Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8415618
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 24 of 40
Found at i:4861594 original size:19 final size:19
Alignment explanation
Indices: 4861570--4861616 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
4861560 GTATTTATAT
4861570 ATCGATGCATAGATAGTAC
1 ATCGATGCATAGATAGTAC
*
4861589 ATCGATGCATAGATAGTGC
1 ATCGATGCATAGATAGTAC
4861608 ATCGATGCA
1 ATCGATGCA
4861617 CCCGTCAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (19 bp):
ATCGATGCATAGATAGTAC
Found at i:4862294 original size:23 final size:23
Alignment explanation
Indices: 4862261--4862320 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
4862251 AACCTTATAT
* *
4862261 GGCACTACGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACAC
* *
4862284 GGCACTTCGGTGCAATTTTACAT
1 GGCACTTCGGTGCAATTCTACAC
*
4862307 GGTACTTCGGTGCA
1 GGCACTTCGGTGCA
4862321 TTTATACGAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.20, C:0.25, G:0.27, T:0.28
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACAC
Found at i:4863096 original size:110 final size:110
Alignment explanation
Indices: 4862903--4863493 Score: 975
Period size: 110 Copynumber: 5.4 Consensus size: 110
4862893 GGGTGTTACA
* ** * * *
4862903 TTCAGTTTCATTCAGAGCCAATTTCAACTTCACATTGAAGGATATTGGACTTGAGACAATACAAA
1 TTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAG
*
4862968 CTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAATAACTT
66 CTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTT
* * * *
4863013 TTCAGTTTCATTCAGAGTAAATTTCAACTTCACAGCGAATGATATTGGACTCGAGACATCACAAG
1 TTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAG
4863078 CTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTT
66 CTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTT
* * * *
4863123 TTCAGTTTCATTCAGAGTCAATTTCAACTTCATAACGAATGATATTAGACTCAAGACAACACAAG
1 TTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAG
* *
4863188 CTCAACTTCATAACGAAGGGGCGACTGACTGTCAACAAACAACTT
66 CTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTT
*
4863233 TTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAG
1 TTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAG
*
4863298 CTCAACTTCACAGCGAAGGGGCGACTGGCTGTCAACAAACAACTT
66 CTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTT
* * *
4863343 TTCAGTTTCATTTAGAGTCAATTTCAACTTCACAACGAAGAATATTAGACTCGAGACAACACAAG
1 TTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAG
4863408 CTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTT
66 CTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTT
*
4863453 TTCAGTTTCATTTAGAGTCAATTTCAACTTCACAACGAAGG
1 TTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGG
4863494 GGCAACTGGA
Statistics
Matches: 449, Mismatches: 32, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
110 449 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (110 bp):
TTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAG
CTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTT
Found at i:4863555 original size:63 final size:64
Alignment explanation
Indices: 4863409--4863556 Score: 194
Period size: 67 Copynumber: 2.3 Consensus size: 64
4863399 CAACACAAGC
* *
4863409 TCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTTAGAGTCAA
1 TCAACTTCACAGCGAAGGGGCAACTGACTGTCAACAAACAACTTTCCAGTTTC---TAGAGTCAA
4863474 TT
63 TT
*
4863476 TCAACTTCACAACGAAGGGGCAACTGGA-TGTCAACAAACAACTTTCCAGTTTC-AGAGTCAATT
1 TCAACTTCACAGCGAAGGGGCAACT-GACTGTCAACAAACAACTTTCCAGTTTCTAGAGTCAATT
*
4863539 TTAACTTCA-AGGCGAAGG
1 TCAACTTCACA-GCGAAGG
4863557 ATATTGGCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
62 1 0.01
63 24 0.32
67 47 0.64
68 2 0.03
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (64 bp):
TCAACTTCACAGCGAAGGGGCAACTGACTGTCAACAAACAACTTTCCAGTTTCTAGAGTCAATT
Found at i:4863845 original size:84 final size:83
Alignment explanation
Indices: 4863690--4864214 Score: 571
Period size: 84 Copynumber: 6.3 Consensus size: 83
4863680 GAGCCAACCG
* * * *
4863690 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
1 AAGACCTTCGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTACAGCATAACTTAAGGCTA
4863755 GAAGGGTTATCTGTCACCAA
65 GAAGGGTTATCTGTCACC-A
* * * * **
4863775 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAATTCTAG
1 AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAGGCTAG
4863840 AAGGGTTATCTG---CCA
66 AAGGGTTATCTGTCACCA
* ** * *
4863855 AAGACCCTCGAGTTCGATTACACTTGGCTTCGAGAGCACATCATTTACAGCATAACTTAAGGCTA
1 AAGACCTTCGAGTTCGATTACACTCAGCTCCAAG-GCACATCATTTACAGCATAACTTAAGGCTA
4863920 GAAGGGTTATCTGTCACCAA
65 GAAGGGTTATCTGTCACC-A
* * * * ** *
4863940 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAATTCGAG
1 AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAGGCTAG
4864005 AAGGGTTATCTG---CCA
66 AAGGGTTATCTGTCACCA
* ** * * *
4864020 AAGACCCTT-GAGTTCGATTACCCTCAGCTTTGAGGGCACATCATTTACAGCATAACTCAATGCT
1 AAGA-CCTTCGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTACAGCATAACTTAAGGCT
* *
4864084 AAAAGGGTTAGCTGTCACCAA
64 AGAAGGGTTATCTGTCACC-A
* * * * * *
4864105 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAGGCTAG
* *
4864170 AAGGGCTATCT-TCCAACCG
66 AAGGGTTATCTGT-C-ACCA
4864189 AAGACCTTCGAGTTCGATTACACTCA
1 AAGACCTTCGAGTTCGATTACACTCA
4864215 ACTCAGAGGC
Statistics
Matches: 364, Mismatches: 62, Indels: 29
0.80 0.14 0.06
Matches are distributed among these distances:
80 50 0.14
81 86 0.24
83 1 0.00
84 149 0.41
85 78 0.21
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (83 bp):
AAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAGGCTAG
AAGGGTTATCTGTCACCA
Found at i:4863962 original size:165 final size:165
Alignment explanation
Indices: 4863690--4864214 Score: 879
Period size: 165 Copynumber: 3.2 Consensus size: 165
4863680 GAGCCAACCG
4863690 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
1 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
4863755 GAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
66 GAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
*
4863820 GCAGCATAGCTTAATTCTAGAAGGGTTATCTGCCA
131 GCAGCATAGCTTAATTCGAGAAGGGTTATCTGCCA
** * *
4863855 AAGACCCTCGAGTTCGATTACACTTGGCTTCGAGAGCACATCATTTACAGCATAACTTAAGGCTA
1 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
4863920 GAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
66 GAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
4863985 GCAGCATAGCTTAATTCGAGAAGGGTTATCTGCCA
131 GCAGCATAGCTTAATTCGAGAAGGGTTATCTGCCA
* * * *
4864020 AAGACCCTTGAGTTCGATTACCCTCAGCTTTGAGGGCACATCATTTACAGCATAACTCAATGCTA
1 AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
* *
4864085 AAAGGGTTAGCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
66 GAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * *
4864150 GCAGCATAGCTTAAGTCGAGAAGGGCTATCTTCCAA
131 GCAGCATAGCTTAATTCGAGAAGGGTTATCTGCC-A
*
4864186 CCGAAGACCTTCGAGTTCGATTACACTCA
1 ---AAGACCCTCGAGTTCGATTACACTCA
4864215 ACTCAGAGGC
Statistics
Matches: 335, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
165 311 0.93
166 1 0.00
169 23 0.07
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (165 bp):
AAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTA
GAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
GCAGCATAGCTTAATTCGAGAAGGGTTATCTGCCA
Found at i:4864945 original size:38 final size:39
Alignment explanation
Indices: 4864841--4864947 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 39
4864831 TATTATATAG
* * *
4864841 TTTGCAAACGATTTTTGAAAA-TACGTAAATAATATATAATT
1 TTTGAAAAC-ATTTTTGAAAATTA--TATATAATATATAAAT
4864882 TTTGAAAACATTTTTGAAAACTTATATATAATATATAAAT
1 TTTGAAAACATTTTTGAAAA-TTATATATAATATATAAAT
4864922 TTT-AAAACATTTTTGAAAATTATATA
1 TTTGAAAACATTTTTGAAAATTATATA
4864948 GTTTAAAAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
38 7 0.11
39 16 0.26
40 28 0.46
41 8 0.13
42 2 0.03
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.42
Consensus pattern (39 bp):
TTTGAAAACATTTTTGAAAATTATATATAATATATAAAT
Found at i:4864997 original size:40 final size:41
Alignment explanation
Indices: 4864942--4865018 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 41
4864932 TTTTGAAAAT
* *
4864942 TATATAGTTTAAAAAAAACAGTTTTGAAATTTTATATATAA
1 TATATAGTTTAAAAAAAACAGTTTTAAAAATTTATATATAA
*
4864983 TATATAGTTT-AAAAAAACATTTTTAAAAATTTATAT
1 TATATAGTTTAAAAAAAACAGTTTTAAAAATTTATAT
4865019 TATATAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 23 0.70
41 10 0.30
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (41 bp):
TATATAGTTTAAAAAAAACAGTTTTAAAAATTTATATATAA
Found at i:4866622 original size:6 final size:6
Alignment explanation
Indices: 4866611--4866637 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
4866601 AAGTCGAGTT
4866611 TTTAAA TTTAAA TTTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT
4866638 TTGCCATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:4870070 original size:152 final size:152
Alignment explanation
Indices: 4869794--4870095 Score: 507
Period size: 152 Copynumber: 2.0 Consensus size: 152
4869784 ACTATAATCT
*
4869794 CTTTTTATTTTGACTATCATTTTTGAATTCTTGTCAATCGATCACTAAGCTATTTAAATGCTTTC
1 CTTTTTATTTTGACTATCATTTTTGAATTCTTGTCAATCGATCACTAAGCTATTTAAATGCATTC
* * * * *
4869859 AATCAAATCACTTCATTAGCCGTTAATATTTAATGGAAGTGCTTACGTGACAGTTAATAAAATTG
66 AATCAAATCACTTCACTAGCCGTTAACATTTAACGAAAGTGCTTACGAGACAGTTAATAAAATTG
4869924 GTATAATTCTCCAAAACTTTTC
131 GTATAATTCTCCAAAACTTTTC
*
4869946 CTTTTTATTTTGACTATCATTTTTGAATTCTTGTCAATCGATCATTCAA-CTATTTAAATGCATT
1 CTTTTTATTTTGACTATCATTTTTGAATTCTTGTCAATCGATCACT-AAGCTATTTAAATGCATT
* *
4870010 CAATCAGATCACTTCACTAGCCGTTAACATTTAACGAAAGTGCTTACGAGATAGTTAATAAAATT
65 CAATCAAATCACTTCACTAGCCGTTAACATTTAACGAAAGTGCTTACGAGACAGTTAATAAAATT
4870075 GGTATAATTCTCCAAAACTTT
130 GGTATAATTCTCCAAAACTTT
4870096 ACAAATATAT
Statistics
Matches: 140, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
152 138 0.99
153 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (152 bp):
CTTTTTATTTTGACTATCATTTTTGAATTCTTGTCAATCGATCACTAAGCTATTTAAATGCATTC
AATCAAATCACTTCACTAGCCGTTAACATTTAACGAAAGTGCTTACGAGACAGTTAATAAAATTG
GTATAATTCTCCAAAACTTTTC
Found at i:4871419 original size:17 final size:17
Alignment explanation
Indices: 4871397--4871432 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
4871387 AGGAACCTTT
