Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8415618
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 40
Found at i:7779374 original size:20 final size:20
Alignment explanation
Indices: 7779312--7779561 Score: 247
Period size: 20 Copynumber: 12.5 Consensus size: 20
7779302 CGATTTTCCA
* ** *
7779312 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
7779332 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
7779352 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
7779372 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
7779392 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
7779412 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
7779432 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
7779452 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
7779472 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
7779492 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
*
7779512 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
7779532 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
7779552 AAATCACAAC
1 AAATCGCAAC
7779562 ACTGAAATTT
Statistics
Matches: 196, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
19 2 0.01
20 192 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:7781049 original size:33 final size:32
Alignment explanation
Indices: 7781012--7781156 Score: 132
Period size: 33 Copynumber: 4.2 Consensus size: 32
7781002 CGGAAATTAC
7781012 AATCGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAACGAGA-AATCGCAATGCGAAATGAA
* * * * *
7781045 AATCGCAATGCGAAAT-GAAAAT-CGCAACGAGA
1 AATCGCAACGAGAAATCG-CAATGCGAAATGA-A
7781077 GAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 -AATCGCAA--CG--A-G-AAATCGCAATGCGAAATGAA
7781116 AATCGCAACGAGATAATCGCAATGCGAAATGAA
1 AATCGCAACGAGA-AATCGCAATGCGAAATGAA
7781149 AATCGCAA
1 AATCGCAA
7781157 TGCGAAATGA
Statistics
Matches: 90, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
31 7 0.08
32 8 0.09
33 47 0.52
34 1 0.01
35 1 0.01
36 2 0.02
38 9 0.10
39 8 0.09
40 7 0.08
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (32 bp):
AATCGCAACGAGAAATCGCAATGCGAAATGAA
Found at i:7781050 original size:19 final size:19
Alignment explanation
Indices: 7781026--7781180 Score: 213
Period size: 19 Copynumber: 8.7 Consensus size: 19
7781016 GCAACGAGAG
7781026 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7781045 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7781064 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
7781078 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7781097 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7781116 AATCGCAA--CG--A-GAT
1 AATCGCAATGCGAAATGAA
7781130 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7781149 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7781168 AATCGCATTGCGA
1 AATCGCAATGCGA
7781181 TTCTCTCGTT
Statistics
Matches: 121, Mismatches: 5, Indels: 20
0.83 0.03 0.14
Matches are distributed among these distances:
14 20 0.17
15 2 0.02
16 4 0.03
17 4 0.03
18 2 0.02
19 89 0.74
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:7781072 original size:52 final size:52
Alignment explanation
Indices: 7781012--7781174 Score: 317
Period size: 52 Copynumber: 3.1 Consensus size: 52
7781002 CGGAAATTAC
7781012 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
7781064 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
7781116 AATCGCAACGAGATAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
7781168 AATCGCA
1 AATCGCA
7781175 TTGCGATTCT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 110 1.00
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (52 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:7781110 original size:71 final size:71
Alignment explanation
Indices: 7781026--7781180 Score: 208
Period size: 71 Copynumber: 2.2 Consensus size: 71
7781016 GCAACGAGAG
* * *
7781026 AATCGCAATGCGAAATGAAAATCGCAATGCGA-AAT-GAAAAT-CGCAACGAGAGAATCGCAATG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCG-AAATGCGAAACGA-A-AATCGCAATG
7781088 CGAAATGAA
63 CGAAATGAA
* *
7781097 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATGAAAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGAAATGCGAAACGAAAATCGCAATGCGA
7781162 AATGAA
66 AATGAA
*
7781168 AATCGCATTGCGA
1 AATCGCAATGCGA
7781181 TTCTCTCGTT
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
71 61 0.81
72 7 0.09
73 7 0.09
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.15
Consensus pattern (71 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGAAATGCGAAACGAAAATCGCAATGCGA
AATGAA
Found at i:7781283 original size:52 final size:53
Alignment explanation
Indices: 7781170--7781286 Score: 227
Period size: 53 Copynumber: 2.2 Consensus size: 53
7781160 GAAATGAAAA
7781170 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
7781223 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
7781275 TCGCATTGCGAT
1 TCGCATTGCGAT
7781287 AGTCATTTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 30 0.47
53 34 0.53
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:7781294 original size:19 final size:19
Alignment explanation
Indices: 7781189--7781286 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
7781179 GATTCTCTCG
7781189 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
7781209 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
7781228 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
7781242 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
7781261 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
7781280 TTGCGAT
1 TTGCGAT
7781287 AGTCATTTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:7781412 original size:14 final size:14
Alignment explanation
Indices: 7781393--7781429 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
7781383 CATCAATTAC
7781393 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
7781407 ACAAATCATCTTTT
1 ACAAATCAACTTTT
7781421 ACAAATCAA
1 ACAAATCAA
7781430 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:7783394 original size:19 final size:19
Alignment explanation
Indices: 7783354--7783488 Score: 110
Period size: 19 Copynumber: 7.6 Consensus size: 19
7783344 TAGTTTACTT
* *
7783354 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
7783374 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
7783393 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
7783412 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
7783426 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
7783445 TCGCAA--CG-AA--AGAA
1 TCGCAACGCGAAACCAAAA
**
7783459 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
7783478 TCGCAATGCGA
1 TCGCAACGCGA
7783489 TTTTGGTTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 18 0.19
15 1 0.01
16 6 0.06
17 6 0.06
18 1 0.01
19 50 0.53
20 13 0.14
ACGTcount: A:0.46, C:0.26, G:0.19, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:7783429 original size:14 final size:14
Alignment explanation
Indices: 7783410--7783466 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
7783400 GCGAAATGAA
7783410 AATCGCAACGACAG
1 AATCGCAACGACAG
*
7783424 AATCGCAACGCGAAACCAA
1 AATCGCAA--CG--A-CAG
*
7783443 AATCGCAACGAAAG
1 AATCGCAACGACAG
7783457 AATCGCAACG
1 AATCGCAACG
7783467 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.46, C:0.28, G:0.19, T:0.07
Consensus pattern (14 bp):
AATCGCAACGACAG
Found at i:7783433 original size:33 final size:33
Alignment explanation
Indices: 7783391--7783483 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
7783381 GCGAAACCAA
*
7783391 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
**
7783424 AATCGCAACGCGAAACCAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
7783457 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
7783484 TGCGATTTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.47, C:0.25, G:0.19, T:0.09
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:7783480 original size:52 final size:54
Alignment explanation
Indices: 7783354--7783488 Score: 149
Period size: 52 Copynumber: 2.5 Consensus size: 54
7783344 TAGTTTACTT
*
7783354 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAATGAAAA
1 TCGCAAC-CGAAA-TGAAAATCGCAACGCGAAACCAAAATCGCAAC-CGAAATG-AAA
*
7783412 TCGCAA-CGACA-G--AATCGCAACGCGAAACCAAAATCGCAA-CGAAA-G-AA
1 TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
*
7783459 TCGCAACGCGAAATGAAAATCGCAATGCGA
1 TCGCAAC-CGAAATGAAAATCGCAACGCGA
7783489 TTTTGGTTTC
Statistics
Matches: 68, Mismatches: 4, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
47 8 0.12
49 5 0.07
50 6 0.09
52 39 0.57
56 4 0.06
58 6 0.09
ACGTcount: A:0.46, C:0.26, G:0.19, T:0.10
Consensus pattern (54 bp):
TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
Found at i:7783500 original size:19 final size:19
Alignment explanation
Indices: 7783484--7783598 Score: 141
Period size: 19 Copynumber: 6.3 Consensus size: 19
7783474 AAAATCGCAA
7783484 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
7783503 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
7783517 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
**
7783536 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
7783555 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
7783574 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
7783594 TGCGA
1 TGCGA
7783599 AAGTAAACTA
Statistics
Matches: 82, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
14 11 0.13
15 1 0.01
16 1 0.01
17 1 0.01
18 1 0.01
19 54 0.66
20 13 0.16
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:7783762 original size:93 final size:93
Alignment explanation
Indices: 7783646--7784114 Score: 922
Period size: 93 Copynumber: 5.1 Consensus size: 93
7783636 ATGGATTGCA
7783646 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
7783710 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7783738 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
7783803 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7783831 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
7783896 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7783924 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
