAA-AGAAAGA-AAAAAGAAGAAAAAA
99775 TGAAAAAG-AAGAAAAAAGAA-AAAGAAA
1 TGAAAAAGAAAGAAAAAAGAAGAAA-AAA
99802 T-AAAAAGA
1 TGAAAAAGA
99810 GGGTTCAAGA
Statistics
Matches: 54, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
26 16 0.30
27 12 0.22
28 26 0.48
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.07
Consensus pattern (28 bp):
TGAAAAAGAAAGAAAAAAGAAGAAAAAA
Found at i:99766 original size:30 final size:30
Alignment explanation
Indices: 99627--99806 Score: 104
Period size: 31 Copynumber: 5.6 Consensus size: 30
99617 AATAAAAGAG
*
99627 AAAAAGAAAAAAG-AAAAAATGAAAAA-AAT
1 AAAAA-AAAAAAGAAAAAAATGAAAAAGAAG
* *
99656 AATAATAATAAAAATGAGAAGAA-GAAAAAGAAG
1 AA-AA-AA-AAAAA-GAAAAAAATGAAAAAGAAG
*
99689 AAAAGAAAAATGAGAAAAAAAT-AAAAATGGTGAAAG
1 AAAA-AAAAA-AAGAAAAAAATGAAAAA----G-AAG
99725 AAGAAAGAAAAAAGAAGAAAAATG-AAAAG-AG
1 AA-AAA-AAAAAAGAA-AAAAATGAAAAAGAAG
*
99756 AAAATAAAAAATG-AAAAAATGAAAAAGAAG
1 AAAA-AAAAAAAGAAAAAAATGAAAAAGAAG
99786 AAAAAAGAAAAAGAAATAAAA
1 AAAAAA-AAAAAGAAA-AAAA
99807 AGAGGGTTCA
Statistics
Matches: 118, Mismatches: 10, Indels: 43
0.69 0.06 0.25
Matches are distributed among these distances:
28 7 0.06
29 10 0.08
30 22 0.19
31 27 0.23
32 16 0.14
33 9 0.08
35 1 0.01
36 10 0.08
37 16 0.14
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (30 bp):
AAAAAAAAAAAGAAAAAAATGAAAAAGAAG
Found at i:99807 original size:61 final size:59
Alignment explanation
Indices: 99613--99809 Score: 145
Period size: 60 Copynumber: 3.2 Consensus size: 59
99603 TCGCTTGAAG
* * * * *
99613 AAGAAATAAAAGAGAAAAAGAAAAAAGAAAAAATGAAAAAAAT-AATAATAATAAAAATGAGAAG
1 AAGAAATAAAA-AG-AAAAG-AAAAATAAAAAATG-AAAAAATGAAAAAGAAGAAAAA--AGAAA
* * ** *
99677 AAGAAA-AAGAAGAAAAGAAAAATGAGAAAAA-AATAAAAATGGTGAAAGAAG-AAAGA-AAA
1 AAGAAATAAAAAGAAAAGAAAAAT-A-AAAAATGA-AAAAAT-GAAAAAGAAGAAAAAAGAAA
*
99736 AAGAAGA-AAAATGAAAAGAGAAAATAAAAAATGAAAAAATGAAAAAGAAGAAAAAAGAAA
1 AAGAA-ATAAAAAGAAAAGA-AAAATAAAAAATGAAAAAATGAAAAAGAAGAAAAAAGAAA
99796 AAGAAATAAAAAGA
1 AAGAAATAAAAAGA
99810 GGGTTCAAGA
Statistics
Matches: 105, Mismatches: 17, Indels: 26
0.71 0.11 0.18
Matches are distributed among these distances:
58 8 0.08
59 23 0.22
60 34 0.32
61 17 0.16
62 10 0.10
63 7 0.07
64 6 0.06
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (59 bp):
AAGAAATAAAAAGAAAAGAAAAATAAAAAATGAAAAAATGAAAAAGAAGAAAAAAGAAA
Found at i:101123 original size:37 final size:37
Alignment explanation
Indices: 101066--101148 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 37
101056 GTTGGATCTT
* *
101066 TGAAACAAATCAATCTTAAGCCTTCACGGAAGAGTAG
1 TGAAGCAAATCAATCTTAAGCCTTCACGGAAGAATAG
101103 TGAAGCAAATC-ATCTATAAGCCTTCACGGAAGAATAG
1 TGAAGCAAATCAATCT-TAAGCCTTCACGGAAGAATAG
101140 TGAAGCAAA
1 TGAAGCAAA
101149 CCCGTTTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 4 0.09
37 39 0.91
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.20
Consensus pattern (37 bp):
TGAAGCAAATCAATCTTAAGCCTTCACGGAAGAATAG
Found at i:101210 original size:55 final size:55
Alignment explanation
Indices: 101148--101552 Score: 629
Period size: 55 Copynumber: 7.4 Consensus size: 55
101138 AGTGAAGCAA
101148 ACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
1 ACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
*
101203 ACTCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
1 ACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
*
101258 ACCTGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
1 ACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
*
101313 ACCCATTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
1 ACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
* ** *
101368 ACCCGCTTTATGAAGACCGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAACGG
1 ACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
101423 ACCCGTTTTATGAAGATTGTT-GAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
1 ACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
* * ** * *
101477 ACCCGTTTGT-TGAAGATTATTCGAG-TCTTATACTCCCTGAACTAATAGGGAGCAG
1 ACCCGTTT-TATGAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGAGAGCGG
*
101532 ACACGTTTGT-TGAAGATTGTT
1 ACCCGTTT-TATGAAGATTGTT
101553 TTAGTCTTAT
Statistics
Matches: 325, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
54 52 0.16
55 273 0.84
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (55 bp):
ACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
Found at i:101559 original size:55 final size:54
Alignment explanation
Indices: 101131--101659 Score: 352
Period size: 55 Copynumber: 9.6 Consensus size: 54
101121 AGCCTTCACG
* * * *
101131 GAAGAATAGTGAAGCAAACCCGTTT-TATGAAGATTGTTCGAGT-TCTATACTCTCT
1 GAAGAATAG-GGAGCAGACACGTTTGT-TGAAGATTGTTCGAGTCT-TATACTCCCT
* * * *
101186 GAAGGAATAGAGAGCGGACTCGTTT-TATGAAGATTGTTCGAGT-TCTATACTCTCT
1 GAA-GAATAGGGAGCAGACACGTTTGT-TGAAGATTGTTCGAGTCT-TATACTCCCT
* * *
101241 GAAGGAATAGAGAGCGGAC-CTGTTT-TATGAAGATTGTTCGAGT-TCTATACTCTCT
1 GAA-GAATAGGGAGCAGACAC-GTTTGT-TGAAGATTGTTCGAGTCT-TATACTCCCT
* * * * *
101296 GAAGGAATAGAGAGCGGACCCATTT-TATGAAGATTGTTCGAGT-TCTATACTCTCT
1 GAA-GAATAGGGAGCAGACACGTTTGT-TGAAGATTGTTCGAGTCT-TATACTCCCT
* * * * ** *
101351 GAAGGAATAGAGAGCGGACCCGCTTT-ATGAAGACCGTTCGAGT-TCTATACTCTCT
1 GAA-GAATAGGGAGCAGACACG-TTTGTTGAAGATTGTTCGAGTCT-TATACTCCCT
* * * * *
101406 GAAGGAATAGAGAACGGACCCGTTT-TATGAAGATTGTT-GAGT-TCTATACTCTCT
1 GAA-GAATAGGGAGCAGACACGTTTGT-TGAAGATTGTTCGAGTCT-TATACTCCCT
* * * *
101460 GAAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTATTCGAGTCTTATACTCCCT
1 GAA-GAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTCTTATACTCCCT
* ** *
101515 GAACTAATAGGGAGCAGACACGTTTGTTGAAGATTGTTTTAGTCTTATTCTCCCT
1 GAA-GAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTCTTATACTCCCT
** *
101570 GAATGAATAGGGAGCAGACACGTTTG-CCAATGATTGTTCGAGTCTTATACTCCTT
1 GAA-GAATAGGGAGCAGACACGTTTGTTGAA-GATTGTTCGAGTCTTATACTCCCT
* *
101625 GAAAGAAAAGGGAGCAGACCCGTTAT-TTGAAGATT
1 G-AAGAATAGGGAGCAGACACGTT-TGTTGAAGATT
101660 TTTCAAGTAT
Statistics
Matches: 424, Mismatches: 38, Indels: 24
0.87 0.08 0.05
Matches are distributed among these distances:
54 56 0.13
55 352 0.83
56 16 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (54 bp):
GAAGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCGAGTCTTATACTCCCT
Found at i:101607 original size:164 final size:164
Alignment explanation
Indices: 101148--101659 Score: 509
Period size: 165 Copynumber: 3.1 Consensus size: 164
101138 AGTGAAGCAA
* * * * * *
101148 ACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACTCGTTTTA
1 ACCCGTTTT-TGAAGATTATTCGAGTTCTATACTCCCTGAACGAATAGAGAGCAGACACGCTTTA
** * * * **
101213 TGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGAC-CTGTTTTATGAAGATTG
65 TGAAGACCGTTCGAGTTCTATACTCCCTGAAGGAATAGAGAACAGACAC-GTTTTACCAAGATTG
101277 TTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
129 TTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
* * * * * *
101313 ACCCATTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGCTTTA
1 ACCCGTTTT-TGAAGATTATTCGAGTTCTATACTCCCTGAACGAATAGAGAGCAGACACGCTTTA
* * * **
101378 TGAAGACCGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAACGGACCCGTTTTATGAAGATTGT
65 TGAAGACCGTTCGAGTTCTATACTCCCTGAAGGAATAGAGAACAGACACGTTTTACCAAGATTGT
101443 T-GAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
130 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
* *
101477 ACCCGTTTGTTGAAGATTATTCGAG-TCTTATACTCCCTGAACTAATAGGGAGCAGACACG-TTT
1 ACCCGTTT-TTGAAGATTATTCGAGTTC-TATACTCCCTGAACGAATAGAGAGCAGACACGCTTT
