Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8415618
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 40
Found at i:7320696 original size:114 final size:114
Alignment explanation
Indices: 7320496--7321130 Score: 1216
Period size: 114 Copynumber: 5.5 Consensus size: 114
7320486 TGCAAGGTAG
7320496 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
*
7320561 AACCTGTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGAA
66 AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGAA
7320610 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
7320675 AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGAA
66 AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGAA
7320724 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
7320789 AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGAA
66 AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGAA
7320838 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
7320903 AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGAA
66 AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGAA
7320952 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
7321017 AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGGAA
66 AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGA-GAA
7321067 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACT
1 -AGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACT
7321131 CATCAAGAGC
Statistics
Matches: 515, Mismatches: 1, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
114 452 0.88
115 3 0.01
116 18 0.03
118 1 0.00
119 41 0.08
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (114 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
AACCTTTTGCTTGAATTCATCACTTGATGGATCATTCTTTTCCAGAGAA
Found at i:7321386 original size:3 final size:3
Alignment explanation
Indices: 7321378--7321459 Score: 148
Period size: 3 Copynumber: 27.7 Consensus size: 3
7321368 TTTTTATCCA
*
7321378 TAT TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7321426 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7321460 ATTTATATTA
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 74 0.97
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7325035 original size:386 final size:385
Alignment explanation
Indices: 7324322--7325093 Score: 1418
Period size: 386 Copynumber: 2.0 Consensus size: 385
7324312 ACGTCTTCTT
7324322 GATGAAATGAACTTCCTATTATGGAACCAACAAGTGTTGCTTACAGTTTGGAGCCACCGTCTTAA
1 GATGAAATGAACTTCCTATTATGGAACCAACAAGTGTTGCTTACAGTTTGGAGCCACCGTCTTAA
* *
7324387 GTGAATGTTGATTGAGACGATACTGCTGCCACCGGAAACCGTTGTTGGTGATGGAGGTGTTGTGA
66 GTGAATGTTGATTGAGACGATAATGCTGCCACCGGAAACCGTTGTTGGTGATGGAGGTGTTATGA
7324452 TTTCGAATGAGGAATTCTTGGCACAAGATAGTGCTTTAGTTTCTTGGTTGTAGTCAATGGTCACT
131 TTTCGAATGAGGAATTCTTGGCACAAGATAGTGCTTTAGTTTCTTGGTTGTAGTCAATGGTCACT
7324517 ACCCACCTGCTTCCTCAGTTCGTTGGGGCTGAAACAGCCACGGATGTGTGGAATAAAATGCTTTA
196 ACCCACCTGCTTCCTCAGTTCGTTGGGGCTGAAACAGCCACGGATGTGTGGAATAAAATGCTTTA
7324582 GTTCTTTACTTGTAATACCCCAAACCCCAGGTTAGTAGTTCGAGTTAACCCGAAATCTTTAATTC
261 GTTCTTTACTTGTAATACCCCAAACCCCAGGTTAGTAGTTCGAGTTAACCCGAAATCTTTAATTC
* * *
7324647 GAGCCCAAAAAGGCCCATTAGATTAGTTGGATAAAACTAAGTTAGATTTGGACTTGGTTTG
326 GAGCCCAAAAA-GACCATTAGATTAGTTGGATAAAAATAAGTAAGATTTGGACTTGGTTTG
*
7324708 GATGAAATGAACTTCCTATTATGGAAGCAACAAGTGTTGCTTACAGTTTGGAGCCACCGTCTTAA
1 GATGAAATGAACTTCCTATTATGGAACCAACAAGTGTTGCTTACAGTTTGGAGCCACCGTCTTAA
* * *
7324773 GTGAATGTTGATTGAGATGATAATGCTGCCACCGGAAACGGTTGTTGGTGATGGAGGTGTTATGT
66 GTGAATGTTGATTGAGACGATAATGCTGCCACCGGAAACCGTTGTTGGTGATGGAGGTGTTATGA
7324838 TTTCGAATGAGGAATTCTTGGCACAAGATAGTGCTTTAGTTTCTTGGTTGTAGTCAATGGTCACT
131 TTTCGAATGAGGAATTCTTGGCACAAGATAGTGCTTTAGTTTCTTGGTTGTAGTCAATGGTCACT
7324903 ACCCACCTGCTTCCTCAGTTCGTTGGGGCTGAAACAGCCACGGATGTGTGGAATAAAATGCTTTA
196 ACCCACCTGCTTCCTCAGTTCGTTGGGGCTGAAACAGCCACGGATGTGTGGAATAAAATGCTTTA
* * * *
7324968 GTTCTTTACTTGTAATACCTCAAACCCCATGTTAGTAGTTCGGGTTGACCCGAAATCTTTAATTC
261 GTTCTTTACTTGTAATACCCCAAACCCCAGGTTAGTAGTTCGAGTTAACCCGAAATCTTTAATTC
7325033 GAGCCCAAAAAGACCATTAGATTAGTTGGATAAAAATAAGTAAGATTTGGACTTGGTTTG
326 GAGCCCAAAAAGACCATTAGATTAGTTGGATAAAAATAAGTAAGATTTGGACTTGGTTTG
7325093 G
1 G
7325094 CCTAAGCGTT
Statistics
Matches: 373, Mismatches: 13, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
385 47 0.13
386 326 0.87
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (385 bp):
GATGAAATGAACTTCCTATTATGGAACCAACAAGTGTTGCTTACAGTTTGGAGCCACCGTCTTAA
GTGAATGTTGATTGAGACGATAATGCTGCCACCGGAAACCGTTGTTGGTGATGGAGGTGTTATGA
TTTCGAATGAGGAATTCTTGGCACAAGATAGTGCTTTAGTTTCTTGGTTGTAGTCAATGGTCACT
ACCCACCTGCTTCCTCAGTTCGTTGGGGCTGAAACAGCCACGGATGTGTGGAATAAAATGCTTTA
GTTCTTTACTTGTAATACCCCAAACCCCAGGTTAGTAGTTCGAGTTAACCCGAAATCTTTAATTC
GAGCCCAAAAAGACCATTAGATTAGTTGGATAAAAATAAGTAAGATTTGGACTTGGTTTG
Found at i:7329389 original size:16 final size:16
Alignment explanation
Indices: 7329368--7329400 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7329358 TACTATTCAT
*
7329368 GTGAATAGTGAATTTC
1 GTGAATAGTGAAATTC
7329384 GTGAATAGTGAAATTC
1 GTGAATAGTGAAATTC
7329400 G
1 G
7329401 GTCGGCGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.33
Consensus pattern (16 bp):
GTGAATAGTGAAATTC
Found at i:7335706 original size:28 final size:27
Alignment explanation
Indices: 7335671--7335733 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
7335661 TAATTCAAAA
7335671 ATAATATAA-AAAATAATT-ATTATAATT
1 ATAATATAATAAAAT-ATTCA-TATAATT
7335698 ATAATTATAATAAAATATTCATATAATT
1 ATAA-TATAATAAAATATTCATATAATT
7335726 ATAA-ATAA
1 ATAATATAA
7335734 ATGATAAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
28 19 0.58
29 6 0.18
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (27 bp):
ATAATATAATAAAATATTCATATAATT
Found at i:7336290 original size:68 final size:64
Alignment explanation
Indices: 7336212--7336371 Score: 153
Period size: 69 Copynumber: 2.4 Consensus size: 64
7336202 TACAATCAGA
*
7336212 TATCTTTTAATATTCAAATTAAAACATATAATAATATA-TTTTAATTTAAAATATTCAAAAGTAT
1 TATCGTTTAATATTCAAATTAAAA-AT-TAATAA-ATACTTTTAATTTAAAATATTCAAAA--A-
7336276 ATAAT
60 ATAAT
* * * * *
7336281 TATC-TTTAATATTAAAAGTTAAATAGTTAATAAATACCTTTTAATTTGATATATTCAAAAAGTA
1 TATCGTTTAATATTCAAA-TTAAA-AATTAATAAATA-CTTTTAATTTAAAATATTCAAAAAATA
7336345 AT
63 AT
*
7336347 TATCGTACTAATATTCAAATTAAAA
1 TATCGT-TTAATATTCAAATTAAAA
7336372 TATCTTTTTA
Statistics
Matches: 78, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
66 9 0.12
67 10 0.13
68 28 0.36
69 30 0.38
70 1 0.01
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (64 bp):
TATCGTTTAATATTCAAATTAAAAATTAATAAATACTTTTAATTTAAAATATTCAAAAAATAAT
Found at i:7337957 original size:12 final size:12
Alignment explanation
Indices: 7337940--7337966 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7337930 TTCTCTATAA
7337940 CTTCGCTTTTCT
1 CTTCGCTTTTCT
7337952 CTTCGCTTTTCT
1 CTTCGCTTTTCT
7337964 CTT
1 CTT
7337967 TTACCAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.33, G:0.07, T:0.59
Consensus pattern (12 bp):
CTTCGCTTTTCT
Found at i:7345809 original size:14 final size:14
Alignment explanation
Indices: 7345790--7345840 Score: 77
Period size: 14 Copynumber: 3.6 Consensus size: 14
7345780 TTATAATATT
7345790 ACCATAAACTCTAA
1 ACCATAAACTCTAA
7345804 ACCATAAACTCTAA
1 ACCATAAACTCTAA
7345818 ACTC-TAAACTCTAA
1 AC-CATAAACTCTAA
*
7345832 ACCTTAAAC
1 ACCATAAAC
7345841 CTTAAAGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.03
14 33 0.94
15 1 0.03
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (14 bp):
ACCATAAACTCTAA
Found at i:7345811 original size:7 final size:7
Alignment explanation
Indices: 7345794--7345833 Score: 64
Period size: 7 Copynumber: 5.7 Consensus size: 7
7345784 AATATTACCA
7345794 TAAACTC
1 TAAACTC
7345801 TAAAC-C
1 TAAACTC
7345807 ATAAACTC
1 -TAAACTC
7345815 TAAACTC
1 TAAACTC
7345822 TAAACTC
1 TAAACTC
7345829 TAAAC
1 TAAAC
7345834 CTTAAACCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 1 0.03
7 29 0.94
8 1 0.03
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (7 bp):
TAAACTC
Found at i:7345966 original size:2 final size:2
Alignment explanation
Indices: 7345959--7345995 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7345949 GGATCCTAAC
7345959 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7345996 TGAAGGCACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7347742 original size:2 final size:2
Alignment explanation
Indices: 7347735--7347774 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7347725 GTTTAAAATC
*
7347735 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7347775 TATGTTGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:7347753 original size:33 final size:33
Alignment explanation
Indices: 7347683--7347755 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
7347673 CTAATATTTC
* * * *
7347683 AATA-AATAAGTTTACATTCATATATTTGTAAT
1 AATATAATAAGTTTAAAATCATATATATATAAT
7347715 AATATAATAAGTTTAAAATCATATATATATATAT
1 AATATAATAAGTTTAAAATCATATATATATA-AT
7347749 ATATATA
1 A-ATATA
7347756 TATATTTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 4 0.12
33 22 0.65
34 3 0.09
35 5 0.15
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (33 bp):
AATATAATAAGTTTAAAATCATATATATATAAT
Found at i:7347987 original size:17 final size:17
Alignment explanation
Indices: 7347967--7348000 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7347957 TACTTATGCT
7347967 TATATAGGGATGTGCAC
1 TATATAGGGATGTGCAC
7347984 TATATAGGGATGTGCAC
1 TATATAGGGATGTGCAC
7348001 GAGACTAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (17 bp):
TATATAGGGATGTGCAC
Found at i:7350071 original size:18 final size:19
Alignment explanation
Indices: 7350048--7350090 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
7350038 TTTTTTGTAC
7350048 CGATACT-C-ATAGGGGTAT
1 CGATACTACAATA-GGGTAT
7350066 CGATACTACAGATAGGGTAT
1 CGATACTACA-ATAGGGTAT
7350086 CGATA
1 CGATA
7350091 TTACCCACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 7 0.32
19 1 0.05
20 11 0.50
21 3 0.14
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (19 bp):
CGATACTACAATAGGGTAT
Found at i:7351167 original size:2 final size:2
Alignment explanation
Indices: 7351160--7351222 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
7351150 TTTTTAAAAC
7351160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7351202 AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
7351223 CCCCCATCCG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7351448 original size:24 final size:24
Alignment explanation
Indices: 7351431--7351552 Score: 140
Period size: 24 Copynumber: 5.1 Consensus size: 24
7351421 ATCAAAACAT
* *
7351431 AATCCAGGTCAAGTATCATATCAA
1 AATCCAGGTCAAGTATCAGATCAG
*
7351455 AATCCAGGTCAAGTATTC-GATTAG
1 AATCCAGGTCAAGTA-TCAGATCAG
* *
7351479 AATCCAAGTCAAGTATCAGATCAT
1 AATCCAGGTCAAGTATCAGATCAG
*
7351503 AATCCATGTC-AGATATCAGATCAG
1 AATCCAGGTCAAG-TATCAGATCAG
* *
7351527 AATCCATGTCAAGTATCAAATCAG
1 AATCCAGGTCAAGTATCAGATCAG
7351551 AA
1 AA
7351553 ATCAAATTGA
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
23 4 0.05
24 77 0.91
25 4 0.05
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (24 bp):
AATCCAGGTCAAGTATCAGATCAG
Found at i:7354013 original size:18 final size:18
Alignment explanation
Indices: 7353992--7354027 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7353982 CGCCGGTCAA
7353992 CGGGTAAACGGGTCGGGT
1 CGGGTAAACGGGTCGGGT
7354010 CGGGTAAACGGGTCGGGT
1 CGGGTAAACGGGTCGGGT
7354028 TATGATCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.50, T:0.17
Consensus pattern (18 bp):
CGGGTAAACGGGTCGGGT
Found at i:7355007 original size:22 final size:22
Alignment explanation
Indices: 7354955--7355000 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
7354945 TAATAGCCAT
7354955 AACAGTAACCGTAATAGCTAGA
1 AACAGTAACCGTAATAGCTAGA
7354977 AACAGTAACCGTAATAGCTAGA
1 AACAGTAACCGTAATAGCTAGA
7354999 AA
1 AA
7355001 TATTAACAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (22 bp):
AACAGTAACCGTAATAGCTAGA
Found at i:7356466 original size:31 final size:31
Alignment explanation
Indices: 7356425--7356486 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
7356415 TATTTTCACG
* * *
7356425 TCAGAAGATTGAAATTTTTATTTTTCCTTTT
1 TCAGAAGATTGAAATTGTGATTTGTCCTTTT
* *
7356456 TCAGAGGATTGAAGTTGTGATTTGTCCTTTT
1 TCAGAAGATTGAAATTGTGATTTGTCCTTTT
7356487 ATTTCTTTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.23, C:0.10, G:0.18, T:0.50
Consensus pattern (31 bp):
TCAGAAGATTGAAATTGTGATTTGTCCTTTT
Found at i:7359938 original size:74 final size:74
Alignment explanation
Indices: 7359855--7359999 Score: 245
Period size: 74 Copynumber: 2.0 Consensus size: 74
7359845 TGCCCTCAAA
* *
7359855 TTTTTTTATCATTAAAGAATAATGGGGTAATTACCTATTTAAGCCTTTAAATTTTAATTTAGTTT
1 TTTTTTTATCATTAAAGAATAATAGGATAATTACCTATTTAAGCCTTTAAATTTTAATTTAGTTT
7359920 GATTTTGCC
66 GATTTTGCC
* * *
7359929 TTTTTTTATCATTAAATAATAATAGGATAATTACCTATTTAGGCCTTTAAATTTTAATTTATTTT
1 TTTTTTTATCATTAAAGAATAATAGGATAATTACCTATTTAAGCCTTTAAATTTTAATTTAGTTT
7359994 GATTTT
66 GATTTT