7783989 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7784017 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
7784082 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7784110 TTACT
1 TTACT
7784115 AAGCAATCTA
Statistics
Matches: 375, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
92 4 0.01
93 371 0.99
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:7785834 original size:14 final size:14
Alignment explanation
Indices: 7785815--7785904 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
7785805 TTGAAATGAA
7785815 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
7785829 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
7785848 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
7785862 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
7785881 AATCGCAACGAGAG
1 AATCGCAACGAGAG
7785895 AATCGCAACG
1 AATCGCAACG
7785905 CGAAATGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 20 0.32
ACGTcount: A:0.43, C:0.23, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:7785852 original size:33 final size:33
Alignment explanation
Indices: 7785807--7785921 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
7785797 TCTTTGGGTT
7785807 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
7785840 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7785873 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7785906 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
7785922 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:7785853 original size:19 final size:19
Alignment explanation
Indices: 7785829--7785926 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
7785819 GCAACGAGAG
*
7785829 AATCGCAACGCGAAATGAC
1 AATCGCAACGCGAAATGAA
*
7785848 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
7785862 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
7785881 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
7785895 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
7785914 AATCGCAATGCGA
1 AATCGCAACGCGA
7785927 TTTTGGTTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
14 20 0.31
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 32 0.50
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:7785957 original size:14 final size:14
Alignment explanation
Indices: 7785938--7785994 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
7785928 TTTGGTTTCG
7785938 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7785952 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
7785971 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
7785985 CGTTGCGATT
1 CGTTGCGATT
7785995 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7785970 original size:33 final size:33
Alignment explanation
Indices: 7785922--7786002 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
7785912 AAAATCGCAA
**
7785922 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
7785955 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
7785988 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
7786003 TCTCGTTGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:7786005 original size:21 final size:21
Alignment explanation
Indices: 7785979--7786054 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
7785969 CGCGTTGCGA
7785979 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
7786000 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
*
7786020 TTCTCTCGTTACGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
7786041 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
7786055 CTCTTCTGCA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.13, C:0.25, G:0.16, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:7786035 original size:41 final size:41
Alignment explanation
Indices: 7785978--7786055 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
7785968 TCGCGTTGCG
* *
7785978 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTACGATTTTCATTTATCTCGTTGCGACAGTC
7786019 ATTCTCTCGTTACGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTACGATTTTCATTTATCTCGTTGCGAC
7786056 TCTTCTGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.14, C:0.26, G:0.15, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTACGATTTTCATTTATCTCGTTGCGACAGTC
Found at i:7786040 original size:20 final size:20
Alignment explanation
Indices: 7785945--7786054 Score: 99
Period size: 21 Copynumber: 5.8 Consensus size: 20
7785935 TCGCGTTGCG
7785945 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
7785965 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
7785978 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
***
7785998 ATTTCTCTCGTTGCGACAGTC
1 A-TTCTCTCGTTGCGATTTTC
*
7786019 ATTCTCTCGTTACGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
7786039 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
7786055 CTCTTCTGCA
Statistics
Matches: 70, Mismatches: 11, Indels: 17
0.71 0.11 0.17
Matches are distributed among these distances:
13 3 0.04
14 9 0.13
19 9 0.13
20 20 0.29
21 29 0.41
ACGTcount: A:0.13, C:0.25, G:0.17, T:0.45
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:7786405 original size:22 final size:22
Alignment explanation
Indices: 7786353--7786407 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
7786343 TGGTTGTGAG
**
7786353 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
7786375 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
7786397 GGATTTCTTCG
1 GGATTTCTTCG
7786408 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:7786579 original size:20 final size:20
Alignment explanation
Indices: 7786554--7786747 Score: 203
Period size: 20 Copynumber: 9.7 Consensus size: 20
7786544 CTTTAAATAT
*
7786554 CGCGTTGCGATTTACGGATG
1 CGCGTTGCGATTTACGGATA
* *
7786574 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
7786596 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
7786615 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
7786635 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
7786655 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
7786675 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* * *
7786695 CGCGTTACGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
7786715 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
7786735 CGCGTTGCGATTT
1 CGCGTTGCGATTT
7786748 TGGAAAATCG
Statistics
Matches: 144, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
19 2 0.01
20 126 0.88
21 15 0.10
22 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:7786741 original size:60 final size:60
Alignment explanation
Indices: 7786554--7786747 Score: 235
Period size: 60 Copynumber: 3.2 Consensus size: 60
7786544 CTTTAAATAT
* **
7786554 CGCGTTGCGATTTACGGATGCGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
7786615 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * * ** *
7786675 CACGTTGCGATTTACGGATACGCGTTACGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
7786735 CGCGTTGCGATTT
1 CGCGTTGCGATTT
7786748 TGGAAAATCG
Statistics
Matches: 110, Mismatches: 23, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
60 83 0.75
61 27 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:7786764 original size:21 final size:21
Alignment explanation
Indices: 7786734--7786816 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
7786724 ATTTTCATAT
*
7786734 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
7786755 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
7786776 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
7786797 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
7786817 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:7786807 original size:42 final size:43
Alignment explanation
Indices: 7786714--7786812 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
7786704 ATTTATGTGT
* *
7786714 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
7786755 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
7786797 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
7786813 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:7787008 original size:27 final size:24
Alignment explanation
Indices: 7786977--7787056 Score: 71
Period size: 24 Copynumber: 3.4 Consensus size: 24
7786967 AAATAATTGG
7786977 ATGAAACAAATATATAAAAAAATGAA
1 ATGAAA-AAATATATAAAAAAATG-A
* *
7787003 ATTGAATAAA-ATA-AAATAAATGA
1 A-TGAAAAAATATATAAAAAAATGA
7787026 A-GAAAAACATATATAAAAAAA-GA
1 ATGAAAAA-ATATATAAAAAAATGA
7787049 AT-AAAAAA
1 ATGAAAAAA
7787057 GGTAAAGTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
21 5 0.11
22 2 0.04
23 13 0.29
24 14 0.31
25 3 0.07
26 4 0.09
27 4 0.09
ACGTcount: A:0.71, C:0.03, G:0.07, T:0.19
Consensus pattern (24 bp):
ATGAAAAAATATATAAAAAAATGA
Found at i:7787154 original size:17 final size:18
Alignment explanation
Indices: 7787120--7787161 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
7787110 AACATAATGA
*
7787120 AAAT-AAATAAATAGTAT
1 AAATAAAATAAATAATAT
7787137 AAATAAAATAAA-AATAT
1 AAATAAAATAAATAATAT
*
7787154 ATATAAAA
1 AAATAAAA
7787162 ATATAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (18 bp):
AAATAAAATAAATAATAT
Found at i:7787189 original size:22 final size:22
Alignment explanation
Indices: 7787121--7787191 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
7787111 ACATAATGAA
*
7787121 AATAAATAA-ATA-GTATAAATAA
1 AATAAA-AATATATGTAT-AATAT
* *
7787143 AATAAAAATATATATA-AAAAT
1 AATAAAAATATATGTATAATAT
*
7787164 -ATAAAAATGTATGTATAATAT
1 AATAAAAATATATGTATAATAT
7787185 AATAAAA
1 AATAAAA
7787192 TACTAAATAG
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
20 13 0.33
21 9 0.23
22 15 0.38
23 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (22 bp):
AATAAAAATATATGTATAATAT
Found at i:7787371 original size:2 final size:2
Alignment explanation
Indices: 7787366--7787390 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7787356 ATAAAAAATA
7787366 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7787391 ATAATAGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7787459 original size:23 final size:23
Alignment explanation
Indices: 7787425--7787471 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
7787415 ACGCAAAGAA
7787425 AAATGAAAAAAATTATAA-TAAAT
1 AAATGAAAAAAA-TATAATTAAAT
7787448 AAAT-AAATAAAATATAATTAAAT
1 AAATGAAA-AAAATATAATTAAAT
