Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007923.1 Hibiscus syriacus cultivar Beakdansim tig00110328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8415618
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 40
Found at i:7911740 original size:49 final size:44
Alignment explanation
Indices: 7911652--7911739 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
7911642 AGTGTGATAT
**
7911652 TCGGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTTCGGG
1 TCGGGTCAAGTCGGGTTTTTTTAAGTGTGATATTCGGGTTCGGG
* *
7911696 TCGGGTCAAGTCGGGTTTTTTTAAGTTTGATATTCTGG-TCGGG
1 TCGGGTCAAGTCGGGTTTTTTTAAGTGTGATATTCGGGTTCGGG
7911739 T
1 T
7911740 TTTTTTAAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 6 0.15
44 34 0.85
ACGTcount: A:0.11, C:0.11, G:0.36, T:0.41
Consensus pattern (44 bp):
TCGGGTCAAGTCGGGTTTTTTTAAGTGTGATATTCGGGTTCGGG
Found at i:7911745 original size:28 final size:28
Alignment explanation
Indices: 7911705--7911858 Score: 173
Period size: 28 Copynumber: 5.2 Consensus size: 28
7911695 GTCGGGTCAA
* *
7911705 GTCGGGTTTTTTTAAGTTTGATATTCTG
1 GTCGGGTTTTTTTAAGTGTGATATTCGG
*
7911733 GTCGGGTTTTTTTAAGTGTGATATTCAG
1 GTCGGGTTTTTTTAAGTGTGATATTCGG
*
7911761 GTCGGGTCAGGTTTTTAAGTGTGATATTCTGGTTCGG
1 GTCGGGT---TTTTTTAAGTGTGATA------TTCGG
7911798 GTCGGGTTTTTTTAAGTGTGATATTCGG
1 GTCGGGTTTTTTTAAGTGTGATATTCGG
* *
7911826 GTCGGGTTTTTTTAAGTATGGTATTCGG
1 GTCGGGTTTTTTTAAGTGTGATATTCGG
7911854 GTCGG
1 GTCGG
7911859 TCGGGTTTAT
Statistics
Matches: 110, Mismatches: 7, Indels: 18
0.81 0.05 0.13
Matches are distributed among these distances:
28 69 0.63
31 15 0.14
34 15 0.14
37 11 0.10
ACGTcount: A:0.14, C:0.08, G:0.32, T:0.45
Consensus pattern (28 bp):
GTCGGGTTTTTTTAAGTGTGATATTCGG
Found at i:7912473 original size:16 final size:16
Alignment explanation
Indices: 7912452--7912495 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
7912442 TCAGATTCAA
7912452 ATTTTAATTCCTACAT
1 ATTTTAATTCCTACAT
*
7912468 ATTTTAATTCCTATAT
1 ATTTTAATTCCTACAT
7912484 ATTTTAATTCCT
1 ATTTTAATTCCT
7912496 TCACAGATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.30, C:0.16, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTAATTCCTACAT
Found at i:7919390 original size:15 final size:15
Alignment explanation
Indices: 7919328--7919464 Score: 145
Period size: 15 Copynumber: 9.1 Consensus size: 15
7919318 TTCAAGAGCA
*
7919328 ATTATAAAATATAATT
1 ATTATAAAATA-ATTT
7919344 ATTTATTAAAATAATTT
1 A-TTA-TAAAATAATTT
** *
7919361 A--ATAAGGTTATTT
1 ATTATAAAATAATTT
*
7919374 ATTTTAAAATAATTT
1 ATTATAAAATAATTT
7919389 ATTATAAAATAATTT
1 ATTATAAAATAATTT
*
7919404 ATTTTAAAATAATTT
1 ATTATAAAATAATTT
7919419 ATTATAAAAT-ATTT
1 ATTATAAAATAATTT
*
7919433 ATTATAAAATAAATT
1 ATTATAAAATAATTT
*
7919448 ATTTTAAAATAAATTT
1 ATTATAAAAT-AATTT
7919464 A
1 A
7919465 AGTTTTTGTA
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
13 9 0.09
14 15 0.15
15 57 0.56
16 6 0.06
17 7 0.07
18 7 0.07
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.48
Consensus pattern (15 bp):
ATTATAAAATAATTT
Found at i:7919442 original size:44 final size:46
Alignment explanation
Indices: 7919370--7919464 Score: 158
Period size: 44 Copynumber: 2.1 Consensus size: 46
7919360 TAATAAGGTT
* *
7919370 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAAT-A
1 ATTTATTATAAAATAATTTATTATAAAATAAATTATTTTAAAATAA
7919415 ATTTATTATAAAAT-ATTTATTATAAAATAAATTATTTTAAAATAA
1 ATTTATTATAAAATAATTTATTATAAAATAAATTATTTTAAAATAA
7919460 ATTTA
1 ATTTA
7919465 AGTTTTTGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 28 0.60
45 19 0.40
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (46 bp):
ATTTATTATAAAATAATTTATTATAAAATAAATTATTTTAAAATAA
Found at i:7925799 original size:27 final size:27
Alignment explanation
Indices: 7925761--7925815 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
7925751 TCGTTCTTCT
7925761 TCTCGATATTCACAATACATATACACG
1 TCTCGATATTCACAATACATATACACG
7925788 TCTCGATATTCACAATACATATACACG
1 TCTCGATATTCACAATACATATACACG
7925815 T
1 T
7925816 GCACACGCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (27 bp):
TCTCGATATTCACAATACATATACACG
Found at i:7929165 original size:53 final size:51
Alignment explanation
Indices: 7929008--7929182 Score: 237
Period size: 51 Copynumber: 3.4 Consensus size: 51
7928998 TTCACACTAC
*
7929008 AAAAATGTAACACTTAACACATACTTACACCGGTGTAAGTAAATAAAATAA
1 AAAAATGTAACACTTAACACATACTTACACCGATGTAAGTAAATAAAATAA
* * * * *
7929059 ACAAGTGTAACACTTAACACATAC-TACA-CTAGTATAAGTGAATAAAATAAAAA
1 AAAAATGTAACACTTAACACATACTTACACCGA-TGTAAGTAAATAAAAT---AA
*
7929112 AAAAATGTAGCACTTAACACATACTTACACCGATGTAAGTAAATAAAATAA
1 AAAAATGTAACACTTAACACATACTTACACCGATGTAAGTAAATAAAATAA
7929163 AAAAATGTAACACTTAACAC
1 AAAAATGTAACACTTAACAC
7929183 CAGGGACGGA
Statistics
Matches: 105, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