4871397 ATACATAATAATTCTAA
1 ATACATAATAATTCTAA
4871414 ATACATAATAATTCTAA
1 ATACATAATAATTCTAA
4871431 AT
1 AT
4871433 TTAGATTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (17 bp):
ATACATAATAATTCTAA
Found at i:4875323 original size:21 final size:21
Alignment explanation
Indices: 4875262--4875324 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
4875252 TCAAAATAAT
4875262 AATAAATTTAATA-TTTTAAA
1 AATAAATTTAATATTTTTAAA
* * * * *
4875282 ATTAAATTCAAGATGTATAAA
1 AATAAATTTAATATTTTTAAA
4875303 AATAAATTTAATATTTTTAAA
1 AATAAATTTAATATTTTTAAA
4875324 A
1 A
4875325 TAATTGTAAA
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
20 10 0.31
21 22 0.69
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (21 bp):
AATAAATTTAATATTTTTAAA
Found at i:4875326 original size:20 final size:20
Alignment explanation
Indices: 4875262--4875327 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
4875252 TCAAAATAAT
4875262 AATAAATTTAATA-TTTTAA
1 AATAAATTTAATATTTTTAA
* * * *
4875281 AATTAAATTCAAGATGTATAAA
1 AA-TAAATTTAATAT-TTTTAA
4875303 AATAAATTTAATATTTTTAA
1 AATAAATTTAATATTTTTAA
4875323 AATAA
1 AATAA
4875328 TTGTAAAAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
19 2 0.06
20 18 0.50
21 10 0.28
22 6 0.17
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (20 bp):
AATAAATTTAATATTTTTAA
Found at i:4878861 original size:3 final size:3
Alignment explanation
Indices: 4878853--4878910 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
4878843 CATAGTGGAT
4878853 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4878901 ATA ATA ATA A
1 ATA ATA ATA A
4878911 GATAGTTCTC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4881304 original size:2 final size:2
Alignment explanation
Indices: 4881297--4881336 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
4881287 CATGAACCTA
4881297 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4881337 TGTTTTGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4882440 original size:4 final size:4
Alignment explanation
Indices: 4882431--4882523 Score: 70
Period size: 4 Copynumber: 24.0 Consensus size: 4
4882421 AAGACACTAT
* *
4882431 ATAA ATAA ATAA ATAA ATAA ATAA AT-- ATAA ATAA ATAA ATCA A-AG
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
* * * * *
4882476 ATAA AGGAA ATAA AAAA ATAA AGAGA A-GA A-AA ATAC ATAA ATAA ATAA
1 ATAA A-TAA ATAA ATAA ATAA ATA-A ATAA ATAA ATAA ATAA ATAA ATAA
4882524 GATGAGGAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 12
0.74 0.14 0.13
Matches are distributed among these distances:
2 2 0.03
3 5 0.07
4 58 0.83
5 5 0.07
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.19
Consensus pattern (4 bp):
ATAA
Found at i:4882635 original size:2 final size:2
Alignment explanation
Indices: 4882623--4882673 Score: 84
Period size: 2 Copynumber: 25.5 Consensus size: 2
4882613 ACATATAAAC
*
4882623 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
4882665 TA TA AA TA T
1 TA TA TA TA T
4882674 TTAAAAAAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4882678 original size:8 final size:8
Alignment explanation
Indices: 4882615--4882678 Score: 65
Period size: 8 Copynumber: 7.9 Consensus size: 8
4882605 CTAATAAAAC
4882615 ATATAAACT
1 ATATAAA-T
*
4882624 ATATACAT
1 ATATAAAT
*
4882632 ATATATAT
1 ATATAAAT
*
4882640 ATATATAT
1 ATATAAAT
*
4882648 ATATATAT
1 ATATAAAT
*
4882656 ATATATAT
1 ATATAAAT
4882664 ATATAAAT
1 ATATAAAT
*
4882672 ATTTAAA
1 ATATAAA
4882679 AAAAGAAAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
8 45 0.88
9 6 0.12
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (8 bp):
ATATAAAT
Found at i:4885098 original size:111 final size:111
Alignment explanation
Indices: 4884914--4885206 Score: 327
Period size: 111 Copynumber: 2.7 Consensus size: 111
4884904 TATCCTCTAT
* * * * * *
4884914 CGTGAAGTTGAAATTGGCTC----TGAAACTG-GGAAATTACTTGTTGACAGTCAGCCGTCCCTT
1 CGTGAAGTTGAAATTGACTCTGAATGAAACTGAAGAAGTTATTTATTGACAGTCAGCCGCCCCTT
* * *
4884974 CGTTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCTAATATCATTCGT
66 CGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATATCATTCGC
* *
4885020 TGTGAAGTTGAAATTGACTCTGAATGAAACTGAAGAAGTTATTTATTGACAGTCATCCGCCCCTT
1 CGTGAAGTTGAAATTGACTCTGAATGAAACTGAAGAAGTTATTTATTGACAGTCAGCCGCCCCTT
* *
4885085 CGCTGTGAAGTTGAGCTTGTGTTGTCTTGAGTCCAATATCCTTCGC
66 CGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATATCATTCGC
* ** ** * *
4885131 CGTGAAGTTGAAATTGGCTCTG-A--AATTTG--GAAACTGTTTGTTGACAGTCAGCCGCCCCTT
1 CGTGAAGTTGAAATTGACTCTGAATGAAACTGAAGAAGTTATTTATTGACAGTCAGCCGCCCCTT
*
4885191 CGTTGTGAAGTTGAGC
66 CGCTGTGAAGTTGAGC
4885207 CCCTAATGGC
Statistics
Matches: 159, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
106 59 0.37
108 4 0.03
110 9 0.06
111 87 0.55
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (111 bp):
CGTGAAGTTGAAATTGACTCTGAATGAAACTGAAGAAGTTATTTATTGACAGTCAGCCGCCCCTT
CGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATATCATTCGC
Found at i:4885277 original size:21 final size:21
Alignment explanation
Indices: 4885253--4885321 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
4885243 ATCGTGGATG
4885253 TGTGGGTACGATATCCTCCGT
1 TGTGGGTACGATATCCTCCGT
* * * *
4885274 TGTGGAGT-TGAAATCGT-GGAT
1 TGTGG-GTACGATATCCTCCG-T
4885295 GTGTGGGTACGATATCCTCCGT
1 -TGTGGGTACGATATCCTCCGT
*
4885317 CGTGG
1 TGTGG
4885322 AGTTGAAATC
Statistics
Matches: 34, Mismatches: 9, Indels: 10
0.64 0.17 0.19
Matches are distributed among these distances:
20 1 0.03
21 18 0.53
22 14 0.41
23 1 0.03
ACGTcount: A:0.16, C:0.17, G:0.35, T:0.32
Consensus pattern (21 bp):
TGTGGGTACGATATCCTCCGT
Found at i:4885279 original size:43 final size:43
Alignment explanation
Indices: 4885217--4885338 Score: 226
Period size: 43 Copynumber: 2.8 Consensus size: 43
4885207 CCCTAATGGC
*
4885217 ACGATATCCTCCGTCGTGGAGTTAAAATCGTGGATGTGTGGGT
1 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATGTGTGGGT
*
4885260 ACGATATCCTCCGTTGTGGAGTTGAAATCGTGGATGTGTGGGT
1 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATGTGTGGGT
4885303 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATG
1 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATG
4885339 ATCCCATCGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 76 1.00
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.30
Consensus pattern (43 bp):
ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATGTGTGGGT
Found at i:4885299 original size:22 final size:22
Alignment explanation
Indices: 4885232--4885300 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
4885222 ATCCTCCGTC
*
4885232 GTGGAGTTAAAATCGTGGATGT
1 GTGGAGTTGAAATCGTGGATGT
* * * *
4885254 GTGG-GTACGATATCCTCCG-T-T
1 GTGGAGT-TGAAATCGT-GGATGT
4885275 GTGGAGTTGAAATCGTGGATGT
1 GTGGAGTTGAAATCGTGGATGT
4885297 GTGG
1 GTGG
4885301 GTACGATATC
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
20 1 0.03
21 14 0.42
22 17 0.52
23 1 0.03
ACGTcount: A:0.20, C:0.10, G:0.38, T:0.32
Consensus pattern (22 bp):
GTGGAGTTGAAATCGTGGATGT
Found at i:4886442 original size:15 final size:16
Alignment explanation
Indices: 4886424--4886454 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4886414 CACCCTAAAC
4886424 GTTTTTT-TCTTTTTT
1 GTTTTTTCTCTTTTTT
4886439 GTTTTTTCTCTTTTTT
1 GTTTTTTCTCTTTTTT
4886455 TCGACTTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (16 bp):
GTTTTTTCTCTTTTTT
Found at i:4897082 original size:2 final size:2
Alignment explanation
Indices: 4897075--4897116 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
4897065 GAAACAAAGA
4897075 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4897117 TAAACATGAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4897208 original size:49 final size:50
Alignment explanation
Indices: 4897155--4897266 Score: 140
Period size: 49 Copynumber: 2.3 Consensus size: 50
4897145 AAAAAAAAAG
* *
4897155 AATATATATATATACGTTAATAGTAATAAAA-AGGAA-TAAATAAATAAAT
1 AATATATATATATACGTAAATAGTAAAAAAATAGGAAGT-AATAAATAAAT
* * * *
4897204 AATATATTTATATACGTAAATAGTAAAAAAATAGTAAGTTATAAATATAT
1 AATATATATATATACGTAAATAGTAAAAAAATAGGAAGTAATAAATAAAT
4897254 -ATATATATATATA
1 AATATATATATATA
4897267 ATGACTTATA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
49 40 0.74
50 13 0.24
51 1 0.02
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (50 bp):
AATATATATATATACGTAAATAGTAAAAAAATAGGAAGTAATAAATAAAT
Found at i:4898440 original size:16 final size:15
Alignment explanation
Indices: 4898412--4898441 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
4898402 AATATGAATG
4898412 ATATATTATTATATA
1 ATATATTATTATATA
4898427 ATATATTCATTATAT
1 ATATATT-ATTATAT
4898442 GACACGGTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATATTATTATATA
Found at i:4899133 original size:30 final size:29
Alignment explanation
Indices: 4899099--4899188 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 29
4899089 CCCAAATTTT
4899099 ATCTAGTGACTAAAATATAATTTTATGAAA
1 ATCTAGTGACTAAAATATAATTTTAT-AAA
** * * *
4899129 ATCTAGTGGTTAAAGTATAAATTTGTAAA
1 ATCTAGTGACTAAAATATAATTTTATAAA
* *
4899158 AGTTTAGGGACTAAAAATATAATTTTA-AAA
1 A-TCTAGTGACT-AAAATATAATTTTATAAA
4899188 A
1 A
4899189 GTTATATATT
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
29 4 0.09
30 31 0.67
31 11 0.24
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (29 bp):
ATCTAGTGACTAAAATATAATTTTATAAA
Found at i:4904787 original size:32 final size:32
Alignment explanation
Indices: 4904746--4904852 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 32
4904736 AGTCGAGGGT
4904746 TTACCTATGTTCTACGGAACATATGGACATAA
1 TTACCTATGTTCTACGGAACATATGGACATAA
* *
4904778 TTACCTATG-TCTTTCTGG-ACATATAGACAGT-A
1 TTACCTATGTTC-TAC-GGAACATATGGACA-TAA
* *
4904810 -TACCTATGTTCTAGGGAACATATGGACA-AT
1 TTACCTATGTTCTACGGAACATATGGACATAA
*
4904840 TTACCTAGGTTCT
1 TTACCTATGTTCT
4904853 TCGGGATCTA
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
30 2 0.03
31 32 0.52
32 24 0.39
33 3 0.05
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (32 bp):
TTACCTATGTTCTACGGAACATATGGACATAA
Found at i:4905571 original size:21 final size:21
Alignment explanation
Indices: 4905541--4905582 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
4905531 GTAGTAGTAT
4905541 TGTAGCAGGGTATCGGTTCCC
1 TGTAGCAGGGTATCGGTTCCC
*
4905562 TGTAGTAGGGTATCGGTTCCC
1 TGTAGCAGGGTATCGGTTCCC