7360000 ATCTACTCAT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (74 bp):
TTTTTTTATCATTAAAGAATAATAGGATAATTACCTATTTAAGCCTTTAAATTTTAATTTAGTTT
GATTTTGCC
Found at i:7361734 original size:3 final size:3
Alignment explanation
Indices: 7361726--7361753 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7361716 TATATTTGTT
7361726 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7361754 ATTTAAGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7362838 original size:16 final size:16
Alignment explanation
Indices: 7362814--7362845 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7362804 ATTCCTTCCC
7362814 TTATCAGTGAAATCAA
1 TTATCAGTGAAATCAA
*
7362830 TTATTAGTGAAATCAA
1 TTATCAGTGAAATCAA
7362846 GTTGTTATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34
Consensus pattern (16 bp):
TTATCAGTGAAATCAA
Found at i:7363464 original size:13 final size:13
Alignment explanation
Indices: 7363446--7363470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7363436 TATCAACAAG
7363446 GTTACTTTTCTTA
1 GTTACTTTTCTTA
7363459 GTTACTTTTCTT
1 GTTACTTTTCTT
7363471 TCTGATTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.08, T:0.64
Consensus pattern (13 bp):
GTTACTTTTCTTA
Found at i:7372657 original size:2 final size:2
Alignment explanation
Indices: 7372650--7372685 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7372640 GCTTCACACC
7372650 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7372686 TACGAGGGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7377168 original size:201 final size:198
Alignment explanation
Indices: 7376699--7378681 Score: 971
Period size: 200 Copynumber: 10.0 Consensus size: 198
7376689 ACAAATTTAA
* * * * *
7376699 AAAGTGTCGACACATTATGT-TGACCTATTTTCT-ATTTACACCGGTAAATTTCAACCGGTTACA
1 AAAGTGTCGATACTTTATGTAT-ACCTATTTTCTCA-TAAAACCGGTAAATTTAAACCGGTTACA
* *
7376762 TTGTAAATTGACCTATTACATTATAATTTCTGGTCTCTATGTATTTAGGGTCGATACTTTTTATA
64 TTGTAAAGTGACCTATTACATTATAATTT-TGGTCTCGATGTATTTAGGGTCGATAC-TTTTATA
* * * * *
7376827 AATGTATCGACACTTTATGCGTGGACATCGTTT-GGACTTCATTATGAACATAAAGTATCGACAC
127 AATGTATCGACACTTTATGCGTGCACATAGTTTGGGAATTCATTATGGACAAAAAGTATCGACAC
7376891 AAATGCAA-
192 AAAT--AAT
* * * * *
7376899 AAAGTATCGATACATTATGTAGACCTATTTACTCATAAAACCGGTAAATTTAAACCGGTTATATT
1 AAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACATT
* *
7376964 GTAAAGTGACCTATTACATTATAAATTTTGGTCTCGATGTATTTGGGGTCGGTACTTTTAATAAA
66 GTAAAGTGACCTATTACATTAT-AATTTTGGTCTCGATGTATTTAGGGTCGATACTTTT-ATAAA
*
7377029 TGTATCGACACTTTATGCGTGCACATAGTTTGGGAATTCATTATGGATAAAAAGTATCGACACAA
129 TGTATCGACACTTTATGCGTGCACATAGTTTGGGAATTCATTATGGACAAAAAGTATCGACACAA
7377094 ATAAAT
194 AT-AAT
** * *
7377100 AAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAATTGGTAAATTAAAACTGGTTACATT
1 AAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACATT
* * * ** *
7377165 GTAAAGTGACCTATTACATTAT-ATCTATGTGTTTCGATGTTTTTAGTATCGACACTTGTTATAA
66 GTAAAGTGACCTATTACATTATAAT-TTTG-GTCTCGATGTATTTAGGGTCGATACTT-TTATAA
* * * * * *
7377229 ATGTATCGACACTTTGT-CGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATTGACAC
128 ATGTATCGACACTTTATGCGTGCACATAGTTTGG-GAATTCATTATGGACAAAAAGTATCGACAC
*** *
7377293 TTGTTAT
192 AAATAAT
** * * ** **
7377300 ATTTGTGTCGATACTTTATGTATACCTGTTTTCTCAT-AAACTGGTGTATTTAGGCCGGTTACAT
1 A-AAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACAT
* ** * * * * ** *
7377364 TGTTATTTTACCTATTACTTTAT-ATCTATGTGAT-TCGATGTTTTTAGTATCGACACTTGTTAT
65 TGTAAAGTGACCTATTACATTATAAT-T-T-TGGTCTCGATGTATTTAGGGTCGATACTT-TTAT
* ** * * * * *
7377427 AAATGTATCGACACTTTGT-CGTGCATTTGGTTTGGAAAATACATTATGGATAAAAAGTATTGAC
126 AAATGTATCGACACTTTATGCGTGCACATAGTTTGG-GAATTCATTATGGACAAAAAGTATCGAC
***
7377491 ACTTGTTTAAT
190 AC--AAATAAT
** * * ** ** **
7377502 -TTGTGTCGATACTTTATGTATACATGTTTTCTCAT-AAACCAATGTATTTAGGCCGGTTACATT
1 AAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACATT
* ** * * * * ** * *
7377565 GTTATTTTACCTATTACATTAT-ATCTATGTGTTTCGATGTTTTTAGTATTGACACTTGTTATAA
66 GTAAAGTGACCTATTACATTATAAT-TTTG-GTCTCGATGTATTTAGGGTCGATACTT-TTATAA
* * * * *
7377629 ATGTATTGACACTTTGT-CGTGCAC-TTGATTTGGAAAATACATTATGGACAAAAAGTATCGACA
128 ATGTATCGACACTTTATGCGTGCACATAG-TTTGG-GAATTCATTATGGACAAAAAGTATCGACA
*** **
7377692 CTTGTTGT
191 CAAATAAT
** * * ** ** *
7377700 ATTTGTGTCGATACTTTATGTTTACCTGTTTTCTCAT-AAACCGGTGTATTTAGGCCGATTACAT
1 A-AAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACAT
* ** * * *
7377764 TGTTATTTTACCTATTACATTAT-A------TCT--ATGTGTTT----T-GAT-GTTTT-T--A-
65 TGTAAAGTGACCTATTACATTATAATTTTGGTCTCGATGTATTTAGGGTCGATACTTTTATAAAT
* * ** *** * ** *
7377810 GTATCGACACTTTGTCGTGCACTTGGT--TTGGAAAATACATTATGGACAAAAAGTATCGACACT
130 GTATCGACACTTTAT-GCGTGC-ACATAGTTTGGGAATTCATTATGGACAAAAAGTATCGACAC-
***
7377873 TGTTGAAT
192 AAAT-AAT
** * * ** **
7377881 -TTGTGTCGATACTTTATGTATACATGTTTTCTCAT-AAACCGGTGTATTTAGGCCGGTTACATT
1 AAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACATT
* ** * * * ** *
7377944 GTTATTTTACCTATTACATTAT-ATCTATGTGAT-TCGATGTTTTTAGTATCGACACTTGTTATA
66 GTAAAGTGACCTATTACATTATAAT-T-T-TGGTCTCGATGTATTTAGGGTCGATACTT-TTATA
* ** * ** * *
7378007 AATGTATCGACACTTTGT-CGTGCATTTGGCTTTGAAAATACATTATGGACAAAAAATATCGACA
127 AATGTATCGACACTTTATGCGTGCACATAG-TTTGGGAATTCATTATGGACAAAAAGTATCGACA
*** *
7378071 CTTGTTGGAT
191 C-AAAT-AAT
** * *
7378081 -TTGTGTCGATACTTTATATATACCTATTTTCTCATAAAACCGATAAATTTAAACCGGTTACATT
1 AAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACATT
* * * *
7378145 GTAAAGTGACCTATTACATTATAATTATAGGTTTCGATGTATTT-GGGATCGACACATGTTATAA
66 GTAAAGTGACCTATTACATTATAATT-TTGGTCTCGATGTATTTAGGG-TCGATAC-TTTTATAA
* ** * * * *
7378209 ATGTATCGACA-TTTTTTTGTGCA-TTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACAC
128 ATGTATCGACACTTTATGCGTGCACATAGTTTGG-GAATTCATTATGGACAAAAAGTATCGACAC
*** *
7378272 TTGTTGGAT
192 -AAAT-AAT
** * * ** **
7378281 -TTGTGTCGATACTTTATGTATACTTGTTTTCTCAT-AAACCGGTGTATTTAGGCCGGTTACATT
1 AAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACATT
* ** * * * ** *
7378344 GTTATTTTACCTATTACATTAT-ATCTATGTGTTTCGATG-ATTTTAGTATCGACACTTGTTATA
66 GTAAAGTGACCTATTACATTATAAT-TTTG-GTCTCGATGTA-TTTAGGGTCGATACTT-TTATA
* * * * * *
7378407 AATGTATCGACACTTTGT-CGTGCACTTGGTTTGGAAAATACATTCTGGACAAAAAGTATCGACA
127 AATGTATCGACACTTTATGCGTGCACATAGTTTGG-GAATTCATTATGGACAAAAAGTATCGACA
*** **
7378471 CTTGTTGT
191 CAAATAAT
** * * * ** ** *
7378479 ATTTGTGTCGATACTTTATGTTTACTTGTTTTCTCAT-AAACCGGTGTATTTAGGCCGATTACAT
1 A-AAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACAT
* ** * * * * * ** *
7378543 TGTTATTTTA-CTATTACATTAT-ATCTATGTGTTTTGATGTTTTTAGTATCGACACTTGTTATA
65 TGTAAAGTGACCTATTACATTATAAT-TTTG-GTCTCGATGTATTTAGGGTCGATACTT-TTATA
* * * * * * * *
7378606 AATGTATCGACACTTT-TCTCGTGCACTTGGTTTGGAAATACATTATGAACAACATGTATCGACA
127 AATGTATCGACACTTTAT-GCGTGCACATAGTTTGGGAATTCATTATGGACAAAAAGTATCGACA
*
7378670 CGAATGAAT
191 CAAAT-AAT
7378679 AAA
1 AAA
7378682 ACAAATTCAT
Statistics
Matches: 1529, Mismatches: 183, Indels: 143
0.82 0.10 0.08
Matches are distributed among these distances:
179 127 0.08
180 6 0.00
181 3 0.00
182 1 0.00
183 3 0.00
184 2 0.00
185 2 0.00
186 1 0.00
187 1 0.00
188 1 0.00
189 7 0.00
190 7 0.00
192 2 0.00
193 1 0.00
194 2 0.00
195 2 0.00
196 2 0.00
197 2 0.00
198 14 0.01
199 192 0.13
200 842 0.55
201 298 0.19
202 11 0.01
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (198 bp):
AAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACATT
GTAAAGTGACCTATTACATTATAATTTTGGTCTCGATGTATTTAGGGTCGATACTTTTATAAATG
TATCGACACTTTATGCGTGCACATAGTTTGGGAATTCATTATGGACAAAAAGTATCGACACAAAT
AAT
Found at i:7377459 original size:200 final size:200
Alignment explanation
Indices: 7377024--7378670 Score: 1822
Period size: 200 Copynumber: 8.3 Consensus size: 200
7377014 GGTACTTTTA
* * * * * *
7377024 ATAAATGTATCGACACTTTATGCGTGCACATAGTTTGG-GAATTCATTATGGATAAAAAGTATCG
1 ATAAATGTATCGACACTTTGT-CGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCG
*** ** ** * ** ** *
7377088 ACAC-AAATAAATAAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAATTGGTAAATTAA
65 ACACTTGTTGTAT-TTGTGTCGATACTTTATGTATACCTGTTTTCTCAT-AAACCGGTGTATTTA
** * * ** *
7377152 AACTGGTTACATTGTAAAGTGACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGA
128 GGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGA
7377217 CACTTGTT
193 CACTTGTT
*
7377225 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATTGA
1 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
* *
7377290 CACTTGTTATATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACTGGTGTATTTAGGC
66 CACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGTGTATTTAGGC
* *
7377355 CGGTTACATTGTTATTTTACCTATTACTTTATATCTATGTGATTCGATGTTTTTAGTATCGACAC
131 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
7377420 TTGTT
196 TTGTT
* * *
7377425 ATAAATGTATCGACACTTTGTCGTGCATTTGGTTTGGAAAATACATTATGGATAAAAAGTATTGA
1 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
* **
7377490 CACTTGTT-TAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAATGTATTTAGG
66 CACTTGTTGT-ATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGTGTATTTAGG
*
7377554 CCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATTGACA
130 CCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACA
7377619 CTTGTT
195 CTTGTT
* *
7377625 ATAAATGTATTGACACTTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAAAAAGTATCGA
1 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
*
7377690 CACTTGTTGTATTTGTGTCGATACTTTATGTTTACCTGTTTTCTCATAAACCGGTGTATTTAGGC
66 CACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGTGTATTTAGGC
* *
7377755 CGATTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTTGATGTTTTTAGTATCGACAC
131 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
7377820 -T-TT
196 TTGTT
* * * * * * *** * * ***
7377823 GT---CG--T-G-CACTTGGT-TTGGAAAATACATTATGGACAAA-A-AGTATCGAC-ACTTGT-
1 ATAAATGTATCGACACTTTGTCGT-G-CACTTGGTT-TGGA-AAATACATTATGGACAAAAAGTA
* * * * * * **
7377876 T-GA-ATTTGTGTCGATACTTTATGT--ATACATGTTTTCTCATAAACCGGTGTAT-T--TAGGC
62 TCGACACTTGT-T-G-TA-TTTGTGTCGATAC-T-TTATGT-AT--ACCTGT-TTTCTCATAAAC
* * *
7377934 CGGT-TACATT------GTT--ATT-TTACCTATTA-C-ATT--A---TATCTATGTGATTCGAT
117 CGGTGTA-TTTAGGCCGGTTACATTGTTA--TTTTACCTATTACATTATATCTATGTGTTTCGAT
7377982 GTTTTTAGTATCGACACTTGTT
179 GTTTTTAGTATCGACACTTGTT
* *
7378004 ATAAATGTATCGACACTTTGTCGTGCATTTGGCTTT-GAAAATACATTATGGACAAAAAATATCG
1 ATAAATGTATCGACACTTTGTCGTGCACTTGG-TTTGGAAAATACATTATGGACAAAAAGTATCG
* * * * ** *
7378068 ACACTTGTTGGATTTGTGTCGATACTTTATATATACCTATTTTCTCATAAAACCGATAAATTTAA
65 ACACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCAT-AAACCGGTGTATTTAG
* * ** * * * *
7378133 ACCGGTTACATTGTAAAGTGACCTATTACATTATAAT-TATAG-GTTTCGATGTATTTGGGATCG
129 GCCGGTTACATTGTTATTTTACCTATTACATTAT-ATCTAT-GTGTTTCGATGTTTTTAGTATCG
*
7378196 ACACATGTT
192 ACACTTGTT
* * *
7378205 ATAAATGTATCGACATTTTTTTGTGCA-TTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
1 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
* *
7378269 CACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGGTGTATTTAGGC
66 CACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGTGTATTTAGGC
*
7378334 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGATTTTAGTATCGACAC
131 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
7378399 TTGTT
196 TTGTT
*
7378404 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTCTGGACAAAAAGTATCGA
1 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
* *
7378469 CACTTGTTGTATTTGTGTCGATACTTTATGTTTACTTGTTTTCTCATAAACCGGTGTATTTAGGC
66 CACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGTGTATTTAGGC
* *
7378534 CGATTACATTGTTATTTTA-CTATTACATTATATCTATGTGTTTTGATGTTTTTAGTATCGACAC
131 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
7378598 TTGTT
196 TTGTT
* * * *
7378603 ATAAATGTATCGACACTTTTCTCGTGCACTTGGTTTGG-AAATACATTATGAACAACATGTATCG
1 ATAAATGTATCGACAC-TTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCG
7378667 ACAC
65 ACAC
7378671 GAATGAATAA
Statistics
Matches: 1231, Mismatches: 147, Indels: 138
0.81 0.10 0.09
Matches are distributed among these distances:
179 32 0.03
180 1 0.00
181 3 0.00
182 1 0.00
183 2 0.00
184 12 0.01
185 7 0.01
186 11 0.01
187 30 0.02
188 20 0.02
189 10 0.01
190 10 0.01
191 19 0.02
192 25 0.02
193 19 0.02
194 5 0.00
195 11 0.01
196 7 0.01
198 7 0.01
199 188 0.15
200 672 0.55
201 132 0.11
202 7 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (200 bp):
ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
CACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGTGTATTTAGGC
CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
TTGTT
Found at i:7377650 original size:400 final size:400
Alignment explanation
Indices: 7377024--7378670 Score: 2312
Period size: 400 Copynumber: 4.2 Consensus size: 400
7377014 GGTACTTTTA
* * * * * *
7377024 ATAAATGTATCGACACTTTATGCGTGCACATAGTTTGG-GAATTCATTATGGATAAAAAGTATCG
1 ATAAATGTATCGACACTTTGT-CGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCG
*** * ** * * *
7377088 ACAC-AAATAAATAAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAA--ATTGGTAAATT
