Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8415618
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 40
Found at i:7068898 original size:42 final size:41
Alignment explanation
Indices: 7068817--7068917 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
7068807 AGGTTTTATG
* * * * *
7068817 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACA
1 GATGACCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
* *
7068858 GATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACT
1 GATGACCCGAAGGACTT-AGCATCATGCTCGAAAGACTTACA
* *
7068900 GATGACACTAAGGACTTA
1 GATGACCCGAAGGACTTA
7068918 AATTTCTTAC
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
41 16 0.33
42 33 0.67
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (41 bp):
GATGACCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
Found at i:7074955 original size:6 final size:6
Alignment explanation
Indices: 7074946--7074981 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
7074936 TGCTAATAAG
7074946 AATGCA AATGCA AATGCA AATGCA AATGCA AATGCA
1 AATGCA AATGCA AATGCA AATGCA AATGCA AATGCA
7074982 CAAGGTGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
AATGCA
Found at i:7075762 original size:47 final size:46
Alignment explanation
Indices: 7075674--7075763 Score: 110
Period size: 47 Copynumber: 1.9 Consensus size: 46
7075664 CACAAAAAAT
* *
7075674 CCTAACCGCATGATATCTAATTCGCATGCTTGTTCGAGAAAAATAAA
1 CCTAACCGCATGATATCTAATTCGCATACTTATTC-AGAAAAATAAA
* *
7075721 CCTAACCGCATGATTTCTAGTTCGCATACATTTATTC-GAAAAA
1 CCTAACCGCATGATATCTAATTCGCATAC--TTATTCAGAAAAA
7075764 CGAAAATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
47 32 0.86
49 5 0.14
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.30
Consensus pattern (46 bp):
CCTAACCGCATGATATCTAATTCGCATACTTATTCAGAAAAATAAA
Found at i:7079377 original size:29 final size:30
Alignment explanation
Indices: 7079340--7079404 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
7079330 TTCCTTTGCT
* *
7079340 TTTGCTGT-GAGGGTTTTTGTTTTCTTTGG
1 TTTGTTGTGGAGGGTTTCTGTTTTCTTTGG
*
7079369 TTTGTTGTGGTGGGTTTCTGTTTTCTTTGG
1 TTTGTTGTGGAGGGTTTCTGTTTTCTTTGG
7079399 TTTGTT
1 TTTGTT
7079405 TTCATGGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.02, C:0.06, G:0.31, T:0.62
Consensus pattern (30 bp):
TTTGTTGTGGAGGGTTTCTGTTTTCTTTGG
Found at i:7080980 original size:195 final size:194
Alignment explanation
Indices: 7080607--7081100 Score: 961
Period size: 195 Copynumber: 2.5 Consensus size: 194
7080597 CATATTATTG
7080607 TAATTATCTCGATTACTTGAATCTAATCTGAAGCACAAGTATCGGTTTCTCTTATTTTCCTTTCA
1 TAATTATCTCGATTACTTGAATCTAATCTGAAGCACAAGTATCGGTTTCTCTTATTTTCCTTTCA
*
7080672 AAATAAAAACTTTTTTCAAGAAAAAAAATAAAAATATATATATATTAAAAACTCCATGATTAAAG
66 AAATAAAAACTTTTTTCAAGAAAAAAAATAAAAATAAATATATATTAAAAACTCCATGATTAAAG
7080737 CTAGATAAAAATGAATCTTAAACAATTTAGCAACATACACATATTATTGTAATTATCAAATTAC
131 CTAGATAAAAATGAATCTTAAACAATTTAGCAACATACACATATTATTGTAATTATCAAATTAC
7080801 TAATTATCTCGATTACTTGAATCTAATCTGAAGCACAAGTATCGGTTTCTCTTATTTTCCTTTCA
1 TAATTATCTCGATTACTTGAATCTAATCTGAAGCACAAGTATCGGTTTCTCTTATTTTCCTTTCA
7080866 AAATAAAAACTTTTTTCAAGAAAAAAAAATAAAAATAAATATATATTAAAAACTCCATGATTAAA
66 AAATAAAAACTTTTTTCAAG-AAAAAAAATAAAAATAAATATATATTAAAAACTCCATGATTAAA
7080931 GCTAGATAAAAATGAATCTTAAACAATTTAGCAACATACACATATTATTGTAATTATCAAATTAC
130 GCTAGATAAAAATGAATCTTAAACAATTTAGCAACATACACATATTATTGTAATTATCAAATTAC
7080996 TAATTATCTCGATTACTTGAATCTAATCTGAAGCACAAGTATCGGTTTCTCTTATTTTCCTTTCA
1 TAATTATCTCGATTACTTGAATCTAATCTGAAGCACAAGTATCGGTTTCTCTTATTTTCCTTTCA
*
7081061 AAATAAAAACTTTTTTCAAGAAAATAAATAAAAATAAATA
66 AAATAAAAACTTTTTTCAAGAAAAAAAATAAAAATAAATA
7081101 AATAAATAAA
Statistics
Matches: 297, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
194 104 0.35
195 193 0.65
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (194 bp):
TAATTATCTCGATTACTTGAATCTAATCTGAAGCACAAGTATCGGTTTCTCTTATTTTCCTTTCA
AAATAAAAACTTTTTTCAAGAAAAAAAATAAAAATAAATATATATTAAAAACTCCATGATTAAAG
CTAGATAAAAATGAATCTTAAACAATTTAGCAACATACACATATTATTGTAATTATCAAATTAC
Found at i:7082173 original size:15 final size:15
Alignment explanation
Indices: 7082140--7082218 Score: 58
Period size: 16 Copynumber: 5.2 Consensus size: 15
7082130 AAAACATATC
7082140 AAAAG-ATTATAAAATT
1 AAAAGTATTA-AAAA-T
7082156 AAAAGTATTAAAAAT
1 AAAAGTATTAAAAAT
* *
7082171 AAAAGATATCAAAGAT
1 AAAAG-TATTAAAAAT
*
7082187 ATAA-TA-TAAAAAT
1 AAAAGTATTAAAAAT
7082200 AAAA-TATTCAGAAAAT
1 AAAAGTATT-A-AAAAT
7082216 AAA
1 AAA
7082219 TTTAATAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
13 10 0.19
14 3 0.06
15 7 0.13
16 28 0.54
17 4 0.08
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.25
Consensus pattern (15 bp):
AAAAGTATTAAAAAT
Found at i:7082180 original size:41 final size:44
Alignment explanation
Indices: 7082130--7082218 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
7082120 AAGAATACAA
*
7082130 AAAACATATCAAA-AGAT-TATAAAATTAAAAGTATT-A-AAAAT
1 AAAACATATCAAAGAGATATATAAAAATAAAA-TATTCAGAAAAT
* *
7082171 AAAAGATATCAAAGATATAATATAAAAATAAAATATTCAGAAAAT
1 AAAACATATCAAAGAGAT-ATATAAAAATAAAATATTCAGAAAAT
7082216 AAA
1 AAA
7082219 TTTAATAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
41 12 0.30
42 3 0.08
43 4 0.10
44 13 0.32
45 8 0.20
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (44 bp):
AAAACATATCAAAGAGATATATAAAAATAAAATATTCAGAAAAT
Found at i:7085755 original size:23 final size:23
Alignment explanation
Indices: 7085723--7085771 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
7085713 TTGAGTACAT
7085723 TTTAATAAAAAT-TAATGTTT-TTA
1 TTTAA-AAAAATGTAAT-TTTATTA
7085746 TTTAAAAAAATGTAATTTTATTA
1 TTTAAAAAAATGTAATTTTATTA
7085769 TTT
1 TTT
7085772 TTTTATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
TTTAAAAAAATGTAATTTTATTA
Found at i:7087454 original size:23 final size:23
Alignment explanation
Indices: 7087400--7087465 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
7087390 TTGATTGCCT
* *
7087400 AACATTAAACAAACATGTTCATA
1 AACATTAAACGAACATGTTCACA
** *
7087423 AACGCTAAACGAATATGTTCACA
1 AACATTAAACGAACATGTTCACA
*
7087446 AACATTAAATGAACATGTTC
1 AACATTAAACGAACATGTTC
7087466 GTGAACACTA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.47, C:0.18, G:0.09, T:0.26
Consensus pattern (23 bp):
AACATTAAACGAACATGTTCACA
Found at i:7090025 original size:2 final size:2
Alignment explanation
Indices: 7090018--7090052 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7090008 TTAATAAAGC
7090018 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7090053 TTAGGCTCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7103684 original size:6 final size:6
Alignment explanation
Indices: 7103673--7103697 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7103663 ATTAATAAGA
7103673 TTGTGT TTGTGT TTGTGT TTGTGT T
1 TTGTGT TTGTGT TTGTGT TTGTGT T
7103698 CGTTTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (6 bp):
TTGTGT
Found at i:7105666 original size:20 final size:20
Alignment explanation
Indices: 7105643--7105757 Score: 169
Period size: 20 Copynumber: 5.7 Consensus size: 20
7105633 CGCGAACACA
7105643 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
*
7105663 TAAATCGCAACGTGTATCCG
1 TAAATCGCAACGCGTATCCG
*
7105683 TATATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
* *
7105703 TAAATCGCAACGAC-AATACG
1 TAAATCGCAACG-CGTATCCG
7105723 TAAAATCGCAACGCGTATCCG
1 T-AAATCGCAACGCGTATCCG
7105744 TAAATCGCAACGCG
1 TAAATCGCAACGCG
7105758 ATTTTTAAAG
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
20 67 0.80
21 17 0.20
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (20 bp):
TAAATCGCAACGCGTATCCG
Found at i:7105673 original size:40 final size:40
Alignment explanation
Indices: 7105605--7105758 Score: 177
Period size: 40 Copynumber: 3.8 Consensus size: 40
7105595 GATGTTCCAG
* ** * * *
7105605 AATCGCAACGCGAATATGAAAATTGCAACGCGAACACATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACGTA
* *
7105645 AATCGCAACGCGTATCCGTAAATCGCAACGTGTATC-CGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACACGTA
* *
7105685 TATCGCAACGCGTATCCGTAAATCGCAACGAC-AATACGTAA
1 AATCGCAACGCGTATCCGTAAATCGCAACG-CGAACACGT-A
7105726 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
7105759 TTTTTAAAGC
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 62 0.65
41 33 0.34
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.18
Consensus pattern (40 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACGTA
Found at i:7106176 original size:33 final size:33
Alignment explanation
Indices: 7106137--7106207 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
7106127 TTCACTTAGA
7106137 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
7106170 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
7106203 TTTCA
1 TTTCA
7106208 AGTTAGTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.11, C:0.24, G:0.17, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:7106313 original size:21 final size:20
Alignment explanation
Indices: 7106287--7106360 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 20
7106277 TGCAGAAGAG
7106287 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-AAATGAAAA
* **
7106308 TCGCAACGTGAAAATGACTA
1 TCGCAACGAGAAAATGAAAA
7106328 TCTGCAACGAGAAAAATGAAAA
1 TC-GCAACGAG-AAAATGAAAA
7106350 TCGCAACGAGA
1 TCGCAACGAGA
7106361 GAATCGCAAC
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
20 10 0.22
21 25 0.56
22 10 0.22
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.15
Consensus pattern (20 bp):
TCGCAACGAGAAAATGAAAA
Found at i:7106367 original size:14 final size:14
Alignment explanation
Indices: 7106348--7106404 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
7106338 GAAAAATGAA
7106348 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
7106362 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
7106381 AATCGCAATGAGAG
1 AATCGCAACGAGAG
7106395 AATCGCAACG
1 AATCGCAACG
7106405 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 19 0.56
15 1 0.03
16 2 0.06
17 1 0.03
18 1 0.03
19 10 0.29
ACGTcount: A:0.44, C:0.21, G:0.25, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:7106379 original size:33 final size:33
Alignment explanation
Indices: 7106341--7106420 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
7106331 GCAACGAGAA
7106341 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
*
7106374 AAATGAAAATCGCAATGAGAGAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
**
7106407 AAACCAAAATCGCA
1 AAATGAAAATCGCA
7106421 TTGCGATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.10
Consensus pattern (33 bp):
AAATGAAAATCGCAACGAGAGAATCGCAACGCG
Found at i:7106438 original size:19 final size:18
Alignment explanation
Indices: 7106416--7106479 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
7106406 GAAACCAAAA
*
7106416 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGA-TTTCATT
7106435 TCGCGTTGCGA-TTC---
1 TCGCGTTGCGATTTCATT
*
7106449 TCTCGTTGCGATTTCATT
1 TCGCGTTGCGATTTCATT
7106467 TCGCGTTGCGATT
1 TCGCGTTGCGATT
7106480 CTCTCGTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
14 10 0.26
15 3 0.08
17 3 0.08
18 12 0.32
19 10 0.26
ACGTcount: A:0.11, C:0.23, G:0.22, T:0.44
Consensus pattern (18 bp):
TCGCGTTGCGATTTCATT
Found at i:7106457 original size:14 final size:14
Alignment explanation
Indices: 7106438--7106493 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
7106428 TTTCATTTCG
7106438 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7106452 CGTTGCGATTTCATTTCG
1 CGTTGCGA-TTC---TCT