* ** ** * * * * *
101540 GTTGAAGATTGTTTTAG-TCTTATTCTCCCTGAATGAATAGGGAGCAGACACG-TTTGCCAATGA
64 -ATGAAGACCGTTCGAGTTC-TATACTCCCTGAAGGAATAGAGAACAGACACGTTTTACCAA-GA
* * * *
101603 TTGTTCGAG-TCTTATACTC-CTTGAAAGAAAAGGGAGCAG
126 TTGTTCGAGTTC-TATACTCTC-TGAAGGAATAGAGAGCGG
101642 ACCCGTTATTTGAAGATT
1 ACCCGTT-TTTGAAGATT
101660 TTTCAAGTAT
Statistics
Matches: 304, Mismatches: 33, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
163 12 0.04
164 126 0.41
165 164 0.54
166 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (164 bp):
ACCCGTTTTTGAAGATTATTCGAGTTCTATACTCCCTGAACGAATAGAGAGCAGACACGCTTTAT
GAAGACCGTTCGAGTTCTATACTCCCTGAAGGAATAGAGAACAGACACGTTTTACCAAGATTGTT
CGAGTTCTATACTCTCTGAAGGAATAGAGAGCGG
Found at i:106073 original size:3 final size:3
Alignment explanation
Indices: 106067--106115 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
106057 TCATTTTTGT
**
106067 TTA TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
106114 TT
1 TT
106116 TAATAAATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:114194 original size:20 final size:21
Alignment explanation
Indices: 114169--114208 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
114159 TCTATTAGTT
*
114169 ATTAGATAGGATCA-TTTTTA
1 ATTAGATAGAATCAGTTTTTA
114189 ATTAGATAGAATCAGTTTTT
1 ATTAGATAGAATCAGTTTTT
114209 TATTCTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (21 bp):
ATTAGATAGAATCAGTTTTTA
Found at i:114225 original size:53 final size:52
Alignment explanation
Indices: 114136--114265 Score: 244
Period size: 53 Copynumber: 2.5 Consensus size: 52
114126 ATCTAAATTA
114136 AATTAGATAGAATCAGTTTTTATTCTATTAGTTATTAGATAGGATCATTTTT
1 AATTAGATAGAATCAGTTTTTATTCTATTAGTTATTAGATAGGATCATTTTT
114188 AATTAGATAGAATCAGTTTTTTATTCTATTAGTTATTAGATAGGATCATTTTT
1 AATTAGATAGAATCAG-TTTTTATTCTATTAGTTATTAGATAGGATCATTTTT
114241 AATTAGATAGAATCA-TTTTTATTCT
1 AATTAGATAGAATCAGTTTTTATTCT
114266 GTTGCTAATT
Statistics
Matches: 77, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
51 10 0.13
52 16 0.21
53 51 0.66
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48
Consensus pattern (52 bp):
AATTAGATAGAATCAGTTTTTATTCTATTAGTTATTAGATAGGATCATTTTT
Found at i:114247 original size:20 final size:20
Alignment explanation
Indices: 114222--114261 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
114212 TCTATTAGTT
*
114222 ATTAGATAGGATCATTTTTA
1 ATTAGATAGAATCATTTTTA
114242 ATTAGATAGAATCATTTTTA
1 ATTAGATAGAATCATTTTTA
114262 TTCTGTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (20 bp):
ATTAGATAGAATCATTTTTA
Found at i:120822 original size:43 final size:43
Alignment explanation
Indices: 120774--120880 Score: 205
Period size: 43 Copynumber: 2.5 Consensus size: 43
120764 AATTGAGACG
*
120774 GTAGGACATTGTCTTATATAATTAATCTGAAATAGTGCTGACA
1 GTAGGACATTGTCTTATATAATTAATCTGAAATAATGCTGACA
120817 GTAGGACATTGTCTTATATAATTAATCTGAAATAATGCTGACA
1 GTAGGACATTGTCTTATATAATTAATCTGAAATAATGCTGACA
120860 GTAGGACATTGTCTTATATAA
1 GTAGGACATTGTCTTATATAA
120881 AAAGAAGTGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (43 bp):
GTAGGACATTGTCTTATATAATTAATCTGAAATAATGCTGACA
Found at i:120949 original size:15 final size:15
Alignment explanation
Indices: 120929--120964 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
120919 CTTCACACCT
*
120929 GCAGGGTGCAGTTAG
1 GCAGGGTGCAGTCAG
120944 GCAGGGTGCAGTCAG
1 GCAGGGTGCAGTCAG
120959 GCAGGG
1 GCAGGG
120965 AGCTTTGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.19, C:0.17, G:0.50, T:0.14
Consensus pattern (15 bp):
GCAGGGTGCAGTCAG
Found at i:122356 original size:29 final size:29
Alignment explanation
Indices: 122324--122380 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
122314 ATTTCAAAAT
122324 TATAATTATGAAA-AAAATATTAATTTATA
1 TATAATTAT-AAATAAAATATTAATTTATA
* *
122353 TATATTTATAAATAAAATATTTATTTAT
1 TATAATTATAAATAAAATATTAATTTAT
122381 TTAGAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 22 0.88
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
TATAATTATAAATAAAATATTAATTTATA
Found at i:122588 original size:120 final size:120
Alignment explanation
Indices: 122345--122581 Score: 286
Period size: 120 Copynumber: 2.0 Consensus size: 120
122335 AAAAAATATT
* * * * *
122345 AATTTATATAT-ATTTAT-AAATAAAATATTTATTTATTTAGAAATATCAGAAAAGGACTTCTAG
1 AATTAATATATAATTTATAAAATAAAATATTTATTTATTTAAAAATATCAGAAAAAGACATCCAG
* * * *
122408 GTGCCTTAAGACAGCTCTTTTCTTCGATATTAAAAAATAAATAATTAATTAAAAC
66 GTACCTTAAGACAGCTCCTTTCTTCAATATTAAAAAATAAATAAATAATTAAAAC
**
122463 AATTAATATATAATTTATAAAATAGGATATTTATTTATTTAAAAATATCAGAAAATAGACATCCA
1 AATTAATATATAATTTATAAAATAAAATATTTATTTATTTAAAAATATCAGAAAA-AGACATCCA
* ** * *
122528 GTTATTTTAAGACTGC-CCTTTCTT-AATATTGAAAAATAAATAAAT-ATTAAAAC
65 GGTACCTTAAGACAGCTCCTTTCTTCAATATTAAAAAATAAATAAATAATTAAAAC
122581 A
1 A
122582 GGATTAAAAT
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
118 19 0.19
119 24 0.24
120 40 0.40
121 17 0.17
ACGTcount: A:0.46, C:0.09, G:0.08, T:0.38
Consensus pattern (120 bp):
AATTAATATATAATTTATAAAATAAAATATTTATTTATTTAAAAATATCAGAAAAAGACATCCAG
GTACCTTAAGACAGCTCCTTTCTTCAATATTAAAAAATAAATAAATAATTAAAAC
Found at i:122599 original size:10 final size:10
Alignment explanation
Indices: 122584--122643 Score: 56
Period size: 9 Copynumber: 6.2 Consensus size: 10
122574 TTAAAACAGG
122584 ATTAAAATAA
1 ATTAAAATAA
122594 ATTAAAA-ATA
1 ATTAAAATA-A
122604 ATT-AAATAA
1 ATTAAAATAA
**
122613 GATTTTAATAA
1 -ATTAAAATAA
122624 A-TAAAATAA
1 ATTAAAATAA
122633 A-TAAAATAA
1 ATTAAAATAA
122642 AT
1 AT
122644 ATTATTTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
9 21 0.50
10 16 0.38
11 5 0.12
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (10 bp):
ATTAAAATAA
Found at i:124082 original size:2 final size:2
Alignment explanation
Indices: 124077--124103 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
124067 TTTTTTAATA
124077 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
124104 ATAATAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:124110 original size:6 final size:6
Alignment explanation
Indices: 124072--124151 Score: 81
Period size: 6 Copynumber: 12.3 Consensus size: 6
124062 AATTATTTTT
*
124072 TAATAA TATATATA TATATATA TATATATA TAATAA TAATTA TAATAA
1 TAATAA TA-ATA-A TA-ATA-A TA-ATA-A TAATAA TAATAA TAATAA
124120 TAATAA TAATAA TAATAA TAAT-A TAAATAA TA
1 TAATAA TAATAA TAATAA TAATAA T-AATAA TA
124152 TTCAAATGAA
Statistics
Matches: 68, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
5 2 0.03
6 39 0.57
7 8 0.12
8 19 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (6 bp):
TAATAA
Found at i:124115 original size:18 final size:17
Alignment explanation
Indices: 124072--124144 Score: 95
Period size: 15 Copynumber: 4.6 Consensus size: 17
124062 AATTATTTTT
124072 TAATAATATATATAT-A
1 TAATAATATATATATAA
124088 T-ATATATATATATATAA
1 TAATA-ATATATATATAA
124105 TAATAAT-TATA-ATAA
1 TAATAATATATATATAA
124120 TAATAATA-ATA-ATAA
1 TAATAATATATATATAA
124135 TAATAATATA
1 TAATAATATA
124145 AATAATATTC
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
15 29 0.56
16 16 0.31
17 4 0.08
18 3 0.06
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATAATATATATATAA
Found at i:124736 original size:109 final size:111
Alignment explanation
Indices: 124391--125007 Score: 990
Period size: 112 Copynumber: 5.5 Consensus size: 111
124381 GAATAATCTT
* * ** * *
124391 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAATTTTTTCTAGAA
1 TTCTCATTATGAACTTCTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCA
** * * * * *
124456 AAGTTGATCCATCAAGTGATGAATTTAAGCAAAATGTTGAACAAGTTC
65 CTGCTGATCCACCGAGGGATGAATTTAA-CAAAAAGTTGAACAAGTTC
*
124504 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTTTCATTATGAACTCTAACTGGCAC
1 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
*
124569 TGCTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAGTTC
66 TGCTGATCCACCGAGGGATGAATTTAA-CAAAAAGTTGAACAAGTTC
*
124616 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAATTCTTCTCATTATGAACTCTAACTGGCAC
1 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
124681 TGCTGATCCACCGAGGGATGAATTT-A-AAAAAGTTGAACAAGTTC
66 TGCTGATCCACCGAGGGATGAATTTAACAAAAAGTTGAACAAGTTC
*
124725 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGACAC
1 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
*
124790 TGCTGATCCACCGAGGGATGAATTTAAGCAAAAAGTTGAACAAGCTC
66 TGCTGATCCACCGAGGGATGAATTTAA-CAAAAAGTTGAACAAGTTC
124837 TTCTCATTAT-AACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
1 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
*
124901 T-CTGATCCACCAAGGGATGAATTTAAGCAAAAAGTTGAACAAGTTC
66 TGCTGATCCACCGAGGGATGAATTTAA-CAAAAAGTTGAACAAGTTC
124947 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTG
1 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTG
125008 AAAATGTTGA
Statistics
Matches: 478, Mismatches: 22, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
109 106 0.22
110 54 0.11
111 105 0.22
112 191 0.40
113 22 0.05
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (111 bp):
TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
TGCTGATCCACCGAGGGATGAATTTAACAAAAAGTTGAACAAGTTC
Found at i:124764 original size:221 final size:221
Alignment explanation
Indices: 124391--125008 Score: 1006
Period size: 221 Copynumber: 2.8 Consensus size: 221
124381 GAATAATCTT
* * ** * *
124391 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAATTTTTTCTAGAA
1 TTCTCATTATGAACTTCTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCA
** * * *
124456 AAGTTGATCCATCAAGTGATGAATTTAAGCAAAATGTTGAACAAGTTCTTCTCATTATGAACTTC
65 CTGCTGATCCACCAAGGGATGAATTTAA--AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTC
* * *
124521 TTCTTCTTCTTCAGATGAGTTCTTTTCATTATGAACTCTAACTGGCACTGCTGATCCACCGAGTG
127 TTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGACACTGCTGATCCACCGAGGG
*
124586 ATGAATTTAAGCAAAAAGTTGAACAAGTTC
192 ATGAATTTAAGCAAAAAGTTGAACAAGCTC
*
124616 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAATTCTTCTCATTATGAACTCTAACTGGCAC
1 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
*
124681 TGCTGATCCACCGAGGGATGAATTTAAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCT
66 TGCTGATCCACCAAGGGATGAATTTAAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCT
124746 TCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGACACTGCTGATCCACCGAGGGATGA
131 TCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGACACTGCTGATCCACCGAGGGATGA
124811 ATTTAAGCAAAAAGTTGAACAAGCTC
196 ATTTAAGCAAAAAGTTGAACAAGCTC
124837 TTCTCATTAT-AACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
1 TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
124901 T-CTGATCCACCAAGGGATGAATTTAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCT
66 TGCTGATCCACCAAGGGATGAATTT-A--AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCT
124965 TCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGA
128 TCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGA
125009 AAATGTTGAT
Statistics
Matches: 371, Mismatches: 19, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
219 22 0.06
220 55 0.15
221 131 0.35
222 84 0.23
224 57 0.15
225 22 0.06
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (221 bp):
TTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
TGCTGATCCACCAAGGGATGAATTTAAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCT
TCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGACACTGCTGATCCACCGAGGGATGA
ATTTAAGCAAAAAGTTGAACAAGCTC
Found at i:126543 original size:15 final size:14
Alignment explanation
Indices: 126523--126552 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
126513 TTGACCCTCC
126523 TTTTTCTTTTTCTTT
1 TTTTTCTTTTT-TTT
126538 TTTTTCTTTTTTTT
1 TTTTTCTTTTTTTT
126552 T
1 T
126553 CATTTCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTTCTTTTTTTT
Found at i:133904 original size:15 final size:15
Alignment explanation
Indices: 133881--133912 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
133871 TGCAATGAAT
133881 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
133896 AATGCATGTATGCAA
1 AATGAATGTATGCAA
133911 AA
1 AA
133913 GGTATTGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:137969 original size:19 final size:20
Alignment explanation
Indices: 137927--137972 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
137917 TATTGAAAAA
* *
137927 TAAATATATTAAAACATGAT
1 TAAATAAATTAAAACATAAT
137947 TAAATAAATTAAAA-ATAAT
1 TAAATAAATTAAAACATAAT
137966 TAAATAA
1 TAAATAA
137973 GATTTTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
TAAATAAATTAAAACATAAT
Found at i:138007 original size:20 final size:19
Alignment explanation
Indices: 137974--138016 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
137964 ATTAAATAAG
137974 ATTTTAATAAATAAATAAAT
1 ATTTTAATAAAT-AATAAAT
* * *
137994 ATTTTATTATATAATATAT
1 ATTTTAATAAATAATAAAT
138013 ATTT
1 ATTT
138017 ATGGCTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTTAATAAATAATAAAT
Found at i:138942 original size:14 final size:14
Alignment explanation
Indices: 138923--138965 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
138913 ACTCTGTATC
138923 TTCTTTTCTTTTT-T
1 TTCTTTT-TTTTTCT
138937 TTCTTTTTTTTTCT
1 TTCTTTTTTTTTCT
* *
138951 TTCTGTTTTTCTCT
1 TTCTTTTTTTTTCT
138965 T
1 T
138966 GGGTTGCTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 5 0.19
14 21 0.81
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.81
Consensus pattern (14 bp):
TTCTTTTTTTTTCT
Found at i:139401 original size:3 final size:3
Alignment explanation
Indices: 139393--139463 Score: 65
Period size: 3 Copynumber: 23.7 Consensus size: 3
139383 AATTATTTTT
* * * *
139393 TAA TAA TAA TTA T-A TATA TAA TAA TAA TAA TTA TAA TTA TAA TTA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
139438 TTA TAA TAA TAA TAA T-A TAAA TAA TA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TA
139464 TTCAAATGAA
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
2 4 0.07
3 48 0.84
4 5 0.09
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:139415 original size:15 final size:16
Alignment explanation
Indices: 139393--139463 Score: 85
Period size: 15 Copynumber: 4.5 Consensus size: 16
139383 AATTATTTTT
139393 TAATAATAATTATATATA
1 TAATAATAA-TA-ATATA
139411 TAATAATAATAAT-TA
1 TAATAATAATAATATA
* *
139426 TAATTATAATTAT-TA
1 TAATAATAATAATATA
139441 TAATAATAATAATATA
1 TAATAATAATAATATA
139457 -AATAATA
1 TAATAATA
139464 TTCAAATGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
15 33 0.69
16 4 0.08
17 2 0.04
18 9 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATAATAATAATATA
Found at i:140610 original size:263 final size:254
Alignment explanation
Indices: 140125--140678 Score: 778
Period size: 263 Copynumber: 2.1 Consensus size: 254
140115 TTTTATTATT
*
140125 TCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCTGGTCGATTTTTTTAAGTGTGATATTCGGGTC
1 TCGGGTCGGGTGAAACTTTATTTTGGTCGGGTC-GGTCGATTTTTTGAAGTGTGATATTCGGGTC
* * *
140190 GGGTCGAGTTCGGGTTTAGGGTGAAAAATATCAAACTCAAAAATATATATAATTTTACCCTATAT