4905583 CTCTGACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.21, G:0.33, T:0.31
Consensus pattern (21 bp):
TGTAGCAGGGTATCGGTTCCC
Found at i:4911481 original size:18 final size:19
Alignment explanation
Indices: 4911445--4911482 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
4911435 TATTCATGAG
4911445 GTATCGATACCTGAAGGGTA
1 GTATCGATACC-GAAGGGTA
4911465 GTATCGATACC-AAGGGTA
1 GTATCGATACCGAAGGGTA
4911483 CCGATACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.24
Consensus pattern (19 bp):
GTATCGATACCGAAGGGTA
Found at i:4911925 original size:2 final size:2
Alignment explanation
Indices: 4911918--4912050 Score: 266
Period size: 2 Copynumber: 66.5 Consensus size: 2
4911908 ATGAACATGC
4911918 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4911960 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4912002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4912044 AT AT AT A
1 AT AT AT A
4912051 GTATGATCAT
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 131 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4912378 original size:22 final size:20
Alignment explanation
Indices: 4912346--4912408 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 20
4912336 AGTCGAGGGT
* *
4912346 TACATATGTCCTTTAGGACATA
1 TACATAGGTCCTTCAGGAC--A
*
4912368 TACATAGGTCCTTCGGGACA
1 TACATAGGTCCTTCAGGACA
*
4912388 TACATGAGGTCCTTCGGGACA
1 TACAT-AGGTCCTTCAGGACA
4912409 GATTTCACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 6 0.16
21 15 0.41
22 16 0.43
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (20 bp):
TACATAGGTCCTTCAGGACA
Found at i:4912392 original size:20 final size:21
Alignment explanation
Indices: 4912367--4912408 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
4912357 TTTAGGACAT
4912367 ATACAT-AGGTCCTTCGGGAC
1 ATACATGAGGTCCTTCGGGAC
4912387 ATACATGAGGTCCTTCGGGAC
1 ATACATGAGGTCCTTCGGGAC
4912408 A
1 A
4912409 GATTTCACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (21 bp):
ATACATGAGGTCCTTCGGGAC
Found at i:4913691 original size:16 final size:16
Alignment explanation
Indices: 4913670--4913703 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
4913660 GTTAGCTTAC
4913670 CCAAGGATAAACATTT
1 CCAAGGATAAACATTT
4913686 CCAAGGATAAACATTT
1 CCAAGGATAAACATTT
4913702 CC
1 CC
4913704 TTGATCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.24
Consensus pattern (16 bp):
CCAAGGATAAACATTT
Found at i:4920743 original size:35 final size:35
Alignment explanation
Indices: 4920651--4920722 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
4920641 CCAAAAAAGA
*
4920651 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTAGATTAGGACTCAAATACTAGTCTAAAAT
4920686 AGAGTTAGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTAGATTAGGACTCAAATACTAGTCTAAAAT
4920721 AG
1 AG
4920723 GATTTTTTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (35 bp):
AGAGTTAGATTAGGACTCAAATACTAGTCTAAAAT
Found at i:4921195 original size:2 final size:2
Alignment explanation
Indices: 4921190--4921222 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4921180 TATATTTTAT
4921190 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4921223 TTCTTTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4921237 original size:59 final size:59
Alignment explanation
Indices: 4921127--4921265 Score: 142
Period size: 59 Copynumber: 2.3 Consensus size: 59
4921117 ATTCATGTTA
* * * *
4921127 TTATTATACGTATATATATATATATTTTAAATTATTTTCATTTGATTTTTTAC-TAT-ATT
1 TTATTATA--TATATATATATATATTATAAATTATTTTCATTTAATATTTTACTTATAAGT
*
4921186 TTATTATATATATATATATATATATATATATATATATTTC-TTTAATATTTTACTTATAAGT
1 TTATTATATATATATATATATAT-TATAAAT-TAT-TTTCATTTAATATTTTACTTATAAGT
*
4921247 CTATTAT-TACTATATATAT
1 TTATTATATA-TATATATAT
4921266 TGTAATTATC
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
57 15 0.22
58 5 0.07
59 22 0.32
60 9 0.13
61 17 0.25
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (59 bp):
TTATTATATATATATATATATATTATAAATTATTTTCATTTAATATTTTACTTATAAGT
Found at i:4921408 original size:2 final size:2
Alignment explanation
Indices: 4921403--4921433 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4921393 CTTATAACTT
4921403 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4921434 TATTTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4921591 original size:41 final size:39
Alignment explanation
Indices: 4921546--4921622 Score: 100
Period size: 41 Copynumber: 1.9 Consensus size: 39
4921536 AGGGCCCATT
* *
4921546 TTTTTATTTTATTTCTAACTAAAGTATCTCCCACTTTCCTC
1 TTTTTATCTTATTTCTAACTAAA--ACCTCCCACTTTCCTC
* *
4921587 TTTTTGTCTTATTTCTGACTAAAACCTCCCACTTTC
1 TTTTTATCTTATTTCTAACTAAAACCTCCCACTTTC
4921623 GGTGAAGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 12 0.38
41 20 0.62
ACGTcount: A:0.21, C:0.26, G:0.04, T:0.49
Consensus pattern (39 bp):
TTTTTATCTTATTTCTAACTAAAACCTCCCACTTTCCTC
Found at i:4921832 original size:14 final size:15
Alignment explanation
Indices: 4921798--4921830 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
4921788 TATTTATTTA
*
4921798 TTTTATTTTTTTCTC
1 TTTTATTTTATTCTC
4921813 TTTTATTTTATTCTC
1 TTTTATTTTATTCTC
4921828 TTT
1 TTT
4921831 ATCTTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTATTTTATTCTC
Found at i:4933526 original size:106 final size:106
Alignment explanation
Indices: 4933290--4933863 Score: 771
Period size: 106 Copynumber: 5.5 Consensus size: 106
4933280 ATATCACACC
* * *
4933290 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACTACTTT-T
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAAC-AATTTCC
* * *
4933354 TAGTTTCATTCAGAGCCAATTTCAACTTCATAGCGAAGGATATTGG
65 CA--AT--TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
4933400 ACTCGGGATAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* *
4933465 AATTTCAGAGCCAATTTCAACTTCACATCGAAGGATGTTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
4933506 ACTCGGGACAATACAAGTTCATCTTCATAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* *
4933571 AATTTCAGAGTCAATTTCAACTTCACAGCAAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
4933612 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATCTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
4933677 AATTTCAGAG------TCAA--T---AGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
4933707 ACTTGAGACGACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* * * *
4933772 AATTTTAGGGTCAATTTCAACTTCACATCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
4933813 ACTCGAGAC--CACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC
4933864 TTCACAACGA
Statistics
Matches: 417, Mismatches: 35, Indels: 30
0.87 0.07 0.06
Matches are distributed among these distances:
95 83 0.20
98 1 0.00
100 4 0.01
101 4 0.01
103 1 0.00
104 42 0.10
106 223 0.53
108 1 0.00
109 4 0.01
110 54 0.13
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (106 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:4933746 original size:201 final size:204
Alignment explanation
Indices: 4933290--4933863 Score: 764
Period size: 201 Copynumber: 2.8 Consensus size: 204
4933280 ATATCACACC
* * *
4933290 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACTACTTT-T
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAAC-AATTTCC
* * * * * *
4933354 TAGTTTCATTCAGAGCCAATTTCAACTTCATAGCGAAGGATATTGGACTCGGGATAACACAAGTT
65 CA--AT--TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTT
* *
4933419 CAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCA
126 CAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAG---A--TCA
* *
4933484 ACTTCACATCGAAGGATGTTGG
186 AC-T--CAGCGAAGGATATTGG
* * * * *
4933506 ACTCGGGACAATACAAGTTCATCTTCATAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* *
4933571 AATTTCAGAGTCAATTTCAACTTCACAGCAAAGGATATTGGACTCAAGACAACACAAGTTCAACT
66 AATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACT
4933636 TCACAACGAAGGGACGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAG-TCAA-T-AGCGAA
131 TCACAACGAAGGGACGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAGATCAACTCAGCGAA
4933698 GGATATTGG
196 GGATATTGG
* *
4933707 ACTTGAGACGACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
* * *
4933772 AATTTTAGGGTCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGAC--CACAAGTTCAACT
66 AATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACT
4933835 TCACAACGAAGGGACGGCTGGTTGTCAAC
131 TCACAACGAAGGGACGGCTGGTTGTCAAC
4933864 TTCACAACGA
Statistics
Matches: 325, Mismatches: 32, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
199 42 0.13
201 116 0.36
204 1 0.00
206 4 0.01
212 105 0.32
214 1 0.00
215 4 0.01
216 52 0.16
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (204 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
AATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACT
TCACAACGAAGGGACGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAGATCAACTCAGCGAA
GGATATTGG
Found at i:4933865 original size:30 final size:30
Alignment explanation
Indices: 4933829--4933893 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
4933819 GACCACAAGT
*
4933829 TCAACTTCACAACGAAGGGACGGCTGGTTG
1 TCAACTTCACAACGAAGGGACGACTGGTTG
4933859 TCAACTTCACAACGAAGGGACGACTGGTTG
1 TCAACTTCACAACGAAGGGACGACTGGTTG
4933889 TCAAC
1 TCAAC
4933894 AAACAATTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.20
Consensus pattern (30 bp):
TCAACTTCACAACGAAGGGACGACTGGTTG
Found at i:4934047 original size:106 final size:106
Alignment explanation
Indices: 4933859--4934056 Score: 247
Period size: 106 Copynumber: 1.9 Consensus size: 106
4933849 CGGCTGGTTG
* * * *
4933859 TCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCCAATTTCAAGGTCAATTTT
1 TCAACTTCACAACGAAGGGACGACTGGCTGTCAACAAACAATTTCCCAATTCCAAGCTCAATTTC
*
4933924 AACTTCACATCGAAGGATATTAGACTCAAGACAGCACAAGT
66 AACTTCACAGCGAAGGATATTAGACTCAAGACAGCACAAGT
* * * * *
4933965 TCAACTTCACAGCGAAGGGGC-AGTTGGCTGTCAACAAACAATTTTCCAGTTCCATAGCT-AATT
1 TCAACTTCACAACGAAGGGACGA-CTGGCTGTCAACAAACAATTTCCCAATTCCA-AGCTCAATT
* * *
4934028 TCAACTTCACGGCGGAGGATATTGGACTC
64 TCAACTTCACAGCGAAGGATATTAGACTC
4934057 GGAACAATAC
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
105 1 0.01
106 73 0.95
107 3 0.04
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (106 bp):
TCAACTTCACAACGAAGGGACGACTGGCTGTCAACAAACAATTTCCCAATTCCAAGCTCAATTTC
AACTTCACAGCGAAGGATATTAGACTCAAGACAGCACAAGT
Found at i:4934049 original size:240 final size:229