65 ACACTTGTTGAAT-TTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAGT-GT--ATT
* ** * * ** *
7377150 AAAACTGGTTACATTGTAAAGTGACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATC
126 TAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATC
7377215 GACACTTGTTATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAA
191 GACACTTGTTATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAA
* * *
7377280 AAAGTATTGACACTTGTTATATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACTGGT
256 AAAGTATCGACACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGT
* *
7377345 GTATTTAGGCCGGTTACATTGTTATTTTACCTATTACTTTATATCTATGTGATTCGATGTTTTTA
321 GTATTTAGGCCGATTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCGATGTTTTTA
7377410 GTATCGACACTTGTT
386 GTATCGACACTTGTT
* * *
7377425 ATAAATGTATCGACACTTTGTCGTGCATTTGGTTTGGAAAATACATTATGGATAAAAAGTATTGA
1 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
* *
7377490 CACTTGTTTAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAATGTATTTAGGC
66 CACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAGTGTATTTAGGC
*
7377555 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATTGACAC
131 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
* *
7377620 TTGTTATAAATGTATTGACACTTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAAAAAGT
196 TTGTTATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGT
*
7377685 ATCGACACTTGTTGTATTTGTGTCGATACTTTATGTTTACCTGTTTTCTCATAAACCGGTGTATT
261 ATCGACACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGTGTATT
7377750 TAGGCCGATTACATTGTTATTTTACCTATTACATTATATC----T-A-T-G-TG-TTTT-G-AT-
326 TAGGCCGATTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCGATGTTTTTAGTATC
7377803 G----TT-TT
391 GACACTTGTT
7377808 -T--A-GTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
1 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
*
7377869 CACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCGGTGTATTTAGGC
66 CACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAGTGTATTTAGGC
*
7377934 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCGATGTTTTTAGTATCGACAC
131 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
* *
7377999 TTGTTATAAATGTATCGACACTTTGTCGTGCATTTGGCTTT-GAAAATACATTATGGACAAAAAA
196 TTGTTATAAATGTATCGACACTTTGTCGTGCACTTGG-TTTGGAAAATACATTATGGACAAAAAG
* * * * **
7378063 TATCGACACTTGTTGGATTTGTGTCGATACTTTATATATACCTATTTTCTCATAAAACCGATAAA
260 TATCGACACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCAT-AAACCGGTGTA
** * * ** * * * *
7378128 TTTAAACCGGTTACATTGTAAAGTGACCTATTACATTATAAT-TATAG-GTTTCGATGTATTTGG
324 TTTAGGCCGATTACATTGTTATTTTACCTATTACATTAT-ATCTAT-GTGATTCGATGTTTTTAG
* *
7378191 GATCGACACATGTT
387 TATCGACACTTGTT
* * *
7378205 ATAAATGTATCGACATTTTTTTGTGCA-TTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
1 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
* * *
7378269 CACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGGTGTATTTAGGC
66 CACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAGTGTATTTAGGC
*
7378334 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGATTTTAGTATCGACAC
131 CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
*
7378399 TTGTTATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTCTGGACAAAAAGT
196 TTGTTATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGT
* *
7378464 ATCGACACTTGTTGTATTTGTGTCGATACTTTATGTTTACTTGTTTTCTCATAAACCGGTGTATT
261 ATCGACACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGTGTATT
* *
7378529 TAGGCCGATTACATTGTTATTTTA-CTATTACATTATATCTATGTGTTTTGATGTTTTTAGTATC
326 TAGGCCGATTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCGATGTTTTTAGTATC
7378593 GACACTTGTT
391 GACACTTGTT
* * * *
7378603 ATAAATGTATCGACACTTTTCTCGTGCACTTGGTTTGG-AAATACATTATGAACAACATGTATCG
1 ATAAATGTATCGACAC-TTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCG
7378667 ACAC
65 ACAC
7378671 GAATGAATAA
Statistics
Matches: 1114, Mismatches: 98, Indels: 70
0.87 0.08 0.05
Matches are distributed among these distances:
379 286 0.26
380 44 0.04
381 2 0.00
382 1 0.00
383 2 0.00
384 2 0.00
386 1 0.00
387 1 0.00
388 3 0.00
389 5 0.00
390 2 0.00
391 6 0.01
392 3 0.00
393 1 0.00
394 1 0.00
395 1 0.00
396 2 0.00
397 5 0.00
398 56 0.05
399 66 0.06
400 517 0.46
401 99 0.09
402 6 0.01
403 2 0.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (400 bp):
ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGA
CACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAGTGTATTTAGGC
CGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACAC
TTGTTATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGT
ATCGACACTTGTTGTATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACCGGTGTATT
TAGGCCGATTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCGATGTTTTTAGTATC
GACACTTGTT
Found at i:7378333 original size:779 final size:779
Alignment explanation
Indices: 7377030--7378599 Score: 2434
Period size: 779 Copynumber: 2.0 Consensus size: 779
7377020 TTTAATAAAT
* * *
7377030 GTATCGACACTTTATGCGTGCACATAGTTTGGGAATTCATTATGGATAAAAAGTATCGACACAAA
1 GTATCGACACTTTATGCGTGCACATAGTTTGGAAATACATTATGGACAAAAAGTATCGACACAAA
* ** *
7377095 TAAATAAAGTGTCGATACTTTATGTATACCTATTTTCTCATAAAATTGGTAAATTAAAACTGGTT
66 TAAATAAAGTGTCGATACTTTATGTATACATATTTTCTCATAAAACCGGTAAATTAAAACCGGTT
*
7377160 ACATTGTAAAGTGACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACACTTGTT
131 ACATTGTAAAGTGACCTATTACATTATATCTATGTGATTCGATGTTTTTAGTATCGACACTTGTT
* *
7377225 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATTGA
196 ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAATATCGA
* * * * * ** **
7377290 CACTTGTTATATTTGTGTCGATACTTTATGTATACCTGTTTTCTCATAAACTGGTGTATTTAGGC
261 CACTTGTTAGATTTGTGTCGATACTTTATATATACCTATTTTCTCATAAACCGATAAATTTAAAC
* ** * * * *
7377355 CGGTTACATTGTTATTTTACCTATTACTTTATATCTATGTGATTCGATGTTTTTAGTATCGACAC
326 CGGTTACATTGTAAAGTGACCTATTACATTATATCTATGTGATTCGATGTATTTAGGATCGACAC
* *
7377420 TTGTTATAAATGTATCGACACTTTGTCGTGCATTTGGTTTGGAAAATACATTATGGATAAAAAGT
391 ATGTTATAAATGTATCGACACTTTGTCGTGCATTTGGTTTGGAAAATACATTATGGACAAAAAGT
* *
7377485 ATTGACACTTGTTTAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAATGTATT
456 ATCGACACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAATGTATT
* *
7377550 TAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATT
521 TAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGATTTTAGTATC
*
7377615 GACACTTGTTATAAATGTATTGACACTTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAA
586 GACACTTGTTATAAATGTATCGACACTTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAA
7377680 AAAGTATCGACACTTGTTGTATTTGTGTCGATACTTTATGTTTACCTGTTTTCTCATAAACCGGT
651 AAAGTATCGACACTTGTTGTATTTGTGTCGATACTTTATGTTTACCTGTTTTCTCATAAACCGGT
7377745 GTATTTAGGCCGATTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTTGATGTTTTTA
716 GTATTTAGGCCGATTACATTGTTATTTTA-CTATTACATTATATCTATGTGTTTTGATGTTTTTA
* * * *
7377810 GTATCGACACTTTGT-CGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAGTATCGACACTT
1 GTATCGACACTTTATGCGTGCACATAGTTTGG-AAATACATTATGGACAAAAAGTATCGACAC-A
** * ** * ** * **
7377874 GTTGAAT-TTGTGTCGATACTTTATGTATACATGTTTTCTCAT-AAACCGGTGTATTTAGGCCGG
64 AATAAATAAAGTGTCGATACTTTATGTATACATATTTTCTCATAAAACCGGTAAATTAAAACCGG
* ** *
7377937 TTACATTGTTATTTTACCTATTACATTATATCTATGTGATTCGATGTTTTTAGTATCGACACTTG
129 TTACATTGTAAAGTGACCTATTACATTATATCTATGTGATTCGATGTTTTTAGTATCGACACTTG
*
7378002 TTATAAATGTATCGACACTTTGTCGTGCATTTGGCTTT-GAAAATACATTATGGACAAAAAATAT
194 TTATAAATGTATCGACACTTTGTCGTGCACTTGG-TTTGGAAAATACATTATGGACAAAAAATAT
*
7378066 CGACACTTGTTGGATTTGTGTCGATACTTTATATATACCTATTTTCTCATAAAACCGATAAATTT
258 CGACACTTGTTAGATTTGTGTCGATACTTTATATATACCTATTTTCTCAT-AAACCGATAAATTT
* *
7378131 AAACCGGTTACATTGTAAAGTGACCTATTACATTATAAT-TATAG-GTTTCGATGTATTTGGGAT
322 AAACCGGTTACATTGTAAAGTGACCTATTACATTAT-ATCTAT-GTGATTCGATGTATTTAGGAT
* * *
7378194 CGACACATGTTATAAATGTATCGACATTTTTTTGTGCA-TTGGTTTGGAAAATACATTATGGACA
385 CGACACATGTTATAAATGTATCGACACTTTGTCGTGCATTTGGTTTGGAAAATACATTATGGACA
* * **
7378258 AAAAGTATCGACACTTGTTGGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGG
450 AAAAGTATCGACACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAA
7378323 TGTATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGATTTT
515 TGTATTTAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGATTTT
* *
7378388 AGTATCGACACTTGTTATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTCT
580 AGTATCGACACTTGTTATAAATGTATCGACACTTTGTCGTGCACTTGATTTGGAAAATACATTAT
*
7378453 GGACAAAAAGTATCGACACTTGTTGTATTTGTGTCGATACTTTATGTTTACTTGTTTTCTCATAA
645 GGACAAAAAGTATCGACACTTGTTGTATTTGTGTCGATACTTTATGTTTACCTGTTTTCTCATAA
7378518 ACCGGTGTATTTAGGCCGATTACATTGTTATTTTACTATTACATTATATCTATGTGTTTTGATGT
710 ACCGGTGTATTTAGGCCGATTACATTGTTATTTTACTATTACATTATATCTATGTGTTTTGATGT
7378583 TTTTA
775 TTTTA
7378588 GTATCGACACTT
1 GTATCGACACTT
7378600 GTTATAAATG
Statistics
Matches: 718, Mismatches: 66, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
778 47 0.07
779 498 0.69
780 166 0.23
781 7 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (779 bp):
GTATCGACACTTTATGCGTGCACATAGTTTGGAAATACATTATGGACAAAAAGTATCGACACAAA
TAAATAAAGTGTCGATACTTTATGTATACATATTTTCTCATAAAACCGGTAAATTAAAACCGGTT
ACATTGTAAAGTGACCTATTACATTATATCTATGTGATTCGATGTTTTTAGTATCGACACTTGTT
ATAAATGTATCGACACTTTGTCGTGCACTTGGTTTGGAAAATACATTATGGACAAAAAATATCGA
CACTTGTTAGATTTGTGTCGATACTTTATATATACCTATTTTCTCATAAACCGATAAATTTAAAC
CGGTTACATTGTAAAGTGACCTATTACATTATATCTATGTGATTCGATGTATTTAGGATCGACAC
ATGTTATAAATGTATCGACACTTTGTCGTGCATTTGGTTTGGAAAATACATTATGGACAAAAAGT
ATCGACACTTGTTGAATTTGTGTCGATACTTTATGTATACATGTTTTCTCATAAACCAATGTATT
TAGGCCGGTTACATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGATTTTAGTATC
GACACTTGTTATAAATGTATCGACACTTTGTCGTGCACTTGATTTGGAAAATACATTATGGACAA
AAAGTATCGACACTTGTTGTATTTGTGTCGATACTTTATGTTTACCTGTTTTCTCATAAACCGGT
GTATTTAGGCCGATTACATTGTTATTTTACTATTACATTATATCTATGTGTTTTGATGTTTTTA
Found at i:7380146 original size:3 final size:3
Alignment explanation
Indices: 7380138--7380178 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
7380128 ACTTGTTTGG
* * *
7380138 ATC ATC ATC ATC ATC ATC ATC ATC TTC ATC GTC ATC TTC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
7380179 TGACCTCTTG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.27, C:0.32, G:0.02, T:0.39
Consensus pattern (3 bp):
ATC
Found at i:7381359 original size:15 final size:15
Alignment explanation
Indices: 7381335--7381376 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
7381325 ATGATGTTGT
7381335 GGTTGAGAAGAGGTG
1 GGTTGAGAAGAGGTG
*
7381350 GGTTGGGAAGAGGTG
1 GGTTGAGAAGAGGTG
*
7381365 GGTTGAAAAGAG
1 GGTTGAGAAGAG
7381377 CTTTGAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.52, T:0.19
Consensus pattern (15 bp):
GGTTGAGAAGAGGTG
Found at i:7382037 original size:199 final size:199
Alignment explanation
Indices: 7381711--7382207 Score: 834
Period size: 199 Copynumber: 2.5 Consensus size: 199
7381701 CATTATGGTG
* *
7381711 ACCTGTTTTCTCAAAAACCGGTATATTTAGTCTGGTTACATTATTAATTTACCTATTACATTATA
1 ACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACATTGTTAATTTACCTATTACATTATA
* * * *
7381776 ATTATGGGTTTCGATATTTTTGGGATCGACACTTGTTATAAATGTATCGATACTTATTCGTGCAC
66 ATTATGGGTTTCGATGTTTTTGGGATCGACACTTATTATAAATATATCGACACTTATTCGTGCAC
7381841 TTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTT
131 TTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTT
7381906 GTAC
196 GTAC
* * * *
7381910 ACCTGTTTTTCTC-AAAACCAGTACATTTAGACCGGTTACATTGTTAATTTACCTATTACATTAA
1 ACCTG-TTTTCTCAAAAACCGGTATATTTAGACTGGTTACATTGTTAATTTACCTATTACATTAT
* *
7381974 AATTTTGGGTTTCGATGTTTTTGGGATCGACACTTATTATAAATATATCGACACTTTTTCGTGCA
65 AATTATGGGTTTCGATGTTTTTGGGATCGACACTTATTATAAATATATCGACACTTATTCGTGCA
*
7382039 CTTGGTTTAGAAATTCATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTT
130 CTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTT
7382104 TGTAC
195 TGTAC
* *
7382109 ACCTGTTTTCTCAAAAATCGGTATATTTAGACTTGTTACATTGTTAATTTACCTATTACATTATA
1 ACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACATTGTTAATTTACCTATTACATTATA
*
7382174 ATTATGGGTTTTGATGTTTTTGGGATCGACACTT
66 ATTATGGGTTTCGATGTTTTTGGGATCGACACTT
7382208 TTTCGTGCAC
Statistics
Matches: 275, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
198 7 0.03
199 261 0.95
200 7 0.03
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (199 bp):
ACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACATTGTTAATTTACCTATTACATTATA
ATTATGGGTTTCGATGTTTTTGGGATCGACACTTATTATAAATATATCGACACTTATTCGTGCAC
TTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTT
GTAC
Found at i:7382319 original size:178 final size:178
Alignment explanation
Indices: 7382020--7382584 Score: 826
Period size: 178 Copynumber: 3.1 Consensus size: 178
7382010 TTATAAATAT
7382020 ATCGACACTTTTTCGTGCACTTGGTTTAGAAAT-TCATTCTGGACCAAAAGTATCGACACTTGTT
1 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATAT-ATTCTGGACCAAAAGTATCGACACTTGTT
* *
7382084 TTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACTTGTTACA
65 TTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACA
*
7382149 TTGTTAATTTACCTATTACATTATAATTATGGGTTTTGATGTTTTTGGG
130 TTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
*
7382198 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATATATTCTTGACCAAAAGTATCGACACTTGTTT
1 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATATATTCTGGACCAAAAGTATCGACACTTGTTT
7382263 TATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACAT
66 TATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACAT
*
7382328 TGTTAATTTACCTATTACATTATAATTTTGGGTTTCGATGTTTTTGGG
131 TGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
*
7382376 ATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGAC
1 ATCGACAC----------T-T-T------TT---CGTGCACTTGGTTTAGAAATATATTCTGGAC
* * *
7382441 CAAAAGTATCGACACTTGTTTTATTTGTGTCGATATTTTTTGTACACTTGTTTTCTCAAAAACCA
45 CAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCG
* *
7382506 GCATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTT
110 GTATATTTAGACTGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTT
7382571 TGGG
175 TGGG
7382575 ATCGACACTT
1 ATCGACACTT
7382585 GTTATAAATG
Statistics
Matches: 352, Mismatches: 13, Indels: 34
0.88 0.03 0.09
Matches are distributed among these distances:
178 179 0.51
179 1 0.00
188 2 0.01
189 2 0.01
190 1 0.00
196 2 0.01
199 165 0.47
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (178 bp):
ATCGACACTTTTTCGTGCACTTGGTTTAGAAATATATTCTGGACCAAAAGTATCGACACTTGTTT
TATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACAT
TGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
Found at i:7382526 original size:377 final size:377
Alignment explanation
Indices: 7381821--7382979 Score: 1757
Period size: 377 Copynumber: 3.0 Consensus size: 377
7381811 TTATAAATGT
* *
7381821 ATCGATACTTATTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTT
1 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTT
* * *
7381886 TATTTGTGTCGATACTTTTTGTACACCTGTTTTTCTC-AAAACCAGTACATTTAGACCGGTTACA
66 TATTTGTGTCGATACTTTTTGTACACCTG-TTTTCTCAAAAACCGGTATATTTAGACTGGTTACA
* *
7381950 TTGTTAATTTACCTATTACATTAAAATTTTGGGTTTCGATGTTTTTGGGATCGACACTTATTATA
130 TTGTTAATTTACCTATTACATTATAATTTTGGGTTTCGATGTTTTTGGGATCGACACTTGTTATA
* *
7382015 AATATATCGACACTTTTTCGTGCACTTGGTTTAGAAATTCATTCTGGACCAAAAGTATCGACACT
195 AATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACT
* * **
7382080 TGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACTTGT
260 TGTTTTATTTGTGTCGATATTTTTTGTACACTTGTTTTCTCAAAAATCGGTATATTTAGACCGGT
*
7382145 TACATTGTTAATTTACCTATTACATTATAATTATGGGTTTTGATGTTTTTGGG
325 TACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
* *
7382198 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATATATTCTTGACCAAAAGTATCGACACTTGTTT
1 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTT
7382263 TATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACAT
66 TATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACAT
7382328 TGTTAATTTACCTATTACATTATAATTTTGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
131 TGTTAATTTACCTATTACATTATAATTTTGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
7382393 ATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTT
196 ATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTT
* * *
7382458 GTTTTATTTGTGTCGATATTTTTTGTACACTTGTTTTCTCAAAAACCAGCATATTTAGACCGGTT
261 GTTTTATTTGTGTCGATATTTTTTGTACACTTGTTTTCTCAAAAATCGGTATATTTAGACCGGTT
7382523 ACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
326 ACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
7382575 ATCGACACTTGTTATAAATGTATCAACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGAC
1 AT-----C-----------G-----ACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGAC
* * *
7382640 CAAAAGTATCGATACTTGTTTTATTTGTGTCGATACTTTTTGTACACTTATTTTCTCAAAAACCG
45 CAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCG
* * *
7382705 GTATATTTAGACTTGTTACATTATTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTT
110 GTATATTTAGACTGGTTACATTGTTAATTTACCTATTACATTATAATTTTGGGTTTCGATGTTTT
* *
7382770 TGGGATCGATACTTGTTATAAATGTATCGACACTTTTTTGTGCACTTGGTTTAGAAATACA-TCT
175 TGGGATCGACACTTGTTATAAATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTC-
*
7382834 TGGACCAAAAGTATCGACACAAACACTTGTTTTATTTGTGTCGAT-TTTTTTGTAGACTTGTTTT
239 TGGACCAAAAGTATCG------ACACTTGTTTTATTTGTGTCGATATTTTTTGTACACTTGTTTT
* * *
7382898 CTCAAAAATCGGTATATTTAGATCGGTTACATTGTTAATTTACCTATTACTTTATAATTATAGGT
298 CTCAAAAATCGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGT
7382963 TTCGATGTTTTTGGG
363 TTCGATGTTTTTGGG
7382978 AT
1 AT
7382980 TGATACTTGT
Statistics
Matches: 717, Mismatches: 36, Indels: 32
0.91 0.05 0.04
Matches are distributed among these distances:
376 7 0.01
377 352 0.49
382 1 0.00
393 1 0.00
397 2 0.00
398 237 0.33
403 94 0.13
404 23 0.03
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.43
Consensus pattern (377 bp):
ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTT
TATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACAT
TGTTAATTTACCTATTACATTATAATTTTGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
ATGTATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTT
GTTTTATTTGTGTCGATATTTTTTGTACACTTGTTTTCTCAAAAATCGGTATATTTAGACCGGTT
ACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGG
Found at i:7382538 original size:199 final size:199
Alignment explanation
Indices: 7382198--7383006 Score: 1325
Period size: 199 Copynumber: 4.0 Consensus size: 199
7382188 TGTTTTTGGG
* *
7382198 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATATATTCTTGACCAAAAGTATCGACACTTGTTT
1 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTT
* *
7382263 TATTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACTGGTTACAT
66 TATTTGTGTCGATACTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACAT
*
7382328 TGTTAATTTACCTATTACATTATAATTTTGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
131 TGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
7382393 ATGT
196 ATGT
7382397 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTT
1 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTT
* * *
7382462 TATTTGTGTCGATATTTTTTGTACACTTGTTTTCTCAAAAACCAGCATATTTAGACCGGTTACAT
66 TATTTGTGTCGATACTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACAT
7382527 TGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
131 TGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
7382592 ATGT
196 ATGT
* *
7382596 ATCAACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGATACTTGTTT
1 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTT
* **
7382661 TATTTGTGTCGATACTTTTTGTACACTTATTTTCTCAAAAACCGGTATATTTAGACTTGTTACAT
66 TATTTGTGTCGATACTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACAT
* *
7382726 TATTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTGTTATAA
131 TGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
7382791 ATGT
196 ATGT
*
7382795 ATCGACACTTTTTTGTGCACTTGGTTTAGAAATACA-TCTTGGACCAAAAGTATCGACACAAACA
1 ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTC-TGGACCAAAAGTATCG------ACA
* * * *
7382859 CTTGTTTTATTTGTGTCGAT-TTTTTTGTAGACTTGTTTTCTCAAAAATCGGTATATTTAGATCG
59 CTTGTTTTATTTGTGTCGATACTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGACCG
* * * *
7382923 GTTACATTGTTAATTTACCTATTACTTTATAATTATAGGTTTCGATGTTTTTGGGATTGATACTT
124 GTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTT
7382988 GTTATAAATGT
189 GTTATAAATGT
7382999 ATCGACAC
1 ATCGACAC
7383007 ATAAGTTTAC
Statistics
Matches: 571, Mismatches: 32, Indels: 9
0.93 0.05 0.01
Matches are distributed among these distances:
198 2 0.00
199 430 0.75
204 117 0.20
205 22 0.04
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.43
Consensus pattern (199 bp):
ATCGACACTTTTTCGTGCACTTGGTTTAGAAATACATTCTGGACCAAAAGTATCGACACTTGTTT
TATTTGTGTCGATACTTTTTGTACACTTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACAT
TGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAA
ATGT
Found at i:7383403 original size:19 final size:19
Alignment explanation
Indices: 7383379--7383427 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
7383369 TTACATTCAC
7383379 ATACAAAATTATAAATCAT
1 ATACAAAATTATAAATCAT
*
7383398 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCAT
7383417 ATACAAAATTA
1 ATACAAAATTA
7383428 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCAT
Found at i:7385640 original size:22 final size:22
Alignment explanation
Indices: 7385612--7385666 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
7385602 AACCTGCATT
7385612 TATAATAAAAGT-TATCATTTTA
1 TATAATAAAA-TATATCATTTTA
7385634 TATAATAAATATACTATCATTTTA
1 TATAATAAA-ATA-TATCATTTTA
7385658 TATAA-AAAA
1 TATAATAAAA
7385667 CAAAAACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.37
23 4 0.13
24 15 0.50
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (22 bp):
TATAATAAAATATATCATTTTA
Found at i:7386950 original size:19 final size:19
Alignment explanation
Indices: 7386922--7387051 Score: 91
Period size: 19 Copynumber: 6.6 Consensus size: 19
7386912 CATTTATACA
*
7386922 ACCTAAAATATCATTTTCT
1 ACCTATAATATCATTTTCT
* *
7386941 ACCTATAATATTATATTATAT
1 ACCTATAATATCAT-TT-TCT
* * *
7386962 ACATGTATCGATATTTATTTTCT
1 AC--CTAT-AATA-TCATTTTCT
* * *
7386985 ACCTAGAACATCACTTTCT
1 ACCTATAATATCATTTTCT
* * *
7387004 ACATGTAATATCATTTTTT
1 ACCTATAATATCATTTTCT
7387023 ACCTATAATATCATTTT-T
1 ACCTATAATATCATTTTCT
7387041 ACCTATAATAT
1 ACCTATAATAT
7387052 TAAATAAAAA
Statistics
Matches: 85, Mismatches: 20, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
18 12 0.14
19 47 0.55
20 4 0.05
21 6 0.07
23 7 0.08
24 5 0.06
25 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (19 bp):
ACCTATAATATCATTTTCT
Found at i:7387041 original size:18 final size:19
Alignment explanation
Indices: 7387009--7387051 Score: 79
Period size: 18 Copynumber: 2.3 Consensus size: 19
7386999 TTTCTACATG
7387009 TAATATCATTTTTTACCTA
1 TAATATCATTTTTTACCTA
7387028 TAATATCA-TTTTTACCTA
1 TAATATCATTTTTTACCTA
7387046 TAATAT
1 TAATAT
7387052 TAAATAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATCATTTTTTACCTA
Found at i:7387093 original size:95 final size:100
Alignment explanation
Indices: 7386922--7387105 Score: 270
Period size: 95 Copynumber: 1.9 Consensus size: 100
7386912 CATTTATACA
** **
7386922 ACCTAAAATATCATTTTCTACCTATAATATTATATTATATACATGTATCGATATTTATTTTCTAC
1 ACCTAAAATATCATTTTCTACCTATAATATTATA-TATATACAAATATCGATATTTATCATCTAC
7386987 CTAGAACATCACTTTCTACATGTAATATCATTTTTT
65 CTAGAACATCACTTTCTACATGTAATATCATTTTTT
*
7387023 ACCTATAATATCATTTT-TACCTATAATATTA-A-ATA-A-AAATATCGATATTTATCATCTACC
1 ACCTAAAATATCATTTTCTACCTATAATATTATATATATACAAATATCGATATTTATCATCTACC
*
7387083 TAGAATATCACTTTCTACATGTA
66 TAGAACATCACTTTCTACATGTA
7387106 TTCGGTGTCA
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
95 42 0.55
96 1 0.01
97 3 0.04
99 1 0.01
100 14 0.18
101 16 0.21
ACGTcount: A:0.36, C:0.17, G:0.04, T:0.43
Consensus pattern (100 bp):
ACCTAAAATATCATTTTCTACCTATAATATTATATATATACAAATATCGATATTTATCATCTACC
TAGAACATCACTTTCTACATGTAATATCATTTTTT
Found at i:7387727 original size:161 final size:162
Alignment explanation
Indices: 7387542--7387853 Score: 513
Period size: 162 Copynumber: 1.9 Consensus size: 162
7387532 TTGAGACCGA
*
7387542 TTTTGTAATATTTTTACATGTTATATTGTTATGGATCGATACATTTT-TTAAAGTATCGACACTT
1 TTTTGTAATATTTTTACATGTTATATTGTTATGGATCGATACATTTTCATAAAGTATCGACACTT
*
7387606 TATAGGCGCTATAACTTATTCTCTTTTAAATTCCA-AAAGTGTCGATACTTATATTAAAGTATTG
66 TATAGGCGCTATAACTTATTCTCTTTTAAATT-CAGAAAGTGTCGATACTTATATTAAAGTATCG
* *
7387670 ATACTTTCAACATATCTGGTAGTTCTTTATCAG
130 ACACTTTCAACATATCCGGTAGTTCTTTATCAG
*
7387703 TTTTGTCATATTTTTAGC-TGTTATATTGTTATGGATCGATACATTTTCATAAAGTATCGACACT
1 TTTTGTAATATTTTTA-CATGTTATATTGTTATGGATCGATACATTTTCATAAAGTATCGACACT
* * *
7387767 TTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCG
65 TTATAGGCGCTATAACTTATTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAAGTATCG
7387832 ACACTTTCAACATATCCGGTAG
130 ACACTTTCAACATATCCGGTAG
7387854 CGCTTTACCG
Statistics
Matches: 140, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
161 46 0.33
162 94 0.67
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (162 bp):
TTTTGTAATATTTTTACATGTTATATTGTTATGGATCGATACATTTTCATAAAGTATCGACACTT
TATAGGCGCTATAACTTATTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAAGTATCGA
CACTTTCAACATATCCGGTAGTTCTTTATCAG
Found at i:7388117 original size:185 final size:183
Alignment explanation
Indices: 7387702--7388299 Score: 887
Period size: 182 Copynumber: 3.3 Consensus size: 183
7387692 TTCTTTATCA
* **
7387702 GTTTTGTCATATTTTTAGCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTATCGACACT
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
* *
7387767 TTTTAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGATACTTATATTAAATTATC
66 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAAGTGTCGATACTTATATTAAATTATC
* * * *
7387831 GACACTTTCAACATATCCGGTAGCGCTTTACCGGA-TTTGTCATTTTGGGACCG
131 GACACTTTCAACATATCCGGTATCGTTTTACC-GATTTTGTCATTTTGAGACCC
* * *