7106470 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
7106484 CGTTGCGATT
1 CGTTGCGATT
7106494 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
14 20 0.56
15 3 0.08
17 3 0.08
18 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7106468 original size:32 final size:33
Alignment explanation
Indices: 7106421--7106542 Score: 156
Period size: 32 Copynumber: 3.5 Consensus size: 33
7106411 CAAAATCGCA
7106421 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
7106454 TTGCGA-TTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
7106486 TTGCGATTTTCATTTCTCTCGTTGCGACAGTCATTCTCTCG
1 TTGCGATTTTCA-TT-TCGCGTT--G-C-G--ATTCTCTCG
7106527 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
7106543 ACCAAAACAA
Statistics
Matches: 79, Mismatches: 1, Indels: 12
0.86 0.01 0.13
Matches are distributed among these distances:
32 32 0.41
33 11 0.14
34 2 0.03
35 6 0.08
37 1 0.01
38 1 0.01
39 3 0.04
40 2 0.03
41 21 0.27
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:7106504 original size:21 final size:21
Alignment explanation
Indices: 7106478--7106542 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
7106468 CGCGTTGCGA
7106478 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
7106499 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
7106519 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
7106540 TTC
1 TTC
7106543 ACCAAAACAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:7106539 original size:20 final size:20
Alignment explanation
Indices: 7106477--7106540 Score: 92
Period size: 20 Copynumber: 3.1 Consensus size: 20
7106467 TCGCGTTGCG
7106477 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
***
7106497 ATTTCTCTCGTTGCGACAGTC
1 A-TTCTCTCGTTGCGATTTTC
7106518 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
7106538 ATT
1 ATT
7106541 TCACCAAAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 20 0.54
21 17 0.46
ACGTcount: A:0.12, C:0.25, G:0.16, T:0.47
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:7106557 original size:41 final size:41
Alignment explanation
Indices: 7106477--7106557 Score: 92
Period size: 41 Copynumber: 2.0 Consensus size: 41
7106467 TCGCGTTGCG
* **** *
7106477 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTCACTCAAAACAACAGTC
7106518 ATTCTCTCGTTGCGATTTTCATTTCAC-CAAAACAAACAGT
1 ATTCTCTCGTTGCGATTTTCATTTCACTCAAAAC-AACAGT
7106558 GTTGCAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
40 2 0.06
41 31 0.94
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTCACTCAAAACAACAGTC
Found at i:7108487 original size:92 final size:92
Alignment explanation
Indices: 7108201--7108512 Score: 592
Period size: 92 Copynumber: 3.4 Consensus size: 92
7108191 TAGATTGCTT
*
7108201 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7108266 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTG-TTTGTCTTTTGGTTGAA
7108294 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAA-TGTGTATTCTTTAAC-CTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7108357 TTTGTCTTTGTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTGTCTTTTGGTTGAA
7108384 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7108449 TTTGTCTTTGTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTGTCTTTTGGTTGAA
7108476 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
7108513 AATACCCTGA
Statistics
Matches: 216, Mismatches: 1, Indels: 5
0.97 0.00 0.02
Matches are distributed among these distances:
90 52 0.24
91 38 0.18
92 92 0.43
93 34 0.16
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.45
Consensus pattern (92 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTGTCTTTTGGTTGAA
Found at i:7108699 original size:33 final size:33
Alignment explanation
Indices: 7108612--7108731 Score: 138
Period size: 33 Copynumber: 3.7 Consensus size: 33
7108602 GTTTACTTTC
* * * *
7108612 GCAACACGAAACTTAAAATCGC-ACGAGAGAATC
1 GCAACGCGAAAC-CAAAATCGCAACGACAGAATA
**
7108645 GCAACGCG-AATGAAAATCGCAACGACAGAATA
1 GCAACGCGAAACCAAAATCGCAACGACAGAATA
*
7108677 GCAACGCGAAACCAAAATCGCAACGACAAAATCA
1 GCAACGCGAAACCAAAATCGCAACGACAGAAT-A
7108711 -CAACGCGAAACCAAAATCGCA
1 GCAACGCGAAACCAAAATCGCA
7108732 TTGCGATTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
31 8 0.11
32 19 0.25
33 48 0.63
34 1 0.01
ACGTcount: A:0.47, C:0.27, G:0.17, T:0.08
Consensus pattern (33 bp):
GCAACGCGAAACCAAAATCGCAACGACAGAATA
Found at i:7108701 original size:19 final size:19
Alignment explanation
Indices: 7108677--7108731 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 19
7108667 CGACAGAATA
7108677 GCAACGCGAAACCAAAATC
1 GCAACGCGAAACCAAAATC
7108696 GCAA--CG--A-CAAAATC
1 GCAACGCGAAACCAAAATC
*
7108710 ACAACGCGAAACCAAAATC
1 GCAACGCGAAACCAAAATC
7108729 GCA
1 GCA
7108732 TTGCGATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 10 0.34
15 1 0.03
16 2 0.07
17 2 0.07
18 1 0.03
19 13 0.45
ACGTcount: A:0.49, C:0.31, G:0.15, T:0.05
Consensus pattern (19 bp):
GCAACGCGAAACCAAAATC
Found at i:7108749 original size:19 final size:19
Alignment explanation
Indices: 7108727--7108898 Score: 141
Period size: 19 Copynumber: 9.6 Consensus size: 19
7108717 GAAACCAAAA
*
7108727 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7108746 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
7108760 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
7108779 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
*
7108795 T--CATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
7108812 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
**
7108831 TCGCGTTGCGATTTT-GGT
1 TCGCGTTGCGATTTTCATT
* *
7108849 TCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
7108868 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
7108888 TCGTGTTGCGA
1 TCGCGTTGCGA
7108899 AAGTAAACTA
Statistics
Matches: 123, Mismatches: 18, Indels: 23
0.75 0.11 0.14
Matches are distributed among these distances:
14 18 0.15
16 8 0.07
17 8 0.07
18 15 0.12
19 62 0.50
20 12 0.10
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7108774 original size:33 final size:33
Alignment explanation
Indices: 7108730--7108824 Score: 163
Period size: 33 Copynumber: 2.9 Consensus size: 33
7108720 ACCAAAATCG
7108730 CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
1 CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
* * *
7108763 CGTTGCGATTTTCATTTCGCATTGCGATTCTGT
1 CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
7108796 CATTGCGATTTTCATTTCGCGTTGCGATT
1 CATTGCGATTTTCATTTCGCGTTGCGATT
7108825 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45
Consensus pattern (33 bp):
CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
Found at i:7110467 original size:196 final size:196
Alignment explanation
Indices: 7110135--7110528 Score: 731
Period size: 196 Copynumber: 2.0 Consensus size: 196
7110125 ACAAAACGGG
7110135 AGGAGCCAGAGGAGATTGTGGTCCTCTCGTATCTTGGCGTTGGAGCGTTTGACGACGGGAAGCCC
1 AGGAGCCAGAGGAGATTGTGGTCCTCTCGTATCTTGGCGTTGGAGCGTTTGACGACGGGAAGCCC
7110200 AAGTATCTACCTCCCACCGATAGAGATAGAGCTGCAGTAGGCTTGTAGTTTCGGCATTATATGGC
66 AAGTATCTACCTCCCACCGATAGAGATAGAGCTGCAGTAGGCTTGTAGTTTCGGCATTATATGGC
7110265 TAAATCGATATATACGAGA-C-GCCTACCTGCATCCGCGTTTATAAAAATGTCCAT-AACAATTG
131 TAAATCGATATATACGAGACCTGCCTACCTGCATCCGCG-TTATAAAAATGTCCATAAACAATTG
7110327 GT
195 GT
7110329 AGGAGCCAGAGGAGATTGTGGTCCTCTCGTATGCTTGGCGTTGGAGCGTTTGACGACGGGAAGCA
1 AGGAGCCAGAGGAGATTGTGGTCCTCTCGTAT-CTTGGCGTTGGAGCGTTTGACGACGGGAAGC-
7110394 CCAAGTATCTACCTCCCACCGATAGAGATAGAGCTGCAGTAGGCTTGTAGTTTCGGCATTATATG
64 CCAAGTATCTACCTCCCACCGATAGAGATAGAGCTGCAGTAGGCTTGTAGTTTCGGCATTATATG
7110459 GCTAAATCGATATATACGAGACGCTGCCTACCTGCATCCGCGTTATAAAAATGTCCATAAACAAT
129 GCTAAATCGATATATACGAGAC-CTGCCTACCTGCATCCGCGTTATAAAAATGTCCATAAACAAT
7110524 TGGT
193 TGGT
7110528 A
1 A
7110529 AGTTTATAGA
Statistics
Matches: 194, Mismatches: 0, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
194 32 0.16
195 31 0.16
196 86 0.44
198 17 0.09
199 28 0.14
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (196 bp):
AGGAGCCAGAGGAGATTGTGGTCCTCTCGTATCTTGGCGTTGGAGCGTTTGACGACGGGAAGCCC
AAGTATCTACCTCCCACCGATAGAGATAGAGCTGCAGTAGGCTTGTAGTTTCGGCATTATATGGC
TAAATCGATATATACGAGACCTGCCTACCTGCATCCGCGTTATAAAAATGTCCATAAACAATTGG
T
Found at i:7110952 original size:19 final size:20
Alignment explanation
Indices: 7110936--7111054 Score: 173
Period size: 20 Copynumber: 6.3 Consensus size: 20
7110926 AAAAATGACT
7110936 ATCGCAATGC-GAAATGAAA
1 ATCGCAATGCGGAAATGAAA
7110955 ATCGCAATGC-GAAATGAAA
1 ATCGCAATGCGGAAATGAAA
*
7110974 ATCGCAA--C-G--A-GAGA
1 ATCGCAATGCGGAAATGAAA
7110988 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGCGGAAATGAAA
7111008 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGCGGAAATGAAA
7111028 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGCGGAAATGAAA
7111048 ATCGCAA
1 ATCGCAA
7111055 CGAGAGAATC
Statistics
Matches: 92, Mismatches: 2, Indels: 11
0.88 0.02 0.10
Matches are distributed among these distances:
14 10 0.11
15 1 0.01
16 1 0.01
17 3 0.03
19 27 0.29
20 50 0.54
ACGTcount: A:0.45, C:0.17, G:0.24, T:0.14
Consensus pattern (20 bp):
ATCGCAATGCGGAAATGAAA
Found at i:7111058 original size:74 final size:72
Alignment explanation
Indices: 7110936--7111072 Score: 256
Period size: 74 Copynumber: 1.9 Consensus size: 72
7110926 AAAAATGACT
7110936 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGA
7111001 AATGAAA
66 AATGAAA
7111008 ATCGCAATGCGGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCG
1 ATCGCAATGC-GAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCG
7111073 ATTTTCATTT
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
72 10 0.16
73 19 0.30
74 34 0.54
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.14
Consensus pattern (72 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGA
AATGAAA
Found at i:7111231 original size:105 final size:104
Alignment explanation
Indices: 7111069--7111338 Score: 413
Period size: 105 Copynumber: 2.6 Consensus size: 104
7111059 AGAATCGCAA
7111069 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
*
7111134 TTTGCATTGCGATTTTCATTTCGCATTGCGATTCTCTC-GT
66 TTCGCATTGCGATTTTCATTTCGCATTGCGATT-T-TCAGT
7111174 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
*
7111239 TTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATT
66 TTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCAGT
* * *
7111278 TCCGCA-TTGCGATTTC-CATGTTGGGATTTTCATTT-CGCATTGCGATTCTCTCGTTGCGATT
1 TGCG-ATTTTC-ATTTCGCA--TTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATT
7111339 GTAATTTCCG
Statistics
Matches: 155, Mismatches: 5, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
103 2 0.01
104 10 0.06
105 129 0.83
106 14 0.09
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.46
Consensus pattern (104 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
TTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCAGT
Found at i:7111306 original size:72 final size:72
Alignment explanation
Indices: 7111091--7111324 Score: 272
Period size: 72 Copynumber: 3.3 Consensus size: 72
7111081 TTCGCATTGC
* * *
7111091 GATTTTCATTTCCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTT-TGCATTGCGATTTT
1 GATTTTCATTT-CGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTTC
*
7111150 CAT-TTCG
65 CATGTTGG
* * * *
7111157 CA-TTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGA-TT
1 GATTTTC-ATT-TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTT
*
7111220 CTC-TCGTTGC
64 C-CAT-GTTGG
7111230 GATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTTCC
1 GATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTTCC
7111295 ATGTTGG
66 ATGTTGG
7111302 GATTTTCATTTCGCATTGCGATT
1 GATTTTCATTTCGCATTGCGATT
7111325 CTCTCGTTGC
Statistics
Matches: 140, Mismatches: 14, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
65 3 0.02
66 12 0.09
67 1 0.01
68 3 0.02
69 4 0.03
71 18 0.13
72 86 0.61
73 10 0.07
74 3 0.02
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (72 bp):
GATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTTCC
ATGTTGG
Found at i:7111353 original size:53 final size:52
Alignment explanation
Indices: 7111069--7111338 Score: 404
Period size: 53 Copynumber: 5.1 Consensus size: 52
7111059 AGAATCGCAA
7111069 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
*
7111122 TGCGATTTTCATTTTGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
7111174 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
*
7111227 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATT-T-TCATT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTC-GT
* * *
7111278 TCCGCA-TTGCGATTTC-CATGTTGGGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCG-ATTTTC-ATTTCGCA--TTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
7111332 TGCGATT
1 TGCGATT
7111339 GTAATTTCCG
Statistics
Matches: 200, Mismatches: 8, Indels: 17
0.89 0.04 0.08
Matches are distributed among these distances:
50 2 0.01
51 10 0.05
52 69 0.34
53 111 0.56
54 6 0.03
55 2 0.01
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.46
Consensus pattern (52 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
Found at i:7113444 original size:20 final size:20
Alignment explanation
Indices: 7113419--7113605 Score: 207
Period size: 20 Copynumber: 9.3 Consensus size: 20
7113409 CGTAGTTATA
* * *
7113419 TGCGATTTACAGATTCTCGT
1 TGCGATTTACGGATACGCGT
*
7113439 TGCGATTTACGGATTA-TCGT
1 TGCGATTTACGGA-TACGCGT
7113459 TGCGATTTACGGATACGCGT
1 TGCGATTTACGGATACGCGT
* *
7113479 TGCGATATACGGATACGCAT
1 TGCGATTTACGGATACGCGT
7113499 TGCGATTTACGGATACGCGT
1 TGCGATTTACGGATACGCGT
* *
7113519 TGCTATTTACGGATACACGT
1 TGCGATTTACGGATACGCGT
*
7113539 TGCGGTTTACGGATACGCGT
1 TGCGATTTACGGATACGCGT
* *
7113559 TGCGATTTATGTG-TTCGCGT
1 TGCGATTTACG-GATACGCGT
* ** *
7113579 TGCGATTTTCATATTCGCGT
1 TGCGATTTACGGATACGCGT
7113599 TGCGATT
1 TGCGATT
7113606 CTGAAATCGC
Statistics
Matches: 144, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.01
20 140 0.97
21 2 0.01
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (20 bp):
TGCGATTTACGGATACGCGT
Found at i:7113666 original size:39 final size:39
Alignment explanation
Indices: 7113573--7113666 Score: 95
Period size: 39 Copynumber: 2.4 Consensus size: 39
7113563 ATTTATGTGT
* *
7113573 TCGCGTTGCGATTTTCATATTCGCGTTGCGATTCTGAAA
1 TCGCGTTGCGATTTTCATATTCGCATTGCGATTCAGAAA
**
7113612 TCGCAATGCGAATTTT-ACTA-TCGCATTGCGATTTCA-AGAA
1 TCGCGTTGCG-ATTTTCA-TATTCGCATTGCGA-TTCAGA-AA
7113652 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
7113667 GGAAAACTGA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
39 25 0.56
40 20 0.44
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.37
Consensus pattern (39 bp):
TCGCGTTGCGATTTTCATATTCGCATTGCGATTCAGAAA
Found at i:7122905 original size:18 final size:17
Alignment explanation
Indices: 7122882--7122916 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
7122872 ATAAGGTCAT
7122882 ATAATTTTTATATTTTTA
1 ATAATTTTTA-ATTTTTA
7122900 ATAATTTTTAATTTTTA
1 ATAATTTTTAATTTTTA
7122917 CATCATAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
ATAATTTTTAATTTTTA
Found at i:7123716 original size:18 final size:20
Alignment explanation
Indices: 7123667--7123710 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
7123657 ATTGGCATCG
*
7123667 ATACCATCGAGTGAGTATCA
1 ATACCATCAAGTGAGTATCA
7123687 ATACCATCAAGTGAGTATCA
1 ATACCATCAAGTGAGTATCA
7123707 ATAC
1 ATAC
7123711 TCAAGTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (20 bp):
ATACCATCAAGTGAGTATCA
Found at i:7127935 original size:4 final size:4
Alignment explanation
Indices: 7127928--7128331 Score: 799
Period size: 4 Copynumber: 101.0 Consensus size: 4
7127918 TATATACACG
*
7127928 CATA CATA CATA CATA TATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
7127976 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
7128024 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
7128072 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
7128120 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
7128168 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
7128216 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
7128264 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
7128312 CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA
7128332 TATATGTCTA
Statistics
Matches: 398, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 398 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:7130022 original size:23 final size:23
Alignment explanation
Indices: 7129992--7130043 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
7129982 GAAAGGTTAT
7129992 GATTGATGGCAAAGATATCCGAA
1 GATTGATGGCAAAGATATCCGAA
7130015 GATTGATGGCAAAGATATCCGAA
1 GATTGATGGCAAAGATATCCGAA
7130038 GATTGA
1 GATTGA
7130044 ACTTAAAGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (23 bp):
GATTGATGGCAAAGATATCCGAA
Found at i:7131251 original size:18 final size:18
Alignment explanation
Indices: 7131228--7131263 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7131218 TGACTTTATT
*
7131228 TATTTAATCTCTTTTTAC
1 TATTTAATCTCATTTTAC
7131246 TATTTAATCTCATTTTAC
1 TATTTAATCTCATTTTAC
7131264 CAAAACCCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.17, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTTAATCTCATTTTAC
Found at i:7131744 original size:15 final size:15
Alignment explanation
Indices: 7131724--7131764 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
7131714 TATGAAGATT
7131724 TAAAATATTATTATA
1 TAAAATATTATTATA
7131739 TAAAATGA-TATTATA
1 TAAAAT-ATTATTATA
7131754 TCAAAAT-TTAT
1 T-AAAATATTAT
7131765 ATAAATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (15 bp):
TAAAATATTATTATA
Found at i:7131810 original size:2 final size:2
Alignment explanation
Indices: 7131803--7131829 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7131793 TGATGTGATA
7131803 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7131830 ATTTTGTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7136669 original size:21 final size:21
Alignment explanation
Indices: 7136645--7136693 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
7136635 AAGTTTTTAA
* *
7136645 AAAAATTGTATTTTTTTTATT
1 AAAAATTGTAATTTTATTATT
*
7136666 AAAAATAGTAATTTTATTATT
1 AAAAATTGTAATTTTATTATT
7136687 AAAAATT
1 AAAAATT
7136694 AAAAAGTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
AAAAATTGTAATTTTATTATT
Found at i:7141279 original size:55 final size:55
Alignment explanation
Indices: 7141202--7141772 Score: 882
Period size: 55 Copynumber: 10.4 Consensus size: 55
7141192 GGGAGTAAAC
** * **
7141202 CTCGAA-AATCTTCGTCAATCGTGTCTGCTCCCCA-TTCTTCCAGAGAGTACAAGA
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTT-CAGAGAGTATGAGA
* * * * *
7141256 CTCAAACGAT-TCTCGATAATCGTGTCTGCTCCCTATTTTTTCAGAGAGTATGAGA
1 CTCGAACAATCT-TCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
* * * *
7141311 CTCGAACAAT-TCTCAATAACCGTGCCTGCTCCCTATTTTCTTCAGAGAGAATGAGA
1 CTCGAACAATCT-TCAACAATCGTGTCTGCTCCCTA-TTTCTTCAGAGAGTATGAGA
7141367 CTCGAACAATCTTCAACGAA-CGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
1 CTCGAACAATCTTCAAC-AATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
7141422 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
*
7141477 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCATAGAGTATGAGA
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
*
7141532 CTCGAACAATCTTCAACAAGCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
*
7141587 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTTCTTCAGAGAGAATGAGA
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTA-TTTCTTCAGAGAGTATGAGA
*
7141643 CTCGAACAATCTTCAACAAACGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
7141698 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
*
7141753 CTCGAATAATCTTCAACAAT
1 CTCGAACAATCTTCAACAAT
7141773 TGTTGGGAAA
Statistics
Matches: 482, Mismatches: 27, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
54 8 0.02
55 368 0.76
56 103 0.21
57 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (55 bp):
CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGA
Found at i:7141629 original size:221 final size:221
Alignment explanation
Indices: 7141202--7141771 Score: 891
Period size: 221 Copynumber: 2.6 Consensus size: 221
7141192 GGGAGTAAAC
** * ** * *
7141202 CTCGAA-AATCTTCGTCAATCGTGTCTGCTCCCCA-TTCTTCCAGAGAGTACAAGACTCAAACGA
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTT-CAGAGAGTATGAGACTCGAACAA
* * * *
7141265 T-TCTCGATAATCGTGTCTGCTCCCTATTTTTTCAGAGAGTATGAGACTCGAACAAT-TCTCAAT
65 TCT-TCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCT-TCAAC
7141328 AACCGTGCCTGCTCCCTATTTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACGAACGTGTC
128 AACCGTGCCTGCTCCCTATTTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACGAACGTGTC
*
7141393 TGCTCCCTATTTCTTCAGAGAGTATGAGA
193 TGCTCCCTATTTCTTCAGAGAGAATGAGA
7141422 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAAT
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAAT
* *
7141487 CTTCAACAATCGTGTCTGCTCCCTATTTCTTCATAGAGTATGAGACTCGAACAATCTTCAACAAG
66 CTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAAC
* *
7141552 CGTGTCTGCTCCCTA-TTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAAC-AATCGTGTCTG
131 CGTGCCTGCTCCCTATTTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACGAA-CGTGTCTG
7141615 CTCCCTATTTTCTTCAGAGAGAATGAGA
195 CTCCCTA-TTTCTTCAGAGAGAATGAGA
*
7141643 CTCGAACAATCTTCAACAAACGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAAT
1 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAAT
*
7141708 CTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAATAATCTTCAACAA
66 CTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAA
7141772 TTGTTGGGAA
Statistics
Matches: 325, Mismatches: 19, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
219 2 0.01
220 57 0.18
221 259 0.80
222 7 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (221 bp):
CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAAT
CTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAAC
CGTGCCTGCTCCCTATTTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACGAACGTGTCTGC
TCCCTATTTCTTCAGAGAGAATGAGA
Found at i:7141701 original size:276 final size:275
Alignment explanation
Indices: 7141202--7141772 Score: 932
Period size: 276 Copynumber: 2.1 Consensus size: 275
7141192 GGGAGTAAAC
** *
7141202 CTCGAAAATCTTCGTCAATCGTGTCTGCTCCCCATTCTTCCAGAGAGTACAAGACTCAAACGATT
1 CTCGAAAATCTTCAACAATCGTGTCTGCTCCCCATTCTTCCAGAGAGTACAAGACTCAAACAATT
* * * * *
7141267 CTCGATAATCGTGTCTGCTCCCTATTTTTTCAGAGAGTATGAGACTCGAACAATTCTCAATAACC
66 CTCAACAAGCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATTCTCAACAACC
*
7141332 GTGCCTGCTCCCTATTTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACGAACGTGTCTGCT
131 GTGCCTGCTCCCTATTTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACAAACGTGTCTGCT
7141397 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCT
196 CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCT
7141462 TCAGAGAGTATGAGA