65 -GG-CGAGTTCGGGTTTAGGGTGAAAAATACCAAACCCAAAAAAATATATAATTTTACCCTATAT
* *
140255 ATTTAGGAATAATTATAATAATACCCTTCTATATATAATTTTTTCAATTAAGTCATTGTTTTTAA
128 ATTTAGGAATAATGATAATAATACCCTTCTATATATAATTTTTTCAATTAAGTCACTGTTTTTAA
* * *
140320 TGAATAAAAATATTTTTTTTATTATTTCGGGTCA-GGTCGGGTTTCTAATTCATATATTCGGG
193 TGAATAAAAATAATTTTTTTATTATTTCAGGT-AGGGTCAGGTTTCTAATTCATATATTCGGG
*
140382 TCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGGATTGATTTTTTGAAGTGTGATATTCGGGTC
1 TCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGG-TCGATTTTTTGAAGTGTGATATTCGGGTC
140447 -G-G-GTTCGGGTTTAGGGTGAAAAATACCCGACCCAACCCGACCCAAAAAATATATAATTTTAC
65 GGCGAGTTCGGGTTTAGGGTGAAAAATA-CC-A---AACCC-A---AAAAAATATATAATTTTAC
* *
140509 CTTATATATTTAGGAATAATGATAATAATAGCCC-TCTATATTTAATTTTTTTTCAATTAAGTCA
121 CCTATATATTTAGGAATAATGATAATAATA-CCCTTCTATATATAA--TTTTTTCAATTAAGTCA
*
140573 CTGTTTTTATTGAATAAAAATAATTTTTTTATTATTTCAGGTAGGGTCAGGTTTCTAATTCATAT
183 CTGTTTTTAATGAATAAAAATAATTTTTTTATTATTTCAGGTAGGGTCAGGTTTCTAATTCATAT
140638 ATTCGGG
248 ATTCGGG
* *
140645 TCGTGTCAGGTGAAA-TTTATTTTGGTCGGGTCGG
1 TCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGG
140679 GTCTCGATGG
Statistics
Matches: 268, Mismatches: 15, Indels: 23
0.88 0.05 0.08
Matches are distributed among these distances:
252 23 0.09
253 2 0.01
254 1 0.00
255 1 0.00
256 2 0.01
257 64 0.24
258 1 0.00
261 56 0.21
262 23 0.09
263 95 0.35
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (254 bp):
TCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGGTCGATTTTTTGAAGTGTGATATTCGGGTCG
GCGAGTTCGGGTTTAGGGTGAAAAATACCAAACCCAAAAAAATATATAATTTTACCCTATATATT
TAGGAATAATGATAATAATACCCTTCTATATATAATTTTTTCAATTAAGTCACTGTTTTTAATGA
ATAAAAATAATTTTTTTATTATTTCAGGTAGGGTCAGGTTTCTAATTCATATATTCGGG
Found at i:142067 original size:13 final size:12
Alignment explanation
Indices: 142045--142091 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
142035 CATACATTTT
142045 TATATTTTTATA
1 TATATTTTTATA
142057 TATATTTTT-TA
1 TATATTTTTATA
142068 TAT-TTTATTATA
1 TATATTT-TTATA
*
142080 CTATATATTTAT
1 -TATATTTTTAT
142092 TTTCATTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
10 3 0.10
11 7 0.23
12 11 0.37
13 7 0.23
14 2 0.07
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (12 bp):
TATATTTTTATA
Found at i:142067 original size:21 final size:21
Alignment explanation
Indices: 142041--142106 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
142031 TATACATACA
142041 TTTTTATATTTTTATATATAT
1 TTTTTATATTTTTATATATAT
142062 TTTTTATA-TTTTATTATACTAT
1 TTTTTATATTTTTA-TATA-TAT
* * *
142084 ATATT-TATTTTCAT-TATAT
1 TTTTTATATTTTTATATATAT
142103 TTTT
1 TTTT
142107 AGTTTCTTTG
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
19 5 0.14
20 7 0.19
21 15 0.41
22 10 0.27
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTATATTTTTATATATAT
Found at i:142101 original size:17 final size:16
Alignment explanation
Indices: 142053--142107 Score: 51
Period size: 17 Copynumber: 3.5 Consensus size: 16
142043 TTTATATTTT
*
142053 TATATATATTTT-TTA
1 TATATTTATTTTATTA
* *
142068 TAT-TTTATTATACTA
1 TATATTTATTTTATTA
142083 TATATTTATTTTCATTA
1 TATATTTATTTT-ATTA
*
142100 TATTTTTA
1 TATATTTA
142108 GTTTCTTTGC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
14 6 0.19
15 8 0.26
16 7 0.23
17 10 0.32
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (16 bp):
TATATTTATTTTATTA
Found at i:142213 original size:16 final size:15
Alignment explanation
Indices: 142174--142220 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
142164 CTTTTGTATA
142174 TATATTTTATCTTCATT
1 TATATTTTA--TTCATT
142191 TATATTTTATTCATT
1 TATATTTTATTCATT
*
142206 TCATATTTTTTTCAT
1 T-ATATTTTATTCAT
142221 CCATTATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 7 0.25
16 12 0.43
17 9 0.32
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (15 bp):
TATATTTTATTCATT
Found at i:146513 original size:16 final size:15
Alignment explanation
Indices: 146489--146552 Score: 69
Period size: 16 Copynumber: 4.2 Consensus size: 15
146479 CAAAAAGGGC
146489 AAAAACAAAAAAGAA
1 AAAAACAAAAAAGAA
*
146504 AAGAAGCAAAAAAGAA
1 AA-AAACAAAAAAGAA
*
146520 AACAA-AAAAAAGAA
1 AAAAACAAAAAAGAA
146534 CAAAAATC-AAAAAGAA
1 -AAAAA-CAAAAAAGAA
146550 AAA
1 AAA
146553 GGGACAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
14 9 0.22
15 10 0.24
16 22 0.54
ACGTcount: A:0.81, C:0.08, G:0.09, T:0.02
Consensus pattern (15 bp):
AAAAACAAAAAAGAA
Found at i:146527 original size:12 final size:13
Alignment explanation
Indices: 146492--146539 Score: 55
Period size: 12 Copynumber: 3.6 Consensus size: 13
146482 AAAGGGCAAA
146492 AACAAAAAAGAAAAG
1 AACAAAAAAG--AAG
146507 AAGCAAAAAAGAA-
1 AA-CAAAAAAGAAG
146520 AACAAAAAA-AAG
1 AACAAAAAAGAAG
146532 AACAAAAA
1 AACAAAAA
146540 TCAAAAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 2 0.06
12 15 0.48
13 2 0.06
14 2 0.06
15 2 0.06
16 8 0.26
ACGTcount: A:0.81, C:0.08, G:0.10, T:0.00
Consensus pattern (13 bp):
AACAAAAAAGAAG
Found at i:146531 original size:30 final size:30
Alignment explanation
Indices: 146495--146551 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
146485 GGGCAAAAAC
*
146495 AAAAAAGAA-AAGAAGCAAAAAAGAAAACAA
1 AAAAAAGAACAAAAAGC-AAAAAGAAAACAA
*
146525 AAAAAAGAACAAAAATCAAAAAGAAAA
1 AAAAAAGAACAAAAAGCAAAAAGAAAA
146552 AGGGACAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.81, C:0.07, G:0.11, T:0.02
Consensus pattern (30 bp):
AAAAAAGAACAAAAAGCAAAAAGAAAACAA
Found at i:147226 original size:22 final size:22
Alignment explanation
Indices: 147152--147228 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
147142 GCTACCCCAT
*
147152 CAAACCGTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
* *
147174 CAAACCTATGAGCATCACATGC
1 CAAACCTTTGAGCATCAAATGC
147196 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
147218 CAAACCTTTGA
1 CAAACCTTTGA
147229 CCAAGAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:149237 original size:106 final size:106
Alignment explanation
Indices: 147977--149235 Score: 1944
Period size: 106 Copynumber: 11.9 Consensus size: 106
147967 GAGAATGGAT
* * * *
147977 TTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAACTTCCCAAATTCAGAGCTAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
*
148042 CAACTTCACGGCGAAGGATATTGGACTCCAGACAACGCAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
*
148083 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
* * * *
148148 TAACTTCATAACGAAGGATATTGGACTCCATACAACGCAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
* * * * *
148189 TTCAACTTCACGACGAAGGGACCGTTGGTTGTTAATAAACAATTTCCCTATTTCAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
* *
148254 CAACTTCACAGCGAATGATATTGGACTCAAGACAACGCAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
* * *
148295 TTCAACTTCATGATGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
*
148360 CAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
* *
148401 TTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
* * **
148466 CAACTTTACAACGAAGGATATTGGACTCCAGACAATACAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
148507 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
*
148572 CAACTTCACAGCGAAGGATATTGGACTCGAGACAACGCAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
* * *
148613 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATAATTTCCCAATTTCGGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
* *