7387884 GTTTTGTAATATTTTTACCTGTTATATTATTATGGATCGATACATTTTTTTAAAGTATCGGCACT
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
* * *
7387949 TTATAGGCACTATAACTTCTTCTCTTTTAAATTCCAAAAAATTTCGATACTTATATTAAATTATC
66 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAAGTGTCGATACTTATATTAAATTATC
** **
7388014 GACACTTTCAACATATCCGGTATTTTTTTTACCGATTTTGTCATTTTTGAGACAT
131 GACACTTTCAACATATCCGGTA-TCGTTTTACCGATTTTGTCA-TTTTGAGACCC
** *
7388069 GTTTTGTCATATTTTTATATGTTATATTGTTATGGATTGATACATTTTTTTAAAGTATCGACACT
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
7388134 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCC-AAAAGTGTCGATACTTATATTAAATTATC
66 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAAGTGTCGATACTTATATTAAATTATC
* * * *
7388198 GACACTTTCAATATATCCGATATCGTTTTACCGGTTTTGTCATTTCGAGACCC
131 GACACTTTCAACATATCCGGTATCGTTTTACCGATTTTGTCATTTTGAGACCC
* * *
7388251 GTTTTGTCATATTTTTACCTGTAATATTGCTATGGAGCGATACATTTTT
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
7388300 CATTTGTATC
Statistics
Matches: 371, Mismatches: 41, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
182 141 0.38
183 69 0.19
184 60 0.16
185 101 0.27
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (183 bp):
GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAAGTGTCGATACTTATATTAAATTATC
GACACTTTCAACATATCCGGTATCGTTTTACCGATTTTGTCATTTTGAGACCC
Found at i:7388983 original size:24 final size:25
Alignment explanation
Indices: 7388947--7388993 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
7388937 TATTAAATTT
*
7388947 AAAAAATACATTCA-AAATTTTCAA
1 AAAAAAAACATTCACAAATTTTCAA
* *
7388971 AAAAAAAATATTCACTAATTTTC
1 AAAAAAAACATTCACAAATTTTC
7388994 TTAAGGAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (25 bp):
AAAAAAAACATTCACAAATTTTCAA
Found at i:7389232 original size:26 final size:26
Alignment explanation
Indices: 7389171--7389233 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
7389161 TATAAACAGT
* *
7389171 TAATTAAATCAGTTTCTCAAATTAGC
1 TAATTAAATCAGTTGCTCAAATCAGC
* *
7389197 TAATCAAATCAGTTGGTCAAATCAGC
1 TAATTAAATCAGTTGCTCAAATCAGC
7389223 T-ATTAGAATCA
1 TAATTA-AATCA
7389234 AATACCAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 3 0.10
26 28 0.90
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (26 bp):
TAATTAAATCAGTTGCTCAAATCAGC
Found at i:7391916 original size:72 final size:72
Alignment explanation
Indices: 7391814--7391966 Score: 225
Period size: 72 Copynumber: 2.1 Consensus size: 72
7391804 GATGATGGGA
* *
7391814 ACAATCATGGAGGTCATGACTATGACCATGAGCAAGTTTATGTCCATGGTCAAGGTGATCATGAC
1 ACAATCATGGAGGTCATGACTATGACCATGAGCAAGTTTATATCCATGGTCAAGGTGATAATGAC
7391879 GGTGGAC
66 GGTGGAC
* * * * * *
7391886 ACAATCATGGTGGTCATGACTATGAGCATGATCATGTTTATATCCATGGTCATGGTGATAATGAT
1 ACAATCATGGAGGTCATGACTATGACCATGAGCAAGTTTATATCCATGGTCAAGGTGATAATGAC
*
7391951 GGTGGGC
66 GGTGGAC
7391958 ACAATCATG
1 ACAATCATG
7391967 TGCAGCTTGA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (72 bp):
ACAATCATGGAGGTCATGACTATGACCATGAGCAAGTTTATATCCATGGTCAAGGTGATAATGAC
GGTGGAC
Found at i:7393690 original size:32 final size:31
Alignment explanation
Indices: 7393628--7393690 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
7393618 TTCGGGTCAA
* * **
7393628 ATTTTTTTAAAAAAAATCGGGATCGGGTCGG
1 ATTTTTTTAAAAAAAATCAGCATCAAGTCGG
*
7393659 ATTTTTTTAAAAAAAATCCAGCTTCAAGTCGG
1 ATTTTTTTAAAAAAAAT-CAGCATCAAGTCGG
7393691 GTCGGGTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (31 bp):
ATTTTTTTAAAAAAAATCAGCATCAAGTCGG
Found at i:7393701 original size:37 final size:36
Alignment explanation
Indices: 7393619--7393782 Score: 113
Period size: 37 Copynumber: 4.5 Consensus size: 36
7393609 AGTTTAATAT
** *
7393619 TCGGGTCAAATTTTTTTAAAAAAAAT-CGG---GA-
1 TCGGGTCGGATTTTTTTAAAAAAAATCCGGTTCAAG
*
7393650 TCGGGTCGGATTTTTTTAAAAAAAATCCAGCTTCAAG
1 TCGGGTCGGATTTTTTTAAAAAAAATCC-GGTTCAAG
* *** * * * **
7393687 TCGGGTCGGGTTTTTTTTAAGTGTGATATTCGGGTCGGG
1 TCGGGTC-GGATTTTTTTAA--AAAAAATCCGGTTCAAG
7393726 ATCGGGTCGGATTTTTTTAAAAAAAATCCGGGTTCAAG
1 -TCGGGTCGGATTTTTTTAAAAAAAATCC-GGTTCAAG
*
7393764 TCGGGTCGGGTTTTTTTAA
1 TCGGGTCGGATTTTTTTAA
7393783 GTATGATATT
Statistics
Matches: 98, Mismatches: 24, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
31 24 0.24
32 1 0.01
33 1 0.01
36 1 0.01
37 29 0.30
38 16 0.16
39 15 0.15
40 11 0.11
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (36 bp):
TCGGGTCGGATTTTTTTAAAAAAAATCCGGTTCAAG
Found at i:7393790 original size:76 final size:77
Alignment explanation
Indices: 7393644--7393808 Score: 287
Period size: 77 Copynumber: 2.2 Consensus size: 77
7393634 TTAAAAAAAA
7393644 TCGGGATCGGGTCGGATTTTTTTAAAAAAAATCCAGCTTCAAGTCGGGTCGGGTTTTTTTTAAGT
1 TCGGGATCGGGTCGGATTTTTTTAAAAAAAATCCAGCTTCAAGTCGGGTCGGGTTTTTTTTAAGT
*
7393709 GTGATATTCGGG
66 ATGATATTCGGG
* *
7393721 TCGGGATCGGGTCGGATTTTTTTAAAAAAAATCCGGGTTCAAGTCGGGTCGGG-TTTTTTTAAGT
1 TCGGGATCGGGTCGGATTTTTTTAAAAAAAATCCAGCTTCAAGTCGGGTCGGGTTTTTTTTAAGT
7393785 ATGATATTCGGG
66 ATGATATTCGGG
*
7393797 TCGGGTTCGGGT
1 TCGGGATCGGGT
7393809 TTAGAGTGAA
Statistics
Matches: 84, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
76 33 0.39
77 51 0.61
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.36
Consensus pattern (77 bp):
TCGGGATCGGGTCGGATTTTTTTAAAAAAAATCCAGCTTCAAGTCGGGTCGGGTTTTTTTTAAGT
ATGATATTCGGG
Found at i:7394000 original size:26 final size:26
Alignment explanation
Indices: 7393971--7394041 Score: 142
Period size: 26 Copynumber: 2.7 Consensus size: 26
7393961 GGTCAGGTCG
7393971 GGTGAAACTTTATTTTGGTCGGATCA
1 GGTGAAACTTTATTTTGGTCGGATCA
7393997 GGTGAAACTTTATTTTGGTCGGATCA
1 GGTGAAACTTTATTTTGGTCGGATCA
7394023 GGTGAAACTTTATTTTGGT
1 GGTGAAACTTTATTTTGGT
7394042 TGGGTCGGGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.41
Consensus pattern (26 bp):
GGTGAAACTTTATTTTGGTCGGATCA
Found at i:7394428 original size:18 final size:18
Alignment explanation
Indices: 7394405--7394439 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7394395 TTTCAGATTC
*
7394405 AGATTCCAATTCTTTCAT
1 AGATTCCAATTCCTTCAT
7394423 AGATTCCAATTCCTTCA
1 AGATTCCAATTCCTTCA
7394440 GAAACATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.40
Consensus pattern (18 bp):
AGATTCCAATTCCTTCAT
Found at i:7395312 original size:18 final size:19
Alignment explanation
Indices: 7395284--7395319 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7395274 TTATTATATT
7395284 TAAATAAATAAAAATTAAA
1 TAAATAAATAAAAATTAAA
*
7395303 TAAA-AAATAATAATTAA
1 TAAATAAATAAAAATTAA
7395320 TATGTCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
TAAATAAATAAAAATTAAA
Found at i:7405414 original size:81 final size:81
Alignment explanation
Indices: 7405310--7405471 Score: 288
Period size: 81 Copynumber: 2.0 Consensus size: 81
7405300 GAGGTGGGGT
*
7405310 TGTTGATTGCTTTGTTGGGACCCTGAAATCTATCTCAAGTGCCCAATTTTGTAAAATTCAGTGCA
1 TGTTGATTGCTTTGTTGGGACCCTGAAATCTATCTCAAGTGCCCAATCTTGTAAAATTCAGTGCA
7405375 CTATATTACCATGTTC
66 CTATATTACCATGTTC
*
7405391 TGTTGATTGCTTTGTTGGGACCCTGAAATCTCTCTCAAGTGCCCAATCTTGTAAAATTCAGTGCA
1 TGTTGATTGCTTTGTTGGGACCCTGAAATCTATCTCAAGTGCCCAATCTTGTAAAATTCAGTGCA
* *
7405456 TTGTATTACCATGTTC
66 CTATATTACCATGTTC
7405472 CACCATAGAC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.38
Consensus pattern (81 bp):
TGTTGATTGCTTTGTTGGGACCCTGAAATCTATCTCAAGTGCCCAATCTTGTAAAATTCAGTGCA
CTATATTACCATGTTC
Found at i:7409910 original size:24 final size:25
Alignment explanation
Indices: 7409882--7409943 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
7409872 AGTTTTTTAC
*
7409882 TATTAAATCATTT-TTAGTAATAAT
1 TATTAAATCATTTATTAGTAACAAT
** *
7409906 TATTATAATTTTTTTATTAGTAACCAT
1 TATTA-AA-TCATTTATTAGTAACAAT
7409933 TATTAAATCAT
1 TATTAAATCAT
7409944 GTGTATCAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
24 5 0.17
25 4 0.14
26 6 0.21
27 14 0.48
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (25 bp):
TATTAAATCATTTATTAGTAACAAT
Found at i:7410069 original size:24 final size:25
Alignment explanation
Indices: 7410027--7410077 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
7410017 ATTACATATC
7410027 AAATCATTAAATTAATAATAATTAGT
1 AAATCATT-AATTAATAATAATTAGT
* *
7410053 AAATCATT-ATTAGTAATCATTAGT
1 AAATCATTAATTAATAATAATTAGT
7410077 A
1 A
7410078 TTAATCATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 15 0.65
26 8 0.35
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (25 bp):
AAATCATTAATTAATAATAATTAGT
Found at i:7410083 original size:26 final size:24
Alignment explanation
Indices: 7410027--7410154 Score: 81
Period size: 22 Copynumber: 5.4 Consensus size: 24
7410017 ATTACATATC
7410027 AAATCATTAAATTAATAATAATTAGT
1 AAATCATT--ATTAATAATAATTAGT
* *
7410053 AAATCATTATTAGTAATCATTAGT
1 AAATCATTATTAATAATAATTAGT
* *
7410077 ATTAATCA-TATT-AT--TTATTAAT
1 A--AATCATTATTAATAATAATTAGT
* *
7410099 -AATCATTATTGAT-ATTATTAGT
1 AAATCATTATTAATAATAATTAGT
* *
7410121 -AATAATTATTAAATTAATAATTAAT
1 AAATCATTATT-AA-TAATAATTAGT
7410146 AAATCATTA
1 AAATCATTA
7410155 CTAAAGTATT
Statistics
Matches: 82, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
19 5 0.06
20 4 0.05
21 2 0.02
22 22 0.27
23 1 0.01
24 17 0.21
25 11 0.13
26 20 0.24
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.45
Consensus pattern (24 bp):
AAATCATTATTAATAATAATTAGT
Found at i:7410095 original size:16 final size:17
Alignment explanation
Indices: 7410059--7410108 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
7410049 TAGTAAATCA
*
7410059 TTATTAGTAATCATTA-
1 TTATTAATAATCATTAT
* *
7410075 GTATTAATCAT-ATTAT
1 TTATTAATAATCATTAT
7410091 TTATTAATAATCATTAT
1 TTATTAATAATCATTAT
7410108 T
1 T
7410109 GATATTATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 4 0.15
16 17 0.63
17 6 0.22
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (17 bp):
TTATTAATAATCATTAT
Found at i:7410130 original size:13 final size:13
Alignment explanation
Indices: 7410039--7410131 Score: 62
Period size: 13 Copynumber: 6.9 Consensus size: 13
7410029 ATCATTAAAT
*
7410039 TAATAATAATTAG
1 TAATAATTATTAG
*
7410052 TAAATCATTATTAG
1 T-AATAATTATTAG
* * *
7410066 TAATCATTAGTAT
1 TAATAATTATTAG
*
7410079 TAATCATATTATTTAT
1 TAAT-A-ATTA-TTAG
* *
7410095 TAATAATCATTAT
1 TAATAATTATTAG
*
7410108 TGAT-ATTATTAG
1 TAATAATTATTAG
7410120 TAATAATTATTA
1 TAATAATTATTA
7410132 AATTAATAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
12 9 0.14
13 29 0.45
14 14 0.22
15 5 0.08
16 7 0.11
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.47
Consensus pattern (13 bp):
TAATAATTATTAG
Found at i:7410140 original size:15 final size:15
Alignment explanation
Indices: 7410120--7410149 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7410110 ATATTATTAG
*
7410120 TAATAATTATTAAAT
1 TAATAATTAATAAAT
7410135 TAATAATTAATAAAT
1 TAATAATTAATAAAT
7410150 CATTACTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TAATAATTAATAAAT
Found at i:7410331 original size:28 final size:29
Alignment explanation
Indices: 7410294--7410351 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
7410284 GCATGAAGCA
*
7410294 TTCATTCAGTTCACAT-GAAAAGAGTTTTT
1 TTCATTCAGTTCACATAG-AAACAGTTTTT
7410323 TTCA-TCAGTTCACATAGAAACAGTTTTT
1 TTCATTCAGTTCACATAGAAACAGTTTTT
7410351 T
1 T
7410352 ACTGTTCACG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 22 0.81
29 5 0.19
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (29 bp):
TTCATTCAGTTCACATAGAAACAGTTTTT
Found at i:7411814 original size:39 final size:39
Alignment explanation
Indices: 7411770--7411858 Score: 126
Period size: 39 Copynumber: 2.3 Consensus size: 39
7411760 AAATTACATG
* *
7411770 GAAGACGCTGAGAGAC-CCAACGAGAATGGAAATTGTGTT
1 GAAGACGCCGAGA-ACTCCAACGAGAATGCAAATTGTGTT
* *
7411809 GAAGACGCCGAGACCTCCAACGTGAATGCAAATTGTGTT
1 GAAGACGCCGAGAACTCCAACGAGAATGCAAATTGTGTT
7411848 GAAGACGCCGA
1 GAAGACGCCGA
7411859 AAGATCATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.02
39 44 0.98
ACGTcount: A:0.34, C:0.20, G:0.29, T:0.17
Consensus pattern (39 bp):
GAAGACGCCGAGAACTCCAACGAGAATGCAAATTGTGTT
Found at i:7411893 original size:40 final size:39
Alignment explanation
Indices: 7411786--7411894 Score: 121
Period size: 39 Copynumber: 2.8 Consensus size: 39
7411776 GCTGAGAGAC
* * *
7411786 CCAACGAGAATGGAAATTGTGTTGAAGACGCCGAGACCT
1 CCAACGTGAATGGAAATTGTGTTGAAGACGCCGAAACAT
* *
7411825 CCAACGTGAATGCAAATTGTGTTGAAGACGCCGAAAGAT
1 CCAACGTGAATGGAAATTGTGTTGAAGACGCCGAAACAT
** *
7411864 -CATATTTTGTATGGAAATTGTGTTGAAGACG
1 CCA-A-CGTGAATGGAAATTGTGTTGAAGACG
7411895 TTGAGAGATC
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
38 2 0.03
39 35 0.59
40 22 0.37
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.25
Consensus pattern (39 bp):
CCAACGTGAATGGAAATTGTGTTGAAGACGCCGAAACAT
Found at i:7414089 original size:20 final size:20
Alignment explanation
Indices: 7414066--7414105 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7414056 CTAAGTCAAA
7414066 CTGCCACATTTTAGAGTTAC
1 CTGCCACATTTTAGAGTTAC
7414086 CTGCCACATTTTAGAGTTAC
1 CTGCCACATTTTAGAGTTAC
7414106 TTGCGAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (20 bp):