Alignment explanation
Indices: 4933630--4934057 Score: 531
Period size: 240 Copynumber: 1.8 Consensus size: 229
4933620 CAACACAAGT
*
4933630 TCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAGTCAATAGC
1 TCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATCTCCCAATTTCAGAGTCAATAGC
* ** * *
4933695 GAAGGATATTGGACTTGAGACGACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC
66 GAAGGATATTAGACTCAAGACGACACAAGTTCAACTTCACAACGAAGGGACAGCTGGCTGTCAAC
* * *
4933760 AAACAATTTCCCAATTTTAGGGTCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGACCAC
131 AAACAATTTCCCAATTATAGGCTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACCAC
4933825 AAGTTCAACTTCACAACGAAGGGACGGCTGGTTG
196 AAGTTCAACTTCACAACGAAGGGACGGCTGGTTG
*
4933859 TCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATTTCCCAATTTCA-AGGTCAATTT
1 TCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATCTCCCAATTTCAGA-GTC-----
* * *
4933923 TAACTTCACATCGAAGGATATTAGACTCAAGAC-AGCACAAGTTCAACTTCACAGCGAAGGGGCA
60 -AA--T---AGCGAAGGATATTAGACTCAAGACGA-CACAAGTTCAACTTCACAACGAAGGGACA
* * * * *
4933987 GTTGGCTGTCAACAAACAATTTTCCAGTTCCATA-GCT-AATTTCAACTTCACGGCGGAGGATAT
118 GCTGGCTGTCAACAAACAATTTCCCAATT--ATAGGCTCAATTTCAACTTCACAGCGAAGGATAT
4934050 TGGACTCG
181 TGGACTCG
4934058 GAACAATACA
Statistics
Matches: 166, Mismatches: 18, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
228 1 0.01
229 55 0.33
235 2 0.01
237 1 0.01
239 1 0.01
240 102 0.61
241 2 0.01
242 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (229 bp):
TCAACTTCACAACGAAGGGACGACTGGTTGTCAACAAACAATCTCCCAATTTCAGAGTCAATAGC
GAAGGATATTAGACTCAAGACGACACAAGTTCAACTTCACAACGAAGGGACAGCTGGCTGTCAAC
AAACAATTTCCCAATTATAGGCTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACCAC
AAGTTCAACTTCACAACGAAGGGACGGCTGGTTG
Found at i:4934973 original size:17 final size:18
Alignment explanation
Indices: 4934947--4934986 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
4934937 ATTATATGGA
4934947 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
4934963 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
4934981 TATTAT
1 TATTAT
4934987 ATGTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:4934997 original size:2 final size:2
Alignment explanation
Indices: 4934984--4935016 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
4934974 ATGTTATTAT
*
4934984 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4935017 TAAATTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4935056 original size:2 final size:2
Alignment explanation
Indices: 4935051--4935093 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
4935041 TACTATATTT
4935051 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4935093 T
1 T
4935094 TTCTTTAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4935211 original size:17 final size:17
Alignment explanation
Indices: 4935189--4935223 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
4935179 ATAGTTTATT
*
4935189 TATATACCTATTATTAA
1 TATATACATATTATTAA
*
4935206 TATATACATATTCTTAA
1 TATATACATATTATTAA
4935223 T
1 T
4935224 TATTTTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (17 bp):
TATATACATATTATTAA
Found at i:4935459 original size:41 final size:39
Alignment explanation
Indices: 4935414--4935490 Score: 100
Period size: 41 Copynumber: 1.9 Consensus size: 39
4935404 AGGCCCCATT
* *
4935414 TTTTTATTTTATTTCTAACTAAAGTCTCTCCCACTTTCCTC
1 TTTTTATCTTATTTCTAACTAAAG-C-CCCCCACTTTCCTC
* *
4935455 TTTTTGTCTTATTTCTGACTAAAGCCCCCCACTTTC
1 TTTTTATCTTATTTCTAACTAAAGCCCCCCACTTTC
4935491 GGTGAAGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 10 0.31
40 1 0.03
41 21 0.66
ACGTcount: A:0.18, C:0.29, G:0.05, T:0.48
Consensus pattern (39 bp):
TTTTTATCTTATTTCTAACTAAAGCCCCCCACTTTCCTC
Found at i:4935553 original size:42 final size:44
Alignment explanation
Indices: 4935506--4935593 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 44
4935496 AGTGAGAATG
*
4935506 TAGCTT-TTCTATTTT-TAAATA-TTTGTTGTATATATATATATA
1 TAGCTTATT-TATTTTATAAATACTTTGATGTATATATATATATA
* *
4935548 TAGCTTATTTATTTTATTAATACTTTGATGTATATATATATGTA
1 TAGCTTATTTATTTTATAAATACTTTGATGTATATATATATATA
4935592 TA
1 TA
4935594 TATTTTTTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
42 12 0.30
43 7 0.17
44 21 0.52
ACGTcount: A:0.32, C:0.05, G:0.08, T:0.56
Consensus pattern (44 bp):
TAGCTTATTTATTTTATAAATACTTTGATGTATATATATATATA
Found at i:4936493 original size:18 final size:19
Alignment explanation
Indices: 4936465--4936501 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
4936455 TTTATTTCAA
4936465 ACAATAATGTTGATCAGTG
1 ACAATAATGTTGATCAGTG
4936484 ACAA-AATGTTGATCAGTG
1 ACAATAATGTTGATCAGTG
4936502 GGCATATCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.30
Consensus pattern (19 bp):
ACAATAATGTTGATCAGTG
Found at i:4936692 original size:19 final size:20
Alignment explanation
Indices: 4936653--4936693 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
4936643 CGGTTATACT
* *
4936653 ATCCGGTTTTAAAATATCCG
1 ATCCGGTTTTAAAAAAACCG
4936673 ATCCGG-TTTAAAAAAACCG
1 ATCCGGTTTTAAAAAAACCG
4936692 AT
1 AT
4936694 TTTTCCTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (20 bp):
ATCCGGTTTTAAAAAAACCG
Found at i:4937695 original size:21 final size:21
Alignment explanation
Indices: 4937654--4937695 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
4937644 TTATGTTTAA
* *
4937654 TAAATTATTTAATAAATACAT
1 TAAATTATTAAATAAAAACAT
4937675 TAAATT-TTAAATAGAAAACAT
1 TAAATTATTAAATA-AAAACAT
4937696 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (21 bp):
TAAATTATTAAATAAAAACAT
Found at i:4938245 original size:58 final size:58
Alignment explanation
Indices: 4938177--4938297 Score: 206
Period size: 58 Copynumber: 2.1 Consensus size: 58
4938167 TGTTACACAC
* *
4938177 ATATATAACTTTTTAACTACTTTAAAATATTGTATTAAATTTGTAATTGTGATCATAT
1 ATATAAAACTTTTTAACGACTTTAAAATATTGTATTAAATTTGTAATTGTGATCATAT
* *
4938235 ATATAAAACTTTTTAACGACTTTATAATATTGTATTAAATTTGTAATTGTGATTATAT
1 ATATAAAACTTTTTAACGACTTTAAAATATTGTATTAAATTTGTAATTGTGATCATAT
4938293 ATATA
1 ATATA
4938298 TATTAAAATA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (58 bp):
ATATAAAACTTTTTAACGACTTTAAAATATTGTATTAAATTTGTAATTGTGATCATAT
Found at i:4938355 original size:22 final size:22
Alignment explanation
Indices: 4938325--4938399 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
4938315 AAATAGTGAG
*
4938325 AATAGTATAATTTTATAAATTT
1 AATATTATAATTTTATAAATTT
4938347 AATATTAT-ATTCTTA-ATAATTT
1 AATATTATAATT-TTATA-AATTT
*
4938369 AACATATTAAAATTTTATTAAATTT
1 -A-ATATTATAATTTTA-TAAATTT
*
4938394 TATATT
1 AATATT
4938400 TGTTATCATT
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
21 4 0.09
22 15 0.35
23 6 0.14
24 9 0.21
25 8 0.19
26 1 0.02
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (22 bp):
AATATTATAATTTTATAAATTT
Found at i:4944266 original size:13 final size:13
Alignment explanation
Indices: 4944248--4944288 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
4944238 AATAAAAATA
4944248 ATTAAATACAAAC
1 ATTAAATACAAAC
4944261 ATTAAATACAAAC
1 ATTAAATACAAAC
* *
4944274 GTTATAATTCAAAC
1 ATTA-AATACAAAC
4944288 A
1 A
4944289 ACTAAATACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 16 0.67
14 8 0.33
ACGTcount: A:0.56, C:0.15, G:0.02, T:0.27
Consensus pattern (13 bp):
ATTAAATACAAAC
Found at i:4944353 original size:47 final size:45
Alignment explanation
Indices: 4944298--4944424 Score: 127
Period size: 47 Copynumber: 2.8 Consensus size: 45
4944288 AACTAAATAC
*
4944298 TAAAAACATTAACAAAATAAATAAATAAATAAAAGTCCATAATTTAA
1 TAAAAACATTAA-AAAATAAATAAATAAA-AAAAGTCCATAATTAAA
* * *
4944345 TAAAAACATTAAGAAACA-AAACAAAT--AAAAATTCTATAATTAAA
1 TAAAAACATTAA-AAA-ATAAATAAATAAAAAAAGTCCATAATTAAA
*
4944389 T-AAAACATTAAGAAATAAAATAAATAAAAACAAGTC
1 TAAAAACATTAAAAAAT-AAATAAATAAAAA-AAGTC
4944425 TATCAAAGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
41 1 0.02
42 2 0.03
43 17 0.26
44 15 0.23
45 4 0.06
46 4 0.06
47 22 0.33
48 1 0.02
ACGTcount: A:0.65, C:0.09, G:0.03, T:0.23
Consensus pattern (45 bp):
TAAAAACATTAAAAAATAAATAAATAAAAAAAGTCCATAATTAAA
Found at i:4944394 original size:43 final size:44
Alignment explanation
Indices: 4944336--4944418 Score: 132
Period size: 43 Copynumber: 1.9 Consensus size: 44
4944326 ATAAAAGTCC
*
4944336 ATAATTTAATAAAAACATTAAGAAACAAAACAAATAAAAATTCT
1 ATAATTAAATAAAAACATTAAGAAACAAAACAAATAAAAATTCT
* *
4944380 ATAATTAAAT-AAAACATTAAGAAATAAAATAAATAAAAA
1 ATAATTAAATAAAAACATTAAGAAACAAAACAAATAAAAA
4944419 CAAGTCTATC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 27 0.75
44 9 0.25
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.24
Consensus pattern (44 bp):
ATAATTAAATAAAAACATTAAGAAACAAAACAAATAAAAATTCT
Found at i:4944523 original size:6 final size:6
Alignment explanation
Indices: 4944512--4945256 Score: 1310
Period size: 6 Copynumber: 124.2 Consensus size: 6
4944502 CTCTTCCTCC
4944512 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4944560 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4944608 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4944656 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
* * * * * *
4944704 TTGTCA TTGTCA TTGTCA TTGTCA TTGTCA TTGTCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
* * *
4944752 TTATCA TTATCA TTATCA TTGTCA TTATCA TTGTCA TTGTCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
* * *
4944800 TTATCA TTGTCA TTATCA TTATCA TTGTCA TTATCA TTATCA TTGTCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
* * *
4944848 TTGTCA TTATCA TTATCA TTATCA TTATCA TTGTCA TTGTCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
* * * * *
4944896 TTATCA TTGTCA TTGTCA TTATCA TTATCA TTGTCA TTGTCA TTGTCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4944944 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4944992 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4945040 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4945088 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4945136 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4945184 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
1 TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA TTATCA
4945232 TTATCA TTATCA TTATCA TTATCA T
1 TTATCA TTATCA TTATCA TTATCA T
4945257 CAACAACAGT
Statistics