49 1 0.01
50 18 0.17
51 43 0.41
53 23 0.22
54 18 0.17
55 2 0.02
ACGTcount: A:0.52, C:0.16, G:0.09, T:0.23
Consensus pattern (51 bp):
AAAAATGTAACACTTAACACATACTTACACCGATGTAAGTAAATAAAATAA
Found at i:7929307 original size:17 final size:17
Alignment explanation
Indices: 7929285--7929328 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
7929275 ATGTAAAAAT
7929285 AAATATTTAAATTTAAA
1 AAATATTTAAATTTAAA
** **
7929302 AAATATAAAAATTTATT
1 AAATATTTAAATTTAAA
7929319 AAATATTTAA
1 AAATATTTAA
7929329 TCAAGTAGGG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATTTAAATTTAAA
Found at i:7930212 original size:19 final size:17
Alignment explanation
Indices: 7930168--7930214 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
7930158 TAAGATGAAT
* *
7930168 AGAATAGAGGGGATTAA
1 AGAAAAGAGAGGATTAA
7930185 AGAAAAGAGAGGATTAA
1 AGAAAAGAGAGGATTAA
7930202 AGAAAAGAGAGGA
1 AGAAAAGAGAGGA
7930215 ATAAGTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.55, C:0.00, G:0.34, T:0.11
Consensus pattern (17 bp):
AGAAAAGAGAGGATTAA
Found at i:7930574 original size:64 final size:63
Alignment explanation
Indices: 7930455--7930595 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 63
7930445 GAAATATGAT
* * *
7930455 GTGCATCGATGCACTCTTTAAAGAAGAAACATCGAATGCAAATGGTGCATTGATGCATAAGG-A
1 GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAAGGCAAATGGTGCATCGATGCAT-AGGTA
* * * * * *
7930518 GTGCATCGATGCATCCCTTTAAA-ATGAAAACATCGAAGGTAATTTGTGTATCGATGCATGGGTA
1 GTGCATCGATGCA-CCCTTTAAAGAAG-AAACATCGAAGGCAAATGGTGCATCGATGCATAGGTA
7930582 GTGCATCGATGCAC
1 GTGCATCGATGCAC
7930596 ATGTTAAAGA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
63 18 0.27
64 48 0.73
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAAGGCAAATGGTGCATCGATGCATAGGTA
Found at i:7930631 original size:20 final size:22
Alignment explanation
Indices: 7930583--7930640 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
7930573 GCATGGGTAG
7930583 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
*
7930607 TGCATCGATGCACTG-T-AGCA
1 TGCATCGATGCACTGTTAAGAA
7930627 TGCATCGATGCACT
1 TGCATCGATGCACT
7930641 TCAAGGGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 17 0.52
22 1 0.03
23 2 0.06
24 13 0.39
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:7932158 original size:31 final size:31
Alignment explanation
Indices: 7932120--7932184 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
7932110 AGAGTCGAGG
*
7932120 GTTTACCTATGTCTTTCGAGA-CATATGGACA
1 GTTTACCTAGGTCTTTCGAGATC-TATGGACA
* *
7932151 GTTTACCTAGGTTTTTCGGGATCTATGGACA
1 GTTTACCTAGGTCTTTCGAGATCTATGGACA
7932182 GTT
1 GTT
7932185 GTTGAGGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (31 bp):
GTTTACCTAGGTCTTTCGAGATCTATGGACA
Found at i:7932231 original size:29 final size:30
Alignment explanation
Indices: 7932176--7932241 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 30
7932166 TCGGGATCTA
* *
7932176 TGGACAGTTGTTGAGGTTCTTTATGACCTC
1 TGGATAGTTGTTGAGGGTCTTTATGACCTC
*
7932206 TGGATAGTTGTTG-GGGTCTTTGTGACCTC
1 TGGATAGTTGTTGAGGGTCTTTATGACCTC
7932235 TGGATAG
1 TGGATAG
7932242 GTCCTTCGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 21 0.64
30 12 0.36
ACGTcount: A:0.15, C:0.14, G:0.32, T:0.39
Consensus pattern (30 bp):
TGGATAGTTGTTGAGGGTCTTTATGACCTC
Found at i:7935461 original size:64 final size:63
Alignment explanation
Indices: 7935366--7935506 Score: 169
Period size: 64 Copynumber: 2.2 Consensus size: 63
7935356 CACATTGAAT
* *
7935366 GTGCATCGATGCACTCTTTAAAGAAGAAACATCGAATGCAAATGGTGCATCGATGCATAAGG-A
1 GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAATACAAATGGTGCATCGATGCAT-AGGTA
* * * * * *
7935429 GTGCATCGATGCATCCCTTTAAA-ATGAAAACATCGAATATAATTTGTGTATCGATGCATGGGTA
1 GTGCATCGATGCA-CCCTTTAAAGAAG-AAACATCGAATACAAATGGTGCATCGATGCATAGGTA
7935493 GTGCATCGATGCAC
1 GTGCATCGATGCAC
7935507 ATGTTAAAGA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
63 18 0.27
64 49 0.73
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAATACAAATGGTGCATCGATGCATAGGTA
Found at i:7935542 original size:20 final size:22
Alignment explanation
Indices: 7935494--7935551 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
7935484 GCATGGGTAG
7935494 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
*
7935518 TGCATCGATGCACTG-T-AGCA
1 TGCATCGATGCACTGTTAAGAA
7935538 TGCATCGATGCACT
1 TGCATCGATGCACT
7935552 TCAAGGGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 17 0.52
22 1 0.03
23 2 0.06
24 13 0.39
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:7936786 original size:19 final size:20
Alignment explanation
Indices: 7936750--7936788 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
7936740 TTTATATGTA
7936750 AAGATATGATGACAAGATAT
1 AAGATATGATGACAAGATAT
*
7936770 AAGATATG-TGACGAGATAT
1 AAGATATGATGACAAGATAT