148678 CAACTTCACAGCGAAAGATATTGGACTCCAGACAAAGCAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
* * * *
148719 TTCAACTTCACGACGAAGGGACCGCTGGTTGTTAACAAATAATTTCCCAATTTCGGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
148784 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
* * *
148825 TTCAACTTCACGACGAAGGGACCGCTAGTTGTCAACAAACAACTTCTCAATTTCATAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
** *
148890 CAACTTCACAATGAAGGATATTGGACTCAAGACAACGCAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
148931 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
* *
148996 CAACTTCACAGCGAAGGATATTGGACTCGAGACAATGCAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
* * **
149037 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATAATTTCCCAATTTTGGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
* * * * *
149102 CAACTTCACAACAAAGGATATTAGACTCGAGACAACACAAG
66 CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
* * * * ** *
149143 TTCAACTTCACAACGAAGGGACTGCTGGTTGTCAACAAATAATTTCCTGATTCCAGAGCCAATTT
1 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
*
149208 CAACTTCAC-GACGGAGGATATTGGACTC
66 CAACTTCACAG-CGAAGGATATTGGACTC
149236 GAAACAATGC
Statistics
Matches: 1062, Mismatches: 90, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
106 1062 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (106 bp):
TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
CAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
Found at i:150491 original size:2 final size:2
Alignment explanation
Indices: 150484--150514 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
150474 TAACCCTTAC
150484 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
150515 TTTAATTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:150593 original size:22 final size:22
Alignment explanation
Indices: 150550--150593 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
150540 TTTTTTTGCG
*
150550 TTATATTATATATTTTCCTATTA
1 TTATATTATATATTAT-CTATTA
150573 TTATATATATATATTAT-TATT
1 TTATAT-TATATATTATCTATT
150594 TTTTTATCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (22 bp):
TTATATTATATATTATCTATTA
Found at i:150752 original size:22 final size:22
Alignment explanation
Indices: 150720--150768 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
150710 ATTTTTCATT
*
150720 TATTTATTATTATTATTA-TTAC-
1 TATTTAGTATT-TT-TTATTTACA
150742 TATTTAGTATTTTTTATTTACA
1 TATTTAGTATTTTTTATTTACA
150764 TATTT
1 TATTT
150769 TTATGTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 3 0.12
21 6 0.25
22 15 0.62
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (22 bp):
TATTTAGTATTTTTTATTTACA
Found at i:150807 original size:22 final size:21
Alignment explanation
Indices: 150749--150834 Score: 77
Period size: 22 Copynumber: 4.0 Consensus size: 21
150739 TACTATTTAG
* *
150749 TATTTTTTATTTACATATTTT
1 TATTTTTTATTTATATTTTTT
*
150770 TATGTTTTTATATATATTTTTT
1 TAT-TTTTTATTTATATTTTTT
150792 TATTATTTTATTTATACTATTTATT
1 TATT-TTTTATTTATA-T-TTT-TT
*
150817 TA-TTTTCA-TTATATTTTT
1 TATTTTTTATTTATATTTTT
150835 ATTTTCTTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
19 1 0.02
20 3 0.05
21 5 0.09
22 33 0.60
23 5 0.09
24 4 0.07
25 4 0.07
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.71
Consensus pattern (21 bp):
TATTTTTTATTTATATTTTTT
Found at i:150830 original size:44 final size:43
Alignment explanation
Indices: 150749--150834 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 43
150739 TACTATTTAG
* *
150749 TATTTTTTATTTACATATTTTTATGTTTTTATATATATTTTTT
1 TATTTTTTATTTACATATTTTTATATTTTCATATATATTTTTT
*
150792 TATTATTTTATTTATACTATTTATT-TATTTTCAT-TATATTTTT
1 TATT-TTTTATTTACA-TATTT-TTATATTTTCATATATATTTTT
150835 ATTTTCTTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
43 4 0.11
44 19 0.51
45 12 0.32
46 2 0.05
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.71
Consensus pattern (43 bp):
TATTTTTTATTTACATATTTTTATATTTTCATATATATTTTTT
Found at i:159501 original size:31 final size:32
Alignment explanation
Indices: 159466--159527 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
159456 TAAGAAAAGT
*
159466 TTGTTTTAGGTATATGTGTATG-TTTTATTTC
1 TTGTTTTAGGCATATGTGTATGTTTTTATTTC
*
159497 TTGTTTTAGGCGTATGTGTATGTTTTTATTT
1 TTGTTTTAGGCATATGTGTATGTTTTTATTT
159528 ACTGTTTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 20 0.71
32 8 0.29
ACGTcount: A:0.15, C:0.03, G:0.21, T:0.61
Consensus pattern (32 bp):
TTGTTTTAGGCATATGTGTATGTTTTTATTTC
Found at i:159634 original size:26 final size:27
Alignment explanation
Indices: 159586--159637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
159576 GGTATGCTTC
*
159586 ATGTCATGTTTAATGGTTTGTTGTTTA
1 ATGTAATGTTTAATGGTTTGTTGTTTA
159613 ATGTAATGTTT-ATGGTTTGTTGTTT
1 ATGTAATGTTTAATGGTTTGTTGTTT
159638 TTATAGTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.17, C:0.02, G:0.23, T:0.58
Consensus pattern (27 bp):
ATGTAATGTTTAATGGTTTGTTGTTTA
Found at i:162304 original size:20 final size:22
Alignment explanation
Indices: 162263--162314 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
162253 ACCTTAAATT
162263 ATTTAAAAATAATATTTGAT-A
1 ATTTAAAAATAATATTTGATAA
*
162284 ATTTAAAAAT-GTATATT-ATAA
1 ATTTAAAAATAATAT-TTGATAA
162305 ATTGTAAAAA
1 ATT-TAAAAA
162315 ATGGTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 5 0.19
21 16 0.59
22 6 0.22
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (22 bp):
ATTTAAAAATAATATTTGATAA
Found at i:169324 original size:20 final size:22
Alignment explanation
Indices: 169302--169342 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
169292 ATAATTATTT
169302 AAAAA-ATTAAATAAAAATATA
1 AAAAATATTAAATAAAAATATA
*
169323 AAAAATATTTAATAAAAATA
1 AAAAATATTAAATAAAAATA
169343 ATTTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (22 bp):
AAAAATATTAAATAAAAATATA
Found at i:170436 original size:17 final size:18
Alignment explanation
Indices: 170403--170436 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
170393 TTAATGATCA
*
170403 TTAATATTTCTCAAAATT
1 TTAAAATTTCTCAAAATT
170421 TTAAAATTTC-CAAAAT
1 TTAAAATTTCTCAAAAT
170437 ACTTGAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (18 bp):
TTAAAATTTCTCAAAATT
Found at i:195185 original size:39 final size:39
Alignment explanation
Indices: 195131--195213 Score: 112
Period size: 39 Copynumber: 2.1 Consensus size: 39
195121 TACTTTGACG
* * *
195131 AGATGTAGTAGGACTAGTTTGAGATTGATGCATAGAGAA
1 AGATGTAGTACGACTAGTTTGAGACTGATGCACAGAGAA
* * *
195170 AGATGTAGTACGACTATTTTGAGACTGGTGCACAGAGGA
1 AGATGTAGTACGACTAGTTTGAGACTGATGCACAGAGAA
195209 AGATG
1 AGATG
195214 AAATAGGTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (39 bp):
AGATGTAGTACGACTAGTTTGAGACTGATGCACAGAGAA
Found at i:199154 original size:16 final size:17
Alignment explanation
Indices: 199111--199150 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
199101 TTAAATCGTT
199111 TATTTTAATTTTAATAA
1 TATTTTAATTTTAATAA
199128 TATTTTAATTTT-ATAA
1 TATTTTAATTTTAATAA
199144 T-TTTTAA
1 TATTTTAA
199151 ATTTGAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 6 0.26
16 5 0.22
17 12 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTTTAATTTTAATAA
Found at i:200837 original size:19 final size:19
Alignment explanation
Indices: 200810--200846 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
200800 AATTGACCAA
*
200810 CAAAATCGCAATGCGATCG
1 CAAAATCGCAACGCGATCG
*
200829 CAAATTCGCAACGCGATC
1 CAAAATCGCAACGCGATC
200847 TCCATTATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.30, G:0.19, T:0.16