Matches: 721, Mismatches: 18, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 721 1.00
ACGTcount: A:0.31, C:0.17, G:0.03, T:0.50
Consensus pattern (6 bp):
TTATCA
Found at i:4949557 original size:20 final size:20
Alignment explanation
Indices: 4949515--4949554 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
4949505 GTAAAATTGG
*
4949515 ATTTTGAAAAACAAAATGAA
1 ATTTTGAAAAACAAAATAAA
*
4949535 ATTTTGAAAAA-GAAATAAA
1 ATTTTGAAAAACAAAATAAA
4949554 A
1 A
4949555 ATTGAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (20 bp):
ATTTTGAAAAACAAAATAAA
Found at i:4949758 original size:18 final size:18
Alignment explanation
Indices: 4949735--4949773 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
4949725 AAAATTAGAC
4949735 GAATATGGGTTCCAAAGG
1 GAATATGGGTTCCAAAGG
4949753 GAATATGGGTTCCAAAGG
1 GAATATGGGTTCCAAAGG
4949771 GAA
1 GAA
4949774 CAAGGGGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.36, C:0.10, G:0.33, T:0.21
Consensus pattern (18 bp):
GAATATGGGTTCCAAAGG
Found at i:4954961 original size:20 final size:20
Alignment explanation
Indices: 4954933--4954971 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4954923 AATTAATTTT
*
4954933 ATTTTTGTTCGTTTACGTTC
1 ATTTGTGTTCGTTTACGTTC
*
4954953 ATTTGTGTTTGTTTACGTT
1 ATTTGTGTTCGTTTACGTT
4954972 TGTTCATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.10, G:0.18, T:0.62
Consensus pattern (20 bp):
ATTTGTGTTCGTTTACGTTC
Found at i:4959737 original size:12 final size:11
Alignment explanation
Indices: 4959695--4959728 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
4959685 GAATTATTAG
*
4959695 AAATAAAAAAAT
1 AAAT-AAAACAT
4959707 AAATAAAACAT
1 AAATAAAACAT
4959718 AAATAAAACAT
1 AAATAAAACAT
4959729 TAAAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (11 bp):
AAATAAAACAT
Found at i:4960337 original size:31 final size:31
Alignment explanation
Indices: 4960301--4960364 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
4960291 GTAATACAGT
4960301 CCCCAACATTTAGTCCGTTTACAAAATGGTC
1 CCCCAACATTTAGTCCGTTTACAAAATGGTC
* * *
4960332 CCCCAACATTTAGTCTGTTTGCAATATGGTC
1 CCCCAACATTTAGTCCGTTTACAAAATGGTC
4960363 CC
1 CC
4960365 TGACCGTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (31 bp):
CCCCAACATTTAGTCCGTTTACAAAATGGTC
Found at i:4962297 original size:31 final size:31
Alignment explanation
Indices: 4962262--4962329 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
4962252 TCAAATGGTC
4962262 GGGGACCATATTGCAAACAGACTAAATGTTG
1 GGGGACCATATTGCAAACAGACTAAATGTTG
* * *
4962293 GGGGATCATATTGCAAACGGATTAAATGTTG
1 GGGGACCATATTGCAAACAGACTAAATGTTG
4962324 GGGGAC
1 GGGGAC
4962330 TGTATTGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.24
Consensus pattern (31 bp):
GGGGACCATATTGCAAACAGACTAAATGTTG
Found at i:4966895 original size:23 final size:23
Alignment explanation
Indices: 4966865--4966916 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
4966855 TGTCATTTCA
4966865 TAAAAGGGGGAAAATCCAGAAAG
1 TAAAAGGGGGAAAATCCAGAAAG
4966888 TAAAAGGGGGAAAATCCAGAAAG
1 TAAAAGGGGGAAAATCCAGAAAG
4966911 TAAAAG
1 TAAAAG
4966917 CTCAAGAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.54, C:0.08, G:0.29, T:0.10
Consensus pattern (23 bp):
TAAAAGGGGGAAAATCCAGAAAG
Found at i:4968338 original size:30 final size:31
Alignment explanation
Indices: 4968285--4968343 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
4968275 GTTTCTTTGG
4968285 ATCAATTAAAATATTAATTGAGTTATTAAAAT
1 ATCAATTAAAATA-TAATTGAGTTATTAAAAT
4968317 ATCAA-TAAAATA-AATTTGAGTTATTAA
1 ATCAATTAAAATATAA-TTGAGTTATTAA
4968344 TAGATGTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 2 0.08
30 12 0.46
31 7 0.27
32 5 0.19
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (31 bp):
ATCAATTAAAATATAATTGAGTTATTAAAAT
Found at i:4974843 original size:21 final size:21
Alignment explanation
Indices: 4974814--4974869 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
4974804 ATTTACTGCG
*
4974814 ATTGCGGCCATAGCGAGCGCT
1 ATTGTGGCCATAGCGAGCGCT
4974835 ATTGTGGCCATAGCGAGCGCT
1 ATTGTGGCCATAGCGAGCGCT
*
4974856 ATTATGGCCATAGC
1 ATTGTGGCCATAGC
4974870 TGATATATCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (21 bp):
ATTGTGGCCATAGCGAGCGCT
Found at i:4975196 original size:36 final size:36
Alignment explanation
Indices: 4975140--4975234 Score: 154
Period size: 36 Copynumber: 2.6 Consensus size: 36
4975130 ATACTTCAAT
* *
4975140 GAATAACAACTATTCATTTACCACCGAAGTCGCTTG
1 GAATAACAACAATTCATTTACCACCGAAATCGCTTG
*
4975176 GAATAACAACAATTCTTTTACCACCGAAATCGCTTG
1 GAATAACAACAATTCATTTACCACCGAAATCGCTTG
*
4975212 AAATAACAACAATTCATTTACCA
1 GAATAACAACAATTCATTTACCA
4975235 GCGACGTTAC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.27
Consensus pattern (36 bp):
GAATAACAACAATTCATTTACCACCGAAATCGCTTG
Found at i:4982974 original size:14 final size:14
Alignment explanation
Indices: 4982955--4982987 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
4982945 CGCTGGGCAT
4982955 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
4982969 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
4982983 ACGAG
1 CCGAG
4982988 CTATGCGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.39, G:0.30, T:0.06
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:4983021 original size:33 final size:33
Alignment explanation
Indices: 4982969--4983053 Score: 125
Period size: 33 Copynumber: 2.6 Consensus size: 33
4982959 GGCCATCCGA
* * * *
4982969 CCGAGGCCATCCGAACGAGCTATGCGAGGGCAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAGGGAAT
4983002 CCGAGGGCAACCGAGCGAGCTATGCGAGGGAAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAGGGAAT
*
4983035 CCGAGGGCAACCGTGCGAG
1 CCGAGGGCAACCGAGCGAG
4983054 GGAAACCGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.25, C:0.28, G:0.38, T:0.09
Consensus pattern (33 bp):
CCGAGGGCAACCGAGCGAGCTATGCGAGGGAAT
Found at i:4983127 original size:10 final size:10
Alignment explanation
Indices: 4983106--4983246 Score: 75
Period size: 10 Copynumber: 13.1 Consensus size: 10
4983096 CCTACCCTCG
*
4983106 CTCGGTTGCC
1 CTCGGATGCC
*
4983116 CTCGGATTCC
1 CTCGGATGCC
*
4983126 CTCGCATAGCTC
1 CTCGGAT-GC-C
4983138 GCTCGGATGCC
1 -CTCGGATGCC
4983149 CTCGGATGCC
1 CTCGGATGCC
**
4983159 CTCACATAGCTC
1 CTCGGAT-GC-C
* *
4983171 GTTCGGATGGC
1 -CTCGGATGCC
*
4983182 CTCGGATGCT
1 CTCGGATGCC
*
4983192 CTCGGATGGC
1 CTCGGATGCC
* *
4983202 ATCGGATGCT
1 CTCGGATGCC
*
4983212 TTCGGATGGCC
1 CTCGGAT-GCC
*
4983223 TCGGTCGGATGGC
1 -C--TCGGATGCC
4983236 CTCGGATGCC
1 CTCGGATGCC
4983246 C
1 C
4983247 AGCGTGTTGG
Statistics
Matches: 97, Mismatches: 24, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
10 66 0.68
11 7 0.07
12 6 0.06
13 12 0.12
14 6 0.06
ACGTcount: A:0.11, C:0.33, G:0.30, T:0.25
Consensus pattern (10 bp):
CTCGGATGCC
Found at i:4983143 original size:33 final size:33
Alignment explanation
Indices: 4983102--4983190 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
4983092 GCGACCTACC
* * *
4983102 CTCGCTCGGTTGCCCTCGGATTCCCTCGCATAG
1 CTCGCTCGGATGCCCTCGGATGCCCTCACATAG
4983135 CTCGCTCGGATGCCCTCGGATGCCCTCACATAG
1 CTCGCTCGGATGCCCTCGGATGCCCTCACATAG
* *
4983168 CTCGTTCGGATGGCCTCGGATGC
1 CTCGCTCGGATGCCCTCGGATGC
4983191 TCTCGGATGG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.11, C:0.37, G:0.27, T:0.25
Consensus pattern (33 bp):
CTCGCTCGGATGCCCTCGGATGCCCTCACATAG
Found at i:4983198 original size:20 final size:20
Alignment explanation
Indices: 4983139--4983226 Score: 95
Period size: 20 Copynumber: 4.2 Consensus size: 20
4983129 GCATAGCTCG
* *
4983139 CTCGGATGCCCTCGGATGCC
1 CTCGGATGCTCTCGGATGGC
**
4983159 CTCACATAGCTCGTTCGGATGGC
1 CTCGGAT-GCTC--TCGGATGGC
4983182 CTCGGATGCTCTCGGATGGC
1 CTCGGATGCTCTCGGATGGC
* *
4983202 ATCGGATGCTTTCGGATGGC
1 CTCGGATGCTCTCGGATGGC
4983222 CTCGG
1 CTCGG
4983227 TCGGATGGCC
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
20 36 0.64
21 3 0.05
22 4 0.07
23 13 0.23
ACGTcount: A:0.12, C:0.31, G:0.32, T:0.25
Consensus pattern (20 bp):
CTCGGATGCTCTCGGATGGC
Found at i:4983232 original size:14 final size:14
Alignment explanation
Indices: 4983213--4983240 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4983203 TCGGATGCTT
4983213 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
4983227 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
4983241 ATGCCCAGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.43, T:0.21
Consensus pattern (14 bp):
TCGGATGGCCTCGG
Found at i:4983581 original size:29 final size:29
Alignment explanation
Indices: 4983539--4983605 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
4983529 AACACCCCAC
*
4983539 AGGTCGCTCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
*
4983568 AGGTCGCCCGGATGCCATGGCGACCTCCG
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
4983597 AGGTCGCCC
1 AGGTCGCCC
4983606 AAGCTCACTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (29 bp):
AGGTCGCCCGGATGCCATGGCGACCTCCA
Found at i:4994224 original size:17 final size:17
Alignment explanation
Indices: 4994202--4994240 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
4994192 TAAAAACTAT
*
4994202 TTAAAATTTACAAAATA
1 TTAAAAATTACAAAATA
*
4994219 TTAAAAATTATAAAATA
1 TTAAAAATTACAAAATA
4994236 -TAAAA
1 TTAAAA
4994241 GGGTAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
TTAAAAATTACAAAATA
Found at i:4995270 original size:7 final size:7
Alignment explanation
Indices: 4995260--4995285 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
4995250 TTCCTTTTCT
4995260 TTTCCCC
1 TTTCCCC
4995267 TTTCCCC
1 TTTCCCC
4995274 TTTCCCC
1 TTTCCCC
4995281 TTTCC
1 TTTCC
4995286 AATTGTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (7 bp):
TTTCCCC
Found at i:4998094 original size:2 final size:2
Alignment explanation
Indices: 4998087--4998111 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4998077 TGTAAATTGT
4998087 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4998112 TCGCCGGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5001410 original size:2 final size:2
Alignment explanation
Indices: 5001355--5001391 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
5001345 TAGTAATTAA
5001355 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5001392 GTAGAAGTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:5001937 original size:26 final size:25
Alignment explanation