7936789 CTGTAATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.46, C:0.05, G:0.23, T:0.26
Consensus pattern (20 bp):
AAGATATGATGACAAGATAT
Found at i:7937950 original size:31 final size:31
Alignment explanation
Indices: 7937888--7937952 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
7937878 AGAGTTGAGG
*
7937888 GTTTACCTATGTCTTTCGAGACATATAGACA
1 GTTTACCTAGGTCTTTCGAGACATATAGACA
* * *
7937919 GTTTACCTAGGT-TCTTCGGGACCTATGGACA
1 GTTTACCTAGGTCT-TTCGAGACATATAGACA
7937950 GTT
1 GTT
7937953 GCTAAGGTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (31 bp):
GTTTACCTAGGTCTTTCGAGACATATAGACA
Found at i:7938315 original size:2 final size:2
Alignment explanation
Indices: 7938308--7938354 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
7938298 GCATGACATG
7938308 AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7938349 AT AT AT
1 AT AT AT
7938355 GTTATATGGT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7939685 original size:22 final size:20
Alignment explanation
Indices: 7939655--7939697 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
7939645 CAAGTTTTCA
7939655 TATGCTTTTATGGCATGTTTTT
1 TATGCTTTTA--GCATGTTTTT
*
7939677 TATGTTTTTAGCATGTTTTT
1 TATGCTTTTAGCATGTTTTT
7939697 T
1 T
7939698 GGTTCTTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
22 9 0.45
ACGTcount: A:0.14, C:0.07, G:0.16, T:0.63
Consensus pattern (20 bp):
TATGCTTTTAGCATGTTTTT
Found at i:7943715 original size:14 final size:15
Alignment explanation
Indices: 7943696--7943727 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7943686 GAGTGTCTTG
7943696 TTCACATC-AGCATT
1 TTCACATCGAGCATT
7943710 TTCACATCGAGCATT
1 TTCACATCGAGCATT
7943725 TTC
1 TTC
7943728 GTATAAGCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.25, C:0.28, G:0.09, T:0.38
Consensus pattern (15 bp):
TTCACATCGAGCATT
Found at i:7944339 original size:20 final size:20
Alignment explanation
Indices: 7944310--7944359 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
7944300 CACCTTATAG
7944310 TATCGATACTGTTCTTCCAA
1 TATCGATACTGTTCTTCCAA
* *
7944330 TATCGTTACTGTTCTTCCAG
1 TATCGATACTGTTCTTCCAA
7944350 TATCGATACT
1 TATCGATACT
7944360 CAAACACAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (20 bp):
TATCGATACTGTTCTTCCAA
Found at i:7949313 original size:2 final size:2
Alignment explanation
Indices: 7949308--7949334 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7949298 GTTTTTTTTA
7949308 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7949335 ATAATAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7957513 original size:200 final size:199
Alignment explanation
Indices: 7957138--7957899 Score: 702
Period size: 201 Copynumber: 3.8 Consensus size: 199
7957128 GGTAGTTATA
* * * * * * * * *
7957138 GGCTTGATAGGCATGTTCGAGGGGATTTTCGAAAAATTGATATG-AAATTTTTCATAATTTATAA
1 GGCTTGATA-ACATGTTCGAAGGTATTTTCGGAAAGTTAATCTGAAAAATTTTCGTAATTTATAA
* ** * * * *
7957202 GATTAGTGGCGTAGTATTGGAGTTTATCTTTAAATTGA-GATCAATATCGACATATACAAGATAT
65 GATTAGAGGCGTAGTATTGGAACTTATCTTTAAATTGAGGCT-AATATCGAAACATACGAGATAT
** * * *
7957266 TGTAAGTCGGGTAAAAATAGCATTGAAAATGTTTCTAAAGATTGGTTTTGTGCATGAAGAAGAAA
129 TGTAAGAGGGGTAAAAATA-CATTGAAAATGGTTCTAAAGCTTGGTTTTGTGCATGAAGAAGAAG
*
7957331 TTAAAAT
193 CTAAAAT
7957338 GGCTTGATATACATGTTCGATAGGTATTTTCGGGAAA-TTAATCTGAAAAATTTT-GTAATTTAT
1 GGCTTGATA-ACATGTTCGA-AGGTATTTTC-GGAAAGTTAATCTGAAAAATTTTCGTAATTTAT
* *
7957401 AAGATTAGAGGTGTAGTATTGGAACTTTTCTTTAAATTGAGGCTAATATCGAAACATACGA-ATA
63 AAGATTAGAGGCGTAGTATTGGAACTTATCTTTAAATTGAGGCTAATATCGAAACATACGAGATA
* * **
7957465 TTGTAAGAGGGGTAAAAATCACATTGAAAATGGTTCCAAAGCTTGGTTTTGTACATGAAGCTGAA
128 TTGTAAGAGGGGTAAAAAT-ACATTGAAAATGGTTCTAAAGCTTGGTTTTGTGCATGAAGAAGAA
*
7957530 GCTAAAAA
192 GCTAAAAT
* * * * * * * *
7957538 GGCTTAATAAGCATATTTGAGGGTTATTTTTGGAAAGTTAATCT-AATATTTTTCATAATTTATA
1 GGCTTGATAA-CATGTTCGAAGG-TATTTTCGGAAAGTTAATCTGAAAAATTTTCGTAATTTATA
* * * * *
7957602 AGATTAGAAGTGTAGTATTGGAACTTATCTTTCAATTGAGGCAAATAT--AAGCACATACGAGAC
64 AGATTAGAGGCGTAGTATTGGAACTTATCTTTAAATTGAGGCTAATATCGAA--ACATACGAGAT
* * * * * *
7957665 ATTGT-AGACGGGGTAAAAATTACATTGAAAATTGTTATAAAACTTGGTTTTATGCGTGAAGAAT
127 ATTGTAAGA-GGGGTAAAAA-TACATTGAAAATGGTTCTAAAGCTTGGTTTTGTGCATGAAGAAG
7957729 AAGCTAAAAT
190 AAGCTAAAAT
* ** * ** *
7957739 GGCTTGATAGCAATGCCCGAAGGGTATTTTTC-AAAAGTTAAGATG-ACAATTTTCGTAATTTAT
1 GGCTTGATAAC-ATGTTCGAA-GGTA-TTTTCGGAAAGTTAATCTGAAAAATTTTCGTAATTTAT
* * * ** *
7957802 AAGATTAGAGGCGTAGTATTAGAACTTATCTTTCAATTGAGGTTAATATCGGCACATACGAGACA
63 AAGATTAGAGGCGTAGTATTGGAACTTATCTTTAAATTGAGGCTAATATCGAAACATACGAGATA
* * * * *
7957867 TTATAAG-TGGGTAAAATTGCATTAAAAATGGTT
128 TTGTAAGAGGGGTAAAAATACATTGAAAATGGTT
7957900 TGAAACAAAA
Statistics
Matches: 461, Mismatches: 80, Indels: 43
0.79 0.14 0.07
Matches are distributed among these distances:
198 2 0.00
199 28 0.06
200 182 0.39
201 227 0.49
202 22 0.05
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (199 bp):
GGCTTGATAACATGTTCGAAGGTATTTTCGGAAAGTTAATCTGAAAAATTTTCGTAATTTATAAG
ATTAGAGGCGTAGTATTGGAACTTATCTTTAAATTGAGGCTAATATCGAAACATACGAGATATTG
TAAGAGGGGTAAAAATACATTGAAAATGGTTCTAAAGCTTGGTTTTGTGCATGAAGAAGAAGCTA
AAAT
Found at i:7961913 original size:26 final size:26
Alignment explanation
Indices: 7961855--7961916 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
7961845 TATTTTTTAA
7961855 ATTA-TAATTTTATTAATAAAGATTT
1 ATTATTAATTTTATTAATAAAGATTT
* * *
7961880 ATTTTTAATTTTATTAATAAGGGTTT
1 ATTATTAATTTTATTAATAAAGATTT
7961906 -TATATTAATTT
1 AT-TATTAATTT
7961917 ATGATTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 4 0.13
26 27 0.87
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.56
Consensus pattern (26 bp):
ATTATTAATTTTATTAATAAAGATTT
Found at i:7962467 original size:22 final size:22
Alignment explanation
Indices: 7962410--7962468 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
7962400 ACGTGATTCT
7962410 GACTATCGCATTGCGATTTTCC
1 GACTATCGCATTGCGATTTTCC
* * *
7962432 AAAT-TCGCGTTGCGATTTTCC
1 GACTATCGCATTGCGATTTTCC
*
7962453 GACTATCGCAATGCGA
1 GACTATCGCATTGCGA
7962469 ATATGTAACA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
GACTATCGCATTGCGATTTTCC
Found at i:7962502 original size:20 final size:20
Alignment explanation
Indices: 7962479--7962530 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
7962469 ATATGTAACA
7962479 CGCAACGCGATTCTGACTAT
1 CGCAACGCGATTCTGACTAT
* *
7962499 CGCAACGTGATGCTGACTAT
1 CGCAACGCGATTCTGACTAT
*
7962519 CGCAATGCGATT
1 CGCAACGCGATT
7962531 TTCAAAGCGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (20 bp):
CGCAACGCGATTCTGACTAT
Found at i:7962732 original size:22 final size:22
Alignment explanation
Indices: 7962706--7962748 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7962696 GGCGACATCC
* *
7962706 GTCCCCATCTCTGACGAAATCA
1 GTCCCCACCTCCGACGAAATCA
*
7962728 GTCCCCACCTCCGGCGAAATC
1 GTCCCCACCTCCGACGAAATC
7962749 CGTCTATCTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.42, G:0.16, T:0.19
Consensus pattern (22 bp):
GTCCCCACCTCCGACGAAATCA
Found at i:7963224 original size:20 final size:20
Alignment explanation
Indices: 7963135--7963241 Score: 110
Period size: 20 Copynumber: 5.5 Consensus size: 20
7963125 ATAATTGCAA
*
7963135 TGCGATTTT-AGTTTCGCGT
1 TGCGATTTTCATTTTCGCGT
*
7963154 TGCGATTTTTA-TTTCGCGT
1 TGCGATTTTCATTTTCGCGT
** **
7963173 TGCGATAGTCAAATTCGCGT
1 TGCGATTTTCATTTTCGCGT
** *
7963193 TGCGATAGTCATTTTCGTGT
1 TGCGATTTTCATTTTCGCGT
*
7963213 TGCGATTTTCATTTTCGTGT
1 TGCGATTTTCATTTTCGCGT
7963233 TGCGATTTT
1 TGCGATTTT
7963242 AAGTTTCAGA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
19 25 0.32
20 52 0.68
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.47
Consensus pattern (20 bp):
TGCGATTTTCATTTTCGCGT
Found at i:7965173 original size:20 final size:20
Alignment explanation
Indices: 7965148--7965195 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
7965138 TAATTTACTT
7965148 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
* **
7965168 TCGCAACGTGAATTTGACTA
1 TCGCAACGCGAAAATGACTA
7965188 TCGCAACG
1 TCGCAACG
7965196 AAAGAATCGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:7965280 original size:18 final size:19
Alignment explanation
Indices: 7965238--7965284 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
7965228 GCGATTCTCT
*
7965238 CGTTACGATAGTCAAATTCG
1 CGTTGCGATAGTC-AATTCG
7965258 CGTTGCGATAGTC-ATTCG
1 CGTTGCGATAGTCAATTCG
*
7965276 TGTTGCGAT
1 CGTTGCGAT
7965285 TTTAAGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 13 0.52
20 12 0.48
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (19 bp):
CGTTGCGATAGTCAATTCG
Found at i:7967453 original size:20 final size:21
Alignment explanation
Indices: 7967403--7967458 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
7967393 GTACACTTTT
*
7967403 GCAACGCTAAA-CTCAAAATC
1 GCAACGCGAAAGCTCAAAATC
* *
7967423 GCAATGTGAAAGC-CAAAATC
1 GCAACGCGAAAGCTCAAAATC
7967443 GCAACGCGAAAG-TCAA
1 GCAACGCGAAAGCTCAA
7967459 TTCGTGTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.45, C:0.25, G:0.18, T:0.12
Consensus pattern (21 bp):
GCAACGCGAAAGCTCAAAATC
Found at i:7967522 original size:20 final size:20
Alignment explanation
Indices: 7967497--7967733 Score: 246
Period size: 20 Copynumber: 12.4 Consensus size: 20
7967487 GCGATTTTCT
** *
7967497 CGTTGCGATAGTCAAAGACC
1 CGTTGCGATAGTCAAATTCG
* *
7967517 CGTTGCGATAATCAAATTCA
1 CGTTGCGATAGTCAAATTCG
7967537 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
7967557 CGTTGCGAT--T----TTCT
1 CGTTGCGATAGTCAAATTCG
* *
7967571 CGTTGCGATAGTCAAATACC
1 CGTTGCGATAGTCAAATTCG
*
7967591 CGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCG
7967611 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
7967631 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* *
7967651 CGTTGCGATAGACAATTTCG
1 CGTTGCGATAGTCAAATTCG
* *
7967671 CGTTGCGCT--T----TTTG
1 CGTTGCGATAGTCAAATTCG
* *
7967685 CTTTGCGATAGTCATATTCG
1 CGTTGCGATAGTCAAATTCG
*
7967705 TGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
7967725 CGTTGCGAT
1 CGTTGCGAT
7967734 TTTTGAGTTA
Statistics
Matches: 180, Mismatches: 25, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
14 22 0.12
16 2 0.01
18 1 0.01
20 155 0.86
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:7967523 original size:34 final size:34
Alignment explanation
Indices: 7967485--7967599 Score: 140
Period size: 34 Copynumber: 3.2 Consensus size: 34
7967475 CTAATATGCT
*
7967485 TTGCGATTTTCTCGTTGCGATAGTCAAAGACCCG
1 TTGCGATTTTCTCGTTGCGATAGTCAAATACCCG
* * *
7967519 TTGCGATAATCAAATTCACGTTGCGATAGTCAAATTCGCG
1 TTGCGAT--T----TTCTCGTTGCGATAGTCAAATACCCG
7967559 TTGCGATTTTCTCGTTGCGATAGTCAAATACCCG
1 TTGCGATTTTCTCGTTGCGATAGTCAAATACCCG
7967593 TTGCGAT
1 TTGCGAT
7967600 AATCAAATTC
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
34 37 0.54
36 1 0.01
38 1 0.01
40 29 0.43
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (34 bp):
TTGCGATTTTCTCGTTGCGATAGTCAAATACCCG
Found at i:7967578 original size:74 final size:74
Alignment explanation
Indices: 7967485--7967639 Score: 292
Period size: 74 Copynumber: 2.1 Consensus size: 74
7967475 CTAATATGCT
7967485 TTGCGATTTTCTCGTTGCGATAGTCAAAGACCCGTTGCGATAATCAAATTCACGTTGCGATAGTC
1 TTGCGATTTTCTCGTTGCGATAGTCAAAGACCCGTTGCGATAATCAAATTCACGTTGCGATAGTC
7967550 AAATTCGCG
66 AAATTCGCG
* *
7967559 TTGCGATTTTCTCGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCGTTGCGATAGTC
1 TTGCGATTTTCTCGTTGCGATAGTCAAAGACCCGTTGCGATAATCAAATTCACGTTGCGATAGTC
7967624 AAATTCGCG
66 AAATTCGCG
7967633 TTGCGAT
1 TTGCGAT
7967640 AGTCAAATTC
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
74 79 1.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (74 bp):
TTGCGATTTTCTCGTTGCGATAGTCAAAGACCCGTTGCGATAATCAAATTCACGTTGCGATAGTC
AAATTCGCG
Found at i:7967579 original size:54 final size:54
Alignment explanation
Indices: 7967517--7967775 Score: 295
Period size: 54 Copynumber: 4.7 Consensus size: 54
7967507 GTCAAAGACC
* *
7967517 CGTTGCGATAATCAAATTCACGTTGCGATAGTCAAATTCGCGTTGCGATTTTCT-
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTT-TG
* * * *
7967571 CGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGAT--T----TTTG
* * *
7967631 CGTTGCGATAGTCAAATTCGCGTTGCGATAGACAATTTCGCGTTGCGCTTTTTG
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
* * *
7967685 CTTTGCGATAGTCATATTCGTGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
* * * * *
7967739 AGTTACGATAATCAAATTTGCGTTGCGATATTCAAAT
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAAT
7967776 GAATGTGTAA
Statistics
Matches: 172, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
54 125 0.73
56 1 0.01
58 1 0.01
60 45 0.26
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (54 bp):
CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
Found at i:7967759 original size:74 final size:75
Alignment explanation
Indices: 7967596--7967775 Score: 185
Period size: 74 Copynumber: 2.4 Consensus size: 75
7967586 ATACCCGTTG
*
7967596 CGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATA
1 CGATAATCAAATTTGCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGAT-
* *
7967661 GACAATTTCGCGTTG
65 ----ATTTCGAGTTA
* * * *
7967676 CGCT--T----TTTGCTTTGCGATAGTCATATTCGTGTTGCGATAGTCAAATTCGCGTTGCGAT-
1 CGATAATCAAATTTGCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATA
*
7967734 TTTTGAGTTA
66 TTTCGAGTTA
*
7967744 CGATAATCAAATTTGCGTTGCGATATTCAAAT
1 CGATAATCAAATTTGCGTTGCGATAGTCAAAT
7967776 GAATGTGTAA
Statistics
Matches: 82, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
68 10 0.12
70 1 0.01
74 67 0.82
78 1 0.01
80 3 0.04
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (75 bp):
CGATAATCAAATTTGCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATA
TTTCGAGTTA
Found at i:7970373 original size:24 final size:24
Alignment explanation
Indices: 7970339--7970392 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
7970329 CTGAAACATC
7970339 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
7970363 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
7970387 ATCAAA
1 ATCAAA
7970393 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:7971238 original size:20 final size:20
Alignment explanation
Indices: 7971213--7971264 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
7971203 GAAATTCAGT
7971213 GTTGCGACAGTCAGAATCGC
1 GTTGCGACAGTCAGAATCGC
7971233 GTTGCGACAGTCAGAATCGC
1 GTTGCGACAGTCAGAATCGC
7971253 GTTGCGACAGTC
1 GTTGCGACAGTC
7971265 GTAAAATCGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.21