261 TCAGAGAGTATGAGA
* * ** *
7141477 CTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTT-CATAGAGTATGAGACTCGAACAA
1 CTCGAA-AATCTTCAACAATCGTGTCTGCTCCCCA-TTCTTCCAGAGAGTACAAGACTCAAACAA
7141541 -TCTTCAACAAGCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAA-TCTTCAAC
64 TTC-TCAACAAGCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATTC-TCAAC
* *
7141604 AATCGTGTCTGCTCCCTATTTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACAAACGTGTC
127 AACCGTGCCTGCTCCCTATTTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACAAACGTGTC
7141669 TGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTAT
192 TGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTAT
7141734 TTCTTCAGAGAGTATGAGA
257 TTCTTCAGAGAGTATGAGA
7141753 CTCGAATAATCTTCAACAAT
1 CTCGAA-AATCTTCAACAAT
7141773 TGTTGGGAAA
Statistics
Matches: 275, Mismatches: 17, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
275 10 0.04
276 260 0.95
277 5 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (275 bp):
CTCGAAAATCTTCAACAATCGTGTCTGCTCCCCATTCTTCCAGAGAGTACAAGACTCAAACAATT
CTCAACAAGCGTGTCTGCTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATTCTCAACAACC
GTGCCTGCTCCCTATTTTCTTCAGAGAGAATGAGACTCGAACAATCTTCAACAAACGTGTCTGCT
CCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCT
TCAGAGAGTATGAGA
Found at i:7142798 original size:12 final size:11
Alignment explanation
Indices: 7142772--7142835 Score: 62
Period size: 12 Copynumber: 5.6 Consensus size: 11
7142762 TTGAACCCTC
7142772 ATTTTTTCATT
1 ATTTTTTCATT
7142783 -TTTTTTCATT
1 ATTTTTTCATT
7142793 CATTTTTT-ATTTT
1 -ATTTTTTCA--TT
7142806 ATTATTTT-ATT
1 ATT-TTTTCATT
7142817 ATTTTTTCACTT
1 ATTTTTTCA-TT
7142829 ATTTTTT
1 ATTTTTT
7142836 TCTTCTTCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
10 14 0.30
11 7 0.15
12 18 0.39
13 7 0.15
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (11 bp):
ATTTTTTCATT
Found at i:7146329 original size:8 final size:8
Alignment explanation
Indices: 7146316--7146343 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7146306 AAAAGAAGAT
7146316 ATATATAC
1 ATATATAC
7146324 ATATATAC
1 ATATATAC
7146332 ATATATAC
1 ATATATAC
7146340 ATAT
1 ATAT
7146344 GGGAGAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (8 bp):
ATATATAC
Found at i:7163744 original size:39 final size:40
Alignment explanation
Indices: 7163701--7163792 Score: 127
Period size: 39 Copynumber: 2.4 Consensus size: 40
7163691 TTTAAAAAAT
* *
7163701 AATTTAAAATGTTAAT-GTCAA-ATAATTTAAGAAATTAAG
1 AATTTAGAATGTTAATAGT-AATAAAATTTAAGAAATTAAG
*
7163740 AATTTAGAATGTT-ATAGTAATAAAATTTAAGAAATTAGG
1 AATTTAGAATGTTAATAGTAATAAAATTTAAGAAATTAAG
7163779 AATTTAGAATGTTA
1 AATTTAGAATGTTA
7163793 GAATGAAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
38 4 0.09
39 43 0.91
ACGTcount: A:0.49, C:0.01, G:0.13, T:0.37
Consensus pattern (40 bp):
AATTTAGAATGTTAATAGTAATAAAATTTAAGAAATTAAG
Found at i:7163806 original size:39 final size:38
Alignment explanation
Indices: 7163720--7163806 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 38
7163710 TGTTAATGTC
* *
7163720 AAATAATTTAAGAAATTAAGAATTTAGAATGTTATAGT
1 AAATAATTTAAGAAATTAAGAATTTAGAATGTTAGAAT
* *
7163758 AATAAAATTTAAGAAATTAGGAATTTAGAATGTTAGAAT
1 AA-ATAATTTAAGAAATTAAGAATTTAGAATGTTAGAAT
7163797 GAAATAATTT
1 -AAATAATTT
7163807 GATAATTATG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.05
39 38 0.90
40 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.36
Consensus pattern (38 bp):
AAATAATTTAAGAAATTAAGAATTTAGAATGTTAGAAT
Found at i:7165512 original size:20 final size:20
Alignment explanation
Indices: 7165467--7165505 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7165457 ATGAAATGAC
7165467 TTAACCATTTGATTAAAAAA
1 TTAACCATTTGATTAAAAAA
*
7165487 TATAACCTTTTGA-TAAAAA
1 T-TAACCATTTGATTAAAAA
7165506 GGTTAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (20 bp):
TTAACCATTTGATTAAAAAA
Found at i:7173565 original size:211 final size:210
Alignment explanation
Indices: 7173301--7174127 Score: 1305
Period size: 211 Copynumber: 3.9 Consensus size: 210
7173291 ATATCGCGCT
* * * * * * *
7173301 ACTCAAGACAACACAAGTTCAACTTTATGACGAAGGGACGGCTGGTTGTCAACAACAATTTTCCA
1 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
* * *
7173366 ATTTCGGAGCCAATTTCAACTTCACAGCGAAGAATATTGGACTCCAGACGACGCAAGTTCAACTT
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTT
*
7173431 CACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCAATTTCAGAGCCAATTTTCAACTTCA
131 CACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCAATTTCAGAGCCAA-TTTCAACTTCA
7173496 CAGCGAAGGATATTGG
195 CAGCGAAGGATATTGG
* * *
7173512 ACTCTAGAAAACGCAAGTTCAACTTCACAATGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
1 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
*
7173577 ATTTCAGAGCCCATTTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
66 ATTTCAGAG-CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
* * *
7173642 TCACGACGAAAGGACCGCTGGTTGTCAACAACAACTTCTCAATTTCAAAGCCAATTTCAACTTCA
130 TCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCA
7173707 CAGCGAAGGATATTGG
195 CAGCGAAGGATATTGG
* *
7173723 AATCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACCTCCCA
1 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
* *
7173788 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGATAACGCAAGTTCAACTT
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTT
* * *
7173853 CACGACGAAGGGATCGCTGGTTGTCAACAACAACCTCCCAATTTCAGAGCTAATTTTCAACTTCA
131 CACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCAATTTCAGAGCCAA-TTTCAACTTCA
*
7173918 CAACGAAGGATATTGG
195 CAGCGAAGGATATTGG
*
7173934 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
1 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
*
7173999 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTT
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTT
* * * * * *
7174064 CACAACGAAGGGACGGTTGGTTGTCAACAACAATTTTCCAATTTC-GAAGTCAATTTCAACTTCA
131 CACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCAATTTCAG-AGCCAATTTCAACTTCA
7174128 TGGCGAAAGA
Statistics
Matches: 565, Mismatches: 48, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
210 112 0.20
211 351 0.62
212 102 0.18
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (210 bp):
ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTT
CACGACGAAGGGACCGCTGGTTGTCAACAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCAC
AGCGAAGGATATTGG
Found at i:7173954 original size:316 final size:315
Alignment explanation
Indices: 7173301--7174127 Score: 1305
Period size: 316 Copynumber: 2.6 Consensus size: 315
7173291 ATATCGCGCT
* * * * *
7173301 ACTCAAGACAACACAAGTTCAACTTTATGACGAAGGGACGGCTGGTTGTCAACAACAATTTTCCA
1 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTCT-CA
* * *
7173366 ATTTCGGAGCCAATTTCAACTTCACAGCGAAGAATATTGGACTCCAGACGACGCAAGTTCAACTT
65 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTT
7173431 CACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCAATTTCAGAGCCAATTTTCAACTTCA
130 CACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCAATTTCAGAGCCAA-TTTCAACTTCA
* * *
7173496 CAGCGAAGGATATTGGACTCTAGAAAACGCAAGTTCAACTTCACAATGAAGGGACCGCTGGTTGT
194 CAACGAAGGATATTGGACTCCAGAAAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGT
* * *
7173561 CAACAACAACTTCCCAATTTCAGAGCCCATTTTCAACTTCACAGCGAAGGATATTGG
259 CAACAACAACCTCCCAATTTCAGAGCCAATTTTCAACTTCACAACGAAGGATATTGG
* *
7173618 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAAGGACCGCTGGTTGTCAACAACAACTTCTCA
1 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAA-TTCTCA
* * *
7173683 ATTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTGGAATCTAGACAACGCAAGTTCAACTT
65 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTT
**
7173748 CACGACGAAGGGACCGCTGGTTGTCAACAACAACCTCCCAATTTCAGAGCCAATTTCAACTTCAC
130 CACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCAC
* * *
7173813 AACGAAGGATATTGGACTCCAGATAACGCAAGTTCAACTTCACGACGAAGGGATCGCTGGTTGTC
195 AACGAAGGATATTGGACTCCAGAAAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTC
*
7173878 AACAACAACCTCCCAATTTCAGAGCTAATTTTCAACTTCACAACGAAGGATATTGG
260 AACAACAACCTCCCAATTTCAGAGCCAATTTTCAACTTCACAACGAAGGATATTGG
* *
7173934 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
1 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAA-TTCTCA
*
7173999 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTT
65 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTT
* * * * *
7174064 CACAACGAAGGGACGGTTGGTTGTCAACAACAATTTTCCAATTTC-GAAGTCAATTTCAACTTCA
130 CACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCAATTTCAG-AGCCAATTTCAACTTCA
7174128 TGGCGAAAGA
Statistics
Matches: 469, Mismatches: 39, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
315 1 0.00
316 301 0.64
317 164 0.35
318 3 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (315 bp):
ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTCTCAA
TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
ACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACA
ACGAAGGATATTGGACTCCAGAAAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCA
ACAACAACCTCCCAATTTCAGAGCCAATTTTCAACTTCACAACGAAGGATATTGG
Found at i:7174159 original size:105 final size:105
Alignment explanation
Indices: 7173301--7174127 Score: 1278
Period size: 105 Copynumber: 7.8 Consensus size: 105
7173291 ATATCGCGCT
* * * * * *
7173301 ACTCAAGACAACACAAGTTCAACTTTATGACGAAGGGACGGCTGGTTGTCAACAACAATTTTCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
* *
7173366 ATTTCGGAGCCAATTTCAACTTCACAGCGAAGAATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
7173406 ACTCCAGACGACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
7173471 ATTTCAGAGCCAATTTTCAACTTCACAGCGAAGGATATTGG
66 ATTTCAGAGCCAA-TTTCAACTTCACAGCGAAGGATATTGG
* * * * *
7173512 ACTCTAGAAAACGCAAGTTCAACTTCACAATGAAGGGACCGCTGGTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
*
7173577 ATTTCAGAGCCCATTTTCAACTTCACAGCGAAGGATATTGG
66 ATTTCAGAG-CCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
7173618 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAAGGACCGCTGGTTGTCAACAACAACTTCTCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
*
7173683 ATTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * **
7173723 AATCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAACCTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
*
7173788 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * **
7173828 ACTCCAGATAACGCAAGTTCAACTTCACGACGAAGGGATCGCTGGTTGTCAACAACAACCTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
* *
7173893 ATTTCAGAGCTAATTTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAA-TTTCAACTTCACAGCGAAGGATATTGG
*
7173934 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
7173999 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
7174039 ACTCGAGACAACGCAAGTTCAACTTCACAACGAAGGGACGGTTGGTTGTCAACAACAATTTTCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
*
7174104 ATTTC-GAAGTCAATTTCAACTTCA
66 ATTTCAG-AGCCAATTTCAACTTCA
7174128 TGGCGAAAGA
Statistics
Matches: 669, Mismatches: 49, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
104 1 0.00
105 378 0.57
106 287 0.43
107 3 0.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (105 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAACAATTTCCCA
ATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:7175733 original size:12 final size:12
Alignment explanation
Indices: 7175694--7175759 Score: 55
Period size: 12 Copynumber: 5.5 Consensus size: 12