Indices: 5001915--5001965 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 25
5001905 CAAATAATTA
5001915 AAATTAATCAAATTAAAATATAATAACC
1 AAATTAAT-AAATT-AAATATAATAA-C
*
5001943 AAATTAATAAATTATATATAATA
1 AAATTAATAAATTAAATATAATA
5001966 CATACACTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 9 0.41
27 5 0.23
28 8 0.36
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (25 bp):
AAATTAATAAATTAAATATAATAAC
Found at i:5008851 original size:24 final size:24
Alignment explanation
Indices: 5008819--5008876 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
5008809 TAGTAGATGG
* *
5008819 TTTTGTTTATATTTATACCATGT-
1 TTTTTTTTATATTTATAACATGTA
*
5008842 TTTTTATTTATTTTTATAACATGTA
1 TTTTT-TTTATATTTATAACATGTA
5008867 TTTTTTTTAT
1 TTTTTTTTAT
5008877 CAGGGTTATC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.13
24 21 0.70
25 5 0.17
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.67
Consensus pattern (24 bp):
TTTTTTTTATATTTATAACATGTA
Found at i:5009132 original size:14 final size:14
Alignment explanation
Indices: 5009094--5009136 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
5009084 CGTTCGATAA
**
5009094 TATGTTCGTTCATT
1 TATGTTCGTTTGTT
5009108 TATGTTCGTTTGTT
1 TATGTTCGTTTGTT
5009122 TATGTTCGTTTGTT
1 TATGTTCGTTTGTT
5009136 T
1 T
5009137 GCGTTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.09, C:0.09, G:0.19, T:0.63
Consensus pattern (14 bp):
TATGTTCGTTTGTT
Found at i:5009336 original size:10 final size:10
Alignment explanation
Indices: 5009314--5009352 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
5009304 AAAATATATT
5009314 TTCATTTATG
1 TTCATTTATG
* *
5009324 TTCGTTTACG
1 TTCATTTATG
5009334 TTCATTTATG
1 TTCATTTATG
5009344 TTCATTTAT
1 TTCATTTAT
5009353 TGTGTACGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.18, C:0.13, G:0.10, T:0.59
Consensus pattern (10 bp):
TTCATTTATG
Found at i:5009339 original size:20 final size:20
Alignment explanation
Indices: 5009314--5009351 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
5009304 AAAATATATT
*
5009314 TTCATTTATGTTCGTTTACG
1 TTCATTTATGTTCATTTACG
5009334 TTCATTTATGTTCATTTA
1 TTCATTTATGTTCATTTA
5009352 TTGTGTACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (20 bp):
TTCATTTATGTTCATTTACG
Found at i:5009440 original size:57 final size:57
Alignment explanation
Indices: 5009314--5009440 Score: 138
Period size: 57 Copynumber: 2.2 Consensus size: 57
5009304 AAAATATATT
*
5009314 TTCATTTATGTTCGTTTACGTTCATTTATGTTCATTTATTGTGTACGTTTACGATCG
1 TTCATTTATGTTCATTTACGTTCATTTATGTTCATTTATTGTGTACGTTTACGATCG
* * *
5009371 TT-TTGTTGTGTTCATTTACGTTCGTTTATTGTCTTCATTTA-TGT-T-CGTTTAC-ATCCG
1 TTCAT-TTATGTTCATTTACGTTCATTTA-TG--TTCATTTATTGTGTACGTTTACGAT-CG
5009428 TTCATTTATGTTC
1 TTCATTTATGTTC
5009441 GTTCATTTGT
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
56 3 0.05
57 40 0.69
58 4 0.07
59 3 0.05
60 8 0.14
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.55
Consensus pattern (57 bp):
TTCATTTATGTTCATTTACGTTCATTTATGTTCATTTATTGTGTACGTTTACGATCG
Found at i:5009443 original size:14 final size:14
Alignment explanation
Indices: 5009426--5009457 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
5009416 CGTTTACATC
5009426 CGTTCATTTATGTT
1 CGTTCATTTATGTT
*
5009440 CGTTCATTTGTGTT
1 CGTTCATTTATGTT
5009454 CGTT
1 CGTT
5009458 TATCATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.16, G:0.19, T:0.56
Consensus pattern (14 bp):
CGTTCATTTATGTT
Found at i:5009454 original size:24 final size:23
Alignment explanation
Indices: 5009314--5009460 Score: 120
Period size: 24 Copynumber: 6.4 Consensus size: 23
5009304 AAAATATATT
*
5009314 TTCATTTATGTTCGTTTA---CG
1 TTCATTTATGTTCGTTTATTGTG
*
5009334 TTCATTTATGTTCATTTATTGTG
1 TTCATTTATGTTCGTTTATTGTG
* * * * *
5009357 TACGTTTACGATCGTTTTGTTGTG
1 TTCATTTATGTTCG-TTTATTGTG
* *
5009381 TTCATTTACGTTCGTTTATTGTC
1 TTCATTTATGTTCGTTTATTGTG
* **
5009404 TTCATTTATGTTCGTTTACATCCG
1 TTCATTTATGTTCGTTTA-TTGTG
*
5009428 TTCATTTATGTTCGTTCATTTGTG
1 TTCATTTATGTTCGTTTA-TTGTG
*
5009452 TTCGTTTAT
1 TTCATTTAT
5009461 CATTTAAATG
Statistics
Matches: 98, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
20 17 0.17
23 34 0.35
24 47 0.48
ACGTcount: A:0.14, C:0.14, G:0.16, T:0.56
Consensus pattern (23 bp):
TTCATTTATGTTCGTTTATTGTG
Found at i:5014279 original size:64 final size:64
Alignment explanation
Indices: 5014205--5014337 Score: 257
Period size: 64 Copynumber: 2.1 Consensus size: 64
5014195 TTGTATATCA
5014205 GTGATATATAAGAAATGAAAATCTATCTTAATGATCAATCTCAATTAGATAAGATTCTAAAGCT
1 GTGATATATAAGAAATGAAAATCTATCTTAATGATCAATCTCAATTAGATAAGATTCTAAAGCT
*
5014269 GTGATATATAAGAAATGAAAATCTATCTTAATGCTCAATCTCAATTAGATAAGATTCTAAAGCT
1 GTGATATATAAGAAATGAAAATCTATCTTAATGATCAATCTCAATTAGATAAGATTCTAAAGCT
5014333 GTGAT
1 GTGAT
5014338 GAGCCAACTT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (64 bp):
GTGATATATAAGAAATGAAAATCTATCTTAATGATCAATCTCAATTAGATAAGATTCTAAAGCT
Found at i:5015636 original size:31 final size:31
Alignment explanation
Indices: 5015593--5015659 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
5015583 TAACGGTAGA
5015593 CACCT-AAAATGTAACAGAAAAAA-TGTTAGG
1 CACCTAAAAATGTAACAGAAAAAACT-TTAGG
*
5015623 CACCTAAAAATGTAACAGAAAAAACTTTTGG
1 CACCTAAAAATGTAACAGAAAAAACTTTAGG
5015654 CACCTA
1 CACCTA
5015660 TTTTTAACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 5 0.15
31 28 0.82
32 1 0.03
ACGTcount: A:0.48, C:0.18, G:0.13, T:0.21
Consensus pattern (31 bp):
CACCTAAAAATGTAACAGAAAAAACTTTAGG
Found at i:5023699 original size:267 final size:266
Alignment explanation
Indices: 5023357--5023898 Score: 1048
Period size: 267 Copynumber: 2.0 Consensus size: 266
5023347 GAATGTATTT
5023357 TTTAAATGTGTGTTAAAGGTGAAGTGAATTTATGTTAAAGTGTTATATGTTTCATGAACTTTGGC
1 TTTAAATGTGTGTTAAAGGTGAAGTGAATTTATGTTAAAGTGTTATATGTTTCATGAACTTTGGC
* *
5023422 ATTCGCCCATTCCACTCGATATTAATCGGATGGAACTATGCGGTGTTCGACTCTCGGACAATGGA
66 ATTCGCCCATTCCACGCGATATTAATCGGATGGAACTATACGGTGTTCGACTCTCGGACAATGGA
5023487 ACAATATATGAAAACCAGCTTTGATCGTATTGTATTTCTCGAAAAAATGTATGAAATTATAATAT
131 ACAATATATGAAAACCAGCTTTGATCGTATTGTATTTCTCG-AAAAATGTATGAAATTATAATAT
*
5023552 TACACGTATGGTTATTTATCTATTATTTTTTTCTATTTTGATTATCGATATATTAATTTTATGAC
195 TACACATATGGTTATTTATCTATTATTTTTTTCTATTTTGATTATCGATATATTAATTTTATGAC
5023617 TTAATTA
260 TTAATTA
5023624 TTTAAATGTGTGTTAAAGGTGAAGTGAATTTATGTTAAAGTGTTATATGTTTCATGAACTTTGGC
1 TTTAAATGTGTGTTAAAGGTGAAGTGAATTTATGTTAAAGTGTTATATGTTTCATGAACTTTGGC
5023689 ATTCGCCCATTCCACGCGATATTAATCGGATGGAACTATACGGTGTTCGACTCTCGGACAATGGA
66 ATTCGCCCATTCCACGCGATATTAATCGGATGGAACTATACGGTGTTCGACTCTCGGACAATGGA
5023754 ACAATATATGAAAACCAGCTTTGATCGTATTGTATTTCTCGAAAAATGTATGAAATTATAATATT
131 ACAATATATGAAAACCAGCTTTGATCGTATTGTATTTCTCGAAAAATGTATGAAATTATAATATT
5023819 ACACATATGGTTATTTATCTATTATTTTTTTCTATTTTGATTATCGATATATTAATTTTATGACT
196 ACACATATGGTTATTTATCTATTATTTTTTTCTATTTTGATTATCGATATATTAATTTTATGACT
5023884 TAATTA
261 TAATTA
5023890 TTTAAATGT
1 TTTAAATGT
5023899 TATCAATCAA
Statistics
Matches: 272, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
266 103 0.38
267 169 0.62
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (266 bp):
TTTAAATGTGTGTTAAAGGTGAAGTGAATTTATGTTAAAGTGTTATATGTTTCATGAACTTTGGC
ATTCGCCCATTCCACGCGATATTAATCGGATGGAACTATACGGTGTTCGACTCTCGGACAATGGA
ACAATATATGAAAACCAGCTTTGATCGTATTGTATTTCTCGAAAAATGTATGAAATTATAATATT
ACACATATGGTTATTTATCTATTATTTTTTTCTATTTTGATTATCGATATATTAATTTTATGACT
TAATTA
Found at i:5027836 original size:251 final size:250
Alignment explanation
Indices: 5027386--5028140 Score: 1014
Period size: 251 Copynumber: 3.0 Consensus size: 250
5027376 TACTATTCAC
* * * * * * *
5027386 GTGAAGGCGCGTTTCTGGGGGCGCACCTTCTATTATTTTGTTAGAAAACATGTTATCATTGTCCT
1 GTGAAAGCGCGTTTC-CGGGGCGCGCCTTCCATTATTTTGTCAGAGAACATGTTATCATTGCCCT
* *
5027451 ATTATGTCACTCATGTCACCCGGGGGCACTATTCATTGATGCCTTATTATGGTTGAGGGGACGGT
65 ATTATGTCACTCATGTC-CCCCGGGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACGGT
* *
5027516 GAAAGCGCGTTTCCGGGGGGTGCCTTCCATTATTTTGTCAAAGAACATATTATCATTGCCCTATT
129 GAAAGCGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTCAAA-AACATGTTATCATTGCCCTATT
* * *
5027581 ATGTCACTTATGT-CCCTGGGCACTATTTATTGATGCCCTATTATGGTTGAAGGGACA
193 ATGTCACTCATGTCCCCTGGGCACTATTCATTGATGCCCTATTATGATTGAAGGGACA
* * *
5027638 GTGAAAGCGCGTTTCCGGGGACGCGTCTTCCATTATTTTCTCAGAGAACATGTTATTATTGCCCT
1 GTGAAAGCGCGTTTCCGGGG-CGCGCCTTCCATTATTTTGTCAGAGAACATGTTATCATTGCCCT
* * * *
5027703 ATTATGTCACTCATGTCCCCCGAGGCACTATTCATTGATGCCCTATTATAGTTAAGGGGACTGTG
65 ATTATGTCACTCATGTCCCCCGGGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACGGTG
5027768 AAAGCGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTCATAAAACATGTTATCATTGCCCTATTA
130 AAAGCGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTCA-AAAACATGTTATCATTGCCCTATTA
* *
5027833 TGTCACTCATGTCCCCTGAGGCACTATTCATTAATGCCCTATTATGATTG-AGAGGACG
194 TGTCACTCATGTCCCCTG-GGCACTATTCATTGATGCCCTATTATGATTGAAG-GGACA
* *
5027891 GTGAAAGCACGTTTCCGGGG-GGGCCTTCCATTATTTTGTCAGAGAACATGTTATCATTGCCCTA
1 GTGAAAGCGCGTTTCCGGGGCGCGCCTTCCATTATTTTGTCAGAGAACATGTTATCATTGCCCTA
* * *
5027955 TTATGTCACTCGTGTCCCCTGGGGCACTATTTATTGATGCCCTATTATGGTTGAGGGGACGGTGA
66 TTATGTCACTCATGTCCCCCGGGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACGGTGA
* ** * * * **
5028020 AAGCGCGTTTCCGGGGGCGCTCCTTTAATTATTTTGTCAGAAAACATGTAAACGTAACCCTATTA
131 AAGCGCGTTTCCGGGGG-GCGCCTTCCATTATTTTGTCA-AAAACATGTTATCATTGCCCTATTA
* * * * *
5028085 TATCACTCATGTCCCCCAGGGCACTATTCA-TGAATGCCTTATTATGTTTGAGGGGA
194 TGTCACTCATGT-CCCCTGGGCACTATTCATTG-ATGCCCTATTATGATTGAAGGGA
5028141 TAAAATGTGA
Statistics
Matches: 444, Mismatches: 50, Indels: 18
0.87 0.10 0.04
Matches are distributed among these distances:
251 233 0.52
252 154 0.35
253 57 0.13
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (250 bp):
GTGAAAGCGCGTTTCCGGGGCGCGCCTTCCATTATTTTGTCAGAGAACATGTTATCATTGCCCTA
TTATGTCACTCATGTCCCCCGGGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACGGTGA
AAGCGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTCAAAAACATGTTATCATTGCCCTATTATG
TCACTCATGTCCCCTGGGCACTATTCATTGATGCCCTATTATGATTGAAGGGACA
Found at i:5027974 original size:125 final size:126
Alignment explanation
Indices: 5027386--5028140 Score: 1000
Period size: 127 Copynumber: 6.0 Consensus size: 126
5027376 TACTATTCAC
* * * * * *
5027386 GTGAAGGCGCGTTTCTGGGGGCGCACCTTCTATTATTTTGTTAGAAAACATGTTATCATTGTCCT