7787471 A
1 A
7787472 TATATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (23 bp):
AAATGAAAAAAATATAATTAAAT
Found at i:7787977 original size:37 final size:37
Alignment explanation
Indices: 7787884--7787985 Score: 141
Period size: 37 Copynumber: 2.8 Consensus size: 37
7787874 ATACTTGTGG
* * ** * *
7787884 ATCCTATCTTTAGGAGTTTAAATAATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAACTCT
*
7787921 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAACTCT
7787958 ATCCTATTTTTAGGAGTTTGAATCCTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAG
7787986 TAGGACGAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAACTCT
Found at i:7788930 original size:106 final size:106
Alignment explanation
Indices: 7788731--7789907 Score: 1784
Period size: 106 Copynumber: 11.1 Consensus size: 106
7788721 GTAAGTAGCA
* * * * * * *
7788731 TTGTTTCGAGTCCAATATCCTCCGTCGTAAAGTTAAAATTGGCTCTGGAATCGGGAAATTGTTTG
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
* * *
7788796 TTGACAACCAGCCGTCCC-TCTGTTGTGAAGTTGAACTTGTG
66 TTGACAACCAGCGGTCCCTTC-GTCGTGAAGTTGAACTTGCG
* *
7788837 TTGTCTCGAGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTG
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
7788902 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
* *
7788943 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTATGAAATTGGGAAGTTGTTTG
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
7789008 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
* * *
7789049 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTG
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
7789114 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
* * *
7789155 TTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTG
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
* *
7789220 TTGACAACCAGCGGTCCCTTCATCCTGAAGTTGAACTTGCG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
* * * ** *
7789261 TTGTCTGGAGTCCAATATCTTTCGCTGTGAAGTTGAAATTGGCTCCAAAATTGGGAAATTGTTTA
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
**
7789326 TTGACAACCAATGGTCCCTTCGTCGTGAAGTTGAACTTGCG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
* * **
7789367 TTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAAATT-ATAAAGTTGTTT
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAA-TTGTTT
* *
7789431 ATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCA
65 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
* * *
7789473 TTGTCTCGAGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTA
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
* *
7789538 TTGACAACCAGCGGTCCCTTCGTCATGAAGTTGAACTTGTG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
* * * *
7789579 TTGTCTTGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTA
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
7789644 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
* * *
7789685 TTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTG
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
*
7789750 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTG
66 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
* * ** *
7789791 TTGTCTGGAGTCCAATATCATTCCCTGTGAAGTTGAAATTGGCTCTG-AATTTGGAAAGTTGTTT
1 TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAA-TTGTTT
* * * *
7789855 GTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTG
65 GTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
7789897 TTGTCTCGAGT
1 TTGTCTCGAGT
7789908 GGCACGATAT
Statistics
Matches: 994, Mismatches: 73, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
105 10 0.01
106 978 0.98
107 6 0.01
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (106 bp):
TTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTG
TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCG
Found at i:7790879 original size:22 final size:22
Alignment explanation
Indices: 7790853--7790907 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
7790843 TTGTGTTTGG
*
7790853 TCAAAGGTTTGGCATTTGATGT
1 TCAAAGGTTTGGCATTTGATGC
*
7790875 TCAAAGATTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
7790897 TCAAAGGTTTG
1 TCAAAGGTTTG
7790908 ATGGGGTAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.38
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:7791546 original size:14 final size:14
Alignment explanation
Indices: 7791527--7791574 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
7791517 TTCTTTTTGA
7791527 TTTTTGTTCTTTCT
1 TTTTTGTTCTTTCT
*
7791541 TTTTTGTTTTCTTCT
1 TTTTTGTTCT-TTCT
7791556 TTTTTGCTTCTTT-T
1 TTTTTG-TTCTTTCT
7791570 TTTTT
1 TTTTT
7791575 ATTTTTGCCC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 15 0.50
15 12 0.40
16 3 0.10
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.81
Consensus pattern (14 bp):
TTTTTGTTCTTTCT
Found at i:7794985 original size:19 final size:21
Alignment explanation
Indices: 7794955--7794993 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7794945 TGCAGATGAT
7794955 GGAAATAAAAAT-AAAAGAGA
1 GGAAATAAAAATGAAAAGAGA
7794975 GGAAA-AAAAATGAAAAGAG
1 GGAAATAAAAATGAAAAGAG
7794994 TTAGTAAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.08
Consensus pattern (21 bp):
GGAAATAAAAATGAAAAGAGA
Found at i:7796312 original size:13 final size:13
Alignment explanation
Indices: 7796296--7796336 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7796286 CATAATGAAA
*
7796296 ATAAATAAATAGT
1 ATAAATAAATAAT
7796309 ATAAATAAAATAAT
1 ATAAAT-AAATAAT
7796323 A-AAATAAA-AAT
1 ATAAATAAATAAT
7796334 ATA
1 ATA
7796337 TAAAAATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 4 0.16
12 4 0.16
13 10 0.40
14 7 0.28
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (13 bp):
ATAAATAAATAAT
Found at i:7796543 original size:2 final size:2
Alignment explanation
Indices: 7796538--7796570 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7796528 AAAAATAATA
*
7796538 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7796571 ATAGGAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7796646 original size:2 final size:2
Alignment explanation
Indices: 7796641--7796675 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7796631 TTATAATTAA
7796641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7796676 AATAATAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7797120 original size:37 final size:37
Alignment explanation
Indices: 7797079--7797163 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 37
7797069 GGATCATATC
* * *
7797079 TTTAGGAGTTTAAATAATAGTAGAACTCTATCTTATT
1 TTTAGGAGTTTAAATAATAGCACAACTCTATCCTATT
* ** *
7797116 TTTAGGAGTTTGAATCCTAGCACAATTCTATCCTATT
1 TTTAGGAGTTTAAATAATAGCACAACTCTATCCTATT
7797153 TTTAGGAGTTT
1 TTTAGGAGTTT
7797164 GAATCCTAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (37 bp):
TTTAGGAGTTTAAATAATAGCACAACTCTATCCTATT
Found at i:7802421 original size:23 final size:24
Alignment explanation
Indices: 7802377--7802429 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
7802367 CCACTAGGGG
7802377 CTATGAAATTTGTCCCGAAGGACCA
1 CTATGAAA-TTGTCCCGAAGGACCA
*
7802402 CTATGAAA-TGTCCCGGAGGACCA
1 CTATGAAATTGTCCCGAAGGACCA
7802425 CTATG
1 CTATG
7802430 TCCCGAAGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 19 0.70
25 8 0.30
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (24 bp):
CTATGAAATTGTCCCGAAGGACCA
Found at i:7803078 original size:2 final size:2
Alignment explanation
Indices: 7803025--7803059 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7803015 ACTTATAAAC
7803025 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7803060 CTTCTATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7807418 original size:23 final size:23
Alignment explanation
Indices: 7807378--7807442 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
7807368 TATGAAATTT
* * *
7807378 GTCCCGAAGGACCGCTATGAAAT
1 GTCCCGGAGGACCACTATGAAAG
**
7807401 GTTTCGGAGGACCACTATGAAAG
1 GTCCCGGAGGACCACTATGAAAG
7807424 GTCCCGGAGGACCACTATG
1 GTCCCGGAGGACCACTATG
7807443 TCCCGAAGGA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.28, C:0.25, G:0.29, T:0.18
Consensus pattern (23 bp):
GTCCCGGAGGACCACTATGAAAG
Found at i:7808042 original size:2 final size:2
Alignment explanation
Indices: 7808037--7808064 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7808027 ACTTATAAAC
7808037 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7808065 TACTTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7811938 original size:20 final size:20
Alignment explanation
Indices: 7811913--7811969 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
7811903 ACGATACTTT
7811913 TCAAGAGTTTCGAAACTATC
1 TCAAGAGTTTCGAAACTATC
7811933 TCAAGAGTTTCGAAACTATC
1 TCAAGAGTTTCGAAACTATC
7811953 TCAAGAGTTTCGAAACT
1 TCAAGAGTTTCGAAACT
7811970 TCCACTAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (20 bp):
TCAAGAGTTTCGAAACTATC
Found at i:7814774 original size:31 final size:31
Alignment explanation
Indices: 7814739--7814800 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
7814729 TTTGTTCACA
*
7814739 CATAGTTCTCGAATCTATCCTTAAATAAAAT
1 CATAGTGCTCGAATCTATCCTTAAATAAAAT
*
7814770 CATAGTGCTCGAATTTATCCTTAAATAAAAT
1 CATAGTGCTCGAATCTATCCTTAAATAAAAT
7814801 AAGTGTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (31 bp):
CATAGTGCTCGAATCTATCCTTAAATAAAAT
Found at i:7824114 original size:24 final size:21
Alignment explanation
Indices: 7824078--7824122 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
7824068 AAAGTTAAAC
7824078 TTTTTAAACTTTAACTATAATTA
1 TTTTTAAACTTTAA--ATAATTA
*
7824101 TTTTTAATATTTTAAATAATTA
1 TTTTTAA-ACTTTAAATAATTA
7824123 AATTGTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 7 0.35
24 6 0.30
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTTTAAACTTTAAATAATTA
Found at i:7825976 original size:20 final size:20
Alignment explanation
Indices: 7825948--7825999 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
7825938 TTTTTTGACT
7825948 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
*
7825968 ATTGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
7825988 ATCGCAATGCGA
1 ATCGCAATGCGA
7826000 TTCTGACTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:7826011 original size:20 final size:20