7175684 CGATTTTATC
7175694 ATTTA-TTAT-T
1 ATTTATTTATAT
* *
7175704 ATTTATATAAAT
1 ATTTATTTATAT
*
7175716 ATTTTATTTATTT
1 A-TTTATTTATAT
7175729 ATTTATTATATAT
1 ATTTATT-TATAT
* *
7175742 ATATATATATAT
1 ATTTATTTATAT
7175754 ATTTAT
1 ATTTAT
7175760 ATTTTCCTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
10 5 0.12
11 2 0.05
12 18 0.42
13 18 0.42
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTTATTTATAT
Found at i:7175735 original size:17 final size:18
Alignment explanation
Indices: 7175694--7175761 Score: 63
Period size: 17 Copynumber: 4.0 Consensus size: 18
7175684 CGATTTTATC
7175694 ATTTATTATTATTTATAT
1 ATTTATTATTATTTATAT
** *
7175712 AAATATT-TTATTTATTT
1 ATTTATTATTATTTATAT
*
7175729 ATTTATTA-TATATATAT
1 ATTTATTATTATTTATAT
*
7175746 ATATA-TA-TATTTATAT
1 ATTTATTATTATTTATAT
7175762 TTTCCTTTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
16 10 0.25
17 25 0.62
18 5 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTATTATTATTTATAT
Found at i:7175904 original size:2 final size:2
Alignment explanation
Indices: 7175899--7175948 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
7175889 TTTTTTGTAT
7175899 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7175941 TA TA TA TA
1 TA TA TA TA
7175949 CTATTAATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7176023 original size:16 final size:16
Alignment explanation
Indices: 7175995--7176046 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 16
7175985 ATTTCGTTTG
7175995 TTTTTTTTATTA-TTA
1 TTTTTTTTATTATTTA
*
7176010 TTTTTCTTTTTTATTTA
1 TTTTT-TTTATTATTTA
* *
7176027 TTTTATTTATCTACTTA
1 TTTTTTTTAT-TATTTA
7176044 TTT
1 TTT
7176047 GTTATTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 5 0.17
16 10 0.33
17 15 0.50
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTTTATTATTTA
Found at i:7186672 original size:156 final size:156
Alignment explanation
Indices: 7186491--7186792 Score: 419
Period size: 156 Copynumber: 1.9 Consensus size: 156
7186481 AAAAACAAAA
* *
7186491 AAAAAATTGATTAATGAAATTTGGGT-AATCAAGTTCAA-TCGATTAACCAAATTAACCGCTTGA
1 AAAAAATTGATTAATGAAATTTGGGTAAACCAA-TT-AAGTCGATTAACCAAATTAACCACTTGA
* * * *
7186554 ACACCTATACTTTTAGTTGTTTTTATATCTTTATCGCTATGAGTTTTAAAACACACGAATCTAAC
64 ACAACTATACTTTCAATAGTTTTTATATCTTTATCGCTATGAGTTTTAAAACACACGAATCTAAC
7186619 TGAATTTCATTTCATTTTATCGTTAAAG
129 TGAATTTCATTTCATTTTATCGTTAAAG
* * ** *
7186647 AAAAAATTGGTTAATGAAATTTGGGTAAACCAATTAAGTCGGTTAATTAAATTAACCATTTGAAC
1 AAAAAATTGATTAATGAAATTTGGGTAAACCAATTAAGTCGATTAACCAAATTAACCACTTGAAC
* * * *
7186712 AATTATACTTTCAATAGTTTTTCTATCTTTATCGCTATGAGTTTTAAAACACTCTAATCTAACTG
66 AACTATACTTTCAATAGTTTTTATATCTTTATCGCTATGAGTTTTAAAACACACGAATCTAACTG
* *
7186777 TATTTCATTTCTTTTT
131 AATTTCATTTCATTTT
7186793 TTTGGATAAT
Statistics
Matches: 127, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
155 2 0.02
156 120 0.94
157 5 0.04
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (156 bp):
AAAAAATTGATTAATGAAATTTGGGTAAACCAATTAAGTCGATTAACCAAATTAACCACTTGAAC
AACTATACTTTCAATAGTTTTTATATCTTTATCGCTATGAGTTTTAAAACACACGAATCTAACTG
AATTTCATTTCATTTTATCGTTAAAG
Found at i:7195173 original size:25 final size:25
Alignment explanation
Indices: 7195141--7195192 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
7195131 AGAAAACATG
7195141 CATTTTGTATCAAGCTAAAGAAACC
1 CATTTTGTATCAAGCTAAAGAAACC
7195166 CATTTTGTATCAAGCTAAAGAAACC
1 CATTTTGTATCAAGCTAAAGAAACC
7195191 CA
1 CA
7195193 GAAAGAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (25 bp):
CATTTTGTATCAAGCTAAAGAAACC
Found at i:7199871 original size:19 final size:18
Alignment explanation
Indices: 7199842--7199880 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
7199832 AGCACTTGCC
7199842 TCATTTTCTTCTTTTTAT
1 TCATTTTCTTCTTTTTAT
7199860 TCATTCTTCTTCTTTTTAT
1 TCATT-TTCTTCTTTTTAT
7199879 TC
1 TC
7199881 TTAAAGCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.10, C:0.21, G:0.00, T:0.69
Consensus pattern (18 bp):
TCATTTTCTTCTTTTTAT
Found at i:7201744 original size:3 final size:3
Alignment explanation
Indices: 7201736--7201784 Score: 89
Period size: 3 Copynumber: 16.0 Consensus size: 3
7201726 ATTGATTTAT
7201736 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
7201782 TTA
1 TTA
7201785 AATAAATATA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7201793 original size:22 final size:22
Alignment explanation
Indices: 7201736--7201795 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
7201726 ATTGATTTAT
* *
7201736 TTATTATTATTAT-TATTATTA
1 TTATTAATATAATATATTATTA
* *
7201757 TTATTATTATTATATATTATTA
1 TTATTAATATAATATATTATTA
7201779 TTATTAA-ATAAATATAT
1 TTATTAATAT-AATATAT
7201796 ATATATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
21 15 0.43
22 20 0.57
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTATTAATATAATATATTATTA
Found at i:7201798 original size:28 final size:28
Alignment explanation
Indices: 7201737--7201801 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
7201727 TTGATTTATT
* * *
7201737 TATTAT-TATTATTATTATTATTATTAT
1 TATTATATATTATTATTATTATAATAAA
7201764 TATTATATATTATTATTATTA-AATAAA
1 TATTATATATTATTATTATTATAATAAA
7201791 TATATATATAT
1 TAT-TATATAT
7201802 ATATATATAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 12 0.36
28 21 0.64
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (28 bp):
TATTATATATTATTATTATTATAATAAA
Found at i:7202226 original size:13 final size:13
Alignment explanation
Indices: 7202198--7202235 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
7202188 TGAACCTGCA
*
7202198 AAAAAAAGGAAA-
1 AAAAAAAGAAAAC
*
7202210 AAAAACAGAAAAC
1 AAAAAAAGAAAAC
7202223 AAAAAAAGAAAAC
1 AAAAAAAGAAAAC
7202236 GAAAGGAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.82, C:0.08, G:0.11, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAAC
Found at i:7203467 original size:12 final size:11
Alignment explanation
Indices: 7203435--7203459 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7203425 TTTTCCGATA
7203435 TTTCTAAATAT
1 TTTCTAAATAT
7203446 TTTCTAAATAT
1 TTTCTAAATAT
7203457 TTT
1 TTT
7203460 TTTAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTCTAAATAT
Found at i:7205658 original size:14 final size:14
Alignment explanation
Indices: 7205639--7205681 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
7205629 TTTTAAATAA
7205639 TTTACATTTACATT
1 TTTACATTTACATT
* *
7205653 TTTACATTCACATA
1 TTTACATTTACATT
*
7205667 TTTACATTTGCATT
1 TTTACATTTACATT
7205681 T
1 T
7205682 GGCATTTGCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.28, C:0.16, G:0.02, T:0.53
Consensus pattern (14 bp):
TTTACATTTACATT
Found at i:7211400 original size:114 final size:114
Alignment explanation
Indices: 7211192--7211417 Score: 362
Period size: 114 Copynumber: 2.0 Consensus size: 114
7211182 AAGTGCCATG
* *
7211192 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTTAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* * * *
7211257 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAATT
66 TGATTCGGTAGGAACCCCAAAACCAATCATTGGAATTAAAAGATGAATT
*
7211306 TGCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* * *
7211371 TGATTCGGTAGGAACCCCATAACCGATCATTGGAATTGAAAGATGAA
66 TGATTCGGTAGGAACCCCAAAACCAATCATTGGAATTAAAAGATGAA
7211418 CTGCATGATC
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 102 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (114 bp):
TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
TGATTCGGTAGGAACCCCAAAACCAATCATTGGAATTAAAAGATGAATT
Found at i:7213901 original size:22 final size:22
Alignment explanation
Indices: 7213870--7213924 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
7213860 ATCTACACTC
* *
7213870 TTCAAAGATGATAGATTCCCTT
1 TTCAAAGATGACAGATTACCTT
* *
7213892 TTTAAAGATGACAGATTATCTT
1 TTCAAAGATGACAGATTACCTT
7213914 TTCAAAGATGA
1 TTCAAAGATGA
7213925 AAGCTTTATC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (22 bp):
TTCAAAGATGACAGATTACCTT
Found at i:7214550 original size:116 final size:116
Alignment explanation
Indices: 7214310--7216252 Score: 3271
Period size: 116 Copynumber: 17.0 Consensus size: 116
7214300 TTAGCAAAGA
** * * *
7214310 TTTAAATTCATCATTCAATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAAGAA--C-TCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
7214372 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
7214423 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
7214488 CTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
* *
7214539 TTTAAATTCATCATTTGATAGATTAGCATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
7214604 CTGAAGAAGGAATAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
7214655 TTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
7214720 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACATTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
7214771 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
7214836 CTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
7214887 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTCGAGTTCATAATGAGAAGAA--C-TCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
7214949 CT---G-AGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
7214996 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTCGAGTTCATAATGAGAAGAA--C-TCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
* *
7215058 CT---GAA-GAAGAAGAAGTTCATAATAAGAAAAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
7215105 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
7215170 CTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
7215221 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
7215286 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
7215337 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAA
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
7215402 CTGAAGAAGGAAGAAGAAGTTTATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
7215453 TTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
7215518 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
* *
7215569 TTTAAATTCATCATTTGATGGATTAACATTGCCAGATAGAGTTCATAATAAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
7215634 TTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
7215685 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
* *
7215750 CTGAAGCA-G--GTAG-AGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
7215797 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAA
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
7215862 CTGAAGAAGGAAGAAGAAGTTTATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
7215913 TTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
7215978 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
7216029 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAA
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
7216094 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
* * * * ** * * * *
7216145 CTCAAATCCATCACTTGATGGAGCAGCTTTTCCA-G-AGAAGTTCATAATGAGAAGAA-T--TTA
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAG-AGTTCATAATGAGAAGAACTCGTCA
* ** *
7216205 TCT---GAA-GAAGAAGAAGTTCATAATAAGAAGAGCTTGTTCAACTTTTTG
65 TCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
7216253 CATAATTCTA
Statistics
Matches: 1753, Mismatches: 61, Indels: 37
0.95 0.03 0.02
Matches are distributed among these distances:
108 38 0.02
109 209 0.12
110 2 0.00
111 1 0.00
112 115 0.07
113 62 0.04
114 4 0.00
115 27 0.02
116 1295 0.74