Consensus pattern (19 bp):
CAAAATCGCAACGCGATCG
Found at i:200945 original size:21 final size:21
Alignment explanation
Indices: 200894--200946 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
200884 ATTATGACTA
200894 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
200915 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
200936 TCGCAATGCGA
1 TCGCAATGCGA
200947 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:200961 original size:20 final size:21
Alignment explanation
Indices: 200936--200987 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
200926 TTTTCCCAAT
*
200936 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
200956 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
200977 TCGCAATGCGA
1 TCGCAATGCGA
200988 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:201007 original size:20 final size:20
Alignment explanation
Indices: 200976--201130 Score: 123
Period size: 20 Copynumber: 7.7 Consensus size: 20
200966 AATTTGGAAA
*
200976 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * *
200996 ATCGTAAAGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
201017 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
201037 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * **
201057 TTCGCAACGCGATTCCAACT
1 ATCGCAACGCGATACTGACT
* * *
201077 TTCGCAACGTGATTCTGACT
1 ATCGCAACGCGATACTGACT
* * * *
201097 TTTGCAACGAGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
201117 ATCGCAACGAGATA
1 ATCGCAACGCGATA
201131 ATACAGAATC
Statistics
Matches: 112, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
19 2 0.02
20 95 0.85
21 13 0.12
22 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:201018 original size:41 final size:41
Alignment explanation
Indices: 200973--201050 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
200963 GCGAATTTGG
* *
200973 AAAATCGCAATGCGATACTGACTATCGTAAAGCGATAATAC
1 AAAATCGCAACGCGATACTGACTATCGCAAAGCGATAATAC
* *
201014 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATA
1 AAAATCGCAACGCGATACTGACTATCGCAAAGCGATA
201051 CTGACTTTCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (41 bp):
AAAATCGCAACGCGATACTGACTATCGCAAAGCGATAATAC
Found at i:201078 original size:40 final size:40
Alignment explanation
Indices: 201018--201130 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 40
201008 TAATACAAAA
* *
201018 TCGCAACGCGATACTGACTTTCGCAACGCGATACTGACTT
1 TCGCAACGCGATTCTGACTTTCGCAACGAGATACTGACTT
** * *
201058 TCGCAACGCGATTCCAACTTTCGCAACGTGATTCTGACTT
1 TCGCAACGCGATTCTGACTTTCGCAACGAGATACTGACTT
* * *
201098 TTGCAACGAGATTCTGACTATCGCAACGAGATA
1 TCGCAACGCGATTCTGACTTTCGCAACGAGATA
201131 ATACAGAATC
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (40 bp):
TCGCAACGCGATTCTGACTTTCGCAACGAGATACTGACTT
Found at i:201196 original size:16 final size:16
Alignment explanation
Indices: 201175--201231 Score: 69
Period size: 16 Copynumber: 3.3 Consensus size: 16
201165 ACTCATTCTA
201175 TCTCCATCTATCACTC
1 TCTCCATCTATCACTC
*
201191 TCTCCATCTATCTCGTTCC
1 TCTCCATCTATCAC--T-C
201210 ATCTCCATCTATCACTC
1 -TCTCCATCTATCACTC
201227 TCTCC
1 TCTCC
201232 GGCGACATCC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
16 18 0.51
17 1 0.03
18 2 0.06
19 1 0.03
20 13 0.37
ACGTcount: A:0.16, C:0.44, G:0.02, T:0.39
Consensus pattern (16 bp):
TCTCCATCTATCACTC
Found at i:201840 original size:24 final size:24
Alignment explanation
Indices: 201813--201866 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
201803 GTATTCGAAA
*
201813 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* *
201837 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
201861 TTTGAT
1 TTTGAT
201867 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:202056 original size:12 final size:12
Alignment explanation
Indices: 202039--202064 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
202029 ATATAATCCT
202039 GAAGAAGAAAAA
1 GAAGAAGAAAAA
202051 GAAGAAGAAAAA
1 GAAGAAGAAAAA
202063 GA
1 GA
202065 CCCCGAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:204333 original size:20 final size:20
Alignment explanation
Indices: 204308--204363 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
204298 CAATGGGGAA
* *
204308 ATCGCAATGCGAAAATGGCT
1 ATCGCAACGCGAAAATAGCT
204328 ATCGCAACGCGAAAATAGCT
1 ATCGCAACGCGAAAATAGCT
*
204348 ATCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
204364 CGCAATGCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATAGCT
Found at i:204457 original size:20 final size:20
Alignment explanation
Indices: 204432--204469 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
204422 GCGATTCTCT
204432 TGTTGCGATAGTCAGTTTCG
1 TGTTGCGATAGTCAGTTTCG
*
204452 TGTTGCGATAGTCTGTTT
1 TGTTGCGATAGTCAGTTT
204470 TGCCTTCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.13, G:0.29, T:0.45
Consensus pattern (20 bp):
TGTTGCGATAGTCAGTTTCG
Found at i:206024 original size:41 final size:42
Alignment explanation
Indices: 205979--206070 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
205969 CCTCTTCAAC
* *
205979 GATGACAGTGGCCTCTTGAACG-GTGGGGGGGACTCTTGAGA
1 GATGACAGGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGA
* * *
206020 GATGATAGGGGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGA
206062 GATGACAGG
1 GATGACAGG
206071 TGAGTTAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 20 0.45
42 24 0.55
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGAGTGGAGGGGACTCTTGAGA
Found at i:206050 original size:21 final size:20
Alignment explanation
Indices: 205991--206059 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
205981 TGACAGTGGC
* *
205991 CTCTTGAACGGTGGGGGGGA
1 CTCTTGAACGATGGAGGGGA
* *
206011 CTCTTGAGA-GATGATAGGGGC
1 CTCTTGA-ACGATG-GAGGGGA
206032 CTCTTGAACGATTGGAGGGGA
1 CTCTTGAACGA-TGGAGGGGA
206053 CTCTTGA
1 CTCTTGA
206060 GGGATGACAG
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
20 11 0.28
21 26 0.67
22 2 0.05
ACGTcount: A:0.20, C:0.16, G:0.39, T:0.25
Consensus pattern (20 bp):
CTCTTGAACGATGGAGGGGA
Found at i:206480 original size:19 final size:19
Alignment explanation
Indices: 206406--206511 Score: 104
Period size: 20 Copynumber: 5.4 Consensus size: 19
206396 ATTGTTTACT
* * *
206406 TCGCAACACGAAACTTACTT
1 TCGCAACGCGAAA-TGACTA
206426 TCGCAACGCGAAAATGACTA
1 TCGCAACGCG-AAATGACTA
*
206446 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGACTA
**
206466 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGACTA
* **
206485 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGACTA
206504 TCGCAACG
1 TCGCAACG
206512 ACAAAATCGC
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
19 32 0.43
20 39 0.52
21 4 0.05
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.16
Consensus pattern (19 bp):
TCGCAACGCGAAATGACTA
Found at i:206578 original size:14 final size:14
Alignment explanation
Indices: 206559--206617 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
206549 TTTCATTTCG
206559 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
206573 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
*
206590 CGCATTGCCATTTTGT
1 CG--TTGCGATTTTGT
206606 CGTTGCGATTTT
1 CGTTGCGATTTT
206618 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
14 17 0.47
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 5 0.14
ACGTcount: A:0.10, C:0.19, G:0.22, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:206584 original size:33 final size:33
Alignment explanation