1 GTGAAAGCGCGTTTCCGGGGG-GCGCCTTCCATTATTTTGTCAGAAAACATGTTATCATTGCCCT
* * *
5027451 ATTATGTCACTCATGTCACCCGGGGGCACTATTCATTGATGCCTTATTATGGTTGAGGGGACG
65 ATTATGTCACTCATGTC-CCCTGAGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACG
* *
5027514 GTGAAAGCGCGTTTCCGGGGGGTGCCTTCCATTATTTTGTCA-AAGAACATATTATCATTGCCCT
1 GTGAAAGCGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTCAGAA-AACATGTTATCATTGCCCT
* * * *
5027578 ATTATGTCACTTATGT-CCCTG-GGCACTATTTATTGATGCCCTATTATGGTTGAAGGGACA
65 ATTATGTCACTCATGTCCCCTGAGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACG
* * * * *
5027638 GTGAAAGCGCGTTTCCGGGGACGCGTCTTCCATTATTTTCTCAGAGAACATGTTATTATTGCCCT
1 GTGAAAGCGCGTTTCCGGGG-GGCGCCTTCCATTATTTTGTCAGAAAACATGTTATCATTGCCCT
* * * *
5027703 ATTATGTCACTCATGTCCCCCGAGGCACTATTCATTGATGCCCTATTATAGTTAAGGGGACT
65 ATTATGTCACTCATGTCCCCTGAGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACG
*
5027765 GTGAAAGCGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTCATAAAACATGTTATCATTGCCCTA
1 GTGAAAGCGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTCAGAAAACATGTTATCATTGCCCTA
* * *
5027830 TTATGTCACTCATGTCCCCTGAGGCACTATTCATTAATGCCCTATTATGATTGAGAGGACG
66 TTATGTCACTCATGTCCCCTGAGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACG
* *
5027891 GTGAAAGCACGTTTCCGGGGGG-GCCTTCCATTATTTTGTCAGAGAACATGTTATCATTGCCCTA
1 GTGAAAGCGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTCAGAAAACATGTTATCATTGCCCTA
* * *
5027955 TTATGTCACTCGTGTCCCCTGGGGCACTATTTATTGATGCCCTATTATGGTTGAGGGGACG
66 TTATGTCACTCATGTCCCCTGAGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACG
* ** * * * **
5028016 GTGAAAGCGCGTTTCCGGGGGCGCTCCTTTAATTATTTTGTCAGAAAACATGTAAACGTAACCCT
1 GTGAAAGCGCGTTTCCGGGGG-GCGCCTTCCATTATTTTGTCAGAAAACATGTTATCATTGCCCT
* * * *
5028081 ATTATATCACTCATGTCCCC-CAGGGCACTATTCA-TGAATGCCTTATTATGTTTGAGGGGA
65 ATTATGTCACTCATGTCCCCTGA-GGCACTATTCATTG-ATGCCCTATTATGGTTGAGGGGA
5028141 TAAAATGTGA
Statistics
Matches: 551, Mismatches: 67, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
124 55 0.10
125 169 0.31
126 124 0.23
127 184 0.33
128 19 0.03
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (126 bp):
GTGAAAGCGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTCAGAAAACATGTTATCATTGCCCTA
TTATGTCACTCATGTCCCCTGAGGCACTATTCATTGATGCCCTATTATGGTTGAGGGGACG
Found at i:5028112 original size:378 final size:379
Alignment explanation
Indices: 5027386--5028129 Score: 1104
Period size: 378 Copynumber: 2.0 Consensus size: 379
5027376 TACTATTCAC
* * * * *
5027386 GTGAAGGCGCGTTTCTGGGGGCGCACCTTCTATTATTTTGTTAGAAAACATGTTATCATTGTCCT
1 GTGAAAGCGCGTTTCCGGGGGCGCACCTTCCATTATTTTGTCAGAAAACATGTTATCATTGCCCT
* * * * *
5027451 ATTATGTCACTCATGTCACCCGGGGGCACTATTCATTGATGCCTTATTATGGTTGAGGGGACGGT
66 ATTATGTCACTCATGTCACCCGGAGGCACTATTCATTAATGCCCTATTATGATTGAGAGGACGGT
*
5027516 GAAAGCGCGTTTCCGGGGGGTGCCTTCCATTATTTTGTCAAAGAACATATTATCATTGCCCTATT
131 GAAAGCACGTTTCCGGGGGGTGCCTTCCATTATTTTGTCAAAGAACATATTATCATTGCCCTATT
*
5027581 ATGTCACTTATGTCCCTGGGCACTATTTATTGATGCCCTATTATGGTTGAAGGGACAGTGAAAGC
196 ATGTCACTCATGTCCCTGGGCACTATTTATTGATGCCCTATTATGGTTGAAGGGACAGTGAAAGC
* * * ** ** *
5027646 GCGTTTCCGGGGACGCGTCTTCCATTATTTTCTCAGAGAACATGTTATTATTGCCCTATTATGTC
261 GCGTTTCCGGGGACGCGTCTTCAATTATTTTCTCAGAAAACATGTAAACATAACCCTATTATATC
5027711 ACTCATGTCCCCCGAGGCACTATTCATTG-ATGCCCTATTATAGTTAAGGGGACT
326 ACTCATGTCCCCCGAGGCACTATTCA-TGAATGCCCTATTATAGTTAAGGGGACT
* *
5027765 GTGAAAGCGCGTTTCCGGGGG-GCGCCTTCCATTATTTTGTCATAAAACATGTTATCATTGCCCT
1 GTGAAAGCGCGTTTCCGGGGGCGCACCTTCCATTATTTTGTCAGAAAACATGTTATCATTGCCCT
*
5027829 ATTATGTCACTCATGTC-CCCTGAGGCACTATTCATTAATGCCCTATTATGATTGAGAGGACGGT
66 ATTATGTCACTCATGTCACCCGGAGGCACTATTCATTAATGCCCTATTATGATTGAGAGGACGGT
* *
5027893 GAAAGCACGTTTCCGGGGGG-GCCTTCCATTATTTTGTCAGAGAACATGTTATCATTGCCCTATT
131 GAAAGCACGTTTCCGGGGGGTGCCTTCCATTATTTTGTCAAAGAACATATTATCATTGCCCTATT
* * *
5027957 ATGTCACTCGTGTCCCCTGGGGCACTATTTATTGATGCCCTATTATGGTTGAGGGGACGGTGAAA
196 ATGTCACTCATGT-CCCT-GGGCACTATTTATTGATGCCCTATTATGGTTGAAGGGACAGTGAAA
* * * *
5028022 GCGCGTTTCCGGGGGCGC-TCCTTTAATTATTTTGTCAGAAAACATGTAAACGTAACCCTATTAT
259 GCGCGTTTCCGGGGACGCGT-CTTCAATTATTTTCTCAGAAAACATGTAAACATAACCCTATTAT
*
5028086 ATCACTCATGTCCCCC-AGGGCACTATTCATGAATGCCTTATTAT
323 ATCACTCATGTCCCCCGA-GGCACTATTCATGAATGCCCTATTAT
5028130 GTTTGAGGGG
Statistics
Matches: 327, Mismatches: 33, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
376 53 0.16
377 68 0.21
378 187 0.57
379 19 0.06
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (379 bp):
GTGAAAGCGCGTTTCCGGGGGCGCACCTTCCATTATTTTGTCAGAAAACATGTTATCATTGCCCT
ATTATGTCACTCATGTCACCCGGAGGCACTATTCATTAATGCCCTATTATGATTGAGAGGACGGT
GAAAGCACGTTTCCGGGGGGTGCCTTCCATTATTTTGTCAAAGAACATATTATCATTGCCCTATT
ATGTCACTCATGTCCCTGGGCACTATTTATTGATGCCCTATTATGGTTGAAGGGACAGTGAAAGC
GCGTTTCCGGGGACGCGTCTTCAATTATTTTCTCAGAAAACATGTAAACATAACCCTATTATATC
ACTCATGTCCCCCGAGGCACTATTCATGAATGCCCTATTATAGTTAAGGGGACT
Found at i:5028206 original size:23 final size:24
Alignment explanation
Indices: 5028140--5028208 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 24
5028130 GTTTGAGGGG
*
5028140 ATAAAATGTGAAGTTTGCATAAATTGG
1 ATAAAATGTGAAG--TG-ATAAATTGA
* *
5028167 ATAAAATGTTATG-GATAAATTGA
1 ATAAAATGTGAAGTGATAAATTGA
5028190 AT-AAATGTGAAGTGATAAA
1 ATAAAATGTGAAGTGATAAA
5028209 GTTAACATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
22 8 0.22
23 16 0.44
24 1 0.03
27 11 0.31
ACGTcount: A:0.46, C:0.01, G:0.20, T:0.32
Consensus pattern (24 bp):
ATAAAATGTGAAGTGATAAATTGA
Found at i:5028763 original size:217 final size:217
Alignment explanation
Indices: 5028375--5028812 Score: 697
Period size: 217 Copynumber: 2.0 Consensus size: 217
5028365 TTTTAACAAG
* * * *
5028375 ATAATGCAATTTAATTTCAATTTAATTACTGTGAACTATAATTGGAATATACTTGAATTTTGATT
1 ATAATGCAATTTAATTTCAATTTAAGTACTGTGAACTATAATTGGAATATACTTAAATTTCGAAT
* *
5028440 ACAATTTTAAATTTCAATTGGAATATTAAGTTCAATTTGAATTTTTATTTTATAAACTTTAACAA
66 ACAATTTTAAATTTCAATTGGAATATTAAGTTCAATTTGAATTTGTATTTTATAAAATTTAACAA
*
5028505 ACATTTAATGTTAAATTTGAATAAAAATAACATTAAAAAAA-TT-TTGTAACAACCATTAAACAT
131 ACATTTAATGTTAAATTTGAATAAAAATAACATTAAAAAAATTTGTTCTAACAACCATTAAACAT
*
5028568 TTAAATAACATTACAAAATTAC
196 TTAAATAACATAACAAAATTAC
*
5028590 ATAATGTAATTTAATTTCAATTTAAGTACTGTGAACTATAATTGGAATATAACTTTAAATTTCGA
1 ATAATGCAATTTAATTTCAATTTAAGTACTGTGAACTATAATTGGAATAT-AC-TTAAATTTCGA
5028655 ATACAATTTTAAATTTCAATTGGAATATTAAGTTCAATTTGAATTTGTA-TTTA-AAAATAATTA
64 ATACAATTTTAAATTTCAATTGGAATATTAAGTTCAATTTGAATTTGTATTTTATAAAAT--TTA
*
5028718 ACAAACATTTAATGTTAAATTTGAATAAAAAATAACATT-AAAAAATTTGTTCTAATAACCATTA
127 ACAAACATTTAATGTTAAATTTGAAT-AAAAATAACATTAAAAAAATTTGTTCTAACAACCATTA
*
5028782 AATATTTAAATAACATAACAAAATTAC
191 AACATTTAAATAACATAACAAAATTAC
5028809 ATAA
1 ATAA
5028813 ATTTCTGAAA
Statistics
Matches: 205, Mismatches: 11, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
215 52 0.25
216 6 0.03
217 91 0.44
218 14 0.07
219 42 0.20
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.39
Consensus pattern (217 bp):
ATAATGCAATTTAATTTCAATTTAAGTACTGTGAACTATAATTGGAATATACTTAAATTTCGAAT
ACAATTTTAAATTTCAATTGGAATATTAAGTTCAATTTGAATTTGTATTTTATAAAATTTAACAA
ACATTTAATGTTAAATTTGAATAAAAATAACATTAAAAAAATTTGTTCTAACAACCATTAAACAT
TTAAATAACATAACAAAATTAC
Found at i:5029268 original size:21 final size:20
Alignment explanation
Indices: 5029244--5029289 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
5029234 TTAGGCATAA
*
5029244 AACCTGGCGGTCTAGGAATGT
1 AACCT-GCGGGCTAGGAATGT
5029265 AACCCTGCGGGCTAGGAATGT
1 AA-CCTGCGGGCTAGGAATGT
5029286 AACC
1 AACC
5029290 CTACGGAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 2 0.09
21 18 0.78
22 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (20 bp):
AACCTGCGGGCTAGGAATGT
Found at i:5029290 original size:21 final size:21
Alignment explanation
Indices: 5029250--5029291 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
5029240 ATAAAACCTG
*
5029250 GCGGTCTAGGAATGTAACCCT
1 GCGGGCTAGGAATGTAACCCT
5029271 GCGGGCTAGGAATGTAACCCT
1 GCGGGCTAGGAATGTAACCCT
5029292 ACGGAGATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (21 bp):
GCGGGCTAGGAATGTAACCCT
Found at i:5031156 original size:14 final size:14
Alignment explanation
Indices: 5031137--5031171 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
5031127 TTAATAAAAA
*
5031137 AATAATATTTATAT
1 AATAATATTAATAT
5031151 AATAATATTAATAT
1 AATAATATTAATAT
5031165 AA-AATAT
1 AATAATAT
5031172 ACAAATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATAATATTAATAT
Found at i:5033477 original size:31 final size:31
Alignment explanation
Indices: 5033407--5033484 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
5033397 CTTTTAAAAC
* *
5033407 TTACAATACAGTCCCCCAACATTTAGTCTGT
1 TTACAATATAGTCCCCCAACATTTAGTCTAT
5033438 TTACAATATAGTCCCCCAACATTTAGTCTAT
1 TTACAATATAGTCCCCCAACATTTAGTCTAT
* *
5033469 TTGCAATATGGTCCCC
1 TTACAATATAGTCCCC
5033485 GACCGTTTGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (31 bp):
TTACAATATAGTCCCCCAACATTTAGTCTAT
Found at i:5034696 original size:30 final size:31
Alignment explanation
Indices: 5034662--5034733 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 31
5034652 GTTCCTAAGA
5034662 ACATAGGTAA-CTGTCCATATATCCCGAAGG
1 ACATAGGTAACCTGTCCATATATCCCGAAGG
* *
5034692 ACATAGGTAATCCTGTCCATATGTCCCGAATG
1 ACATAGGTAA-CCTGTCCATATATCCCGAAGG
5034724 ACATAGGTAA
1 ACATAGGTAA
5034734 ATTATTCATA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 10 0.26
32 28 0.74
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (31 bp):
ACATAGGTAACCTGTCCATATATCCCGAAGG
Found at i:5035022 original size:15 final size:13
Alignment explanation
Indices: 5034989--5035028 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 13
5034979 TATCTTATTG
*
5034989 TCACATATGCATA
1 TCACATATACATA
5035002 TCACATATACTATA
1 TCACATATAC-ATA
5035016 TTCACATATACAT
1 -TCACATATACAT
5035029 GTACTCATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 9 0.38
14 5 0.21
15 10 0.42
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.35
Consensus pattern (13 bp):
TCACATATACATA
Found at i:5035691 original size:3 final size:3
Alignment explanation
Indices: 5035679--5035755 Score: 97
Period size: 3 Copynumber: 26.3 Consensus size: 3
5035669 TCTAATTGTA
* *
5035679 ATT A-T ATT ATT ATC ATT ATC ATT ATT A-T ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