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (116 bp):
TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
Found at i:7216234 original size:17 final size:17
Alignment explanation
Indices: 7216180--7216235 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
7216170 GCTTTTCCAG
*
7216180 AGAAGTTCATAATGAGA
1 AGAAGTTCATAATAAGA
* *
7216197 AGAA-TTTATCTGAAGAAGA
1 AGAAGTTCA--T-AATAAGA
7216216 AGAAGTTCATAATAAGA
1 AGAAGTTCATAATAAGA
7216233 AGA
1 AGA
7216236 GCTTGTTCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
16 3 0.10
17 13 0.43
18 2 0.07
19 9 0.30
20 3 0.10
ACGTcount: A:0.50, C:0.05, G:0.21, T:0.23
Consensus pattern (17 bp):
AGAAGTTCATAATAAGA
Found at i:7216372 original size:84 final size:82
Alignment explanation
Indices: 7216218--7216401 Score: 226
Period size: 84 Copynumber: 2.2 Consensus size: 82
7216208 GAAGAAGAAG
* * * * * *
7216218 AAGTTCATAATAAGAAGAGCTTGTTCAACTTTTTGCATAATTCTATCACAGAAGGAGATAGATTA
1 AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCA
*
7216283 GCATCAACCTTTCCAG-AGA
66 ACATCAACC---CCAGCAGA
* * * *
7216302 AAGTTCATAATGAGAAGAGCTTATTTAACCTTTTGAATGACTCTATCACAGAAGGAAATAGGTCA
1 AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCA
*
7216367 ACATCATCCCCAGCAGA
66 ACATCAACCCCAGCAGA
7216384 AAGTTCATAATAAGAAGA
1 AAGTTCATAATAAGAAGA
7216402 ACTCATCTGA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
81 4 0.05
82 20 0.23
84 62 0.72
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (82 bp):
AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCA
ACATCAACCCCAGCAGA
Found at i:7216580 original size:3 final size:3
Alignment explanation
Indices: 7216572--7216621 Score: 82
Period size: 3 Copynumber: 16.0 Consensus size: 3
7216562 ATTGATTTAT
7216572 TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA T-TA TTA TTA TTA
7216619 TTA
1 TTA
7216622 AATAAATATA
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7216592 original size:19 final size:19
Alignment explanation
Indices: 7216568--7216621 Score: 92
Period size: 19 Copynumber: 2.8 Consensus size: 19
7216558 CCATATTGAT
7216568 TTATTTATTATTATTATTA
1 TTATTTATTATTATTATTA
7216587 TTATTTATTATTATTATTA
1 TTATTTATTATTATTATTA
7216606 -TATATTATTATTATTA
1 TTAT-TTATTATTATTA
7216622 AATAAATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 3 0.09
19 31 0.91
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTTATTATTATTATTA
Found at i:7216594 original size:16 final size:16
Alignment explanation
Indices: 7216575--7216621 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
7216565 GATTTATTTA
7216575 TTATTATTATTATTAT
1 TTATTATTATTATTAT
7216591 TTATTATTATTATTAT
1 TTATTATTATTATTAT
*
7216607 ATATTATTATTATTA
1 TTATTATTATTATTA
7216622 AATAAATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTATTATTATTATTAT
Found at i:7217059 original size:13 final size:13
Alignment explanation
Indices: 7217031--7217068 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
7217021 TGAACCTGCA
*
7217031 AAAAAAAGGAAA-
1 AAAAAAAGAAAAC
*
7217043 AAAAACAGAAAAC
1 AAAAAAAGAAAAC
7217056 AAAAAAAGAAAAC
1 AAAAAAAGAAAAC
7217069 GAAAGGAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.82, C:0.08, G:0.11, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAAC
Found at i:7218016 original size:20 final size:21
Alignment explanation
Indices: 7217970--7218016 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
7217960 CTGCTTTTAA
*
7217970 ATATATCGTTCTAATTGTATT
1 ATATATTGTTCTAATTGTATT
* *
7217991 -TTTATTGTTTTAATTGT-TT
1 ATATATTGTTCTAATTGTATT
7218010 ATATATT
1 ATATATT
7218017 TAAATATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.62
Consensus pattern (21 bp):
ATATATTGTTCTAATTGTATT
Found at i:7218299 original size:12 final size:11
Alignment explanation
Indices: 7218267--7218291 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7218257 TTTTCCGATA
7218267 TTTCTAAATAT
1 TTTCTAAATAT
7218278 TTTCTAAATAT
1 TTTCTAAATAT
7218289 TTT
1 TTT
7218292 TTTAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTCTAAATAT
Found at i:7224538 original size:20 final size:20
Alignment explanation
Indices: 7224513--7224601 Score: 124
Period size: 20 Copynumber: 4.5 Consensus size: 20
7224503 GGTAACGAAT
7224513 TTGACAAAACCGATTGAAAA
1 TTGACAAAACCGATTGAAAA
* * *
7224533 TTGACAAAACTGGTTGAAAT
1 TTGACAAAACCGATTGAAAA
*
7224553 TTGACAAAACCGATTGGAAA
1 TTGACAAAACCGATTGAAAA
*
7224573 TTGACAAAACCAATTGAAAA
1 TTGACAAAACCGATTGAAAA
*
7224593 TTGGCAAAA
1 TTGACAAAA
7224602 GCGGTTTCAA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.22
Consensus pattern (20 bp):
TTGACAAAACCGATTGAAAA
Found at i:7224620 original size:20 final size:19
Alignment explanation
Indices: 7224572--7224640 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 19
7224562 CCGATTGGAA
* **
7224572 ATTGACAAAACCAATTGAAA
1 ATTGACAAAACCAGTT-TCA
* * *
7224592 ATTGGCAAAAGCGGTTTCA
1 ATTGACAAAACCAGTTTCA
*
7224611 ATTTGACAAACCCAGTTTCA
1 A-TTGACAAAACCAGTTTCA
7224631 ATTGACAAAA
1 ATTGACAAAA
7224641 TCGATAAAGA
Statistics
Matches: 37, Mismatches: 11, Indels: 3
0.73 0.22 0.06
Matches are distributed among these distances:
19 10 0.27
20 27 0.73
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.25
Consensus pattern (19 bp):
ATTGACAAAACCAGTTTCA
Found at i:7225119 original size:2 final size:2
Alignment explanation
Indices: 7225112--7225138 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7225102 TATCGATACT
7225112 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7225139 GGATATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7225174 original size:213 final size:215
Alignment explanation
Indices: 7224915--7225336 Score: 600
Period size: 213 Copynumber: 2.0 Consensus size: 215
7224905 TCGGTACTTT
*
7224915 TATATAGATATGGGTATTTTTATTCTAATATATTTCTCAAACAATTTGCACGCAAAATGTATCGA
1 TATATAGATATGGATATTTTTATTCTAATATATTTCTCAAACAATTTGCACGCAAAATGTATCGA
* * * *
7224980 TAC-ACATATATAAAGTATCGATACTTGTAATTTCAAAACCTATTACTTTAAAGTAATAGGTTAA
66 TACAACATATATAAAATATCGATACTTATAATTTC-AAACCTATTACATTAAAGTAATAGGTAAA
* *
7225044 TTAACAATGTAAACGGTAAAAG-TCTA-CACGTATATTGATAATAGGCGTAAAT-ACCAAGTATC
130 TTAACAATGTAAACGGTAAAAGTTCTATCA-GTATAATGAAAATAGGCGTAAATGACCAAGTATC
*
7225106 GATACTTATATATATATATATA
194 GATACTCATATATATATATATA
* * * *
7225128 TATATATATATGGATATTTTTATTCTACTATGTTTCTCAAACAATTTGCACGTAAAATGTATCGA
1 TATATAGATATGGATATTTTTATTCTAATATATTTCTCAAACAATTTGCACGCAAAATGTATCGA
* * *
7225193 TACATATATATATAAAATATTGATACTTATAATTTCAAACCTATTGCATTAAAGTAATAGGTAAA
66 TACA-ACATATATAAAATATCGATACTTATAATTTCAAACCTATTACATTAAAGTAATAGGTAAA
* * * * *
7225258 TTAACAATGTACACGGTAAACGTTTTTATCAGTATAATGAAAATAGGCGTAAATGTCCAAGTTTC
130 TTAACAATGTAAACGGTAAAAG-TTCTATCAGTATAATGAAAATAGGCGTAAATGACCAAGTATC
7225323 GATACTCATATATA
194 GATACTCATATATA
7225337 AAGTATCGAT
Statistics
Matches: 183, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
213 63 0.34
214 46 0.25
215 27 0.15
216 24 0.13
217 23 0.13
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (215 bp):
TATATAGATATGGATATTTTTATTCTAATATATTTCTCAAACAATTTGCACGCAAAATGTATCGA
TACAACATATATAAAATATCGATACTTATAATTTCAAACCTATTACATTAAAGTAATAGGTAAAT
TAACAATGTAAACGGTAAAAGTTCTATCAGTATAATGAAAATAGGCGTAAATGACCAAGTATCGA
TACTCATATATATATATATA
Found at i:7225389 original size:131 final size:131
Alignment explanation
Indices: 7225186--7225668 Score: 632
Period size: 131 Copynumber: 3.7 Consensus size: 131
7225176 CACGTAAAAT
* * * * * *
7225186 GTATCGATACATATATATATAAAATATTGATACTTATAATTTC-AAACCTATTGCATTAAAGTAA
1 GTATCGATAC-T-CATATATAAAGTATCGATACTTATAATTTCGAAACATATTACTTTAAAGTAA
* * *
7225250 TAGGTAAATTAACAATGTACACGGTAAACGTTTTTATCAGTATAATGAAAATAGGCGTAAATGTC
64 TAGGTAAATTAACAATGTACACGGTAAAAGTTTTTACCGGTATAATGAAAATAGGCGTAAATGTC
7225315 CAA
129 CAA
* *
7225318 GTTTCGATACTCATATATAAAGTATCGATACTTATAATTTCGAAACCTATTACTTTAAAGTAATA
1 GTATCGATACTCATATATAAAGTATCGATACTTATAATTTCGAAACATATTACTTTAAAGTAATA
** * * *
7225383 TTTAAATTAACAATGTACACAGTAAATA-TTTCTACCGGTATAATGAAAATAGGCGTAAATGACC
66 GGTAAATTAACAATGTACACGGTAAA-AGTTTTTACCGGTATAATGAAAATAGGCGTAAATGTCC
7225447 AA
130 AA
*
7225449 GTATCGATACTCATATATAAAGTATTGATACTTATAATTTCGAAACATATTACTTTAAAGTAATA
1 GTATCGATACTCATATATAAAGTATCGATACTTATAATTTCGAAACATATTACTTTAAAGTAATA
* *** **
7225514 TGTAAATTAACAATGTACACGGTAAAAGTTTTTACCGGTATAATGAAAATAGAATTAAATGTAAA
66 GGTAAATTAACAATGTACACGGTAAAAGTTTTTACCGGTATAATGAAAATAGGCGTAAATGTCCA
7225579 A
131 A
* * * **
7225580 GTAT-AAAAATTGTCATAT-AAGTATCGATACTTATAATTTCGAAACATATTACTTTAAAGTAAT
1 GTATCGATACTCAT-ATATAAAGTATCGATACTTATAATTTCGAAACATATTACTTTAAAGTAAT
* *
7225643 AGATAAATTAACAATATACACGGTAA
65 AGGTAAATTAACAATGTACACGGTAA
7225669 TATGTTGATA
Statistics
Matches: 312, Mismatches: 35, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
130 99 0.32
131 204 0.65
132 9 0.03
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (131 bp):
GTATCGATACTCATATATAAAGTATCGATACTTATAATTTCGAAACATATTACTTTAAAGTAATA
GGTAAATTAACAATGTACACGGTAAAAGTTTTTACCGGTATAATGAAAATAGGCGTAAATGTCCA
A
Found at i:7229581 original size:35 final size:36
Alignment explanation
Indices: 7229529--7229596 Score: 120
Period size: 35 Copynumber: 1.9 Consensus size: 36
7229519 ATGATTTGAT
*
7229529 CATTAATGTTATCAAATTATAATAAATTGGTCAAAC
1 CATTAATGTTATCAAATTATAATAAATCGGTCAAAC
7229565 CATTAATG-TATCAAATTATAATAAATCGGTCA
1 CATTAATGTTATCAAATTATAATAAATCGGTCA
7229597 CTTAGCTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 23 0.74
36 8 0.26
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (36 bp):
CATTAATGTTATCAAATTATAATAAATCGGTCAAAC
Found at i:7229769 original size:18 final size:19
Alignment explanation
Indices: 7229746--7229784 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
7229736 ATTTGACCCT
7229746 AAACATAGAAAAA-GGATC
1 AAACATAGAAAAAGGGATC
7229764 AAACATAGAAAAAGGGATC
1 AAACATAGAAAAAGGGATC
7229783 AA
1 AA
7229785 TCTTTTCGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.62, C:0.10, G:0.18, T:0.10
Consensus pattern (19 bp):
AAACATAGAAAAAGGGATC
Found at i:7231932 original size:23 final size:22
Alignment explanation
Indices: 7231892--7231934 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7231882 ATAACTCGGT
* *
7231892 TAAAAAATTTTTTTTAAGGTGG
1 TAAAAAATTTCTTCTAAGGTGG
7231914 TAAAAAATGTTCTTCTAAGGT
1 TAAAAAAT-TTCTTCTAAGGT
7231935 AATTCGTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (22 bp):
TAAAAAATTTCTTCTAAGGTGG
Found at i:7236769 original size:25 final size:26
Alignment explanation
Indices: 7236730--7236785 Score: 96
Period size: 25 Copynumber: 2.2 Consensus size: 26
7236720 ATCATCCTTT
*
7236730 TGAATGTGGTTTAAGATTAAGAGATG
1 TGAATGTGGTATAAGATTAAGAGATG
7236756 -GAATGTGGTATAAGATTAAGAGATG
1 TGAATGTGGTATAAGATTAAGAGATG
7236781 TGAAT
1 TGAAT
7236786 TAAAATACCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 24 0.86
26 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.30, T:0.32
Consensus pattern (26 bp):
TGAATGTGGTATAAGATTAAGAGATG
Found at i:7243689 original size:14 final size:14
Alignment explanation
Indices: 7243652--7243682 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
7243642 TTAAAATATT
7243652 TAAATAAATTCTAA
1 TAAATAAATTCTAA
7243666 TAAATAAATTCTAA
1 TAAATAAATTCTAA
7243680 TAA
1 TAA
7243683 TTTAATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (14 bp):
TAAATAAATTCTAA
Found at i:7247541 original size:15 final size:14
Alignment explanation
Indices: 7247509--7247537 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7247499 TGAAAAAAAC
7247509 ATAAAAAGAAAATA
1 ATAAAAAGAAAATA
7247523 ATAAAAAGAAAATA
1 ATAAAAAGAAAATA
7247537 A
1 A