Consensus pattern (20 bp):
GTTGCGACAGTCAGAATCGC
Found at i:7978230 original size:32 final size:32
Alignment explanation
Indices: 7978171--7978235 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
7978161 CTAAGAAGTC
* *
7978171 TTAATAGCTAATGTCATCCTTTGTAATCTTGT
1 TTAATAGCTAATGCCATCATTTGTAATCTTGT
*
7978203 TTAATAGCTAATGCCAT-ATTCTTTAATCTTGT
1 TTAATAGCTAATGCCATCATT-TGTAATCTTGT
7978235 T
1 T
7978236 GTTTAAGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 2 0.07
32 27 0.93
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (32 bp):
TTAATAGCTAATGCCATCATTTGTAATCTTGT
Found at i:7984339 original size:21 final size:21
Alignment explanation
Indices: 7984293--7984340 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
7984283 CCTCAATATG
7984293 TTCTCCTTCTTCTTCTTCTCC
1 TTCTCCTTCTTCTTCTTCTCC
*
7984314 CTCTCC-TCTCTCTTCTTC-CTC
1 TTCTCCTTCT-TCTTCTTCTC-C
7984335 TTCTCC
1 TTCTCC
7984341 AACTTGCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (21 bp):
TTCTCCTTCTTCTTCTTCTCC
Found at i:7991661 original size:151 final size:151
Alignment explanation
Indices: 7991387--7991678 Score: 548
Period size: 151 Copynumber: 1.9 Consensus size: 151
7991377 GAAGGCATCA
7991387 AGGAAGGAGCAGATCAAAGTGAAGATGCTGGTTGCCGACGACGGGACCATGTCCGAGGTTATTGT
1 AGGAAGGAGCAGATCAAAGTGAAGATGCTGGTTGCCGACGACGGGACCATGTCCGAGGTTATTGT
*
7991452 TCAAGGAGATGATCAGCAAGTAGATCAAATGAGAAAAGAACTAAGCTTAGTGAAAAAGGCATGGT
66 TCAAGGAAATGATCAGCAAGTAGATCAAATGAGAAAAGAACTAAGCTTAGTGAAAAAGGCATGGT
7991517 CTATGTAAAGGAAGATGATCC
131 CTATGTAAAGGAAGATGATCC
* *
7991538 AGGAAGGAGCAGATCAAAGTGAATATGCTGGTTGCCGACGACGGGACCATGTCCGAGGTTGTTGT
1 AGGAAGGAGCAGATCAAAGTGAAGATGCTGGTTGCCGACGACGGGACCATGTCCGAGGTTATTGT
*
7991603 TCAAGGAAATGATCAGCAAGTAGATCAAATGAGGAAAGAACTAAGCTTAGTGAAAAAGGCATGGT
66 TCAAGGAAATGATCAGCAAGTAGATCAAATGAGAAAAGAACTAAGCTTAGTGAAAAAGGCATGGT
7991668 CTATGTAAAGG
131 CTATGTAAAGG
7991679 GCTTATTCGA
Statistics
Matches: 137, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 137 1.00
ACGTcount: A:0.36, C:0.14, G:0.30, T:0.20
Consensus pattern (151 bp):
AGGAAGGAGCAGATCAAAGTGAAGATGCTGGTTGCCGACGACGGGACCATGTCCGAGGTTATTGT
TCAAGGAAATGATCAGCAAGTAGATCAAATGAGAAAAGAACTAAGCTTAGTGAAAAAGGCATGGT
CTATGTAAAGGAAGATGATCC
Found at i:7992065 original size:17 final size:17
Alignment explanation
Indices: 7992014--7992066 Score: 58
Period size: 15 Copynumber: 3.3 Consensus size: 17
7992004 TAAGAGAATC
7992014 ATTTTGTGG-GGTTATG
1 ATTTTGTGGAGGTTATG
* *
7992030 ATTTT-T-GAGTTTTTG
1 ATTTTGTGGAGGTTATG
*
7992045 ATTTTGTGGAGGATATG
1 ATTTTGTGGAGGTTATG
7992062 ATTTT
1 ATTTT
7992067 TAATGGGTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
14 1 0.03
15 11 0.38
16 6 0.21
17 11 0.38
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.55
Consensus pattern (17 bp):
ATTTTGTGGAGGTTATG
Found at i:7992090 original size:48 final size:50
Alignment explanation
Indices: 7992024--7992154 Score: 149
Period size: 48 Copynumber: 2.7 Consensus size: 50
7992014 ATTTTGTGGG
* * *
7992024 GTTATGATTTTTGAGTTTTTGATTTTGTGGAGGATATGATTTTTAATGG-
1 GTTATGATATTTGGGTTTTTGATTTTGTGGAGGATATGATTTTCAATGGA
* * * **
7992073 GTTGT-ATATTTGGGTTTTTAATTTTGTAGAGTTTATGATTTTCAATGGA
1 GTTATGATATTTGGGTTTTTGATTTTGTGGAGGATATGATTTTCAATGGA
* * *
7992122 GTTATGATTTTTGGGTTTTTGTTTTTTTGGAGG
1 GTTATGATATTTGGGTTTTTGATTTTGTGGAGG
7992155 TTAGGGTTTC
Statistics
Matches: 65, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
48 36 0.55
49 8 0.12
50 21 0.32
ACGTcount: A:0.18, C:0.01, G:0.26, T:0.55
Consensus pattern (50 bp):
GTTATGATATTTGGGTTTTTGATTTTGTGGAGGATATGATTTTCAATGGA
Found at i:7993386 original size:91 final size:91
Alignment explanation
Indices: 7993231--7993405 Score: 341
Period size: 91 Copynumber: 1.9 Consensus size: 91
7993221 GTAAATGGTT
*
7993231 ATGTAACACCTCCAACCCGTATCCGACCCGGATACGAGTCCGAAGTGTCACATTGACTTTTTAAA
1 ATGTAACACCCCCAACCCGTATCCGACCCGGATACGAGTCCGAAGTGTCACATTGACTTTTTAAA
7993296 CATTCATTCGTATAAAATACCATTAA
66 CATTCATTCGTATAAAATACCATTAA
7993322 ATGTAACACCCCCAACCCGTATCCGACCCGGATACGAGTCCGAAGTGTCACATTGACTTTTTAAA
1 ATGTAACACCCCCAACCCGTATCCGACCCGGATACGAGTCCGAAGTGTCACATTGACTTTTTAAA
7993387 CATTCATTCGTATAAAATA
66 CATTCATTCGTATAAAATA
7993406 GTGGGTAATT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 83 1.00
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.27
Consensus pattern (91 bp):
ATGTAACACCCCCAACCCGTATCCGACCCGGATACGAGTCCGAAGTGTCACATTGACTTTTTAAA
CATTCATTCGTATAAAATACCATTAA
Found at i:7994082 original size:31 final size:31
Alignment explanation
Indices: 7994044--7994199 Score: 242
Period size: 31 Copynumber: 5.0 Consensus size: 31
7994034 CCCGAAGGAC
* * *
7994044 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
7994075 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