Alignment explanation
Indices: 7825988--7826054 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
7825978 GAATATGTAA
7825988 ATCGCAATGCGATTCTGACT
1 ATCGCAATGCGATTCTGACT
7826008 ATCGCAATGCGATTCTGACT
1 ATCGCAATGCGATTCTGACT
*
7826028 ATCGCAACGCGATTCTGACT
1 ATCGCAATGCGATTCTGACT
*
7826048 GTCGCAA
1 ATCGCAA
7826055 CACTGAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (20 bp):
ATCGCAATGCGATTCTGACT
Found at i:7826015 original size:40 final size:40
Alignment explanation
Indices: 7825971--7826054 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
7825961 TATGTAAATT
*
7825971 GCAATGCGAATATGTA-AATCGCAATGCGATTCTGACTATC
1 GCAATGCGAATATG-ACAATCGCAACGCGATTCTGACTATC
* * * *
7826011 GCAATGCGATTCTGACTATCGCAACGCGATTCTGACTGTC
1 GCAATGCGAATATGACAATCGCAACGCGATTCTGACTATC
7826051 GCAA
1 GCAA
7826055 CACTGAATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
39 1 0.03
40 37 0.97
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (40 bp):
GCAATGCGAATATGACAATCGCAACGCGATTCTGACTATC
Found at i:7826927 original size:24 final size:24
Alignment explanation
Indices: 7826876--7826929 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
7826866 GTATTCGAAA
*
7826876 TTTGATCTTGGTCAATACCCTGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
7826900 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
7826924 TTTGAT
1 TTTGAT
7826930 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.43
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:7827148 original size:14 final size:14
Alignment explanation
Indices: 7827129--7827155 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7827119 GAATAAGAAA
7827129 TCCCCGAAGAAAAG
1 TCCCCGAAGAAAAG
7827143 TCCCCGAAGAAAA
1 TCCCCGAAGAAAA
7827156 TGCCACGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.30, G:0.19, T:0.07
Consensus pattern (14 bp):
TCCCCGAAGAAAAG
Found at i:7829749 original size:31 final size:30
Alignment explanation
Indices: 7829711--7829832 Score: 185
Period size: 31 Copynumber: 4.0 Consensus size: 30
7829701 CCCGAAGGAC
*
7829711 CAGTCCATA-GATTCCGAAGAACCTAGGTAA
1 CAGTCCATATG-TTCCGAAGAACATAGGTAA
*
7829741 TCAGTCCATATGTCCCGAAG-ACATAGGTAA
1 -CAGTCCATATGTTCCGAAGAACATAGGTAA
7829771 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGT-AA
7829802 CAGTCCATATGTTCCGAAGAACATAGGTAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAA
7829832 C
1 C
7829833 CCTCGACCCT
Statistics
Matches: 85, Mismatches: 3, Indels: 7
0.89 0.03 0.07
Matches are distributed among these distances:
29 18 0.21
30 20 0.24
31 46 0.54
32 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (30 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAA
Found at i:7829806 original size:60 final size:61
Alignment explanation
Indices: 7829711--7829832 Score: 194
Period size: 60 Copynumber: 2.0 Consensus size: 61
7829701 CCCGAAGGAC
* *
7829711 CAGTCCATAGATTCCGAAGAACCTAGGTAATCAGTCCATATGTCCCGAAG-ACATAGGTAA
1 CAGTCCATAGATTCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
*
7829771 CAGTCCATATG-TTCCGAAGAACATAGGTAAACAGTCCATATGTTCCGAAGAACATAGGTAA
1 CAGTCCATA-GATTCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
7829832 C
1 C
7829833 CCTCGACCCT
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
60 45 0.79
61 12 0.21
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (61 bp):
CAGTCCATAGATTCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
Found at i:7830716 original size:21 final size:21
Alignment explanation
Indices: 7830692--7830736 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7830682 TCTTGTTCGT
* *
7830692 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
7830713 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
7830734 TTG
1 TTG
7830737 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:7833825 original size:31 final size:31
Alignment explanation
Indices: 7833787--7833909 Score: 194
Period size: 31 Copynumber: 4.0 Consensus size: 31
7833777 CCCGAAGGAC
* *
7833787 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TTCCGAAGAACATAGGTAAA
* *
7833818 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
7833849 CAGTCCATATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAAA
7833880 CAGTCCATATGTTCCGAAGAACATAGGTAA
1 CAGTCCATATGTTCCGAAGAACATAGGTAA
7833910 CCCTCGACCC
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
31 84 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTTCCGAAGAACATAGGTAAA
Found at i:7834794 original size:21 final size:21
Alignment explanation
Indices: 7834770--7834814 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7834760 TCTTGTTCGT
* *
7834770 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
7834791 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
7834812 TTG
1 TTG
7834815 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:7835717 original size:17 final size:17
Alignment explanation
Indices: 7835695--7835727 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7835685 AGAAAAAGGC
*
7835695 AATCAAATCGCAATCAA
1 AATCAAATCCCAATCAA
7835712 AATCAAATCCCAATCA
1 AATCAAATCCCAATCA
7835728 CAACCGGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.27, G:0.03, T:0.18
Consensus pattern (17 bp):
AATCAAATCCCAATCAA
Found at i:7836042 original size:140 final size:140
Alignment explanation
Indices: 7835787--7836056 Score: 522
Period size: 140 Copynumber: 1.9 Consensus size: 140
7835777 AAACGTTGTA
*
7835787 TTATGTGTAAACTTTTAACATTTTCAGTTATGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
7835852 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
7835917 TATGTGTATT
131 TATGTGTATT
7835927 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
7835992 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATTGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
7836057 CGCAACGCGA
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
TATGTGTATT
Found at i:7836052 original size:20 final size:20
Alignment explanation
Indices: 7836027--7836246 Score: 196
Period size: 20 Copynumber: 11.7 Consensus size: 20
7836017 TTACACATTC
* *
7836027 ATTTGAATATTGCAACGCGA
1 ATTTGACTATCGCAACGCGA
7836047 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
7836067 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
*
7836086 A----A-AATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
7836101 ATTTGACTATTGCAACACGA
1 ATTTGACTATCGCAACGCGA
*
7836121 ATATGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
7836141 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
7836161 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
* *
7836181 ATTTGACTATCGTAACGAGA
1 ATTTGACTATCGCAACGCGA
* *
7836201 A----A--ATCGCAAAGCGT
1 ATTTGACTATCGCAACGCGA
*
7836215 ATTAGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
7836235 A-TTGACTTTCGC
1 ATTTGACTATCGC
7836247 GTTGCGATTT
Statistics
Matches: 160, Mismatches: 28, Indels: 25
0.75 0.13 0.12
Matches are distributed among these distances:
14 18 0.11
15 3 0.02
16 1 0.01
18 1 0.01
19 12 0.08
20 125 0.78
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:7836265 original size:20 final size:20
Alignment explanation
Indices: 7836236--7836293 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
7836226 GCAACGCGAA
7836236 TTGACTTTCGCGTTGCGATT
1 TTGACTTTCGCGTTGCGATT
* *
7836256 TTGTCTTTCGCATTGCGATT
1 TTGACTTTCGCGTTGCGATT
* *
7836276 TTGAGTTTAGCGTTGCGA
1 TTGACTTTCGCGTTGCGA
7836294 AAGTGTACCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.12, C:0.17, G:0.26, T:0.45
Consensus pattern (20 bp):
TTGACTTTCGCGTTGCGATT
Found at i:7836452 original size:14 final size:14
Alignment explanation
Indices: 7836392--7836453 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
7836382 TACAAATAAG
*
7836392 AATTATTTACACATC
1 AATT-TTTACAAATC
**
7836407 AATATTAAACAAATC
1 AAT-TTTTACAAATC
*
7836422 AACTTTTACAAATC
1 AATTTTTACAAATC
*
7836436 AATTTTTATAAATC
1 AATTTTTACAAATC
7836450 AATT
1 AATT
7836454 AAACAAGCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 25 0.66
15 12 0.32
16 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTTTTACAAATC
Found at i:7838511 original size:20 final size:20
Alignment explanation
Indices: 7838486--7838553 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
7838476 TAGTTTACTT
7838486 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
*
7838506 TCGCAATGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
* **
7838526 TCGCAACACGAATGTGACTA
1 TCGCAACGCGAAAATGACTA
7838546 TCGCAACG
1 TCGCAACG
7838554 AGAGAATCGC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.18
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:7838621 original size:20 final size:20
Alignment explanation
Indices: 7838596--7838643 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
7838586 GCGATTCTTT
7838596 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
**
7838616 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCAAATTCG
7838636 CGTTGCGA
1 CGTTGCGA
7838644 AAGTAAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:7838872 original size:19 final size:20
Alignment explanation
Indices: 7838834--7838880 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
7838824 TAGTTTACTT
*
7838834 TCGCAACTCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
*
7838854 TCGCAACGCG-AATTGACTA
1 TCGCAACGCGAAAATGACTA
7838873 TCGCAACG
1 TCGCAACG
7838881 AGAGAATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:7838952 original size:20 final size:20
Alignment explanation
Indices: 7838923--7838990 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
7838913 ACGATTCTTT
* **
7838923 CGTTGTGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
7838943 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
7838963 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
7838983 CGTTGCGA
1 CGTTGCGA
7838991 AAGTAAACTA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.37
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:7839033 original size:347 final size:344
Alignment explanation
Indices: 7838395--7839139 Score: 1092
Period size: 348 Copynumber: 2.2 Consensus size: 344
7838385 TCTGAAGAAG
7838395 AATAAACAGTTTAGCAGTATTGGCAGCAACCGAATGAATTTACTAAGCAATCCATTCAAGTTTCA
1 AATAAACAGTTTAGCAGTATTGGCAGCAACCGAATGAATTTACTAAGCAATCCATTCAAGTTTCA