7247538 ATAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (14 bp):
ATAAAAAGAAAATA
Found at i:7247705 original size:37 final size:37
Alignment explanation
Indices: 7247635--7247908 Score: 232
Period size: 37 Copynumber: 7.5 Consensus size: 37
7247625 AATTCAAAAC
7247635 TATAT-AGTTTTC-AAAATG-TTTT-AAA--A-ATAT
1 TATATAAGTTTTCAAAAATGTTTTTAAAACTATATAT
* *
7247665 TATATAAGTTTTAAAAAACGTTTTTAAAACTATATAT
1 TATATAAGTTTTCAAAAATGTTTTTAAAACTATATAT
* *
7247702 TATATAATTTATTCGAAAATGTTTTTAAAACTATATAT
1 TATATAAGTT-TTCAAAAATGTTTTTAAAACTATATAT
* * * *
7247740 TATATAAGTTTT-TAAAATGATTTTAAAATTATATGT
1 TATATAAGTTTTCAAAAATGTTTTTAAAACTATATAT
* * *
7247776 TATATATA-TTTTCTAAAATGTTTTAAAAACTATATGT
1 TATATA-AGTTTTCAAAAATGTTTTTAAAACTATATAT
* *
7247813 TATAT-AGTTTTCAAAAATATTTTAAAAAACTATATAT
1 TATATAAGTTTTCAAAAATGTTTT-TAAAACTATATAT
*
7247850 TACCCAT-A-TTTTC-AAAATGTTTTTTTAAAAACTATATAT
1 TA--TATAAGTTTTCAAAAATG--TTTTT-AAAACTATATAT
*
7247889 TATATATATATTTTCAAAAA
1 TATATA-A-GTTTTCAAAAA
7247909 CCGTTTGCAA
Statistics
Matches: 201, Mismatches: 21, Indels: 32
0.79 0.08 0.13
Matches are distributed among these distances:
30 5 0.02
31 6 0.03
32 5 0.02
33 4 0.02
34 3 0.01
35 1 0.00
36 45 0.22
37 63 0.31
38 38 0.19
39 22 0.11
41 5 0.02
42 4 0.02
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (37 bp):
TATATAAGTTTTCAAAAATGTTTTTAAAACTATATAT
Found at i:7247810 original size:73 final size:74
Alignment explanation
Indices: 7247635--7247894 Score: 263
Period size: 74 Copynumber: 3.6 Consensus size: 74
7247625 AATTCAAAAC
* *
7247635 TATATAGTTTTCAAAATGTTTT--AAA--A-ATATTATATAAGTTTTAAAAAACGTTTTTAAAAC
1 TATATAGTTTTCAAAATGTTTTAAAAACTATATATTATATAAGTTTTAAAAAATGATTTTAAAAC
7247695 TATATATTA
66 TATATATTA
* * *
7247704 TATA-ATTTATTCGAAAATGTTTTTAAAACTATATATTATATAAGTTTT-TAAAATGATTTTAAA
1 TATATAGTT-TTC-AAAATGTTTTAAAAACTATATATTATATAAGTTTTAAAAAATGATTTTAAA
* *
7247767 ATTATATGTTA
64 ACTATATATTA
* *
7247778 TATATA-TTTTCTAAAATGTTTTAAAAACTATATGTTATAT-AGTTTTCAAAAAT-ATTTTAAAA
1 TATATAGTTTTC-AAAATGTTTTAAAAACTATATATTATATAAGTTTTAAAAAATGATTTT--AA
7247840 AACTATATATTA
63 AACTATATATTA
***
7247852 CCCATA-TTTTCAAAATGTTTTTTTAAAAACTATATATTATATA
1 TATATAGTTTTCAAAATG---TTTTAAAAACTATATATTATATA
7247895 TATATTTTCA
Statistics
Matches: 160, Mismatches: 16, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
68 3 0.02
69 7 0.04
70 10 0.06
72 14 0.09
73 40 0.25
74 48 0.30
75 17 0.11
76 21 0.13
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (74 bp):
TATATAGTTTTCAAAATGTTTTAAAAACTATATATTATATAAGTTTTAAAAAATGATTTTAAAAC
TATATATTA
Found at i:7248652 original size:27 final size:28
Alignment explanation
Indices: 7248588--7248655 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 28
7248578 GGGTTTGGTG
* *
7248588 TTTCAAGAGAAACATTTTCAAAGGTTTTT
1 TTTCAAGAGAAACAATTTCAAA-GTGTTT
7248617 TTTCAAGAGAAACAATTTCAAA-TGTTT
1 TTTCAAGAGAAACAATTTCAAAGTGTTT
7248644 TTTCAAGAGAAA
1 TTTCAAGAGAAA
7248656 TTGTCTCAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 16 0.43
29 21 0.57
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (28 bp):
TTTCAAGAGAAACAATTTCAAAGTGTTT
Found at i:7248738 original size:67 final size:67
Alignment explanation
Indices: 7248644--7248770 Score: 177
Period size: 67 Copynumber: 1.9 Consensus size: 67
7248634 TCAAATGTTT
* ** *
7248644 TTTCAAGAGAAATTGTCTCAAGGGAGACA-AAATTTGGTTTCAAGAAAAACATAT-TCAAAGATT
1 TTTCAAGAGAAACTACCTCAAGAGAGACACAAATTT-GTTTCAAGAAAAACA-ATCTCAAAGATT
7248707 GGTG
64 GGTG
*
7248711 TTTCAAGAGAAACTACCTCAAGAGAGACACAAATTTGTTTCAAGAGAAACAATCTCAAAG
1 TTTCAAGAGAAACTACCTCAAGAGAGACACAAATTTGTTTCAAGAAAAACAATCTCAAAG
7248771 GTTTTTGTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
66 2 0.04
67 45 0.85
68 6 0.11
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (67 bp):
TTTCAAGAGAAACTACCTCAAGAGAGACACAAATTTGTTTCAAGAAAAACAATCTCAAAGATTGG
TG
Found at i:7248977 original size:84 final size:83
Alignment explanation
Indices: 7248764--7249726 Score: 825
Period size: 84 Copynumber: 11.7 Consensus size: 83
7248754 GAGAAACAAT
* * * * * *
7248764 CTCAAAGGT-TTTTGTTGACAGATAACTCTCCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCT
* * *
7248828 CGGAGCTGAGTGTAATCGAA
65 -TGAGCTGAGCGTAGTCGAA
*** * *
7248848 CTCGGGGGTC----GTTGGCAGATAACCATTCTCGACTTAAGTTATGCTGCAAATGATGTGCCGT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCC-T
7248909 TGAGCTGAGCGTAGTCGAA
65 TGAGCTGAGCGTAGTCGAA
* * *
7248928 CTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT
7248993 GGAGCTGAGCGTAGTCGAA
66 -GAGCTGAGCGTAGTCGAA
* * * *
7249012 CTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTGGACTTAAGTTATGCTGCAAATGACGTGCCTT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT
*
7249077 GGAGTTGAGCGTAGTCGAA
66 -GAGCTGAGCGTAGTCGAA
* ** * * * *
7249096 CTCAAAGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCT
* * *
7249161 CGAAGCTGAGTGTAATCGAA
65 TG-AGCTGAGCGTAGTCGAA
*** * * * *
7249181 CTCGGGGGTC---T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGACGTGCCTT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT
* *
7249242 GGAGTTGAGCGTAGTCAAA
66 -GAGCTGAGCGTAGTCGAA
* ** * *
7249261 CTCAAAGGTCTTTTGGTCACAGATATCCCTTCTAGACTTAAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCT
* * *
7249326 CGAAGCTGAGTGTAATCGAA
65 TG-AGCTGAGCGTAGTCGAA
*** * * * *
7249346 CTCGGGGGTC---T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGACGTGCCTT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT
*
7249407 GGAGTTGAGCGTAGTCGAA
66 -GAGCTGAGCGTAGTCGAA
* ** * * * *
7249426 CTCAAAGGTCTTTTGGTCACAAATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCT
* * *
7249491 CGAAGCTGAGTGTAATCGAA
65 TG-AGCTGAGCGTAGTCGAA
** * * * *
7249511 CTCAGGGGTC---T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGACGTGCCTT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT
*
7249572 GGAGTTGAGCGTAGTCGAA
66 -GAGCTGAGCGTAGTCGAA
* ** ** * *
7249591 CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTATCCTTGAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTG-CCT
* * *
7249656 CGAAGCTGAGTGTAATCGAA
65 TG-AGCTGAGCGTAGTCGAA
*** * * *
7249676 CTCGGGGGTC---T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
1 CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAAT
7249727 AGTTTGTTTA
Statistics
Matches: 689, Mismatches: 160, Indels: 63
0.76 0.18 0.07
Matches are distributed among these distances:
80 97 0.14
81 181 0.26
82 4 0.01
83 5 0.01
84 306 0.44
85 96 0.14
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (83 bp):
CTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCCTT
GAGCTGAGCGTAGTCGAA
Found at i:7249237 original size:165 final size:165
Alignment explanation
Indices: 7248764--7249726 Score: 1527
Period size: 165 Copynumber: 5.8 Consensus size: 165
7248754 GAGAAACAAT
* * * *
7248764 CTCAAAGGT-TTTTGTTGACAGATAACTCTCCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
* * * * *
7248828 CGGAGCTGAGTGTAATCGAACTCGGGGGTCGTTGGCAGATAACCATTCTCGACTTAAGTTATGCT
66 CGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
* *
7248893 GCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCGAA
131 GCAAATGACGTGCC-TTGGAGTTGAGCGTAGTCGAA
* ** * * * * * *
7248928 CTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATG-CCT
1 CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
* * * * ** * * *
7248992 TGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTGGACTTAAGTTA
66 CGAAGCTGAGTGTAATCGAACTCGGGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTA
7249057 TGCTGCAAATGACGTGCCTTGGAGTTGAGCGTAGTCGAA
127 TGCTGCAAATGACGTGCCTTGGAGTTGAGCGTAGTCGAA
*
7249096 CTCAAAGGTCTTTTGGTCACAGATAACCCTTATAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
7249161 CGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
66 CGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
*
7249226 GCAAATGACGTGCCTTGGAGTTGAGCGTAGTCAAA
131 GCAAATGACGTGCCTTGGAGTTGAGCGTAGTCGAA
* * *
7249261 CTCAAAGGTCTTTTGGTCACAGATATCCCTTCTAGACTTAAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
7249326 CGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
66 CGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
7249391 GCAAATGACGTGCCTTGGAGTTGAGCGTAGTCGAA
131 GCAAATGACGTGCCTTGGAGTTGAGCGTAGTCGAA
*
7249426 CTCAAAGGTCTTTTGGTCACAAATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
*
7249491 CGAAGCTGAGTGTAATCGAACTCAGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
66 CGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
7249556 GCAAATGACGTGCCTTGGAGTTGAGCGTAGTCGAA
131 GCAAATGACGTGCCTTGGAGTTGAGCGTAGTCGAA
*
7249591 CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTATCCTTGAGTTATGCTGTAAATGATGTGCCCT
1 CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
7249656 CGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
66 CGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
7249721 GCAAAT
131 GCAAAT
7249727 AGTTTGTTTA
Statistics
Matches: 740, Mismatches: 52, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
164 37 0.05
165 560 0.76
167 3 0.00
168 113 0.15
169 27 0.04
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (165 bp):
CTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCT
CGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCT
GCAAATGACGTGCCTTGGAGTTGAGCGTAGTCGAA
Found at i:7253141 original size:19 final size:19
Alignment explanation
Indices: 7253117--7253162 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7253107 AGTTAATGTG
* *
7253117 AATGCAAAGAAACTAACAA
1 AATGCAAAGAAAATAAAAA
7253136 AATGCAAAGAAAATAAAAA
1 AATGCAAAGAAAATAAAAA
7253155 AATGCAAA
1 AATGCAAA
7253163 ATGTCTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.67, C:0.11, G:0.11, T:0.11
Consensus pattern (19 bp):
AATGCAAAGAAAATAAAAA
Found at i:7253798 original size:17 final size:17
Alignment explanation
Indices: 7253772--7253804 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7253762 TGCAAACGAT
*
7253772 GAACACAAAATAAAAGA
1 GAACAAAAAATAAAAGA
7253789 GAACAAAAAATAAAAG
1 GAACAAAAAATAAAAG
7253805 GGTTAGTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.09, G:0.12, T:0.06
Consensus pattern (17 bp):
GAACAAAAAATAAAAGA
Found at i:7256404 original size:30 final size:30
Alignment explanation
Indices: 7256335--7256405 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
7256325 AAAAAATTTC
* *
7256335 AAAACTATAT-AGTTTTCAAAATGTTTTAA
1 AAAACTATATAAGTTTTAAAAACGTTTTAA
* *
7256364 AAATATTATATAAGTTTTAAAAAACGTTTT-T
1 AAA-ACTATATAAGTTTT-AAAAACGTTTTAA
7256395 AAAACTATATA
1 AAAACTATATA
7256406 TTATATAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
29 3 0.09
30 13 0.38
31 9 0.26
32 9 0.26
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.41
Consensus pattern (30 bp):
AAAACTATATAAGTTTTAAAAACGTTTTAA
Found at i:7256410 original size:37 final size:37
Alignment explanation
Indices: 7256340--7256599 Score: 240
Period size: 37 Copynumber: 7.2 Consensus size: 37
7256330 ATTTCAAAAC
7256340 TATAT-AGTTTTC-AAAATG-TTTT-AAA--A-ATAT
1 TATATAAGTTTTCAAAAATGTTTTTAAAACTATATAT
* *
7256370 TATATAAGTTTTAAAAAACGTTTTTAAAACTATATAT
1 TATATAAGTTTTCAAAAATGTTTTTAAAACTATATAT
* *
7256407 TATATAATTTATTCGAAAATGTTTTTAAAACTATATAT
1 TATATAAGTT-TTCAAAAATGTTTTTAAAACTATATAT
* * *
7256445 TATATAAGTTTT-TAAAATGATTTTAAAACTATATGT
1 TATATAAGTTTTCAAAAATGTTTTTAAAACTATATAT
* * *
7256481 TATATATA-TTTTCTAAAATGTTTTAAAAACTATATGT
1 TATATA-AGTTTTCAAAAATGTTTTTAAAACTATATAT
* *
7256518 TATAT-AGTTTTCAAAAATATTTTAAAAAACTATATAT
1 TATATAAGTTTTCAAAAATGTTTT-TAAAACTATATAT
*
7256555 TACCCAT-A-TTTTC-AAAATGCTTTTTTAAAAACTATATAT