CTGCCACATTTTAGAGTTAC
Found at i:7414740 original size:33 final size:33
Alignment explanation
Indices: 7414698--7414795 Score: 120
Period size: 33 Copynumber: 3.2 Consensus size: 33
7414688 TGATCAAATT
7414698 ATATTGTTGTATTATAGAACATTCAGGATCTTA
1 ATATTGTTGTATTATAGAACATTCAGGATCTTA
* *
7414731 ATATTGTTGTATTATA-ATA-ATTAAAGA---T-
1 ATATTGTTGTATTATAGA-ACATTCAGGATCTTA
7414759 A-ATTGTTGTATTATAGAACATTCAGGATCTTA
1 ATATTGTTGTATTATAGAACATTCAGGATCTTA
7414791 ATATT
1 ATATT
7414796 TAAATTATCT
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
27 15 0.28
28 8 0.15
29 1 0.02
31 1 0.02
32 8 0.15
33 20 0.38
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (33 bp):
ATATTGTTGTATTATAGAACATTCAGGATCTTA
Found at i:7416043 original size:35 final size:35
Alignment explanation
Indices: 7415993--7416085 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 35
7415983 TTTGGGTTAA
*
7415993 GTTCTTCAGCAGTTCACTATGTTAGTTTTCTATGT
1 GTTCTTCAGCAGTTCACTATGTTAGCTTTCTATGT
* *
7416028 GTTCTTCAGCTGTTCACTATGTTAGCTTTCTGTGT
1 GTTCTTCAGCAGTTCACTATGTTAGCTTTCTATGT
*
7416063 GTTCTTCAGCAGTTCAGTATGTT
1 GTTCTTCAGCAGTTCACTATGTT
7416086 CTGTAAGAGA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.15, C:0.18, G:0.19, T:0.47
Consensus pattern (35 bp):
GTTCTTCAGCAGTTCACTATGTTAGCTTTCTATGT
Found at i:7417213 original size:42 final size:42
Alignment explanation
Indices: 7417149--7417235 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
7417139 CTTTATATCG
* *
7417149 TTTAAACATGTCTCGAGTTTAAGTCATTGTGTATGTAGAAAA
1 TTTAAACATATCTCGAGCTTAAGTCATTGTGTATGTAGAAAA
7417191 TTTAAACATATCTCGAGCTTAAGTCATTGTGTATGTAGAAAA
1 TTTAAACATATCTCGAGCTTAAGTCATTGTGTATGTAGAAAA
7417233 TTT
1 TTT
7417236 TCGTTTTGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.39
Consensus pattern (42 bp):
TTTAAACATATCTCGAGCTTAAGTCATTGTGTATGTAGAAAA
Found at i:7418311 original size:29 final size:29
Alignment explanation
Indices: 7418238--7418320 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
7418228 AACCCAACCA
* *
7418238 TAGGTCGCCATGCACCCCCAGCGACCTCC
1 TAGGTCGCCATGCACGCCCGGCGACCTCC
7418267 TAGGTCGCCATGCACGCCCGGCGACCTCC
1 TAGGTCGCCATGCACGCCCGGCGACCTCC
*
7418296 TAGGTCGCCATGCACGCCCGACGAC
1 TAGGTCGCCATGCACGCCCGGCGAC
7418321 ATCCCCTGCT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.17, C:0.45, G:0.25, T:0.13
Consensus pattern (29 bp):
TAGGTCGCCATGCACGCCCGGCGACCTCC
Found at i:7418514 original size:27 final size:27
Alignment explanation
Indices: 7418476--7418529 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
7418466 CAACGGCTCG
7418476 TGATCCTTCAATTATTGGTGCATGGCA
1 TGATCCTTCAATTATTGGTGCATGGCA
*
7418503 TGATTCTTCAATTATTGGTGCATGGCA
1 TGATCCTTCAATTATTGGTGCATGGCA
7418530 GCCGACCCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (27 bp):
TGATCCTTCAATTATTGGTGCATGGCA
Found at i:7418719 original size:11 final size:11
Alignment explanation
Indices: 7418703--7418729 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7418693 TTATTAGTTT
7418703 GTTAGTTTAGG
1 GTTAGTTTAGG
7418714 GTTAGTTTAGG
1 GTTAGTTTAGG
7418725 GTTAG
1 GTTAG
7418730 GGTAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (11 bp):
GTTAGTTTAGG
Found at i:7418931 original size:30 final size:30
Alignment explanation
Indices: 7418862--7418967 Score: 142
Period size: 30 Copynumber: 3.5 Consensus size: 30
7418852 TTTAGTTAAT
* *
7418862 TAGTTTTTTAGTAGTGAA-TTATAATTAAAAAA
1 TAGTTTATTAGT--TGAAGTTAT-ATTAAAGAA
* *
7418894 TATTTTATTAGTTTAAGTTATATTAAAGAA
1 TAGTTTATTAGTTGAAGTTATATTAAAGAA
7418924 TAGTTTATTAGTTGAAGTTATATTAAAGAA
1 TAGTTTATTAGTTGAAGTTATATTAAAGAA
7418954 TAGTTTATTAGTTG
1 TAGTTTATTAGTTG
7418968 TTTAAAGAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
30 53 0.79
31 4 0.06
32 10 0.15
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (30 bp):
TAGTTTATTAGTTGAAGTTATATTAAAGAA
Found at i:7418962 original size:15 final size:16
Alignment explanation
Indices: 7418909--7418963 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 16
7418899 TATTAGTTTA
7418909 AGTTATATTAAAGAAT
1 AGTTATATTAAAGAAT
**
7418925 AGTT-TATTAGTTG-A-
1 AGTTATATTA-AAGAAT
7418939 AGTTATATTAAAGAAT
1 AGTTATATTAAAGAAT
7418955 AGTT-TATTA
1 AGTTATATTA
7418964 GTTGTTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 9
0.70 0.09 0.20
Matches are distributed among these distances:
14 5 0.16
15 17 0.55
16 9 0.29
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.44
Consensus pattern (16 bp):
AGTTATATTAAAGAAT
Found at i:7419048 original size:15 final size:16
Alignment explanation
Indices: 7419020--7419051 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
7419010 GTTTGTTACT
7419020 TTATAAGTTTATTATA
1 TTATAAGTTTATTATA
7419036 TTATAAG-TTATTATA
1 TTATAAGTTTATTATA
7419051 T
1 T
7419052 AAAAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TTATAAGTTTATTATA
Found at i:7420275 original size:23 final size:23
Alignment explanation
Indices: 7420247--7420291 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7420237 TTTAATTATT
*
7420247 ATTTAAATTAACTATATTATTTG
1 ATTTAAATAAACTATATTATTTG
* *
7420270 ATTTAAATAAATTTTATTATTT
1 ATTTAAATAAACTATATTATTT
7420292 TTGTAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
ATTTAAATAAACTATATTATTTG
Found at i:7420291 original size:18 final size:20
Alignment explanation
Indices: 7420241--7420291 Score: 52
Period size: 23 Copynumber: 2.5 Consensus size: 20
7420231 GTTATTTTTA
7420241 ATTATTATTTAAATTAACTAT
1 ATTATTATTTAAATTAAC-AT
7420262 ATTATTTGATTTAAA-TAA-AT
1 ATTA-TT-ATTTAAATTAACAT
*
7420282 TTTATTATTT
1 ATTATTATTT
7420292 TTGTAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 4 0.15
19 2 0.07
20 5 0.19
21 4 0.15
22 5 0.19
23 7 0.26
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTATTATTTAAATTAACAT
Found at i:7421208 original size:14 final size:14
Alignment explanation
Indices: 7421189--7421236 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
7421179 TATTTATAAT
7421189 AAATCATTACTATC
1 AAATCATTACTATC
7421203 AAATCATTAC--T-
1 AAATCATTACTATC
*
7421214 AATTCATTACTATC
1 AAATCATTACTATC
7421228 AAATCATTA
1 AAATCATTA
7421237 AAAATTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 9 0.31
12 1 0.03
13 1 0.03
14 18 0.62
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (14 bp):
AAATCATTACTATC
Found at i:7421242 original size:25 final size:25
Alignment explanation
Indices: 7421192--7421242 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
7421182 TTATAATAAA
**
7421192 TCATTACTATCAAATCATTACTAAT
1 TCATTACTATCAAATCATTAAAAAT
7421217 TCATTACTATCAAATCATTAAAAAT
1 TCATTACTATCAAATCATTAAAAAT
7421242 T
1 T
7421243 AATAATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (25 bp):
TCATTACTATCAAATCATTAAAAAT
Found at i:7421268 original size:60 final size:60
Alignment explanation
Indices: 7421204--7421711 Score: 881
Period size: 60 Copynumber: 8.5 Consensus size: 60
7421194 ATTACTATCA
* * * *
7421204 AATCATTACTAATTCATTACTATCAAATCATTAAAAATTAATAATAATTTAATTATTACT
1 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
*
7421264 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTTCT
1 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
7421324 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
1 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
* * * * *
7421384 AATCATTATTAAATCATTACTATCAAATCATTAAAAAATAATAATAATTTTATTATTACT
1 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
*
7421444 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTTATTATTACT
1 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
*
7421504 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTTATTATTACT
1 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
7421564 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
1 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
* * *
7421624 AATCATTATTAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
1 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
7421684 AATCATTACTAAATCATTACTATCAAAT
1 AATCATTACTAAATCATTACTATCAAAT
7421712 AACACACTAA
Statistics
Matches: 428, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 428 1.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (60 bp):
AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
Found at i:7421909 original size:21 final size:21
Alignment explanation
Indices: 7421876--7421924 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7421866 AATATAATAT
*
7421876 ATAACTTAAACTAAGAAACTA
1 ATAACTTAAACTAACAAACTA
* *
7421897 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
7421918 ATTAACT
1 A-TAACT
7421925 AGATTTTAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:7422109 original size:6 final size:6
Alignment explanation
Indices: 7422079--7422121 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
7422069 AGTTTATATG
* * * *
7422079 TGCTTA TGCTTA TGCTCC TGGTTC TGCTTC TGCTTC TGCTTC T
1 TGCTTC TGCTTC TGCTTC TGCTTC TGCTTC TGCTTC TGCTTC T
7422122 ACCCTAAACC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.05, C:0.28, G:0.19, T:0.49
Consensus pattern (6 bp):
TGCTTC
Found at i:7422441 original size:13 final size:13
Alignment explanation
Indices: 7422423--7422449 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7422413 TGATGATGCA
7422423 GACCTACCATGTC
1 GACCTACCATGTC
7422436 GACCTACCATGTC
1 GACCTACCATGTC
7422449 G
1 G
7422450 CCGGGACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.19, T:0.22
Consensus pattern (13 bp):
GACCTACCATGTC
Found at i:7422471 original size:29 final size:29
Alignment explanation
Indices: 7422429--7422599 Score: 222
Period size: 29 Copynumber: 5.9 Consensus size: 29
7422419 TGCAGACCTA
*
7422429 CCATGTCGACCTACCATGTCGCCGGGACT
1 CCATGGCGACCTACCATGTCGCCGGGACT
7422458 CCATGGCGACCTACCATGTCGCCGGGACT
1 CCATGGCGACCTACCATGTCGCCGGGACT
* * *
7422487 CCATGGCAACCTACCATGTCGCCGGTGTCG
1 CCATGGCGACCTACCATGTCGCCGG-GACT
*
7422517 CCGGACTCGCGACCTACCATGTCGCCGGGACT
1 CC--A-TGGCGACCTACCATGTCGCCGGGACT
**
7422549 CCATGGCGACCTACCATGT---CAAGACT
1 CCATGGCGACCTACCATGTCGCCGGGACT
7422575 CCATGGCGACCTACCATGTCGCCGG
1 CCATGGCGACCTACCATGTCGCCGG
7422600 CCATGGCAAC
Statistics
Matches: 122, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
26 24 0.20
29 68 0.56
30 5 0.04
32 5 0.04
33 20 0.16
ACGTcount: A:0.18, C:0.38, G:0.26, T:0.18
Consensus pattern (29 bp):
CCATGGCGACCTACCATGTCGCCGGGACT
Found at i:7422544 original size:24 final size:27
Alignment explanation
Indices: 7422512--7422599 Score: 80
Period size: 26 Copynumber: 3.3 Consensus size: 27
7422502 ATGTCGCCGG
7422512 TGTCGCC-GGACT-C-GCGACCTACCA
1 TGTCGCCGGGACTCCAGCGACCTACCA
7422536 TGTCGCCGGGACTCCATGGCGACCTACCA
1 TGTCGCCGGGACTCCA--GCGACCTACCA
**
7422565 TGT---CAAGACTCCATGGCGACCTACCA
1 TGTCGCCGGGACTCCA--GCGACCTACCA
7422591 TGTCGCCGG
1 TGTCGCCGG
7422600 CCATGGCAAC
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
24 7 0.13
25 5 0.10
26 25 0.48
29 15 0.29
ACGTcount: A:0.18, C:0.38, G:0.26, T:0.18
Consensus pattern (27 bp):
TGTCGCCGGGACTCCAGCGACCTACCA
Found at i:7422581 original size:26 final size:26
Alignment explanation
Indices: 7422545--7422594 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
7422535 ATGTCGCCGG
7422545 GACTCCATGGCGACCTACCATGTCAA
1 GACTCCATGGCGACCTACCATGTCAA
7422571 GACTCCATGGCGACCTACCATGTC
1 GACTCCATGGCGACCTACCATGTC
7422595 GCCGGCCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.36, G:0.20, T:0.20
Consensus pattern (26 bp):
GACTCCATGGCGACCTACCATGTCAA
Found at i:7422837 original size:21 final size:21
Alignment explanation
Indices: 7422808--7422854 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
7422798 CCAAAGCAGA
*
7422808 GGGCAAAGAATGATGGACGCC
1 GGGCGAAGAATGATGGACGCC
7422829 GGGCGAAGAATGATGGACGCC
1 GGGCGAAGAATGATGGACGCC
7422850 GGGCG
1 GGGCG
7422855 TGCACGGCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.45, T:0.09
Consensus pattern (21 bp):
GGGCGAAGAATGATGGACGCC
Found at i:7422926 original size:29 final size:30
Alignment explanation
Indices: 7422844--7422927 Score: 127
Period size: 29 Copynumber: 2.9 Consensus size: 30
7422834 AAGAATGATG
* *
7422844 GACGCCGGGCGTGCACGGCGACCT-TATAG
1 GACGCCGGGCGTGCATGGCGACCTATATAA
7422873 GACGCCGGGCGTGCATGGCGACCTATA-AA
1 GACGCCGGGCGTGCATGGCGACCTATATAA
*
7422902 GACGTCGGGCGTGCATGGCGACCTAT
1 GACGCCGGGCGTGCATGGCGACCTAT
7422928 GCTGTCACTG
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
29 49 0.96
30 2 0.04
ACGTcount: A:0.19, C:0.29, G:0.37, T:0.15
Consensus pattern (30 bp):
GACGCCGGGCGTGCATGGCGACCTATATAA
Found at i:7423971 original size:2 final size:2
Alignment explanation
Indices: 7423964--7424035 Score: 144
Period size: 2 Copynumber: 36.0 Consensus size: 2
7423954 TCCCAAATAC
7423964 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7424006 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7424036 TTCTCAAAAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 70 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7443325 original size:2 final size:2
Alignment explanation
Indices: 7443320--7443347 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7443310 TATTCCTCTA