* *
7838460 ATTTGTAGAAGAAGAATAGTTTACTTTCGCAACGCGAAAATGACTATCGCAATGCGAAAATGACT
66 ATTTGCAGAAGAAGAATAGTTTACTTTCGCAACGCGAAAATGACTATCGCAACGCGAAAATGACT
* * * * * * *
7838525 ATCGCAACACGAATGTGACTATCGCAACGAGAGAATCGCAATGCGATTTTCATTTTGCATTGCGA
131 ATCGCAACACGAATGAGAC-ATCACAACGAGACAATCGCAATACGATTTTCATTGTGCATAGCAA
*
7838590 TTCTTTCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGCGTTGCGAAAGTAAACTAT
195 TTC-TGCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGCGTTGCGAAAGTAAACTAT
*
7838655 TCTTCTTCTGCAAATTGAAACTTGAATGGATTGCATTACTTCAACCAAAAGATAACCAAAAACAA
259 TCTTCTTCTGCAAATTGAAACTTGAATGGATTGCATTACTTC-ACCAAAAGACAACC-AAAACAA
7838720 ATACTAACTTCACAGGGTTAAAA
322 ATACTAACTTCACAGGGTTAAAA
* * *
7838743 AATAAACAGTTTAGCGGTATTGACAGCAACCGAATGAATTTACTAAGCAATCCATTTAAGTTTCA
1 AATAAACAGTTTAGCAGTATTGGCAGCAACCGAATGAATTTACTAAGCAATCCATTCAAGTTTCA
* * *
7838808 ATTTGCAGAGGAAGAATAGTTTACTTTCGCAACTCGAAAATGACTATCGCAACGCG-AATTGACT
66 ATTTGCAGAAGAAGAATAGTTTACTTTCGCAACGCGAAAATGACTATCGCAACGCGAAAATGACT
** * * *
7838872 ATCGC-A-ACG-A-GAGA-ATCACAATGCGATTTTCATTTCGCATTACGATTCTTTCGTTGTG-A
131 ATCGCAACACGAATGAGACATCACAA--CGA--GACA-ATCGCAATACGA-T-TTTCATTGTGCA
**
7838931 TAGTCAAATTC-GCGTTGCGATAGTCATTTTCGCGTTGCGATAGTCATTTTCGCGTTGCGAAAGT
189 TAG-C-AATTCTGCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGCGTTGCGAAAGT
7838995 AAACTATTCTTCTTCTGCAAATTGAAACTTGAATGGATTGCATTACTTCACCAAAAGACAACCAA
252 AAACTATTCTTCTTCTGCAAATTGAAACTTGAATGGATTGCATTACTTCACCAAAAGACAACCAA
*
7839060 AACAAATACTAACTTCACAGGGTTAAAG
317 AACAAATACTAACTTCACAGGGTTAAAA
7839088 AATAAACAGTTTAGCAGTATTGGCAGCAACCGAATGAATTTACTAAGCAATC
1 AATAAACAGTTTAGCAGTATTGGCAGCAACCGAATGAATTTACTAAGCAATC
7839140 TAAGTGAAAT
Statistics
Matches: 361, Mismatches: 27, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
341 6 0.02
343 6 0.02
344 1 0.00
345 83 0.23
346 23 0.06
347 115 0.32
348 123 0.34
349 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (344 bp):
AATAAACAGTTTAGCAGTATTGGCAGCAACCGAATGAATTTACTAAGCAATCCATTCAAGTTTCA
ATTTGCAGAAGAAGAATAGTTTACTTTCGCAACGCGAAAATGACTATCGCAACGCGAAAATGACT
ATCGCAACACGAATGAGACATCACAACGAGACAATCGCAATACGATTTTCATTGTGCATAGCAAT
TCTGCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGCGTTGCGAAAGTAAACTATTC
TTCTTCTGCAAATTGAAACTTGAATGGATTGCATTACTTCACCAAAAGACAACCAAAACAAATAC
TAACTTCACAGGGTTAAAA
Found at i:7840952 original size:19 final size:20
Alignment explanation
Indices: 7840893--7840979 Score: 115
Period size: 20 Copynumber: 4.5 Consensus size: 20
7840883 TCTGAAACTT
7840893 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
7840913 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** *
7840933 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
* *
7840952 AAAATCGCAACGCGAAACT-
1 AAAATCGCAACACGAAAATG
7840971 AAAATCGCA
1 AAAATCGCA
7840980 TTGCGATTCT
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
19 26 0.43
20 34 0.57
ACGTcount: A:0.49, C:0.23, G:0.16, T:0.11
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:7841656 original size:20 final size:20
Alignment explanation
Indices: 7841563--7841648 Score: 136
Period size: 20 Copynumber: 4.3 Consensus size: 20
7841553 ACGCTTTGAA
7841563 AATCGCGTTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
*
7841583 CATCGCGTTGCGATAGTCAG
1 AATCGCGTTGCGATAGTCAG
* *
7841603 AATCTCGTTGCGATAGTCAT
1 AATCGCGTTGCGATAGTCAG
*
7841623 AATCGCGTTGCGATAGTCAT
1 AATCGCGTTGCGATAGTCAG
7841643 AATCGC
1 AATCGC
7841649 ATTACGATTT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (20 bp):
AATCGCGTTGCGATAGTCAG
Found at i:7841710 original size:20 final size:20
Alignment explanation
Indices: 7841563--7841710 Score: 118
Period size: 20 Copynumber: 7.3 Consensus size: 20
7841553 ACGCTTTGAA
*
7841563 AATCGCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
* *
7841583 CATCGCGTTGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
* * *
7841603 AATCTCGTTGCGATAGTCAT
1 AATCGCATTGCGATAGTCAG
* *
7841623 AATCGCGTTGCGATAGTCAT
1 AATCGCATTGCGATAGTCAG
* * *
7841643 AATCGCATTACGAT-TTACAT
1 AATCGCATTGCGATAGT-CAG
* ** *
7841663 ATTTACATTGCGATAGTCGAAA
1 AATCGCATTGCGATAGTC--AG
*
7841685 AATCGCAATGCGATAGTCAG
1 AATCGCATTGCGATAGTCAG
7841705 AATCGC
1 AATCGC
7841711 GTTACGAATC
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
19 1 0.01
20 88 0.84
21 1 0.01
22 15 0.14
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (20 bp):
AATCGCATTGCGATAGTCAG
Found at i:7850993 original size:24 final size:25
Alignment explanation
Indices: 7850966--7851042 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 25
7850956 GTTTATTTAT
7850966 GTTCGTG-AACGTTCGGTTATGTTC
1 GTTCGTGTAACGTTCGGTTATGTTC
* * *
7850990 GTTC-TGTTATGTTCGTTTATGTTC
1 GTTCGTGTAACGTTCGGTTATGTTC
* ** *
7851014 GTTCG-GTTATTTTCGTTTATGTTC
1 GTTCGTGTAACGTTCGGTTATGTTC
7851038 GTTCG
1 GTTCG
7851043 ATTATGTTCG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
23 2 0.04
24 45 0.96
ACGTcount: A:0.09, C:0.14, G:0.25, T:0.52
Consensus pattern (25 bp):
GTTCGTGTAACGTTCGGTTATGTTC
Found at i:7850998 original size:14 final size:14
Alignment explanation
Indices: 7850975--7851054 Score: 61
Period size: 14 Copynumber: 6.3 Consensus size: 14
7850965 TGTTCGTGAA
*
7850975 CGTTCGGTTATGTT
1 CGTTCTGTTATGTT
7850989 CGTTCTGTTATGTT
1 CGTTCTGTTATGTT
7851003 CG---T-TTATGTT
1 CGTTCTGTTATGTT
* *
7851013 CGTTCGGTTATTTT
1 CGTTCTGTTATGTT
7851027 CG---T-TTATGTT
1 CGTTCTGTTATGTT
7851037 CGTTC-GATTATGTT
1 CGTTCTG-TTATGTT
7851051 CGTT
1 CGTT
7851055 TATGTTCATT
Statistics
Matches: 52, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
10 17 0.33
11 1 0.02
14 34 0.65
ACGTcount: A:0.09, C:0.14, G:0.23, T:0.55
Consensus pattern (14 bp):
CGTTCTGTTATGTT
Found at i:7851006 original size:48 final size:48
Alignment explanation
Indices: 7850952--7851061 Score: 127
Period size: 48 Copynumber: 2.3 Consensus size: 48
7850942 CATAGGTCTC
*
7850952 GTTCGTTTAT-TTATGTTC-GTGAACGTTCGGTTATGTTCGTTCTG-TTAT
1 GTTCGTTTATGTT-CGTTCGGT-AACGTTCGGTTATGTTCGTTC-GATTAT
* ** *
7851000 GTTCGTTTATGTTCGTTCGGTTATTTTCGTTTATGTTCGTTCGATTAT
1 GTTCGTTTATGTTCGTTCGGTAACGTTCGGTTATGTTCGTTCGATTAT
7851048 GTTCGTTTATGTTC
1 GTTCGTTTATGTTC
7851062 ATTCATTTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
47 1 0.02
48 49 0.91
49 4 0.07
ACGTcount: A:0.11, C:0.13, G:0.22, T:0.55
Consensus pattern (48 bp):
GTTCGTTTATGTTCGTTCGGTAACGTTCGGTTATGTTCGTTCGATTAT
Found at i:7851015 original size:10 final size:10
Alignment explanation
Indices: 7850996--7851061 Score: 51
Period size: 10 Copynumber: 5.8 Consensus size: 10
7850986 GTTCGTTCTG
7850996 TTATGTTCGT
1 TTATGTTCGT
7851006 TTATGTTCGTT
1 TTATGTTCG-T
*
7851017 CGGTTATTTTCGT
1 ---TTATGTTCGT
7851030 TTATGTTCGTT
1 TTATGTTCG-T
7851041 CGATTATGTTCGT
1 ---TTATGTTCGT
7851054 TTATGTTC
1 TTATGTTC
7851062 ATTCATTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
10 25 0.54
11 2 0.04
13 2 0.04
14 17 0.37
ACGTcount: A:0.11, C:0.12, G:0.20, T:0.58
Consensus pattern (10 bp):
TTATGTTCGT
Found at i:7851017 original size:38 final size:38
Alignment explanation
Indices: 7850975--7851054 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 38
7850965 TGTTCGTGAA
* * *
7850975 CGTTCGGTTATGTTCG-TTCTGTTATGTTCGTTTATGTT
1 CGTTCGGTTATGTTCGTTTATGTT-CGTTCGATTATGTT
*
7851013 CGTTCGGTTATTTTCGTTTATGTTCGTTCGATTATGTT
1 CGTTCGGTTATGTTCGTTTATGTTCGTTCGATTATGTT
7851051 CGTT
1 CGTT
7851055 TATGTTCATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
38 31 0.84
39 6 0.16
ACGTcount: A:0.09, C:0.14, G:0.23, T:0.55
Consensus pattern (38 bp):
CGTTCGGTTATGTTCGTTTATGTTCGTTCGATTATGTT
Found at i:7851047 original size:24 final size:24
Alignment explanation
Indices: 7850976--7851084 Score: 141
Period size: 24 Copynumber: 4.5 Consensus size: 24
7850966 GTTCGTGAAC
*
7850976 GTTCGGTTATGTTCGTTCTG-TTAT
1 GTTCGTTTATGTTCGTTC-GATTAT
*
7851000 GTTCGTTTATGTTCGTTCGGTTAT
1 GTTCGTTTATGTTCGTTCGATTAT
*
7851024 TTTCGTTTATGTTCGTTCGATTAT
1 GTTCGTTTATGTTCGTTCGATTAT
*
7851048 GTTCGTTTATGTTCATTC-ATTTAT
1 GTTCGTTTATGTTCGTTCGA-TTAT
*
7851072 GTTCATTTATGTT
1 GTTCGTTTATGTT
7851085 TAACCAAATC
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
23 2 0.03
24 75 0.97
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.57
Consensus pattern (24 bp):
GTTCGTTTATGTTCGTTCGATTAT
Found at i:7851840 original size:11 final size:11
Alignment explanation
Indices: 7851824--7851852 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
7851814 CGGGGCAATG
7851824 TCGAGCTTGAA
1 TCGAGCTTGAA
7851835 TCGAGCTTGAA
1 TCGAGCTTGAA
7851846 TCGAGCT
1 TCGAGCT
7851853 CAAGTCTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (11 bp):
TCGAGCTTGAA
Found at i:7852104 original size:16 final size:16
Alignment explanation
Indices: 7852083--7852149 Score: 75
Period size: 16 Copynumber: 4.3 Consensus size: 16
7852073 GTCTCCAACG
7852083 TTTATGTTCGTGTTCA
1 TTTATGTTCGTGTTCA
* *
7852099 TTTATGTTCGTGTACG
1 TTTATGTTCGTGTTCA
** *
7852115 TTTATGTTCGTGCGCG
1 TTTATGTTCGTGTTCA
7852131 TTTATGTTCGT-TT-A
1 TTTATGTTCGTGTTCA
7852145 TTTAT
1 TTTAT
7852150 TAAATGAACG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 5 0.11
16 39 0.89
ACGTcount: A:0.12, C:0.12, G:0.21, T:0.55
Consensus pattern (16 bp):
TTTATGTTCGTGTTCA
Found at i:7852121 original size:32 final size:32
Alignment explanation
Indices: 7852080--7852141 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
7852070 AGGGTCTCCA
**
7852080 ACGTTTATGTTCGTGTTCATTTATGTTCGTGT
1 ACGTTTATGTTCGTGCGCATTTATGTTCGTGT
*
7852112 ACGTTTATGTTCGTGCGCGTTTATGTTCGT
1 ACGTTTATGTTCGTGCGCATTTATGTTCGT
7852142 TTATTTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.11, C:0.15, G:0.24, T:0.50
Consensus pattern (32 bp):
ACGTTTATGTTCGTGCGCATTTATGTTCGTGT
Found at i:7852232 original size:16 final size:16
Alignment explanation
Indices: 7852211--7852241 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7852201 AAAAAAAATT
7852211 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
7852227 TGTTCGTTTATGTTC
1 TGTTCGTTTATGTTC
7852242 ATTTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.13, G:0.23, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:7861363 original size:41 final size:41
Alignment explanation
Indices: 7861295--7861680 Score: 319
Period size: 41 Copynumber: 9.4 Consensus size: 41