5035725 ATT ATT ATT A-T ATT ATT GTT ATT ATAT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT A
5035756 CAAATTTTTG
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
2 6 0.09
3 55 0.86
4 3 0.05
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:5035706 original size:23 final size:22
Alignment explanation
Indices: 5035679--5035755 Score: 97
Period size: 23 Copynumber: 3.5 Consensus size: 22
5035669 TCTAATTGTA
*
5035679 ATTATATTATTATCATTATCATT
1 ATTATATTATTAT-ATTATTATT
5035702 ATTATATTA-T-TATTATTATT
1 ATTATATTATTATATTATTATT
*
5035722 ATTATTATTATTATATTATTGTT
1 ATTA-TATTATTATATTATTATT
5035745 ATTATA-TATTA
1 ATTATATTATTA
5035756 CAAATTTTTG
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
20 12 0.24
21 11 0.22
22 4 0.08
23 22 0.45
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (22 bp):
ATTATATTATTATATTATTATT
Found at i:5039309 original size:31 final size:32
Alignment explanation
Indices: 5039274--5039335 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
5039264 ATTTTACATG
5039274 TACTAACTTATTT-TTCTCTTTTGTTTGTGTA
1 TACTAACTTATTTCTTCTCTTTTGTTTGTGTA
5039305 TACTAACTTATTTCTTCTCTTTTGTTTGTGT
1 TACTAACTTATTTCTTCTCTTTTGTTTGTGT
5039336 CATTTTGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.43
32 17 0.57
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.61
Consensus pattern (32 bp):
TACTAACTTATTTCTTCTCTTTTGTTTGTGTA
Found at i:5040589 original size:26 final size:25
Alignment explanation
Indices: 5040511--5040590 Score: 80
Period size: 26 Copynumber: 3.3 Consensus size: 25
5040501 CCAATTTTTG
5040511 ACATTCTATCTCTTTGAGACCTTGAA
1 ACATTCT-TCTCTTTGAGACCTTGAA
* *
5040537 ATA-T-TTCT-TTT-CGACC-TGAA
1 ACATTCTTCTCTTTGAGACCTTGAA
*
5040557 GCATTCTCTCTCTTTGAGACCTTGAA
1 ACATTCT-TCTCTTTGAGACCTTGAA
5040583 ACATTCTT
1 ACATTCTT
5040591 TCCACCTTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
20 5 0.12
21 5 0.12
22 4 0.10
23 6 0.14
24 4 0.10
25 6 0.14
26 12 0.29
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (25 bp):
ACATTCTTCTCTTTGAGACCTTGAA
Found at i:5041216 original size:17 final size:17
Alignment explanation
Indices: 5041196--5041228 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5041186 GAAAAGAAAA
5041196 AAAAAGCAACAACAAAG
1 AAAAAGCAACAACAAAG
*
5041213 AAAAAGCAAGAACAAA
1 AAAAAGCAACAACAAA
5041229 AAGAGGACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAAAGCAACAACAAAG
Found at i:5042379 original size:4 final size:4
Alignment explanation
Indices: 5042370--5042408 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
5042360 AAAAGTATAC
5042370 ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
5042409 AAATTTGGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
4 31 0.94
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:5042394 original size:22 final size:22
Alignment explanation
Indices: 5042366--5042408 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
5042356 CGAGAAAAGT
5042366 ATACACATACATACATACATAC
1 ATACACATACATACATACATAC
5042388 ATACACATACATACATACATA
1 ATACACATACATACATACATA
5042409 AAATTTGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (22 bp):
ATACACATACATACATACATAC
Found at i:5042395 original size:18 final size:18
Alignment explanation
Indices: 5042374--5042408 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
5042364 GTATACACAT
5042374 ACATACATACATACATAC
1 ACATACATACATACATAC
5042392 ACATACATACATACATA
1 ACATACATACATACATA
5042409 AAATTTGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (18 bp):
ACATACATACATACATAC
Found at i:5043045 original size:35 final size:36
Alignment explanation
Indices: 5043018--5043136 Score: 113
Period size: 36 Copynumber: 3.4 Consensus size: 36
5043008 ACAAAGTTGA
*
5043018 TCTCACTTGAGATC-GTTTCTC-AAAAACAAACTTTG
1 TCTCACTTGAGA-CAATTTCTCTAAAAACAAACTTTG
* *
5043053 TCTCGCTTGAGACAATTTCTCTAAAAACAAATTTTG
1 TCTCACTTGAGACAATTTCTCTAAAAACAAACTTTG
* * * *
5043089 TCTCATTTGAGACTATATCT-T-AAAGCAAA-TTTCG
1 TCTCACTTGAGACAATTTCTCTAAAAACAAACTTT-G
*
5043123 TCTCGCTTGAGACA
1 TCTCACTTGAGACA
5043137 TCATTTTCTC
Statistics
Matches: 70, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
33 3 0.04
34 20 0.29
35 18 0.26
36 29 0.41
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (36 bp):
TCTCACTTGAGACAATTTCTCTAAAAACAAACTTTG
Found at i:5043089 original size:36 final size:36
Alignment explanation
Indices: 5043033--5043136 Score: 124
Period size: 36 Copynumber: 3.0 Consensus size: 36
5043023 CTTGAGATCG
*
5043033 TTTCTC-AAAAACAAACTTTGTCTCGCTTGAGACAA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
** *
5043068 TTTCTCTAAAAACAAATTTTGTCTCATTTGAGACTA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
* * *
5043104 TATCT-T-AAAGCAAATTTCGTCTCGCTTGAGACA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACA
5043137 TCATTTTCTC
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
34 22 0.38
35 7 0.12
36 29 0.50
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (36 bp):
TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
Found at i:5043460 original size:29 final size:30
Alignment explanation
Indices: 5043375--5043485 Score: 174
Period size: 30 Copynumber: 3.8 Consensus size: 30
5043365 AAGACAATTT
5043375 CTTTTGAGAAAAAAATCTTTGAGTTTGTTC
1 CTTTTGAGAAAAAAATCTTTGAGTTTGTTC
*
5043405 CTTTTGAGAAAAAAATCTTTGATTTTGTTC
1 CTTTTGAGAAAAAAATCTTTGAGTTTGTTC
*
5043435 CTTTTGA-ATAAAAATCTTTGAGTTTGTTC
1 CTTTTGAGAAAAAAATCTTTGAGTTTGTTC
*
5043464 CTCTT--GAAAAAAATCTTTGAGT
1 CTTTTGAGAAAAAAATCTTTGAGT
5043486 CTATTTATTT
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
28 15 0.20
29 24 0.32
30 36 0.48
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (30 bp):
CTTTTGAGAAAAAAATCTTTGAGTTTGTTC
Found at i:5043497 original size:27 final size:27
Alignment explanation
Indices: 5043382--5043499 Score: 83
Period size: 30 Copynumber: 4.1 Consensus size: 27
5043372 TTTCTTTTGA
* * *
5043382 GAAAAAAATCTTTGAGTTTGTTCCTTTT
1 GAAAAAAATCTTTGAGTCTATT-CATTT
* * * *
5043410 GAGAAAAAAATCTTTGATTTTGTTCCTTTT
1 --GAAAAAAATCTTTGAGTCTATT-CATTT
* * *
5043440 GAATAAAAATCTTTGAGTTTGTTCCTCTT
1 GAA-AAAAATCTTTGAGTCTATTCAT-TT
*
5043469 GAAAAAAATCTTTGAGTCTATTTATTT
1 GAAAAAAATCTTTGAGTCTATTCATTT
5043496 GAAA
1 GAAA
5043500 CAAGTTTTGT
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
27 6 0.08
28 23 0.29
29 23 0.29
30 27 0.34
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (27 bp):
GAAAAAAATCTTTGAGTCTATTCATTT
Found at i:5043563 original size:87 final size:84
Alignment explanation
Indices: 5043444--5043603 Score: 214
Period size: 87 Copynumber: 1.9 Consensus size: 84
5043434 CCTTTTGAAT
*
5043444 AAAAATCTTTGAGTTTGTTCCTCTTGAAAAAAATCTTTGAGTCTATTTATTT-GAAACAAGTTTT
1 AAAAATCTTTGAGTTTGTTCCTCTTGAAAAAAATC-TTGAGTCTATTTATTTGGAAACAAATTTT
5043508 GTCTCTCTTTACAATTTTGA
65 GTCTCTCTTTACAATTTTGA
* * * * * *
5043528 AAAAATCTTTGAGATTTTTTCTTTTTGAAACAAAAATCTTGAGTTTGTTTCTTTGGAAACAAATT
1 AAAAATCTTTGAG-TTTGTTCCTCTTG-AA-AAAAATCTTGAGTCTATTTATTTGGAAACAAATT
5043593 TTGTCTCTCTT
63 TTGTCTCTCTT
5043604 AAGATAATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
84 13 0.20
85 10 0.15
86 15 0.23
87 27 0.42
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.46
Consensus pattern (84 bp):
AAAAATCTTTGAGTTTGTTCCTCTTGAAAAAAATCTTGAGTCTATTTATTTGGAAACAAATTTTG
TCTCTCTTTACAATTTTGA
Found at i:5043579 original size:30 final size:30
Alignment explanation
Indices: 5043528--5043590 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
5043518 ACAATTTTGA
*
5043528 AAAAATCTTTGAGATTTTTTCTTTTTGAAAC
1 AAAAATCTTTGAGATTTTTTC-TTTGGAAAC
5043559 AAAAATC-TTGAG-TTTGTTTCTTTGGAAAC
1 AAAAATCTTTGAGATTT-TTTCTTTGGAAAC
5043588 AAA
1 AAA
5043591 TTTTGTCTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 14 0.47
30 9 0.30
31 7 0.23
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.43
Consensus pattern (30 bp):
AAAAATCTTTGAGATTTTTTCTTTGGAAAC
Found at i:5043629 original size:65 final size:65
Alignment explanation
Indices: 5043545--5043742 Score: 314
Period size: 64 Copynumber: 3.0 Consensus size: 65
5043535 TTTGAGATTT
*
5043545 TTTCTTTTTGAAACAAAAATC-TTGAGTTTGTTTCTTTGGAAACAAATTTTGTCTCTCTTAAGAT
1 TTTC-TTTTGAAAC-AAAATCTTTGAGTCTGTTTCTTTGGAAACAAATTTTGTCTCTCTTAAGAT
5043609 AA
64 AA
5043611 TTTCTTTTGAAACGAAAATCTTTGAGTCTGTTTCTTTGG-AACAAAATTTTGTCTCTCTT-AGAT
1 TTTCTTTTGAAAC-AAAATCTTTGAGTCTGTTTCTTTGGAAAC-AAATTTTGTCTCTCTTAAGAT
5043674 AA
64 AA
*
5043676 TTTCTTTTGAAACAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTGTCT-TCTTAAGATAA
1 TTTCTTTTGAAACAAAATCTTTGAGTCTGTTTCTTTGGAAACAAATTTTGTCTCTCTTAAGATAA
5043740 TTT
1 TTT
5043743 TTTGAGTCTG
Statistics
Matches: 125, Mismatches: 3, Indels: 10
0.91 0.02 0.07
Matches are distributed among these distances:
63 4 0.03
64 44 0.35
65 40 0.32
66 37 0.30
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (65 bp):
TTTCTTTTGAAACAAAATCTTTGAGTCTGTTTCTTTGGAAACAAATTTTGTCTCTCTTAAGATAA
Found at i:5043648 original size:29 final size:29
Alignment explanation
Indices: 5043611--5043722 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
5043601 CTTAAGATAA
5043611 TTTCTTTTGAAACGAAAATCTTTGAGTCTG
1 TTTCTTTTGAAAC-AAAATCTTTGAGTCTG
* **
5043641 TTTC-TTTGGAACAAAAT-TTTGTCTCTCTTAG
1 TTTCTTTTGAAACAAAATCTTTG--AGTC-T-G
5043672 ATAATTTCTTTTGAAACAAAATCTTTGAGTCTG
1 ----TTTCTTTTGAAACAAAATCTTTGAGTCTG
*
5043705 TTTCTTTGGAAACAAAAT
1 TTTCTTTTGAAACAAAAT
5043723 TTGTCTTCTT
Statistics
Matches: 65, Mismatches: 7, Indels: 21
0.70 0.08 0.23
Matches are distributed among these distances:
27 4 0.06
28 5 0.08
29 26 0.40
30 5 0.08
31 1 0.02
33 1 0.02
34 1 0.02
35 6 0.09
36 12 0.18
37 4 0.06
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (29 bp):
TTTCTTTTGAAACAAAATCTTTGAGTCTG
Found at i:5043765 original size:46 final size:50
Alignment explanation
Indices: 5043695--5043790 Score: 164
Period size: 48 Copynumber: 2.0 Consensus size: 50
5043685 AAACAAAATC
5043695 TTTGAGTCTGTTTCTTTGGAAACAAAA-TTTGTCT-TCTTAAGATAATTT
1 TTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATAATTT
5043743 TTTGAGTCTG-TTCTTT-GAAACAAAATTTTGTCTCTCTTAAGATAATTT
1 TTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATAATTT
5043791 CTTTTGAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
46 9 0.20
47 13 0.28
48 24 0.52
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.48
Consensus pattern (50 bp):
TTTGAGTCTGTTTCTTTGGAAACAAAATTTTGTCTCTCTTAAGATAATTT
Done.