1 TA--TATAAGTTTTCAAAAATG--TTTTT-AAAACTATATAT
7256594 TATATA
1 TATATA
7256600 TATATATATT
Statistics
Matches: 193, Mismatches: 19, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
30 5 0.03
31 6 0.03
32 5 0.03
33 4 0.02
34 3 0.02
35 1 0.01
36 46 0.24
37 64 0.33
38 38 0.20
39 21 0.11
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (37 bp):
TATATAAGTTTTCAAAAATGTTTTTAAAACTATATAT
Found at i:7257800 original size:64 final size:63
Alignment explanation
Indices: 7257715--7257875 Score: 191
Period size: 64 Copynumber: 2.5 Consensus size: 63
7257705 TTGTTTAAGG
* * * * *
7257715 TGCATCGATGCACATGCAGTGCATCGATGTAT-GAATTTAAATAGAAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCAA-TTAAATA-AAAACATCGAATAGGATTTA
* *
7257779 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATACAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCAT-CCAATTAAATAAAAACATCGAATAGGATTTA
*
7257843 TGCATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 TGCATCGATGCATAAG-G-AGTGCATCGATGCAT
7257876 ACCTTCATTA
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.01
64 61 0.72
65 22 0.26
66 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (63 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCATCCAATTAAATAAAAACATCGAATAGGATTTA
Found at i:7257875 original size:65 final size:65
Alignment explanation
Indices: 7257751--7257875 Score: 200
Period size: 64 Copynumber: 1.9 Consensus size: 65
7257741 ATGTATGAAT
7257751 TTAAATAGAAAACATCGAATAGGATTTATGCATCGATGCATAAGGAGTGCATCGATGCATCCCCA
1 TTAAATAGAAAACATCGAATAGGATTTATGCATCGATGCATAAGGAGTGCATCGATGCATCCCCA
* *
7257816 TTAAATA-CAAACATCGAATAGGATTTATGCATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 TTAAATAGAAAACATCGAATAGGATTTATGCATCGATGCATAAG-G-AGTGCATCGATGCAT
7257876 ACCTTCATTA
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
63 1 0.02
64 33 0.59
65 22 0.39
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (65 bp):
TTAAATAGAAAACATCGAATAGGATTTATGCATCGATGCATAAGGAGTGCATCGATGCATCCCCA
Found at i:7258390 original size:18 final size:18
Alignment explanation
Indices: 7258367--7258401 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7258357 CTAGGAGATT
7258367 TGAACATA-AATGATAAGA
1 TGAACATATAA-GATAAGA
7258385 TGAACATATAAGATAAG
1 TGAACATATAAGATAAG
7258402 CTAGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (18 bp):
TGAACATATAAGATAAGA
Found at i:7258738 original size:2 final size:2
Alignment explanation
Indices: 7258731--7258770 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7258721 GAACATGTGA
7258731 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7258771 GTCTAAGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7259507 original size:147 final size:148
Alignment explanation
Indices: 7259317--7259629 Score: 533
Period size: 147 Copynumber: 2.1 Consensus size: 148
7259307 GAGTCGAGGG
* **
7259317 TCTACGCGGTCCTTCGGGATATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACAT
1 TCTACGCGGTCCTTCGGGA-ATATATATATTCTGTGGAACATGTGTGAAGTCTGGAAAGACACAT
7259382 A-TATGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
65 ACT-TGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
7259446 ATATGGCACTACGGTGCAAT
129 ATATGGCACTACGGTGCAAT
*
7259466 TCTACGCGGTCCTTCGGG-ATATATATATTCTGTGGAACATGTGTGAAGTCTTGAAAGACACATA
1 TCTACGCGGTCCTTCGGGAATATATATATTCTGTGGAACATGTGTGAAGTCTGGAAAGACACATA
*
7259530 CTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATTATTAT
66 CTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTAT
7259595 ATGGCACTACGGTGCAAT
131 ATGGCACTACGGTGCAAT
7259613 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
7259630 TGAAATTATA
Statistics
Matches: 157, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
146 1 0.01
147 137 0.87
148 1 0.01
149 18 0.11
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (148 bp):
TCTACGCGGTCCTTCGGGAATATATATATTCTGTGGAACATGTGTGAAGTCTGGAAAGACACATA
CTTGATCCCTAGCATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATTAT
ATGGCACTACGGTGCAAT
Found at i:7260513 original size:19 final size:19
Alignment explanation
Indices: 7260475--7260513 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7260465 TTGTGGATTT
*
7260475 ACATCAATTTTTTTAGAAA
1 ACATCAATTTTATTAGAAA
7260494 ACATCTAATTTTATTA-AAA
1 ACATC-AATTTTATTAGAAA
7260513 A
1 A
7260514 TAAAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (19 bp):
ACATCAATTTTATTAGAAA
Found at i:7262484 original size:2 final size:2
Alignment explanation
Indices: 7262477--7262520 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7262467 ATGGAATGTT
7262477 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7262519 TA
1 TA
7262521 AAACTTAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7269537 original size:23 final size:24
Alignment explanation
Indices: 7269510--7269555 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
7269500 ATTTTATGTT
*
7269510 AGGGAT-GAATTTCTAAAATTTTA
1 AGGGATCGAATTTATAAAATTTTA
7269533 AGGGATGCGAATTTATAAAATTT
1 AGGGAT-CGAATTTATAAAATTT
7269556 CAGGGGACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
25 14 0.70
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (24 bp):
AGGGATCGAATTTATAAAATTTTA
Found at i:7269568 original size:24 final size:25
Alignment explanation
Indices: 7269516--7269568 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
7269506 TGTTAGGGAT
* * *
7269516 GAATTTCTAAAATTTTAAGGGATGC
1 GAATTTATAAAATTTCAAGGGACGC
*
7269541 GAATTTATAAAATTTCAGGGGACG-
1 GAATTTATAAAATTTCAAGGGACGC
7269565 GAAT
1 GAAT
7269569 AAATCATTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (25 bp):
GAATTTATAAAATTTCAAGGGACGC
Found at i:7270242 original size:26 final size:26
Alignment explanation
Indices: 7270194--7270248 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
7270184 CAAGTCATAG
*
7270194 CATAATCCGAATCAGTCAATAATAAT
1 CATAATCCGAATCAATCAATAATAAT
* * * *
7270220 CATAGTCCGATTCAATCATTAATATT
1 CATAATCCGAATCAATCAATAATAAT
7270246 CAT
1 CAT
7270249 GAACCAAGCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (26 bp):
CATAATCCGAATCAATCAATAATAAT
Found at i:7275952 original size:26 final size:27
Alignment explanation
Indices: 7275905--7275955 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
7275895 GTCCCTGTAA
*
7275905 TCATATCCATATACTACAACTGAATGT
1 TCATATCCATACACTACAACTGAATGT
7275932 TCATATCCAT-CACTACAACTGAAT
1 TCATATCCATACACTACAACTGAAT
7275956 TTCTACCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (27 bp):
TCATATCCATACACTACAACTGAATGT
Found at i:7278834 original size:2 final size:2
Alignment explanation
Indices: 7278822--7278853 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
7278812 AATTTTAAAT
7278822 TA TA CTA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA T
7278854 CTTTGTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7283309 original size:3 final size:3
Alignment explanation
Indices: 7283301--7283373 Score: 60
Period size: 3 Copynumber: 24.3 Consensus size: 3
7283291 AAGAGGGATG
* * * *
7283301 AGA AGA AGA AGA ATA AGA AGGA A-A AGA ACA AGA ACA AGA AGG AGA
1 AGA AGA AGA AGA AGA AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA
* *
7283346 AGA AGA AAA AGAA AGA TG- AGA AGA AGA A
1 AGA AGA AGA AG-A AGA AGA AGA AGA AGA A
7283374 TGGAGAGTTA
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
2 3 0.06
3 45 0.83
4 6 0.11
ACGTcount: A:0.66, C:0.03, G:0.29, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:7283333 original size:21 final size:21
Alignment explanation
Indices: 7283303--7283349 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7283293 GAGGGATGAG
* *
7283303 AAGAAGAAGAATAAGAAGGAA
1 AAGAACAAGAACAAGAAGGAA
*
7283324 AAGAACAAGAACAAGAAGGAG
1 AAGAACAAGAACAAGAAGGAA
7283345 AAGAA
1 AAGAA
7283350 GAAAAAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.66, C:0.04, G:0.28, T:0.02
Consensus pattern (21 bp):
AAGAACAAGAACAAGAAGGAA
Found at i:7288022 original size:19 final size:20
Alignment explanation
Indices: 7287998--7288038 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
7287988 ATTTGTTATT
*
7287998 AAAAATGTTTTC-AAAAACA
1 AAAAATATTTTCTAAAAACA
*
7288017 AAAAATATTTTCTAAAATCA
1 AAAAATATTTTCTAAAAACA
7288037 AA
1 AA
7288039 TGTACCTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAAATATTTTCTAAAAACA
Found at i:7304761 original size:2 final size:2
Alignment explanation
Indices: 7304754--7304782 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7304744 AACTAACACA
7304754 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7304783 ATTCAAAGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7305997 original size:3 final size:3
Alignment explanation
Indices: 7305989--7306071 Score: 141
Period size: 3 Copynumber: 27.7 Consensus size: 3
7305979 TTTTTATCCA
*
7305989 TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7306036 TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TA
7306072 ATTTATATTA
Statistics
Matches: 76, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
2 2 0.03
3 71 0.93
4 3 0.04
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7318205 original size:17 final size:16
Alignment explanation
Indices: 7318185--7318226 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
7318175 TTATGCTTGA
7318185 AGAAAGAAAAAAAAAAT
1 AGAAA-AAAAAAAAAAT
*
7318202 AGAAAAAATAGAAAAAT
1 AGAAAAAA-AAAAAAAT
7318219 -GAAAAAAA
1 AGAAAAAAA
7318227 GAGAAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 1 0.04
16 10 0.43
17 12 0.52
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (16 bp):
AGAAAAAAAAAAAAAT
Found at i:7318215 original size:26 final size:27
Alignment explanation
Indices: 7318184--7318242 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
7318174 ATTATGCTTG
*
7318184 AAGAAAGAA-AAAAAAAATAGAA-AAA
1 AAGAAAGAATAAAAAAAAGAGAAGAAA
*
7318209 ATAGAAA-AATGAAAAAAAGAGAAGAAA
1 A-AGAAAGAATAAAAAAAAGAGAAGAAA
7318236 AAGAAAG
1 AAGAAAG
7318243 GGGGTCAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
25 3 0.11
26 21 0.75
27 4 0.14
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (27 bp):
AAGAAAGAATAAAAAAAAGAGAAGAAA
Found at i:7319859 original size:52 final size:52
Alignment explanation
Indices: 7319220--7319838 Score: 1059
Period size: 52 Copynumber: 11.9 Consensus size: 52
7319210 ATGGAAAAGC
*
7319220 ATCAGAACATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
*
7319272 ATCATAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
*
7319324 ATCATAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-G
*
7319377 A-CAGAACATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
*
7319428 ATCATAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-G
7319481 A-CAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
*
7319532 ATCATAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
*
7319584 ATCATAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-G
7319637 A-CAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-G
*
7319689 A-CAGAACATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
*
7319740 ATCATAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGG
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-G
* *
7319793 A-CAGAACATAGCATTTTCTGGAAGTGTTCTTTGAGATATCTGATCT
1 ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
7319839 AATTGGATAG
Statistics
Matches: 545, Mismatches: 15, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
51 6 0.01
52 531 0.97
53 8 0.01
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (52 bp):
ATCAGAACATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTG
Done.