Indices: 206542--206633 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
206532 ACAAATCACA
*
206542 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
*
206575 TTGCGATTTTCATTTCGCATTGCCATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
206608 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
206634 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.12, C:0.20, G:0.21, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:206652 original size:20 final size:19
Alignment explanation
Indices: 206618--206672 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
206608 TTGCGATTTT
*
206618 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
206637 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
206657 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
206673 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:207236 original size:18 final size:18
Alignment explanation
Indices: 207213--207260 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
207203 CGGGTCGATC
207213 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
*
207231 AGGTGATAGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
207249 AGGTGATGGCTC
1 AGGTGATGGCTC
207261 CCTAAAGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.12, G:0.46, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:208677 original size:22 final size:22
Alignment explanation
Indices: 208650--208693 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
208640 GATGGAGATA
208650 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
208672 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
208694 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:220986 original size:20 final size:21
Alignment explanation
Indices: 220950--220991 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
220940 AGTTTGGCGC
*
220950 ATTAACCAATACAAACC-GAT
1 ATTAACCAACACAAACCAGAT
220970 ATTAAGCCAACAC-AACCAGAT
1 ATTAA-CCAACACAAACCAGAT
220991 A
1 A
220992 CCTATTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.26, G:0.07, T:0.17
Consensus pattern (21 bp):
ATTAACCAACACAAACCAGAT
Found at i:221111 original size:24 final size:24
Alignment explanation
Indices: 221061--221113 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
221051 TATAGTAGTT
**
221061 TACAACACAATAAAATTACAGACG
1 TACAACACAATAAAAGCACAGACG
* *
221085 TACAACACAATAAAAGCAGAGAGG
1 TACAACACAATAAAAGCACAGACG
221109 TACAA
1 TACAA
221114 AGTTAATAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.19, G:0.13, T:0.13
Consensus pattern (24 bp):
TACAACACAATAAAAGCACAGACG
Found at i:230256 original size:20 final size:19
Alignment explanation
Indices: 230231--230284 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
230221 GCGAAATAAA
230231 AATCGCAACGCGATCTCCAG
1 AATCGCAACGCGATC-CCAG
** *
230251 AATCGCAAATCAGTTCCCAG
1 AATCGCAACGC-GATCCCAG
230271 AATCGCAACGCGAT
1 AATCGCAACGCGAT
230285 TATGAAGAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (19 bp):
AATCGCAACGCGATCCCAG
Found at i:230295 original size:21 final size:21
Alignment explanation
Indices: 230269--230366 Score: 69
Period size: 21 Copynumber: 4.7 Consensus size: 21
230259 ATCAGTTCCC
230269 AGAATCGCAACGCGATTATGA
1 AGAATCGCAACGCGATTATGA
*
230290 AGAATCGCAATGCGA-TA-GTA
1 AGAATCGCAACGCGATTATG-A
* ** * **
230310 CA-AATTAGCATTGCGATTTTCC
1 -AGAA-TCGCAACGCGATTATGA
*
230332 AGAATCGCAACGCGAATATGA
1 AGAATCGCAACGCGATTATGA
230353 A-AATCGCAACGCGA
1 AGAATCGCAACGCGA
230367 ACATATAAAT
Statistics
Matches: 58, Mismatches: 13, Indels: 13
0.69 0.15 0.15
Matches are distributed among these distances:
19 1 0.02
20 18 0.31
21 36 0.62
22 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.20
Consensus pattern (21 bp):
AGAATCGCAACGCGATTATGA
Found at i:230515 original size:40 final size:41
Alignment explanation
Indices: 230395--230565 Score: 179
Period size: 40 Copynumber: 4.2 Consensus size: 41
230385 GATTCTGACT
* * * * * *
230395 ATCGCAACGAGTATCCGTAAAATCACAACGCGTATTCATAA
1 ATCGCAACGCGAATACGTAAAATCGCAACGCGTATCCGTAA
230436 ATCGCAACGAC-AATACGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACG-CGAATACGTAAAATCGCAACGCGTATCCGTAA
* * * *
230477 ATTGCAACGCGTATCCGT-AAATTGCAACGCGTATCCGTAA
1 ATCGCAACGCGAATACGTAAAATCGCAACGCGTATCCGTAA
* * *
230517 ATCGCAATGCGAATACGT-AAATCGCAATGCG-ATTACGTAA
1 ATCGCAACGCGAATACGTAAAATCGCAACGCGTA-TCCGTAA
230557 ATCGCAACG
1 ATCGCAACG
230566 AGATTCTGAC
Statistics
Matches: 109, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.56
41 47 0.43
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (41 bp):
ATCGCAACGCGAATACGTAAAATCGCAACGCGTATCCGTAA
Found at i:230570 original size:20 final size:20
Alignment explanation
Indices: 230334--230570 Score: 121
Period size: 20 Copynumber: 11.8 Consensus size: 20
230324 GATTTTCCAG
* * *
230334 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGATTACGTA
** **
230354 AATCGCAACGCGAACATATA
1 AATCGCAACGCGATTACGTA
*
230374 AATCGCAATGCGATT-C-TGA
1 AATCGCAACGCGATTACGT-A
* * *
230393 CTATCGCAACGAG-TATCCGTAA
1 -AATCGCAACGCGAT-TACGT-A
* *
230415 AATCACAACGCGTATT-CATA
1 AATCGCAACGCG-ATTACGTA
*
230435 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGATTACGT-A
*
230456 AATCGCAACGCG-TATCCGTA
1 AATCGCAACGCGAT-TACGTA
* *
230476 AATTGCAACGCG-TATCCGTA
1 AATCGCAACGCGAT-TACGTA
* *
230496 AATTGCAACGCG-TATCCGTA
1 AATCGCAACGCGAT-TACGTA
* *
230516 AATCGCAATGCGAATACGTA
1 AATCGCAACGCGATTACGTA
*
230536 AATCGCAATGCGATTACGTA
1 AATCGCAACGCGATTACGTA
*
230556 AATCGCAACGAGATT
1 AATCGCAACGCGATT
230571 CTGACTATCG
Statistics
Matches: 176, Mismatches: 28, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
18 1 0.01
19 4 0.02
20 139 0.79
21 28 0.16
22 3 0.02
23 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (20 bp):
AATCGCAACGCGATTACGTA
Found at i:231434 original size:24 final size:24
Alignment explanation
Indices: 231407--231460 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
231397 GTATTCGAAA
231407 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
231431 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
231455 TTTGAT
1 TTTGAT
231461 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:233972 original size:19 final size:18
Alignment explanation
Indices: 233950--234118 Score: 105
Period size: 19 Copynumber: 9.7 Consensus size: 18
233940 ATTAATGTCT
233950 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
233969 ATCGCAA-CG--A-GAGA
1 ATCGCAAGCGAAATGAAA
233983 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
234002 ATCACAA-CG---TGAAA
1 ATCGCAAGCGAAATGAAA
*
234016 ATCGCAACGCGAATATG-AT
1 ATCGCAA-GCGAA-ATGAAA
**
234035 ATCGCAACGCGGAAAT-ACT
1 ATCGCAA-GC-GAAATGAAA
234054 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
234073 ATCGCAA-CG--A-GAGA
1 ATCGCAAGCGAAATGAAA
234087 ATCGCAAAGCGAAATGAAA
1 ATCGC-AAGCGAAATGAAA
234106 ATCGCAACGCGAA
1 ATCGCAA-GCGAA
234119 TTTAGTTTCG
Statistics
Matches: 119, Mismatches: 11, Indels: 40
0.70 0.06 0.24
Matches are distributed among these distances:
14 29 0.24
15 4 0.03
16 6 0.05
17 6 0.05
18 9 0.08
19 60 0.50
20 5 0.04
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.14
Consensus pattern (18 bp):
ATCGCAAGCGAAATGAAA
Found at i:233992 original size:33 final size:33
Alignment explanation
Indices: 233950--234114 Score: 197
Period size: 33 Copynumber: 4.8 Consensus size: 33
233940 ATTAATGTCT
233950 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* * *
233983 ATCGCAATGCGAAATGAAAATCACAACGTGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* * * *