7861285 CAAAATGGTA
* * *
7861295 ACTTTAGTGGCGTTTTTTATATAAAACGCCACGATAGAGTAGT
1 ACTTTAGCGGCG-TTTTTATA-AAAACGCCGCGATAGACTAGT
* * * *
7861338 ACTTTAGCAGCGTTTTTATACAAACGCCGCTATAGACTCG-
1 ACTTTAGCGGCGTTTTTATAAAAACGCCGCGATAGACTAGT
* *
7861378 ACTTTAGCGGTGTTTTTATACAAAACGCCGCGATAGAGTAGT
1 ACTTTAGCGGCGTTTTTATA-AAAACGCCGCGATAGACTAGT
* * *
7861420 ACTTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTAGT
1 ACTTTAGCGGCGTTTTTATAAAAACGCCGCGATAGACTAGT
* * *
7861461 ACTTTAGTGGCGTTTTTATAAAAACGCCGCTATAGACTCGT
1 ACTTTAGCGGCGTTTTTATAAAAACGCCGCGATAGACTAGT
* * * * * * * * * *
7861502 AATTTTGTGGTGTTTATGTTTACAAACGTCGCTATAGGCTTGT
1 ACTTTAGCGGCGTTT-T-TATAAAAACGCCGCGATAGACTAGT
* ** * * *
7861545 ACTTTAGTGATGTTTTTATACAAACGCCGCTATAGACTCGT
1 ACTTTAGCGGCGTTTTTATAAAAACGCCGCGATAGACTAGT
* * ** * * *
7861586 ACATTAGTGGTATTTTTATACAAACGCCGCTATAGACTCGT
1 ACTTTAGCGGCGTTTTTATAAAAACGCCGCGATAGACTAGT
* * * *
7861627 ACATTAGTGGCGTTTTTATACAAACGCCGC--TAGACTTGT
1 ACTTTAGCGGCGTTTTTATAAAAACGCCGCGATAGACTAGT
*
7861666 ACTTTAGTGGCGTTT
1 ACTTTAGCGGCGTTT
7861681 GTTTTTTAAA
Statistics
Matches: 297, Mismatches: 42, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
39 22 0.07
40 18 0.06
41 187 0.63
42 28 0.09
43 42 0.14
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (41 bp):
ACTTTAGCGGCGTTTTTATAAAAACGCCGCGATAGACTAGT
Found at i:7861537 original size:166 final size:164
Alignment explanation
Indices: 7861295--7861658 Score: 451
Period size: 166 Copynumber: 2.2 Consensus size: 164
7861285 CAAAATGGTA
* * * *
7861295 ACTTTAGTGGCGTTTTTTATATAAAACGCCACGATAGAGTAGTACTTTAGCAGCGTTTTTATACA
1 ACTTTAGTGGCG-TTTTTATA-AAAACGCCGCTATAGACTAGTAATTTAGCAGCGTTTTTATACA
* * *
7861360 AACGCCGCTATAGACTCG-ACTTTAGCGGTGTTTTTATACAAAACGCCGCGATAGAGTAGTACTT
64 AACGCCGCTATAGACTCGTACTTTAGCGATGTTTTTATAC-AAACGCCGCGATAGACTAGTACAT
* *
7861424 TAGTGGCGTTTTTATATAAACGCCGCTATAGACTAGT
128 TAGTGGCATTTTTATACAAACGCCGCTATAGACTAGT
* * ** * *
7861461 ACTTTAGTGGCGTTTTTATAAAAACGCCGCTATAGACTCGTAATTTTGTGGTGTTTATGTTTACA
1 ACTTTAGTGGCGTTTTTATAAAAACGCCGCTATAGACTAGTAATTTAGCAGCGTTT-T-TATACA
* * * * * *
7861526 AACGTCGCTATAGGCTTGTACTTTAGTGATGTTTTTATACAAACGCCGCTATAGACTCGTACATT
64 AACGCCGCTATAGACTCGTACTTTAGCGATGTTTTTATACAAACGCCGCGATAGACTAGTACATT
* *
7861591 AGTGGTATTTTTATACAAACGCCGCTATAGACTCGT
129 AGTGGCATTTTTATACAAACGCCGCTATAGACTAGT
* *
7861627 ACATTAGTGGCGTTTTTATACAAACGCCGCTA
1 ACTTTAGTGGCGTTTTTATAAAAACGCCGCTA
7861659 GACTTGTACT
Statistics
Matches: 170, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
164 27 0.16
165 9 0.05
166 115 0.68
167 19 0.11
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (164 bp):
ACTTTAGTGGCGTTTTTATAAAAACGCCGCTATAGACTAGTAATTTAGCAGCGTTTTTATACAAA
CGCCGCTATAGACTCGTACTTTAGCGATGTTTTTATACAAACGCCGCGATAGACTAGTACATTAG
TGGCATTTTTATACAAACGCCGCTATAGACTAGT
Found at i:7861655 original size:82 final size:82
Alignment explanation
Indices: 7861295--7861680 Score: 411
Period size: 82 Copynumber: 4.7 Consensus size: 82
7861285 CAAAATGGTA
* * * * * * ** *
7861295 ACTTTAGTGGCGTTTTTTATATAAAACGCCACGATAGAGTAGTACTTTAGCAGCGTTTTTATACA
1 ACTTTAGTGGCG-TTTTTATA-CAAACGCCGCTATAGACTCGTACATTAGTGGTGTTTTTATACA
7861360 AACGCCGCTATAGACTCG-
64 AACGCCGCTATAGACTCGT
* * * * * * * *
7861378 ACTTTAGCGGTGTTTTTATACAAAACGCCGCGATAGAGTAGTACTTTAGTGGCGTTTTTATATAA
1 ACTTTAGTGGCGTTTTTATAC-AAACGCCGCTATAGACTCGTACATTAGTGGTGTTTTTATACAA
*
7861443 ACGCCGCTATAGACTAGT
65 ACGCCGCTATAGACTCGT
* * *
7861461 ACTTTAGTGGCGTTTTTATAAAAACGCCGCTATAGACTCGTA-ATTTTGTGGTGTTTATGTTTAC
1 ACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCGTACA-TTAGTGGTGTTT-T-TATAC
* * *
7861525 AAACGTCGCTATAGGCTTGT
63 AAACGCCGCTATAGACTCGT
** *
7861545 ACTTTAGTGATGTTTTTATACAAACGCCGCTATAGACTCGTACATTAGTGGTATTTTTATACAAA
1 ACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCGTACATTAGTGGTGTTTTTATACAAA
7861610 CGCCGCTATAGACTCGT
66 CGCCGCTATAGACTCGT
* * * *
7861627 ACATTAGTGGCGTTTTTATACAAACGCCGC--TAGACTTGTACTTTAGTGGCGTTT
1 ACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCGTACATTAGTGGTGTTT
7861681 GTTTTTTAAA
Statistics
Matches: 259, Mismatches: 38, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
80 20 0.08
82 139 0.54
83 30 0.12
84 69 0.27
85 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (82 bp):
ACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCGTACATTAGTGGTGTTTTTATACAAA
CGCCGCTATAGACTCGT
Found at i:7863997 original size:36 final size:36
Alignment explanation
Indices: 7863946--7864034 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
7863936 TGAACGGTTG
* * *
7863946 GGAATTTAATCAACATTTTACTGCTGCTGTTCAAGT
1 GGAATTTAATTAACATTCTACTGCTGATGTTCAAGT
7863982 GGAATTTAATTAACATTCTACTGCTGATGTTCAAGT
1 GGAATTTAATTAACATTCTACTGCTGATGTTCAAGT
*
7864018 GGAATTTAGTT-ACATTC
1 GGAATTTAATTAACATTC
7864035 CTCACTTATG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 6 0.12
36 43 0.88
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (36 bp):
GGAATTTAATTAACATTCTACTGCTGATGTTCAAGT
Found at i:7864920 original size:21 final size:21
Alignment explanation
Indices: 7864896--7864954 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
7864886 TGATTTATTA
**
7864896 TTATGGATTTCATTTTTCTTG
1 TTATGGATTTCAAGTTTCTTG
* *
7864917 TTATGGATTTTAAGTTTGTTG
1 TTATGGATTTCAAGTTTCTTG
*
7864938 TTATGGATGTCAAGTTT
1 TTATGGATTTCAAGTTT
7864955 ATTGGAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.19, C:0.05, G:0.20, T:0.56
Consensus pattern (21 bp):
TTATGGATTTCAAGTTTCTTG
Found at i:7865894 original size:30 final size:30
Alignment explanation
Indices: 7865860--7865932 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
7865850 CCCGAAGGAC
7865860 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
7865890 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
* *
7865920 CTGTCCATAGGTC
1 CTATCCAGAGGTC
7865933 CCGAAGAACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:7865956 original size:31 final size:31
Alignment explanation
Indices: 7865918--7866045 Score: 132
Period size: 31 Copynumber: 4.1 Consensus size: 31
7865908 GATCCTCGGT
* *
7865918 AACTGTCCATAGGTCCCGAAGAACCTAGGTA
1 AACTGTCCATATGTCCCGAAGAACATAGGTA
* **
7865949 AACTGTCCATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATATGTCCCGAAGAACATAGGTA
* ** *
7865980 TACCATCCATATGTCTCGAA-AGACATAGGTAA
1 AACTGTCCATATGTCCCGAAGA-ACATAGGT-A
* *
7866012 AACTGTCCATATGTTCCGTAGAACATAGGTA
1 AACTGTCCATATGTCCCGAAGAACATAGGTA
7866043 AAC
1 AAC
7866046 CCTCGACTCT
Statistics
Matches: 76, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
30 1 0.01
31 51 0.67
32 23 0.30
33 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (31 bp):
AACTGTCCATATGTCCCGAAGAACATAGGTA
Found at i:7868299 original size:43 final size:43
Alignment explanation
Indices: 7868229--7868362 Score: 225
Period size: 43 Copynumber: 3.1 Consensus size: 43
7868219 ATGTTACAAT
7868229 GTTTGTGGG-AAAACGCCGCTAAATCTCAACACCTATTGCGGC
1 GTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGC
**
7868271 GTTTGTGGGAAAAATTCCGCTAAATCTCAACACCTATTGCGGC
1 GTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGC
* *
7868314 GTTTGTTGGAAAAACGCCGCTAAATATCAACACCTATTGCGGC
1 GTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGC
7868357 GTTTGT
1 GTTTGT
7868363 TGCTATATTT
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 9 0.11
43 76 0.89
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (43 bp):
GTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGC
Found at i:7868629 original size:2 final size:2
Alignment explanation
Indices: 7868559--7868613 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
7868549 TATTTTTTTA
7868559 AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7868600 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
7868614 GGATAGATGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 51 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7868923 original size:2 final size:2
Alignment explanation
Indices: 7868873--7868907 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
7868863 GAACTATAAA
7868873 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7868908 GGATAGATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7869111 original size:293 final size:295
Alignment explanation
Indices: 7868578--7869171 Score: 1165
Period size: 293 Copynumber: 2.0 Consensus size: 295
7868568 TATAATATAT
7868578 ATATATATATATATATATATATATATATATATATATGGATAGATGAATATATTAATGGGTGGATG
1 ATAT-TATATATATATATATATATATATATATATATGGATAGATGAATATATTAATGGGTGGATG
7868643 GATGCTGCGGGTGATGGGTAAAAAAAATTCAACCTTATCCGACCCGACCCATCACCTGCCAATCA
65 GATGCTGCGGGTGATGGGTAAAAAAAATTCAACCTTATCCGACCCGACCCATCACCTGCCAATCA
7868708 TCCGTTTCACAGCGGATTTTCATCCATTTATTCGGGGCGGGCGGGCAGGTGGATAATCCACTCAC
130 TCCGTTTCACAGCGGATTTTCATCCATTTATTCGGGGCGGGCGGGCAGGTGGATAATCCACTCAC
7868773 CTATGGATAATTGCCAGCCCTAGACGGATCAAGTCTAACACTATGGTAAACAGCCTGCGTGTATT
195 CTATGGATAATTGCCAGCCCTAGACGGATCAAGTCTAACACTATGGTAAACAGCCTGCGTGTATT
7868838 TATTACTCCTA-TTCTTTTAAAAGTAGAACTATAAA
260 TATTACTCCTATTTCTTTTAAAAGTAGAACTATAAA
7868873 ATATTATATATATATATATATATATATATATATATGGATAGATGAATATATTAATGGGTGGATGG
1 ATATTATATATATATATATATATATATATATATATGGATAGATGAATATATTAATGGGTGGATGG
7868938 ATGCTGCGGGTGATGGGTAAAAAAAATTCAACCTTATCCGACCCGA-CCATCACCTGCCAATCAT
66 ATGCTGCGGGTGATGGGTAAAAAAAATTCAACCTTATCCGACCCGACCCATCACCTGCCAATCAT
7869002 CCGTTTCACAGCGGATTTTCATCCATTTATTCGGGGCGGGCGGGCAGGTGGATAATCCACTCACC
131 CCGTTTCACAGCGGATTTTCATCCATTTATTCGGGGCGGGCGGGCAGGTGGATAATCCACTCACC
7869067 TATGGATAATTGCCAGCCCTAGACGGATCAAGTCTAACACTATGGTAAACAGCCTGCGTGTATTT
196 TATGGATAATTGCCAGCCCTAGACGGATCAAGTCTAACACTATGGTAAACAGCCTGCGTGTATTT
7869132 ATTACTCCTATTTCTTTTAAAAGTAGAACTATAAA
261 ATTACTCCTATTTCTTTTAAAAGTAGAACTATAAA
7869167 ATATT
1 ATATT
7869172 TATTTGTCAA
Statistics
Matches: 298, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
293 158 0.53
294 136 0.46
295 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (295 bp):
ATATTATATATATATATATATATATATATATATATGGATAGATGAATATATTAATGGGTGGATGG
ATGCTGCGGGTGATGGGTAAAAAAAATTCAACCTTATCCGACCCGACCCATCACCTGCCAATCAT
CCGTTTCACAGCGGATTTTCATCCATTTATTCGGGGCGGGCGGGCAGGTGGATAATCCACTCACC
TATGGATAATTGCCAGCCCTAGACGGATCAAGTCTAACACTATGGTAAACAGCCTGCGTGTATTT
ATTACTCCTATTTCTTTTAAAAGTAGAACTATAAA
Found at i:7869567 original size:193 final size:194