7994106 CAGTCCGTATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
7994137 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
7994168 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
7994199 C
1 C
7994200 CCTCGACCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 114 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:7994441 original size:23 final size:24
Alignment explanation
Indices: 7994415--7994461 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
7994405 ATATACTTGT
*
7994415 TTTCACATATATA-TTTCATATCA
1 TTTCACATATACACTTTCATATCA
7994438 TTTCACATATACACTTTCATATCA
1 TTTCACATATACACTTTCATATCA
7994462 CATGCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (24 bp):
TTTCACATATACACTTTCATATCA
Found at i:7995028 original size:21 final size:21
Alignment explanation
Indices: 7994998--7995042 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7994988 ATTCTGTCGT
* *
7994998 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
7995019 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
7995040 TTG
1 TTG
7995043 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:7996054 original size:32 final size:32
Alignment explanation
Indices: 7995998--7996085 Score: 86
Period size: 32 Copynumber: 2.8 Consensus size: 32
7995988 AAAATAACCT
** *
7995998 GAACTGAAAGTAATTCAAATCGAATTTAAGTC
1 GAACTGAAAGTAACCCAAACCGAATTTAAGTC
* **
7996030 GAACTGAAAGTAACCCGAACCGAATTTAACCC
1 GAACTGAAAGTAACCCAAACCGAATTTAAGTC
* ** *
7996062 GATCCAAAAGTAATCCAAACCGAA
1 GAACTGAAAGTAACCCAAACCGAA
7996086 AATCTATACC
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.44, C:0.22, G:0.15, T:0.19
Consensus pattern (32 bp):
GAACTGAAAGTAACCCAAACCGAATTTAAGTC
Found at i:7997043 original size:49 final size:48
Alignment explanation
Indices: 7996977--7997069 Score: 168
Period size: 49 Copynumber: 1.9 Consensus size: 48
7996967 GGGGTGGGGG
7996977 AAGCTTAATTGGTCCGTTGACCACCACGCAAAAGAACCCTTGTGTGGGA
1 AAGCTTAATTGGTCCGTTGACCACCACGCAAAAGAACCC-TGTGTGGGA
*
7997026 AAGCTTAATTGGTCCGTTGACCACCCCGCAAAAGAACCCTGTGT
1 AAGCTTAATTGGTCCGTTGACCACCACGCAAAAGAACCCTGTGT
7997070 TCAACAGTCA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 5 0.12
49 38 0.88
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (48 bp):
AAGCTTAATTGGTCCGTTGACCACCACGCAAAAGAACCCTGTGTGGGA
Found at i:8002863 original size:25 final size:25
Alignment explanation
Indices: 8002834--8002900 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 25
8002824 GTCTAAATGG
* *
8002834 ACATCATTTTGCTTTATAAATCTTT
1 ACATCATTTTGCTTCACAAATCTTT
*
8002859 ACATCATTTTGCCTTCCCAAATCTTT
1 ACATCATTTTG-CTTCACAAATCTTT
8002885 ACATCATTTTGCTTCA
1 ACATCATTTTGCTTCA
8002901 ATTGTGATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 15 0.41
26 22 0.59
ACGTcount: A:0.25, C:0.24, G:0.04, T:0.46
Consensus pattern (25 bp):
ACATCATTTTGCTTCACAAATCTTT
Found at i:8003134 original size:18 final size:18
Alignment explanation
Indices: 8003113--8003162 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
8003103 TTTTAGTTTT
8003113 TTATATTATATATTTATG
1 TTATATTATATATTTATG
* *
8003131 TTAT-TAACATTATTTATG
1 TTATATTATA-TATTTATG
8003149 TTATATATATATAT
1 TTATAT-TATATAT
8003163 ACAATCTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
17 3 0.12
18 16 0.64
19 4 0.16
20 2 0.08
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (18 bp):
TTATATTATATATTTATG
Found at i:8003594 original size:23 final size:23
Alignment explanation
Indices: 8003533--8003609 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 23
8003523 ATTTATATCA
8003533 TTTATTATTTATTATTTTTCTTTCAT
1 TTTA-TATTTATTA-TTTTCTTT-AT
*
8003559 ATTTGTACTTTTATTATTTTCTTTAT
1 -TTTATA--TTTATTATTTTCTTTAT
* *
8003585 TTTATATTTAATATTTT-ATTAT
1 TTTATATTTATTATTTTCTTTAT
8003607 TTT
1 TTT
8003610 TGATAATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
22 7 0.16
23 10 0.23
25 5 0.11
26 4 0.09
27 11 0.25
28 7 0.16
ACGTcount: A:0.22, C:0.05, G:0.01, T:0.71
Consensus pattern (23 bp):
TTTATATTTATTATTTTCTTTAT
Found at i:8003675 original size:22 final size:22
Alignment explanation
Indices: 8003623--8003679 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
8003613 TAATTTTAGG
*
8003623 ATTTATATCTTTTCGTATTTAT
1 ATTTATATCTTTTCGGATTTAT
*
8003645 TTTTCATATCTTTT-GGATTTAT
1 ATTT-ATATCTTTTCGGATTTAT
8003667 CATTTATAT-TTTT
1 -ATTTATATCTTTT
8003680 AATTACTTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 4 0.13
22 14 0.47
23 12 0.40
ACGTcount: A:0.21, C:0.09, G:0.05, T:0.65
Consensus pattern (22 bp):
ATTTATATCTTTTCGGATTTAT
Found at i:8005969 original size:18 final size:19
Alignment explanation
Indices: 8005929--8005973 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
8005919 ACAAAGACAA
* *
8005929 ATAAATGTATCATAAAAAT
1 ATAAATATATCATAAAAAC
8005948 ATAAATATATCA-AAAAAC
1 ATAAATATATCATAAAAAC
8005966 ATAAATAT
1 ATAAATAT