7443320 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7443348 TTTAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7447525 original size:21 final size:21
Alignment explanation
Indices: 7447500--7447572 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
7447490 GCTTATACGT
7447500 TGGTGTAGGGGCCTTGACTGG
1 TGGTGTAGGGGCCTTGACTGG
* *
7447521 TGGTGCTGGAGACGGTGGCTT-ATATGG
1 TGGTG-T--AG--GG-GCCTTGA-CTGG
7447548 TGGTGTAGGGGCCTTGACTGG
1 TGGTGTAGGGGCCTTGACTGG
7447569 TGGT
1 TGGT
7447573 ACTGGAGACG
Statistics
Matches: 40, Mismatches: 4, Indels: 16
0.67 0.07 0.27
Matches are distributed among these distances:
21 16 0.40
22 4 0.10
24 4 0.10
26 4 0.10
27 12 0.30
ACGTcount: A:0.11, C:0.12, G:0.47, T:0.30
Consensus pattern (21 bp):
TGGTGTAGGGGCCTTGACTGG
Found at i:7447593 original size:48 final size:48
Alignment explanation
Indices: 7447450--7447665 Score: 240
Period size: 48 Copynumber: 4.6 Consensus size: 48
7447440 TGCTGGAAAC
* * * * *
7447450 GGTGGTTTTGGGGACTTGACTGGTGGTGCTGGAGACGGTGGCTTATAC
1 GGTGGTGTAGGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATAT
* *
7447498 GTTGGTGTAGGGGCCTTGACTGGTGGTGCTGGAGACGGTGGCTTATAT
1 GGTGGTGTAGGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATAT
7447546 GGTGGTGTAGGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATAT
1 GGTGGTGTAGGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATAT
* * * * ** **
7447594 GG-CG-AT-GGAGCCTTGACTGGTGGTACTGGGGTTGGAAGCTTATAT
1 GGTGGTGTAGGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATAT
* * **
7447639 GGGGGAGTAGGGGCCTTGGTTGGTGGT
1 GGTGGTGTAGGGGCCTTGACTGGTGGT
7447666 GATACAGTGG
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
45 35 0.24
46 2 0.01
47 2 0.01
48 106 0.73
ACGTcount: A:0.13, C:0.12, G:0.45, T:0.30
Consensus pattern (48 bp):
GGTGGTGTAGGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATAT
Found at i:7447649 original size:93 final size:94
Alignment explanation
Indices: 7447459--7447665 Score: 247
Period size: 93 Copynumber: 2.2 Consensus size: 94
7447449 CGGTGGTTTT
* * * *
7447459 GGGGACTTGACTGGTGGTGCTGGAGACGGTGGCTTATACGTTGGTGTAGGGGCCTTGACTGGTGG
1 GGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATAC--TGGCGTAGGAGCCTTGACTGGTGG
* ** * *
7447524 TGCTGGAGACGGTGGCTTATATGGTGGTGTA
64 TACTGGAGACGGAAGCTTATATGGGGGAGTA
7447555 GGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATA-TGGCG-ATGGAGCCTTGACTGGTGGT
1 GGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATACTGGCGTA-GGAGCCTTGACTGGTGGT
* **
7447618 ACTGGGGTTGGAAGCTTATATGGGGGAGTA
65 ACTGGAGACGGAAGCTTATATGGGGGAGTA
**
7447648 GGGGCCTTGGTTGGTGGT
1 GGGGCCTTGACTGGTGGT
7447666 GATACAGTGG
Statistics
Matches: 96, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
92 1 0.01
93 59 0.61
96 36 0.38
ACGTcount: A:0.14, C:0.13, G:0.45, T:0.29
Consensus pattern (94 bp):
GGGGCCTTGACTGGTGGTACTGGAGACGGTGGCTTATACTGGCGTAGGAGCCTTGACTGGTGGTA
CTGGAGACGGAAGCTTATATGGGGGAGTA
Found at i:7449041 original size:13 final size:13
Alignment explanation
Indices: 7449009--7449048 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
7448999 AAATTATAAC
*
7449009 TAATAATATTAAA
1 TAATTATATTAAA
7449022 T-ATTATATTAAA
1 TAATTATATTAAA
7449034 TAATTATATTAAA
1 TAATTATATTAAA
7449047 TA
1 TA
7449049 TATTTATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TAATTATATTAAA
Found at i:7449722 original size:33 final size:34
Alignment explanation
Indices: 7449661--7449760 Score: 139
Period size: 33 Copynumber: 3.0 Consensus size: 34
7449651 AAATTTAATG
*
7449661 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
7449695 TTAAATTT-GAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
7449728 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
7449761 AACATTTATC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.50
34 28 0.50
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:7450359 original size:21 final size:21
Alignment explanation
Indices: 7450271--7450364 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
7450261 TATGGTATAA
*
7450271 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
*
7450292 AA-CCTGGCGGGCTAGGCATGT
1 AACCCT-GCGGGCTAGGAATGT
7450313 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
7450334 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
7450355 AACCCTGCGG
1 AACCCTGCGG
7450365 AGATGGCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 3 0.04
21 63 0.91
22 3 0.04
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:7450394 original size:21 final size:21
Alignment explanation
Indices: 7450368--7450415 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
7450358 CCTGCGGAGA
*
7450368 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
7450389 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
*
7450410 GGGCAT
1 TGGCAT
7450416 GTACCCCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.40, T:0.25
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:7452218 original size:34 final size:33
Alignment explanation
Indices: 7452136--7452239 Score: 100
Period size: 34 Copynumber: 3.1 Consensus size: 33
7452126 TAATAATTCT
* * * *
7452136 AAATAAATAATAATTATATAAATATTATTTTAATA
1 AAAT-AATAATATTTAAATAAATATTAATATAA-A
* *
7452171 AAAAAATAATATTTACATAAATATTAATATAAA
1 AAATAATAATATTTAAATAAATATTAATATAAA
* * *
7452204 AAATAATAACTATTTAAAAAAATACTAACATAAA
1 AAATAATAA-TATTTAAATAAATATTAATATAAA
7452238 AA
1 AA
7452240 TAAATTTCTT
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
33 9 0.16
34 46 0.79
35 3 0.05
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (33 bp):
AAATAATAATATTTAAATAAATATTAATATAAA
Found at i:7452946 original size:10 final size:10
Alignment explanation
Indices: 7452931--7452955 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7452921 AATAAAAATA
7452931 TTAATATTTT
1 TTAATATTTT
7452941 TTAATATTTT
1 TTAATATTTT
7452951 TTAAT
1 TTAAT
7452956 TATATTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTAATATTTT
Found at i:7460305 original size:2 final size:2
Alignment explanation
Indices: 7460298--7460328 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7460288 CATTGCTGGA
7460298 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7460329 AAGATATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7463678 original size:35 final size:35
Alignment explanation
Indices: 7463623--7463697 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
7463613 TCTAAACCCA
7463623 AAATTAAAGTATTTTAGAATTTAGGGTTTAAAATG
1 AAATTAAAGTATTTTAGAATTTAGGGTTTAAAATG
* * * * *
7463658 TAATTAAATTGTTTTGGAATTTAGGGTTTAGAATG
1 AAATTAAAGTATTTTAGAATTTAGGGTTTAAAATG
7463693 AAATT
1 AAATT
7463698 GAGAACTGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.43
Consensus pattern (35 bp):
AAATTAAAGTATTTTAGAATTTAGGGTTTAAAATG
Found at i:7464385 original size:16 final size:16
Alignment explanation
Indices: 7464364--7464398 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7464354 ATTTCTATTT
*
7464364 TTAATTTACCTTAAAA
1 TTAATTTACATTAAAA
7464380 TTAATTTACATTAAAA
1 TTAATTTACATTAAAA
7464396 TTA
1 TTA
7464399 GATATTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (16 bp):
TTAATTTACATTAAAA
Found at i:7464409 original size:26 final size:23
Alignment explanation
Indices: 7464380--7464433 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 23
7464370 TACCTTAAAA
7464380 TTAATTTAC-ATTAAAATTAGATATTT
1 TTAATTTACGA-T-AAATTA-A-ATTT
7464406 TTAATTTACGATAAATTAAATTT
1 TTAATTTACGATAAATTAAATTT
7464429 TTAAT
1 TTAAT
7464434 ACTTAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 9 0.33
24 1 0.04
25 6 0.22
26 10 0.37
27 1 0.04
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (23 bp):
TTAATTTACGATAAATTAAATTT
Found at i:7464493 original size:13 final size:13
Alignment explanation
Indices: 7464475--7464508 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7464465 ACTTAAACTT
7464475 TTATTTTTTAAAA
1 TTATTTTTTAAAA
*
7464488 TTA-TTTTTAAAG
1 TTATTTTTTAAAA
7464500 TTATTTTTT
1 TTATTTTTT
7464509 TTCATTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (13 bp):
TTATTTTTTAAAA
Found at i:7465303 original size:4 final size:4
Alignment explanation
Indices: 7465290--7465471 Score: 95
Period size: 4 Copynumber: 44.0 Consensus size: 4
7465280 TTTGATGATA
** *
7465290 ATTT -TTT ATTT ATTT ATTT -TAG ATTT GTTT ATTT ATTT CAAATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ---ATTT ATTT
* * ** *
7465339 ATTA ATTT ATTC ATTT -TGG ATTT ATTT ATTC ATTT CGATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT --ATTT ATTT ATTT
* ** *
7465388 ATTT ATTT ATCT A-TT ATTTT ATTT ATTT ATGCA ACTTAA ATTT ATTT
1 ATTT ATTT ATTT ATTT A-TTT ATTT ATTT AT-TT A-TT-T ATTT ATTT
* * *
7465435 GTTT ATTT AAATTT ATTT A-TA ATTT ATTT GTTT ATTT
1 ATTT ATTT --ATTT ATTT ATTT ATTT ATTT ATTT ATTT
7465472 GTTTGATTGT
Statistics
Matches: 134, Mismatches: 28, Indels: 32
0.69 0.14 0.16
Matches are distributed among these distances:
3 9 0.07
4 104 0.78
5 6 0.04
6 11 0.08
7 4 0.03
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (4 bp):
ATTT
Found at i:7465322 original size:19 final size:19
Alignment explanation
Indices: 7465294--7465346 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
7465284 ATGATAATTT
* *
7465294 TTTATTTATTTATTTTAGA
1 TTTATTTATTTATTTCAAA
*
7465313 TTTGTTTATTTATTTCAAA
1 TTTATTTATTTATTTCAAA
*
7465332 TTTATTTATTAATTT
1 TTTATTTATTTATTT
7465347 ATTCATTTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (19 bp):
TTTATTTATTTATTTCAAA
Found at i:7465460 original size:11 final size:10
Alignment explanation
Indices: 7465423--7465463 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
7465413 TTTATGCAAC
7465423 TTAAATTTAT
1 TTAAATTTAT
*
7465433 TT--GTTTAT
1 TTAAATTTAT
7465441 TTAAATTTAT
1 TTAAATTTAT
7465451 TTATAATTTAT
1 TTA-AATTTAT
7465462 TT
1 TT
7465464 GTTTATTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
8 7 0.27
10 10 0.38
11 9 0.35
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (10 bp):
TTAAATTTAT
Found at i:7472367 original size:40 final size:39
Alignment explanation
Indices: 7472323--7472422 Score: 155
Period size: 40 Copynumber: 2.5 Consensus size: 39
7472313 AAAATGGTGC
7472323 TCTAGGCGTCTTTAACACAATTTACATTCAAACATGGAGG
1 TCTAGGCGTCTTTAACACAATTTACATTCAAACAT-GAGG
* * *
7472363 TCTAGGCGTCTTTAACACAACTTCCATTCGAACATGAGG
1 TCTAGGCGTCTTTAACACAATTTACATTCAAACATGAGG
*
7472402 TATAGGCGTCTTTAACACAAT
1 TCTAGGCGTCTTTAACACAAT
7472423 GCATGTGTAC
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
39 23 0.42
40 32 0.58
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (39 bp):
TCTAGGCGTCTTTAACACAATTTACATTCAAACATGAGG
Found at i:7473057 original size:14 final size:14
Alignment explanation
Indices: 7473038--7473245 Score: 113
Period size: 14 Copynumber: 14.6 Consensus size: 14
7473028 AAATAATTAC
7473038 TTTAATGATTTAAA
1 TTTAATGATTTAAA
*
7473052 TTTAATGAATT-AA
1 TTTAATGATTTAAA
* *
7473065 TAATAATTATTTAAA
1 T-TTAATGATTTAAA
*
7473080 TTTAATAATAATTATTTAA
1 TTTAATGAT--TTA---AA
*
7473099 GTTTAATGATTTGAA
1 -TTTAATGATTTAAA
*
7473114 TTTAAT-A-ATAAA
1 TTTAATGATTTAAA
* * *
7473126 -ATAATTATTTAAG
1 TTTAATGATTTAAA
7473139 TTTAATGATTTAAA
1 TTTAATGATTTAAA
*
7473153 TTTAATG-TTTTAA
1 TTTAATGATTTAAA
* * * *
7473166 TAATAATTACTTAAC
1 T-TTAATGATTTAAA
*
7473181 TTTAATGATTTAAC
1 TTTAATGATTTAAA
7473195 TTTAATGATTT-AA
1 TTTAATGATTTAAA
* * * *
7473208 TAATAATTACTTAAC
1 T-TTAATGATTTAAA
*
7473223 TTTAATGATTTAAC
1 TTTAATGATTTAAA
7473237 TTTAATGAT
1 TTTAATGAT
7473246 ATAATAATAA
Statistics
Matches: 146, Mismatches: 33, Indels: 30
0.70 0.16 0.14
Matches are distributed among these distances:
11 4 0.03
12 4 0.03
13 15 0.10
14 97 0.66
15 11 0.08
16 3 0.02
18 2 0.01
19 2 0.01
20 8 0.05
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (14 bp):
TTTAATGATTTAAA
Found at i:7473129 original size:42 final size:41
Alignment explanation
Indices: 7473082--7473296 Score: 283
Period size: 42 Copynumber: 5.2 Consensus size: 41
7473072 TATTTAAATT
* *
7473082 TAATAATAATTATTTAAGTTTAATGATTTGAATTTAAT-A-A
1 TAATAATAATTACTTAACTTTAATGATTT-AATTTAATGATA
* * * *
7473122 TAA-AATAATTATTTAAGTTTAATGATTTAAATTTAATGTTT
1 TAATAATAATTACTTAACTTTAATGATTT-AATTTAATGATA
*
7473163 TAATAATAATTACTTAACTTTAATGATTTAACTTTAATGATT
1 TAATAATAATTACTTAACTTTAATGATTTAA-TTTAATGATA
7473205 TAATAATAATTACTTAACTTTAATGATTTAACTTTAATGATA
1 TAATAATAATTACTTAACTTTAATGATTTAA-TTTAATGATA
* *
7473247 TAATAATAATTACTTGACTTTAATTATTTATATTTAATGATA
1 TAATAATAATTACTTAACTTTAATGATTTA-ATTTAATGATA
7473289 TAATAATA
1 TAATAATA
7473297 CTAAATATAT
Statistics
Matches: 161, Mismatches: 9, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
39 33 0.20
40 3 0.02
41 5 0.03
42 119 0.74
43 1 0.01
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.48
Consensus pattern (41 bp):
TAATAATAATTACTTAACTTTAATGATTTAATTTAATGATA
Found at i:7473242 original size:28 final size:28
Alignment explanation
Indices: 7473127--7473287 Score: 116
Period size: 28 Copynumber: 5.8 Consensus size: 28
7473117 AATAATAAAA
* *
7473127 TAATTATTTAAGTTTAATGATTTAAATT