Alignment explanation
Indices: 7869236--7869616 Score: 656
Period size: 193 Copynumber: 2.0 Consensus size: 194
7869226 TAATTATGAT
* *
7869236 GAAATGACCATCCAGCTCAGTTGGTAGAGCACAAGGTTCTTAACCTTGAGGTCGTGGGATCGAGT
1 GAAATGACCATCCAACTCAGTTGGTAGAGCACAAGGTTATTAACCTTGAGGTCGTGGGATCGAGT
*
7869301 CCAACGGAGGGCATTTCATAATTCGGAGGTCTCTTACGGAAGCTGCTCTCAACCTGGTATTGGGG
66 CCAACGGAGGGCATTTCATAATTCGGAGGTCTCCTACGGAAGCTGCTCTCAACCTGGTATTGGGG
*
7869366 GTAGCCTACTATCTTACCTCCCCCTTACCCCATACATATGGG-AAAAAGGGACAACCATTTTGA
131 GCAGCCTACTATCTTACCTCCCCCTTACCCCATACATATGGGAAAAAAGGGACAACCATTTTGA
*
7869429 GAAATGACCATCCAACTCAGTTGGTAGAGCACAAGGTTATTAACCTTGAGGTCGTGGGATTGAGT
1 GAAATGACCATCCAACTCAGTTGGTAGAGCACAAGGTTATTAACCTTGAGGTCGTGGGATCGAGT
* * ** *
7869494 CCCACGGAGGGCATTTCATAATTCGGAGGTCTCCTACGGAAGTTGCTCTCAATTTGGTGTTGGGG
66 CCAACGGAGGGCATTTCATAATTCGGAGGTCTCCTACGGAAGCTGCTCTCAACCTGGTATTGGGG
*
7869559 GCAGCCTACTATCTTACCTCCTCCTTACCCCATACATATGGGAAAAAAGGGACAACCA
131 GCAGCCTACTATCTTACCTCCCCCTTACCCCATACATATGGGAAAAAAGGGACAACCA
7869617 AATATAATTA
Statistics
Matches: 176, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
193 161 0.91
194 15 0.09
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (194 bp):
GAAATGACCATCCAACTCAGTTGGTAGAGCACAAGGTTATTAACCTTGAGGTCGTGGGATCGAGT
CCAACGGAGGGCATTTCATAATTCGGAGGTCTCCTACGGAAGCTGCTCTCAACCTGGTATTGGGG
GCAGCCTACTATCTTACCTCCCCCTTACCCCATACATATGGGAAAAAAGGGACAACCATTTTGA
Found at i:7870347 original size:31 final size:31
Alignment explanation
Indices: 7870309--7870482 Score: 294
Period size: 31 Copynumber: 5.6 Consensus size: 31
7870299 TTCATAGATT
* *
7870309 CCGAAGAACCTAGGTAATCAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
7870340 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
7870371 CCGAAGAACATAGGTAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
*
7870402 CCGAAGAACATAGATAAACAGTCCATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
* *
7870433 CCAAAGAACATAGGTAAACAGTCAATATGTC
1 CCGAAGAACATAGGTAAACAGTCCATATGTC
*
7870464 CTGAAGAACATAGGTAAAC
1 CCGAAGAACATAGGTAAAC
7870483 CCTCGACCCT
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 135 1.00
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (31 bp):
CCGAAGAACATAGGTAAACAGTCCATATGTC
Found at i:7873832 original size:11 final size:11
Alignment explanation
Indices: 7873816--7873840 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7873806 TCAAATGCAT
7873816 AAATAAAAATA
1 AAATAAAAATA
7873827 AAATAAAAATA
1 AAATAAAAATA
7873838 AAA
1 AAA
7873841 CAAATTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:7874253 original size:13 final size:13
Alignment explanation
Indices: 7874235--7874260 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7874225 AAATTACTAA
7874235 TTTATTAATAGAT
1 TTTATTAATAGAT
7874248 TTTATTAATAGAT
1 TTTATTAATAGAT
7874261 AATAAAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TTTATTAATAGAT
Found at i:7874437 original size:30 final size:31
Alignment explanation
Indices: 7874397--7874464 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 31
7874387 AGCAAAGAAC
* *
7874397 TTAATGAGCACGAGTCGAGA-AAC-AATTTTT
1 TTAACGAGCACGAGTCGA-ACAACAAAATTTT
*
7874427 TTAACGAGCACGATTCGAACAACAAAATTTT
1 TTAACGAGCACGAGTCGAACAACAAAATTTT
7874458 TTAACGA
1 TTAACGA
7874465 ACGCAACTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 1 0.03
30 19 0.58
31 13 0.39
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (31 bp):
TTAACGAGCACGAGTCGAACAACAAAATTTT
Found at i:7874576 original size:27 final size:27
Alignment explanation
Indices: 7874545--7874601 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
7874535 ATATCGATTG
*
7874545 TTATTCAACAATTTTAAACTTACAAGA
1 TTATTCAACAACTTTAAACTTACAAGA
*
7874572 TTATTGAACAACTTTAAACTTACAAGA
1 TTATTCAACAACTTTAAACTTACAAGA
7874599 TTA
1 TTA
7874602 ATTAATTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (27 bp):
TTATTCAACAACTTTAAACTTACAAGA
Found at i:7876916 original size:12 final size:12
Alignment explanation
Indices: 7876899--7876924 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7876889 AAGAACATTT
7876899 CTATGGTTACAA
1 CTATGGTTACAA
7876911 CTATGGTTACAA
1 CTATGGTTACAA
7876923 CT
1 CT
7876925 TTATTGTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (12 bp):
CTATGGTTACAA
Found at i:7883339 original size:17 final size:17
Alignment explanation
Indices: 7883293--7883338 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
7883283 TATATATAGT
7883293 AAAATTAAAAAATAAAA
1 AAAATTAAAAAATAAAA
* *
7883310 AATATTCAAAAATAAAA
1 AAAATTAAAAAATAAAA
7883327 ATAAATTAAAAA
1 A-AAATTAAAAA
7883339 TCATAATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAATTAAAAAATAAAA
Found at i:7884116 original size:16 final size:16
Alignment explanation
Indices: 7884088--7884141 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
7884078 ATTTTTTTAG
7884088 AATTTTTT-TATATTT
1 AATTTTTTATATATTT
*
7884103 AATTTTTTAAATATTT
1 AATTTTTTATATATTT
*
7884119 GAATAATTTTATAT-TTT
1 -AAT-TTTTTATATATTT
7884136 AATTTT
1 AATTTT
7884142 AAAATATAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 10 0.31
16 9 0.28
17 6 0.19
18 7 0.22
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (16 bp):
AATTTTTTATATATTT
Found at i:7884156 original size:31 final size:33
Alignment explanation
Indices: 7884093--7884165 Score: 91
Period size: 32 Copynumber: 2.3 Consensus size: 33
7884083 TTTAGAATTT
* **
7884093 TTTTATA-TTTAATTTTTTAAATATTTGAATAA
1 TTTTATATTTTAATTTTTAAAATATAAGAATAA
7884125 TTTTATATTTTAA-TTTTAAAATATAAG-ATAA
1 TTTTATATTTTAATTTTTAAAATATAAGAATAA
7884156 TTTT-TATTTT
1 TTTTATATTTT
7884166 TTAAAAATAG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 6 0.16
31 8 0.22
32 18 0.49
33 5 0.14
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (33 bp):
TTTTATATTTTAATTTTTAAAATATAAGAATAA
Found at i:7895652 original size:20 final size:20
Alignment explanation
Indices: 7895623--7895661 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7895613 TCCAAATTCG
*
7895623 CAACGTGAATCTGTAAATCA
1 CAACGCGAATCTGTAAATCA
*
7895643 CAACGCGAATTTGTAAATC
1 CAACGCGAATCTGTAAATC
7895662 GTAACACAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (20 bp):
CAACGCGAATCTGTAAATCA
Found at i:7895697 original size:20 final size:20
Alignment explanation
Indices: 7895672--7895851 Score: 154
Period size: 20 Copynumber: 8.9 Consensus size: 20
7895662 GTAACACAGA
7895672 AGTCAAATTCGCAACGCGAT
1 AGTCAAATTCGCAACGCGAT
7895692 AGTCAAATTCGCAACGCGAT
1 AGTCAAATTCGCAACGCGAT
*
7895712 AGTCAAATTCACAACGCGAAT
1 AGTCAAATTCGCAACGCG-AT
* *
7895733 CTGT-AAA-TCGCAACACAGA-
1 -AGTCAAATTCGCAACGC-GAT
* **
7895752 AGTCAAATTTGCAACATAGA-
1 AGTCAAATTCGCAAC-GCGAT
*
7895772 AGTCAAATTCGCAACGCGGT
1 AGTCAAATTCGCAACGCGAT
* *
7895792 GGTCAAATTCGCAACACTGA-
1 AGTCAAATTCGCAACGC-GAT
* * *
7895812 ATTTCAAATTCGCAACGCAAA
1 A-GTCAAATTCGCAACGCGAT
*
7895833 AGTCAAATTCACAACGCGA
1 AGTCAAATTCGCAACGCGA
7895852 ATTTTATTTT
Statistics
Matches: 128, Mismatches: 22, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
18 2 0.02
19 4 0.03
20 98 0.77
21 22 0.17
22 2 0.02
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (20 bp):
AGTCAAATTCGCAACGCGAT
Found at i:7895724 original size:80 final size:79
Alignment explanation
Indices: 7895615--7895852 Score: 266
Period size: 80 Copynumber: 3.0 Consensus size: 79
7895605 TGCGATCTTC
* * *
7895615 CAAATTCGCAACGTGAATCTGT-AAA-TCACAACGCGAATTTGTAAATCGTAACACAGAAGTCAA
1 CAAATTCGCAACGCG-AT-AGTCAAATTCACAACGCGAATTTGTAAATCGCAACACAGAAGTCAA
7895678 ATTCGCAACGCGATAGT
64 ATTCGCAACGCGA-AGT
*
7895695 CAAATTCGCAACGCGATAGTCAAATTCACAACGCGAATCTGTAAATCGCAACACAGAAGTCAAAT
1 CAAATTCGCAACGCGATAGTCAAATTCACAACGCGAATTTGTAAATCGCAACACAGAAGTCAAAT
* **
7895760 TTGCAACATAGAAGT
66 TCGCAAC-GCGAAGT
* * * * * * *
7895775 CAAATTCGCAACGCGGTGGTCAAATTCGCAACACTGAATTT-CAAATTCGCAACGCAAAAGTCAA
1 CAAATTCGCAACGCGATAGTCAAATTCACAACGC-GAATTTGTAAA-TCGCAACACAGAAGTCAA
*
7895839 ATTCACAACGCGAA
64 ATTCGCAACGCGAA
7895853 TTTTATTTTA
Statistics
Matches: 134, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
78 2 0.01
79 5 0.04
80 97 0.72
81 30 0.22
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (79 bp):
CAAATTCGCAACGCGATAGTCAAATTCACAACGCGAATTTGTAAATCGCAACACAGAAGTCAAAT
TCGCAACGCGAAGT
Found at i:7895744 original size:60 final size:60
Alignment explanation
Indices: 7895673--7895853 Score: 190
Period size: 60 Copynumber: 3.0 Consensus size: 60
7895663 TAACACAGAA
* *
7895673 GTCAAATTCGCAACGC-GATAGTCAAATTCGCAACGCGATAGTCAAATTCACAACGCGAATCT
1 GTCAAATTCGCAACACAGA-AGTCAAATTCGCAACGCGA-AGTCAAATTCACAACGCGAAT-G
* ** * *
7895735 GT-AAA-TCGCAACACAGAAGTCAAATTTGCAACATAGAAGTCAAATTCGCAACGCG-GTG
1 GTCAAATTCGCAACACAGAAGTCAAATTCGCAAC-GCGAAGTCAAATTCACAACGCGAATG
* * *
7895793 GTCAAATTCGCAACACTGAATTTCAAATTCGCAACGCAAAAGTCAAATTCACAACGCGAAT
1 GTCAAATTCGCAACACAGAA-GTCAAATTCGCAACGC-GAAGTCAAATTCACAACGCGAAT
7895854 TTTATTTTAT
Statistics
Matches: 97, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
58 2 0.02
59 4 0.04
60 51 0.53
61 37 0.38
62 3 0.03
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (60 bp):
GTCAAATTCGCAACACAGAAGTCAAATTCGCAACGCGAAGTCAAATTCACAACGCGAATG
Found at i:7896008 original size:22 final size:22
Alignment explanation
Indices: 7895983--7896037 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
7895973 CTCTCTATGG
7895983 CGAAATCCGTCCCCATCTCCGA
1 CGAAATCCGTCCCCATCTCCGA
*
7896005 CGAAATCCGTCCCCATCTCCGG
1 CGAAATCCGTCCCCATCTCCGA
*
7896027 CGAAATTCGTC
1 CGAAATCCGTC
7896038 TATCCCTCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.22, C:0.42, G:0.16, T:0.20
Consensus pattern (22 bp):
CGAAATCCGTCCCCATCTCCGA
Found at i:7896388 original size:20 final size:20
Alignment explanation
Indices: 7896363--7896429 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
7896353 AAACTTAAAT
7896363 TCGCAACACGAAAATGAAAA
1 TCGCAACACGAAAATGAAAA
*
7896383 TCGCAACAC------CAAAA
1 TCGCAACACGAAAATGAAAA
*
7896397 TCGCAACGCGAAAATGAAAA
1 TCGCAACACGAAAATGAAAA
*
7896417 TCGCAACGCGAAA
1 TCGCAACACGAAA
7896430 TCGCGTTGCG
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
14 12 0.32
20 26 0.68
ACGTcount: A:0.49, C:0.25, G:0.16, T:0.09
Consensus pattern (20 bp):
TCGCAACACGAAAATGAAAA
Found at i:7896429 original size:14 final size:14
Alignment explanation