234016 ATCGCAACGCGAATATG-ATATCGCAACGCGGAAATA
1 ATCGCAATGCGAA-ATGAAAATCGCAA--C-GAGAGA
234052 CTATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 --ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
234087 ATCGCAAAGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
234115 CGAATTTAGT
Statistics
Matches: 111, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
33 76 0.68
34 3 0.03
35 5 0.05
36 4 0.04
37 3 0.03
38 20 0.18
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:234067 original size:71 final size:71
Alignment explanation
Indices: 233950--234116 Score: 211
Period size: 71 Copynumber: 2.4 Consensus size: 71
233940 ATTAATGTCT
* * *
233950 ATCGCAATGCGAAATGAAAATCGCAA--C-GAGAGA--ATCGCAATGCGAAATGAAAATCACAAC
1 ATCGCAAAGCGAAATGAAAATCGCAACGCGGAAATACTATCGCAATGCGAAATGAAAATCACAAC
*
234010 GTGAAA
66 GAGAAA
* * *
234016 ATCGCAACGCGAATATG-ATATCGCAACGCGGAAATACTATCGCAATGCGAAATGAAAATCGCAA
1 ATCGCAAAGCGAA-ATGAAAATCGCAACGCGGAAATACTATCGCAATGCGAAATGAAAATCACAA
*
234080 CGAGAGA
65 CGAGAAA
234087 ATCGCAAAGCGAAATGAAAATCGCAACGCG
1 ATCGCAAAGCGAAATGAAAATCGCAACGCG
234117 AATTTAGTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
66 20 0.24
67 3 0.04
68 1 0.01
69 4 0.05
70 3 0.04
71 54 0.64
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.14
Consensus pattern (71 bp):
ATCGCAAAGCGAAATGAAAATCGCAACGCGGAAATACTATCGCAATGCGAAATGAAAATCACAAC
GAGAAA
Found at i:234136 original size:19 final size:19
Alignment explanation
Indices: 234114--234188 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 19
234104 AAATCGCAAC
*
234114 GCGAATTT-AGTTTCGCGTT
1 GCGAATTTCA-TTTCGCATT
*
234133 GCGATTTTCATTTCGCATT
1 GCGAATTTCATTTCGCATT
*
234152 GCG-A-TTC-TCTCG--TT
1 GCGAATTTCATTTCGCATT
*
234166 GCGATTTTCATTTCGCATT
1 GCGAATTTCATTTCGCATT
234185 GCGA
1 GCGA
234189 TAGTCATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
14 5 0.11
16 7 0.16
17 7 0.16
19 24 0.55
20 1 0.02
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.43
Consensus pattern (19 bp):
GCGAATTTCATTTCGCATT
Found at i:234197 original size:19 final size:19
Alignment explanation
Indices: 234124--234189 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
234114 GCGAATTTAG
*
234124 TTTCGCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
234143 TTTCGCATTGCGA--TTC-
1 TTTCGCATTGCGATTTTCA
*
234159 TCTCG--TTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
234176 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
234190 AGTCATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 6 0.15
16 7 0.18
17 7 0.18
19 19 0.49
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (19 bp):
TTTCGCATTGCGATTTTCA
Found at i:234306 original size:14 final size:14
Alignment explanation
Indices: 234287--234323 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
234277 CATCAATTAA
234287 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
234301 ACAAATCATCTTTT
1 ACAAATCAACTTTT
234315 ACAAATCAA
1 ACAAATCAA
234324 TTAAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:236228 original size:19 final size:19
Alignment explanation
Indices: 236169--236229 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
236159 AAAAATGACT
236169 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
236188 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
*
236202 ATCACAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
236221 ATCGCAACG
1 ATCGCAACG
236230 TTATAGTTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
14 9 0.27
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 18 0.55
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.10
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:236259 original size:19 final size:19
Alignment explanation
Indices: 236235--236305 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
236225 CAACGTTATA
*
236235 GTTTCGCGTTGCGATTTTG
1 GTTTCGCGTTGCGATTTTC
* *
236254 GTTTCGTGTTGCAATTTTC
1 GTTTCGCGTTGCGATTTTC
*
236273 ATTTCGCGTTGCGA--TTC
1 GTTTCGCGTTGCGATTTTC
* *
236290 ATTTCACGTTGCGATT
1 GTTTCGCGTTGCGATT
236306 CATTTCACGT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
17 16 0.37
19 27 0.63
ACGTcount: A:0.11, C:0.18, G:0.24, T:0.46
Consensus pattern (19 bp):
GTTTCGCGTTGCGATTTTC
Found at i:236292 original size:17 final size:17
Alignment explanation
Indices: 236270--236321 Score: 95
Period size: 17 Copynumber: 3.1 Consensus size: 17
236260 TGTTGCAATT
*
236270 TTCATTTCGCGTTGCGA
1 TTCATTTCACGTTGCGA
236287 TTCATTTCACGTTGCGA
1 TTCATTTCACGTTGCGA
236304 TTCATTTCACGTTGCGA
1 TTCATTTCACGTTGCGA
236321 T
1 T
236322 AGTCATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.42
Consensus pattern (17 bp):
TTCATTTCACGTTGCGA
Found at i:236592 original size:92 final size:93
Alignment explanation
Indices: 236409--236775 Score: 535
Period size: 92 Copynumber: 4.1 Consensus size: 93
236399 ATGGATTGCA
* * *
236409 TTAC-TTCAACCAAAAGACAAAACAAAGATAAATACTAACTTCA-GGTATTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAG-ATACACAGT
236472 TTAGCAGAATTGGCAGCAACCGAACAAAT
65 TTAGCAGAATTGGCAGCAACCGAACAAAT
236501 TTACTTTCAACCAAAAGAC-AAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAG-ATACACAGT
236565 TTAGCAGAATTGGCAGCAACCG-ACAAA-
65 TTAGCAGAATTGGCAGCAACCGAACAAAT
236592 TTACTTTCAACCAAAA-AC--AACAAAGAC-AATACTAACTTCACAGTGTTAAAGATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGATACACAGTT
*
236653 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
* *
236681 TTAC-TTCAGCCAAAAGACAAAACAAAAGACAAATACT-ACTTCACAGTGTTAAAGATAAACAGT
1 TTACTTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGATACACAGT
* * *
236744 TT-GTAGTATTGGCAGCAACCGAA-TAAT
65 TTAGCAGAATTGGCAGCAACCGAACAAAT
236771 TTACT
1 TTACT
236776 AAGCAATCTA
Statistics
Matches: 256, Mismatches: 9, Indels: 21
0.90 0.03 0.07
Matches are distributed among these distances:
87 31 0.12
88 38 0.15
89 15 0.06
90 9 0.04
91 38 0.15
92 65 0.25
93 60 0.23
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:236732 original size:180 final size:180
Alignment explanation
Indices: 236408--236765 Score: 539
Period size: 180 Copynumber: 2.0 Consensus size: 180
236398 AATGGATTGC
*
236408 ATTACTTCAACCAAAAGACAAAACAAAGATAAATACTAACTTCAGGTATTAAAGAATACACAGTT
1 ATTACTTCAACCAAAAGAC-AAACAAAGATAAATACTAACTTCAAGTATTAAAGAATACACAGTT
236473 TAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAACAAAGACAAATACTA
65 TAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAACAAAGACAAATACTA
*
236538 ACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGACAA
130 ACTTCACAGTGTTAAAG-ATAAACAGTTT-GCAGAATTGGCAGCAACCGACAA
* *
236591 ATTACTTTCAACCAAAA-AC-AACAAAGA-CAATACTAACTTCACAGTGTTAAAG-ATACACAGT
1 ATTAC-TTCAACCAAAAGACAAACAAAGATAAATACTAACTTCA-AGTATTAAAGAATACACAGT
* *
236652 TTAGCAGAATTGGCAGCAACCGAATAAATTTAC-TTCAGCCAAAAGACAAAACAAAAGACAAATA
64 TTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGAC-AAAC-AAAGACAAATA
* *
236716 CT-ACTTCACAGTGTTAAAGATAAACAGTTTGTAGTATTGGCAGCAACCGA
127 CTAACTTCACAGTGTTAAAGATAAACAGTTTGCAGAATTGGCAGCAACCGA
236766 ATAATTTACT
Statistics
Matches: 163, Mismatches: 8, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
178 18 0.11
179 23 0.14
180 75 0.46
181 29 0.18
183 7 0.04
184 11 0.07
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.21
Consensus pattern (180 bp):
ATTACTTCAACCAAAAGACAAACAAAGATAAATACTAACTTCAAGTATTAAAGAATACACAGTTT
AGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAACAAAGACAAATACTAA
CTTCACAGTGTTAAAGATAAACAGTTTGCAGAATTGGCAGCAACCGACAA
Done.