1 TAATTATTTAACTTTAATGATTTAACTT
* * *
7473155 TAATGT-TTTAA-TAATAATTACTTAACTT
1 TAAT-TATTTAACT-TTAATGATTTAACTT
* *
7473183 TAATGATTTAACTTTAATGATTTAA-TAA
1 TAATTATTTAACTTTAATGATTTAACT-T
*
7473211 TAATTACTTAACTTTAATGATTTAACTT
1 TAATTATTTAACTTTAATGATTTAACTT
* * * * * *
7473239 TAATGATATAA-TAATAATTACTTGACTT
1 TAATTATTTAACT-TTAATGATTTAACTT
7473267 TAATTATTTATA-TTTAATGAT
1 TAATTATTTA-ACTTTAATGAT
7473288 ATAATAATAC
Statistics
Matches: 101, Mismatches: 24, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
27 3 0.03
28 93 0.92
29 5 0.05
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.50
Consensus pattern (28 bp):
TAATTATTTAACTTTAATGATTTAACTT
Found at i:7475177 original size:42 final size:42
Alignment explanation
Indices: 7475128--7475380 Score: 203
Period size: 42 Copynumber: 5.8 Consensus size: 42
7475118 ATATATTTAG
* *
7475128 TATTATTATATCATTAAATATAAATTATTAAAGTCAAGTAAT
1 TATTATTATATCATTAAATATAAATCATTAAAGTTAAGTAAT
* * *
7475170 TATTATTAGATCATTAAAGTTAAGTAATTATTATTAAATCATTAAAGTTAAGT
1 TATTATTATATCATTAAA--T-A-TAA--ATCATTAAA--GTT-AAG-TAA-T
* *
7475223 AATTATTATTGAATCATTAAAGT-TAAATCGTTAAAGTTAAGTAAT
1 TATTATTA-T--ATCATTAAA-TATAAATCATTAAAGTTAAGTAAT
7475268 TATTATTGA-ATCATTAAA-ATTAAATCATTAAAGTTAAGTAAT
1 TATTATT-ATATCATTAAATA-TAAATCATTAAAGTTAAGTAAT
* * * *
7475310 TATTATTAAATCATTAAATTTAAATCATTAAACTTAAATAAT
1 TATTATTATATCATTAAATATAAATCATTAAAGTTAAGTAAT
*
7475352 TATTA-TAT-T-ATTAAATTTAAATCATTAAA
1 TATTATTATATCATTAAATATAAATCATTAAA
7475381 TTATTAAATT
Statistics
Matches: 177, Mismatches: 15, Indels: 41
0.76 0.06 0.18
Matches are distributed among these distances:
39 20 0.11
40 1 0.01
41 3 0.02
42 88 0.50
44 1 0.01
45 8 0.05
46 7 0.04
47 3 0.02
48 11 0.06
50 8 0.05
51 3 0.02
52 6 0.03
53 8 0.05
55 1 0.01
56 9 0.05
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.43
Consensus pattern (42 bp):
TATTATTATATCATTAAATATAAATCATTAAAGTTAAGTAAT
Found at i:7475214 original size:56 final size:56
Alignment explanation
Indices: 7475148--7475327 Score: 177
Period size: 56 Copynumber: 3.2 Consensus size: 56
7475138 TCATTAAATA
*
7475148 TAAATTATTAAAGTCAAGTAATTATTATTAGATCATTAAAGTTAAGTAATTATTAT
1 TAAATCATTAAAGTCAAGTAATTATTATTAGATCATTAAAGTTAAGTAATTATTAT
* * ** *
7475204 TAAATCATTAAAGTTAAGTAATTATTATT-GAATCATTAAAGTTAAATCGTTA-AAGT
1 TAAATCATTAAAGTCAAGTAATTATTATTAG-ATCATTAAAGTTAAGTAATTATTA-T
* * * * * * ** *
7475260 TAAGTAATTATTATTGAA-TCATTAAAATTAAATCATTAAAGTTAAGTAATTATTAT
1 TAAATCATTA-AAGTCAAGTAATTATTATTAGATCATTAAAGTTAAGTAATTATTAT
7475316 TAAATCATTAAA
1 TAAATCATTAAA
7475328 TTTAAATCAT
Statistics
Matches: 97, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
55 3 0.03
56 89 0.92
57 5 0.05
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.41
Consensus pattern (56 bp):
TAAATCATTAAAGTCAAGTAATTATTATTAGATCATTAAAGTTAAGTAATTATTAT
Found at i:7475298 original size:84 final size:81
Alignment explanation
Indices: 7475202--7475414 Score: 276
Period size: 84 Copynumber: 2.7 Consensus size: 81
7475192 AGTAATTATT
* * * *
7475202 ATTAAATCATTAAAGTTAAGTAATTATTATTGAATCATTAAAGTTAAATCGTTAAAGTTAAGTAA
1 ATTAAATCATTAAAGTTAAGTAATTATTATTAAATCATTAAAGTTAAATCATTAAACTTAAATAA
7475267 TTATTATTGAATCATTAAA
66 TTATTA-T--ATCATTAAA
*
7475286 ATTAAATCATTAAAGTTAAGTAATTATTATTAAATCATTAAATTTAAATCATTAAACTTAAATAA
1 ATTAAATCATTAAAGTTAAGTAATTATTATTAAATCATTAAAGTTAAATCATTAAACTTAAATAA
*
7475351 TTATTATATTATTAAA
66 TTATTATATCATTAAA
* * *
7475367 TTTAAATCATTAAA-TT-ATTAA--A-T-TTAAATCATTAAAGTTAAATAATTA
1 ATTAAATCATTAAAGTTAAGTAATTATTATTAAATCATTAAAGTTAAATCATTA
7475415 TTATTAATTC
Statistics
Matches: 119, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
75 23 0.19
76 1 0.01
77 1 0.01
79 4 0.03
80 2 0.02
81 21 0.18
83 1 0.01
84 66 0.55
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (81 bp):
ATTAAATCATTAAAGTTAAGTAATTATTATTAAATCATTAAAGTTAAATCATTAAACTTAAATAA
TTATTATATCATTAAA
Found at i:7475339 original size:22 final size:22
Alignment explanation
Indices: 7475314--7475444 Score: 118
Period size: 22 Copynumber: 6.3 Consensus size: 22
7475304 AGTAATTATT
7475314 ATTAAATCATTAAATTTAAATC
1 ATTAAATCATTAAATTTAAATC
*
7475336 ATTAAA-C-TTAAA--T-AATT
1 ATTAAATCATTAAATTTAAATC
* *
7475353 ATTATATTATTAAATTTAAATC
1 ATTAAATCATTAAATTTAAATC
*
7475375 ATTAAATTATTAAATTTAAATC
1 ATTAAATCATTAAATTTAAATC
* *
7475397 ATTAAA--GTTAAA--TAATTATT
1 ATTAAATCATTAAATTTAA--ATC
*
7475417 ATTAATTCATTAAATTTAAATC
1 ATTAAATCATTAAATTTAAATC
7475439 ATTAAA
1 ATTAAA
7475445 GTTAAGTTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
17 8 0.09
18 4 0.05
19 5 0.06
20 17 0.20
21 2 0.02
22 48 0.55
24 3 0.03
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (22 bp):
ATTAAATCATTAAATTTAAATC
Found at i:7475347 original size:14 final size:13
Alignment explanation
Indices: 7475132--7475449 Score: 146
Period size: 14 Copynumber: 23.4 Consensus size: 13
7475122 ATTTAGTATT
*
7475132 ATTATATCATTAA
1 ATTAAATCATTAA
*
7475145 ATATAAATTATTAA
1 AT-TAAATCATTAA
* * * *
7475159 AGTCAAGTAATTATT
1 A-TTAAATCATTA-A
*
7475174 ATTAGATCATTAA
1 ATTAAATCATTAA
* * *
7475187 AGTTAAGTAATTATT
1 A-TTAAATCATTA-A
7475202 ATTAAATCATTAA
1 ATTAAATCATTAA
* * *
7475215 AGTTAAGTAATTATT
1 A-TTAAATCATTA-A
*
7475230 ATTGAATCATTAA
1 ATTAAATCATTAA
*
7475243 AGTTAAATCGTTAA
1 A-TTAAATCATTAA
* * *
7475257 AGTTAAGTAATTATT
1 A-TTAAATCATTA-A
*
7475272 ATTGAATCATTAAA
1 ATTAAATCATT-AA
7475286 ATTAAATCATTAA
1 ATTAAATCATTAA
* * *
7475299 AGTTAAGTAATTATT
1 A-TTAAATCATTA-A
7475314 ATTAAATCATTAA
1 ATTAAATCATTAA
7475327 ATTTAAATCATTAA
1 A-TTAAATCATTAA
*
7475341 ACTTAAATAATT--
1 A-TTAAATCATTAA
* *
7475353 ATTATATTATTAA
1 ATTAAATCATTAA
7475366 ATTTAAATCATTAA
1 A-TTAAATCATTAA
7475380 A-T---T-ATTAA
1 ATTAAATCATTAA
7475388 ATTTAAATCATTAA
1 A-TTAAATCATTAA
* *
7475402 AGTTAAATAATTATT
1 A-TTAAATCATTA-A
*
7475417 ATTAATTCATTAA
1 ATTAAATCATTAA
7475430 ATTTAAATCATTAA
1 A-TTAAATCATTAA
7475444 AGTTAA
1 A-TTAA
7475450 GTTATTATTT
Statistics
Matches: 225, Mismatches: 56, Indels: 47
0.69 0.17 0.14
Matches are distributed among these distances:
8 6 0.03
9 1 0.00
10 1 0.00
11 8 0.04
12 2 0.01
13 12 0.05
14 187 0.83
15 8 0.04
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.43
Consensus pattern (13 bp):
ATTAAATCATTAA
Found at i:7475391 original size:61 final size:64
Alignment explanation
Indices: 7475314--7475444 Score: 223
Period size: 61 Copynumber: 2.1 Consensus size: 64
7475304 AGTAATTATT
7475314 ATTAAATCATTAAATTTAAATCATTAAACTTAAATAATTATTA-T-ATT-ATTAAATTTAAATC
1 ATTAAATCATTAAATTTAAATCATTAAACTTAAATAATTATTATTAATTCATTAAATTTAAATC
* *
7475375 ATTAAATTATTAAATTTAAATCATTAAAGTTAAATAATTATTATTAATTCATTAAATTTAAATC
1 ATTAAATCATTAAATTTAAATCATTAAACTTAAATAATTATTATTAATTCATTAAATTTAAATC
7475439 ATTAAA
1 ATTAAA
7475445 GTTAAGTTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
61 41 0.63
62 1 0.02
63 3 0.05
64 20 0.31
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (64 bp):
ATTAAATCATTAAATTTAAATCATTAAACTTAAATAATTATTATTAATTCATTAAATTTAAATC
Found at i:7475457 original size:42 final size:41
Alignment explanation
Indices: 7475379--7475458 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 41
7475369 TAAATCATTA
7475379 AATTATTAAATTTAAATCATTAAAGTTAAATAATTATTATT
1 AATTATTAAATTTAAATCATTAAAGTTAAATAATTATTATT
* *
7475420 AATTCATTAAATTTAAATCATTAAAGTTAAGTTATTATT
1 AATT-ATTAAATTTAAATCATTAAAGTTAAATAATTATT
7475459 TACTGAATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 4 0.11
42 32 0.89
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (41 bp):
AATTATTAAATTTAAATCATTAAAGTTAAATAATTATTATT
Found at i:7476132 original size:39 final size:40
Alignment explanation
Indices: 7476077--7476176 Score: 168
Period size: 40 Copynumber: 2.5 Consensus size: 40
7476067 GTACACATGC
7476077 ATTGTGTTAAAGACGCCTAGACCT-CATGTTCGAATG-AA
1 ATTGTGTTAAAGACGCCTAGACCTCCATGTTCGAATGCAA
*
7476115 AGTTGTGTTAAAGACGCCTAGACCTCCATGTTTGAATGCAA
1 A-TTGTGTTAAAGACGCCTAGACCTCCATGTTCGAATGCAA
7476156 ATTGTGTTAAAGACGCCTAGA
1 ATTGTGTTAAAGACGCCTAGA
7476177 GCACCATTTT
Statistics
Matches: 58, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
38 1 0.02
39 23 0.40
40 31 0.53
41 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (40 bp):
ATTGTGTTAAAGACGCCTAGACCTCCATGTTCGAATGCAA
Found at i:7476897 original size:19 final size:19
Alignment explanation
Indices: 7476875--7476942 Score: 111
Period size: 19 Copynumber: 3.6 Consensus size: 19
7476865 TTATTTATTA
7476875 ATTTATTCATTTTGGATTT
1 ATTTATTCATTTTGGATTT
7476894 ATTTATTCATTTTGGATTT
1 ATTTATTCATTTTGGATTT
*
7476913 ATTTATTCA-TTTCGATTT
1 ATTTATTCATTTTGGATTT
*
7476931 ATTTATTTATTT
1 ATTTATTCATTT
7476943 ATTCAAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.35
19 30 0.65
ACGTcount: A:0.22, C:0.06, G:0.07, T:0.65
Consensus pattern (19 bp):
ATTTATTCATTTTGGATTT
Found at i:7477006 original size:4 final size:4
Alignment explanation
Indices: 7476845--7476986 Score: 92
Period size: 4 Copynumber: 34.2 Consensus size: 4
7476835 CGACGATAAT
* * **
7476845 TTTA TTTA TTTA TTTCAAA TTTA TTTA TTAA TTTA TTCA TTT- TGGA TTTA
1 TTTA TTTA TTTA TTT---A TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* ** *
7476895 TTTA TTCA TTT- TGGA TTTA TTTA TTCA TTTCGA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT--A TTTA TTTA TTTA TTTA
* * *
7476944 TTCAAA TTTA TGTA TTTA TTTA TCTA -TTA TTTTA TTTA TTTA T
1 TT--TA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA T
7476987 GCAACTCAAA
Statistics
Matches: 105, Mismatches: 22, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
3 4 0.04
4 87 0.83
5 3 0.03
6 7 0.07
7 4 0.04
ACGTcount: A:0.26, C:0.05, G:0.04, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:7477014 original size:19 final size:19
Alignment explanation
Indices: 7476890--7477022 Score: 70
Period size: 19 Copynumber: 6.4 Consensus size: 19
7476880 TTCATTTTGG
* ***
7476890 ATTTATTTATTCATTTTGG
1 ATTTATTTATTTATTTCAA
* *
7476909 ATTTATTTATTCATTTC-G
1 ATTTATTTATTTATTTCAA
7476927 ATTTATTTATTTATTTATTCAA
1 ATTTATTTATTTA--T-TTCAA
*
7476949 ATTTATGTATTTATTTATCTATTA
1 ATTTATTTATTTA-TT-TC-A--A
* *
7476973 TTTTATTTATTTATGCAACTCAA
1 ATTTATTTATTTAT----TTCAA
7476996 ATTTATTTATTTATTTCAA
1 ATTTATTTATTTATTTCAA
7477015 ATTTATTT
1 ATTTATTT
7477023 GTTTGTTTGT
Statistics
Matches: 93, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
18 13 0.14
19 28 0.30
20 2 0.02
21 7 0.08
22 13 0.14
23 15 0.16
24 12 0.13
25 1 0.01
26 2 0.02
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.62
Consensus pattern (19 bp):
ATTTATTTATTTATTTCAA
Found at i:7477021 original size:47 final size:42
Alignment explanation
Indices: 7476843--7477022 Score: 120
Period size: 47 Copynumber: 4.1 Consensus size: 42
7476833 TTCGACGATA
* *
7476843 ATTTTATTTATTTATTTCAAATTTATTTATTAATTT---ATTC
1 ATTTTATTTATTTA-TTCAAATTTATTTATTTATTTCAAATTT
* * *
7476883 ATTTTGGATTTATTTATTCATTTTGGATTTATTTATTCATTTC-GATTT
1 ATTTT--ATTTATTTATTCA-----AATTTATTTATTTATTTCAAATTT
* **
7476931 A-TTTATTTATTTATTCAAATTTATGTATTTATTT-ATCTATT
1 ATTTTATTTATTTATTCAAATTTATTTATTTATTTCAAAT-TT
7476972 ATTTTATTTATTTATGCAACTCAAATTTATTTATTTATTTCAAATTT
1 ATTTTATTTATTTAT-----TCAAATTTATTTATTTATTTCAAATTT
7477019 ATTT
1 ATTT
7477023 GTTTGTTTGT
Statistics
Matches: 111, Mismatches: 11, Indels: 29
0.74 0.07 0.19
Matches are distributed among these distances:
40 20 0.18
41 7 0.06
42 22 0.20
45 13 0.12
46 15 0.14
47 28 0.25
48 6 0.05
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (42 bp):
ATTTTATTTATTTATTCAAATTTATTTATTTATTTCAAATTT
Found at i:7486194 original size:23 final size:23
Alignment explanation
Indices: 7486168--7486212 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7486158 CACCACAGCT
*
7486168 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* *
7486191 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
7486213 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:7486381 original size:150 final size:149
Alignment explanation
Indices: 7486180--7486495 Score: 535
Period size: 150 Copynumber: 2.1 Consensus size: 149
7486170 TATAAATGCA
*
7486180 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATATAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAA
* * *
7486244 TTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTTTCCAAGACTTCACACATGT
65 TTCCTTAAGAATCATATACATATACTAAGGATCAAGCATGCGTCTTT-CAAGACTTCACACATGT
* *
7486309 TCCACAGAATATATATATATC
129 TCCAAAGAATATACATATATC
*
7486330 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCTATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
7486395 TCCTTAAGAATCATATACATATACTAAGGATCAAGCATGCGTCTTTCAAGACTTCACACATGTTC
66 TCCTTAAGAATCATATACATATACTAAGGATCAAGCATGCGTCTTTCAAGACTTCACACATGTTC
*
7486460 CAAAGAATATACATATGTC
131 CAAAGAATATACATATATC
7486479 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
7486496 CCCTCTACCC
Statistics
Matches: 157, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
149 53 0.34
150 104 0.66
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (149 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATACTAAGGATCAAGCATGCGTCTTTCAAGACTTCACACATGTTC
CAAAGAATATACATATATC
Done.