Indices: 7896378--7896411 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7896368 ACACGAAAAT
7896378 GAAAATCGCAACAC
1 GAAAATCGCAACAC
* *
7896392 CAAAATCGCAACGC
1 GAAAATCGCAACAC
7896406 GAAAAT
1 GAAAAT
7896412 GAAAATCGCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.26, G:0.15, T:0.09
Consensus pattern (14 bp):
GAAAATCGCAACAC
Found at i:7896471 original size:20 final size:20
Alignment explanation
Indices: 7896430--7896471 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7896420 CAACGCGAAA
* * *
7896430 TCGCGTTGCGATTTTCATTT
1 TCGCGTTGCGAATTTAAGTT
7896450 TCGCGTTGCGAATTTAAGTT
1 TCGCGTTGCGAATTTAAGTT
7896470 TC
1 TC
7896472 AGAAACTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.14, C:0.19, G:0.21, T:0.45
Consensus pattern (20 bp):
TCGCGTTGCGAATTTAAGTT
Found at i:7898682 original size:21 final size:21
Alignment explanation
Indices: 7898630--7898682 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
7898620 GATTCATCTA
7898630 TCATCGTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
* * * *
7898651 CCACCGATCAAGAGGCCCCTG
1 TCATCGTTCAAGAGGCCCCTC
*
7898672 TCATTGTTCAA
1 TCATCGTTCAA
7898683 TGGGTCCCTC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:7900113 original size:69 final size:66
Alignment explanation
Indices: 7900030--7900206 Score: 243
Period size: 66 Copynumber: 2.6 Consensus size: 66
7900020 TCTGGGGTAC
*
7900030 ATTTTTTTGCTTGTTTAATTGAATTT-TACATTGAAAGTTGATTTGTTTAA-TTGATGAGGAAAT
1 ATTTTTTTGCTTGTTTAATTG-ATTTGT--A---AAAGTTGATTTGTTTAATTTGATGAGCAAAT
7900093 AAGAATT
60 AAGAATT
* *
7900100 A-TTTTTTGATTGTTTAATTGATTTGTAAAAGTTGATTTGTTTAATTTGATGTGCAAATAAGAAT
1 ATTTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTTTAATTTGATGAGCAAATAAGAAT
7900164 T
66 T
*
7900165 ATTTTTTTGCTTGTTTAATTTATTTGTAAAAGTTGATTTGTT
1 ATTTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTT
7900207 GTTTTAAATT
Statistics
Matches: 99, Mismatches: 5, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
64 17 0.17
65 19 0.19
66 38 0.38
67 1 0.01
68 4 0.04
69 19 0.19
70 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.16, T:0.53
Consensus pattern (66 bp):
ATTTTTTTGCTTGTTTAATTGATTTGTAAAAGTTGATTTGTTTAATTTGATGAGCAAATAAGAAT
T
Found at i:7900148 original size:14 final size:14
Alignment explanation
Indices: 7900104--7900149 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
7900094 AGAATTATTT
7900104 TTTGA-TTGTTTAA
1 TTTGATTTGTTTAA
**
7900117 -TTGATTTGTAAAA
1 TTTGATTTGTTTAA
*
7900130 GTTGATTTGTTTAA
1 TTTGATTTGTTTAA
7900144 TTTGAT
1 TTTGAT
7900150 GTGCAAATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
12 4 0.15
13 6 0.23
14 16 0.62
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57
Consensus pattern (14 bp):
TTTGATTTGTTTAA
Found at i:7900367 original size:54 final size:54
Alignment explanation
Indices: 7900260--7900374 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
7900250 GTTGAAGGTA
** * *
7900260 CAAATTCGCAACGCGAAATAAGCATTGCGATAGTCAAATTCGCAACACGAAAGT
1 CAAATTCATAACGCGAAATAAGCATTGCGAAAGTCAAATTCGCAACACAAAAGT
* * **
7900314 TAAATTCATAACGCGAAATAAGCTTTGCGAAAGTCAAATTCGCAACGTAAAAGT
1 CAAATTCATAACGCGAAATAAGCATTGCGAAAGTCAAATTCGCAACACAAAAGT
7900368 CAAATTC
1 CAAATTC
7900375 GAGTTGCGAT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (54 bp):
CAAATTCATAACGCGAAATAAGCATTGCGAAAGTCAAATTCGCAACACAAAAGT
Found at i:7902751 original size:24 final size:24
Alignment explanation
Indices: 7902717--7902770 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
7902707 CTGAAACATC
7902717 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
7902741 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
7902765 ATCAAA
1 ATCAAA
7902771 TTTGGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:7903828 original size:20 final size:19
Alignment explanation
Indices: 7903768--7903831 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
7903758 AATTCATTTT
*
7903768 CGAATTTGAAATTCAGTGTTG
1 CGAATTTG-ACTTC-GTGTTG
* *
7903789 CGAATTTGACCATCGCGTTG
1 CGAATTTGA-CTTCGTGTTG
7903809 CGAATTTGACTTCTGTGTTG
1 CGAATTTGACTTC-GTGTTG
7903829 CGA
1 CGA
7903832 TTTACAGATT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.08
20 23 0.64
21 10 0.28
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (19 bp):
CGAATTTGACTTCGTGTTG
Found at i:7907484 original size:80 final size:80
Alignment explanation
Indices: 7907177--7907487 Score: 435
Period size: 80 Copynumber: 3.9 Consensus size: 80
7907167 ATTGCCCTCA
* * * *
7907177 GCACACAGCAAAAAGGGGAGCCAACATAAGGATATACCTT-GGATCTACCCAAGGACATCCTTAG
1 GCACACAGC--AAA-GGGAACCAACCTAAGGATATACCTTGGGACCTACCCAA-GATATCCTTAG
* * *
7907241 ATACGTAGGGTTACCTTAA
62 GTCCGTAGGGTTACCTTAT
* * * *
7907260 GCACACAGCTAAGAGAACCAACCTAAGGATATACCTTGGGGCCTACCCAAGATATCCTTAGGTCT
1 GCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGGACCTACCCAAGATATCCTTAGGTCC
7907325 GTAGGGTTACCTTAT
66 GTAGGGTTACCTTAT
*
7907340 GCACACAACAAAGGGAACCAACCTAAGGATATACCTTGGGACCTACCCAAGATATCCTTAGGTCC
1 GCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGGACCTACCCAAGATATCCTTAGGTCC
7907405 GTAGGGTTACCTTAT
66 GTAGGGTTACCTTAT
* * **
7907420 GCACACAGCAAAGGGAACCAACCTAAGGATTTGCCTTGGGGGCTACCCAAGATATCCTTAGGTCC
1 GCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGGACCTACCCAAGATATCCTTAGGTCC
7907485 GTA
66 GTA
7907488 ATGACTTACA
Statistics
Matches: 206, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
80 185 0.90
81 12 0.06
83 9 0.04
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (80 bp):
GCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGGACCTACCCAAGATATCCTTAGGTCC
GTAGGGTTACCTTAT
Found at i:7911449 original size:33 final size:33
Alignment explanation
Indices: 7911410--7911833 Score: 253
Period size: 33 Copynumber: 12.3 Consensus size: 33
7911400 AAAAAAATCG
* *
7911410 GGGTCGGGTTGGATTTTTTTAAGTTTGATATTC
1 GGGTCGGGTTGGGTTTTTTTAAGTGTGATATTC
7911443 GGGTCGGGTTAGGTCGGGTTTTTTTAAGTGTGATATTC
1 GGGTCGGG-T---T-GGGTTTTTTTAAGTGTGATATTC
* ***** *
7911481 GGGATCGGGTTGGATTTTTTTAAAAAAAATGGGTTC
1 GGG-TCGGGTTGGGTTTTTTTAAGTGTGAT--ATTC
* * * * *
7911517 GAGTAGAGTCGGGTTTTTTTAAGTTTGATATTC
1 GGGTCGGGTTGGGTTTTTTTAAGTGTGATATTC
7911550 GGGTC-----GGGTTTTTTTAAGTGTGATATGTGGGTTC
1 GGGTCGGGTTGGGTTTTTTTAAGTGTGATA------TTC
* *
7911584 GGGTCGGGTCGGTCGAGTTTTTTTAAGTGTGATTTTC
1 GGGTCGGGT---T-GGGTTTTTTTAAGTGTGATATTC
*
7911621 AGGTCGGGTCT-GGTTTTTTTAAGTGTGATATTC
1 GGGTCGGGT-TGGGTTTTTTTAAGTGTGATATTC
*
7911654 GGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTTC
1 GGGTCGGGTTGGGTTTTTTTAAGTGTGATA------TTC
*
7911693 GGGTCGGGTCAAGTCGGGTTTTTTTAAGTTTGATATTC
1 GGGTCGGGT----T-GGGTTTTTTTAAGTGTGATATTC
*
7911731 ---T--GGTCGGGTTTTTTTAAGTGTGATATTC
1 GGGTCGGGTTGGGTTTTTTTAAGTGTGATATTC
* **
7911759 AGGTCGGGTCAGG--TTTTTAAGTGTGATATTC
1 GGGTCGGGTTGGGTTTTTTTAAGTGTGATATTC
* *
7911790 TGGTTCGGGTCGGGTTTTTTTAAGTGTGATATTC
1 -GGGTCGGGTTGGGTTTTTTTAAGTGTGATATTC
7911824 GGGTCGGGTT
1 GGGTCGGGTT
7911834 TTTTTAAGTA
Statistics
Matches: 307, Mismatches: 41, Indels: 86
0.71 0.09 0.20
Matches are distributed among these distances:
28 41 0.13
31 19 0.06
32 10 0.03
33 78 0.25
34 40 0.13
35 20 0.07
36 5 0.02
37 12 0.04
38 28 0.09
39 17 0.06
43 18 0.06
44 19 0.06
ACGTcount: A:0.15, C:0.08, G:0.33, T:0.43
Consensus pattern (33 bp):
GGGTCGGGTTGGGTTTTTTTAAGTGTGATATTC
Found at i:7911689 original size:137 final size:136
Alignment explanation
Indices: 7911524--7911842 Score: 376
Period size: 137 Copynumber: 2.3 Consensus size: 136
7911514 TTCGAGTAGA
* * ** *
7911524 GTCGGGTTTTTTTAAGTTTGATATTCGGGTCGGGTTTTTTTAAGT-GTG-ATATGTGGGTTCGGG
1 GTCGGGTTTTTTTAAGTGTGATATTCGGGTCGGGTTTTTTTAAGTCGGGTATATGTAAGTT-GGA
* * *
7911587 TCGGGTC-GGTCGAGTTTTTTTAAGTGTGATTTTCAGGTCGGGTCTGGTTTTTTTAAGTGTGATA
65 T--AGTCTGGTCGAGTTTTTTTAAGTGTGATATTCAGGTCGGGTCAGG--TTTTTAAGTGTGATA
7911651 TTC-GGGTCGG
126 TTCTGGGTCGG
**** * * * * *
7911661 GTCGGGTTTTTTTAAGTGTGATATTCGGGTTCGGGTCGGGTCAAGTCGGGTTTTTTTAAGTTTGA
1 GTCGGGTTTTTTTAAGTGTGATATTCGGG-TCGGGTTTTTTTAAGTCGGGTATATGTAAGTTGGA
* *
7911726 TATTCTGGTCGGGTTTTTTTAAGTGTGATATTCAGGTCGGGTCAGGTTTTTAAGTGTGATATTCT
65 TAGTCTGGTCGAGTTTTTTTAAGTGTGATATTCAGGTCGGGTCAGGTTTTTAAGTGTGATATTCT
*
7911791 GGTTCGG
130 GGGTCGG
7911798 GTCGGGTTTTTTTAAGTGTGATATTCGGGTCGGGTTTTTTTAAGT
1 GTCGGGTTTTTTTAAGTGTGATATTCGGGTCGGGTTTTTTTAAGT
7911843 ATGGTATTCG
Statistics
Matches: 152, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
136 29 0.19
137 65 0.43
138 48 0.32
139 4 0.03
140 6 0.04
ACGTcount: A:0.13, C:0.09, G:0.33, T:0.45
Consensus pattern (136 bp):
GTCGGGTTTTTTTAAGTGTGATATTCGGGTCGGGTTTTTTTAAGTCGGGTATATGTAAGTTGGAT
AGTCTGGTCGAGTTTTTTTAAGTGTGATATTCAGGTCGGGTCAGGTTTTTAAGTGTGATATTCTG
GGTCGG
Found at i:7911693 original size:109 final size:105
Alignment explanation
Indices: 7911524--7911866 Score: 375
Period size: 93 Copynumber: 3.4 Consensus size: 105
7911514 TTCGAGTAGA
*
7911524 GTCGGGTTTTTTTAAGTTTGATA-T----TCGGGTCGGGTTTTTTTAAGTGTGATATGT-GGGTT
1 GTCGGGTTTTTTTAAGTGTGATATTCAGGTCGGGTCGGGTTTTTTTAAGTGTGATAT-TCGGGTT
* *
7911583 CGGGTCGGGTC-GGTCGAGTTTTTTTAAGTGTGATTTTCAGGTCGG
65 CGGGTCGGGTCAAGTCGAGTTTTTTTAAGTGTGATATTC---T--G
* *
7911628 GTCTGGTTTTTTTAAGTGTGATATTCGGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTTC
1 GTCGGGTTTTTTTAAGTGTGATATTCAGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTTC
* *
7911693 GGGTCGGGTCAAGTCGGGTTTTTTTAAGTTTGATATTCTG
66 GGGTCGGGTCAAGTCGAGTTTTTTTAAGTGTGATATTCTG
*
7911733 GTCGGGTTTTTTTAAGTGTGATATTCAGGTCGGGTCAGG--TTTTTAAGTGTGATATTC----T-
1 GTCGGGTTTTTTTAAGTGTGATATTCAGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTTC
* *
7911791 GGTTCGGGTC--G--G-GTTTTTTTAAGTGTGATATTCGG
66 GGGTCGGGTCAAGTCGAGTTTTTTTAAGTGTGATATTCTG
* * *
7911826 GTCGGGTTTTTTTAAGTATGGTATTCGGGTC-GGTCGGGTTT
1 GTCGGGTTTTTTTAAGTGTGATATTCAGGTCGGGTCGGGTTT
7911867 ATGGTGAAAA
Statistics
Matches: 214, Mismatches: 16, Indels: 28
0.83 0.06 0.11
Matches are distributed among these distances:
92 6 0.03
93 49 0.23
94 2 0.01
96 1 0.00
98 9 0.04
99 1 0.00
103 18 0.08
104 21 0.10
105 38 0.18
107 1 0.00
108 1 0.00
109 44 0.21
110 23 0.11
ACGTcount: A:0.13, C:0.09, G:0.34, T:0.44
Consensus pattern (105 bp):
GTCGGGTTTTTTTAAGTGTGATATTCAGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTTC
GGGTCGGGTCAAGTCGAGTTTTTTTAAGTGTGATATTCTG
Done.