8005974 CCTTATATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (19 bp):
ATAAATATATCATAAAAAC
Found at i:8005983 original size:8 final size:8
Alignment explanation
Indices: 8005970--8005995 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
8005960 AAAAACATAA
8005970 ATATCCTT
1 ATATCCTT
8005978 ATATCCTT
1 ATATCCTT
8005986 ATATCCTT
1 ATATCCTT
8005994 AT
1 AT
8005996 GGTCATAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATCCTT
Found at i:8012308 original size:321 final size:323
Alignment explanation
Indices: 8011724--8012358 Score: 956
Period size: 321 Copynumber: 2.0 Consensus size: 323
8011714 ATCGGTTAAA
*
8011724 GTTCAAAAATTTTCTTTGAATGATTAAAGAAAGGGCAAACTACACTAGCGACCATTTAACTATTG
1 GTTCAAAAATTTTCTTAGAATGATTAAAGAAAGGGCAAACTACACTAGCGACCATTTAACTATTG
* * * * * *
8011789 TCAAATTTAATTTTGATGACCAGTATTTCAATTTAATAAATGAGACCATCTAACTATTTAAACGC
66 ACAAATTTAATTTTGATAACCAGTATTTCAATTTAATAAATCAAACCACCTAACTATTTAAACAC
* *
8011854 TTCAATTAAGCCACATGTCGTTAACATAAAACAGAGTAGGTGATGTGCAATTAAAACATTTTGGT
131 TTCAATCAAGCCACATGTCGTTAACATAAAACAGAGTAGGTGATGCGCAATTAAAACATTTTGGT
** *
8011919 ACAATTACACAATTGGTGTATGTTACTTATATATTCTTTCAATTTAATCTTAATTTTAAAAAATT
196 ACAATTACACAATTGGTGTACATTACTTATATATTCTTTCAATTTAATCATAATTTTAAAAAATT
* *
8011984 AAAATAAATTTAATCCTCAAATCAAATAATCACACAAATAATTAAAATCACACACACAAGGGG
261 AAAATAAATTTAATCATCAAATCAAATAATAACACAAATAATTAAAATCACACACACAAGGGG
* * * **
8012047 GTTCAAAATTTTTCTTAGTATGATTGAAA-AAAGGGTAAACTACACTAGCGATTATTTAACTATT
1 GTTCAAAAATTTTCTTAGAATGATT-AAAGAAAGGGCAAACTACACTAGCGACCATTTAACTATT
* * * *
8012111 -ACAGATTTTATTTTGATAACC-GATATTTTAATTTAATCAATCAAACCACCTAACTATTTAAAC
65 GACAAATTTAATTTTGATAACCAG-TATTTCAATTTAATAAATCAAACCACCTAACTATTTAAAC
* *
8012174 ACTTCAATCAAGCCACATGTCGTTAACAT-TAACGGAGTAGGTGATGCGCAATTAAAACATTTTG
129 ACTTCAATCAAGCCACATGTCGTTAACATAAAACAGAGTAGGTGATGCGCAATTAAAACATTTTG
* * *
8012238 GTAGAATTACACAATTGGAT-TACATTACTTATATATTCTTTCAATTTAGTCATAATTTTAAAAT
194 GTACAATTACACAATTGG-TGTACATTACTTATATATTCTTTCAATTTAATCATAATTTTAAAAA
8012302 ATTAAAATAAATTTAATCATCAAATCAAATAATAACACAAATAATTAAAATCACACA
258 ATTAAAATAAATTTAATCATCAAATCAAATAATAACACAAATAATTAAAATCACACA
8012359 TAAGGGGAGC
Statistics
Matches: 281, Mismatches: 28, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
321 144 0.51
322 80 0.28
323 54 0.19
324 3 0.01
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (323 bp):
GTTCAAAAATTTTCTTAGAATGATTAAAGAAAGGGCAAACTACACTAGCGACCATTTAACTATTG
ACAAATTTAATTTTGATAACCAGTATTTCAATTTAATAAATCAAACCACCTAACTATTTAAACAC
TTCAATCAAGCCACATGTCGTTAACATAAAACAGAGTAGGTGATGCGCAATTAAAACATTTTGGT
ACAATTACACAATTGGTGTACATTACTTATATATTCTTTCAATTTAATCATAATTTTAAAAAATT
AAAATAAATTTAATCATCAAATCAAATAATAACACAAATAATTAAAATCACACACACAAGGGG
Found at i:8012643 original size:29 final size:28
Alignment explanation
Indices: 8012611--8012725 Score: 83
Period size: 29 Copynumber: 4.0 Consensus size: 28
8012601 ACGTTTAATC
*
8012611 TTATCTTCACTTAAAAGTATATTTTATTA
1 TTATCTTAACTTAAAA-TATATTTTATTA
* *
8012640 TTAT-TCTAATTTAAAATAATATTTTATTC
1 TTATCT-TAACTTAAAAT-ATATTTTATTA
* * *
8012669 TTACCTTAACTTTTAAAA-AGAATTTT-TAAA
1 TTATCTTAAC--TTAAAATA-TATTTTAT-TA
*
8012699 ATATCTTAACTTAAAATATATTTTATT
1 TTATCTTAACTTAAAATATATTTTATT
8012726 CTAAGTTGAA
Statistics
Matches: 65, Mismatches: 12, Indels: 19
0.68 0.12 0.20
Matches are distributed among these distances:
28 13 0.20
29 32 0.49
30 14 0.22
31 6 0.09
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (28 bp):
TTATCTTAACTTAAAATATATTTTATTA
Found at i:8013057 original size:18 final size:20
Alignment explanation
Indices: 8013034--8013071 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
8013024 TATTATAATT
8013034 TTAAAAAATT-TAT-TTAAA
1 TTAAAAAATTATATATTAAA
8013052 TTAAAAAATTATATATTAAA
1 TTAAAAAATTATATATTAAA
8013072 AAAAACCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 3 0.17
20 5 0.28
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TTAAAAAATTATATATTAAA
Found at i:8013727 original size:30 final size:30
Alignment explanation
Indices: 8013697--8013821 Score: 116
Period size: 29 Copynumber: 4.3 Consensus size: 30
8013687 AAAAATATAT
* *
8013697 TTTTTAA-AAATTAATATAAAAATAAAATA
1 TTTTTAATAAGTTAAGATAAAAATAAAATA
* * *
8013726 -TTTTAATAAGCTAAGACAAAAATAAAACA
1 TTTTTAATAAGTTAAGATAAAAATAAAATA
*
8013755 TATTTAATAAGTTAAGATAAAAATAAAATATA
1 TTTTTAATAAGTTAAGATAAAAAT-AAA-ATA
* *
8013787 TTTTTAA-AATTTAAGAT--ATATAAAATA
1 TTTTTAATAAGTTAAGATAAAAATAAAATA
*
8013814 TTATTAAT
1 TTTTTAAT
8013822 TTTGAATAAA
Statistics
Matches: 78, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
27 9 0.12
28 9 0.12
29 20 0.26
30 20 0.26
31 12 0.15
32 8 0.10
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (30 bp):
TTTTTAATAAGTTAAGATAAAAATAAAATA
Found at i:8014830 original size:20 final size:21
Alignment explanation
Indices: 8014805--8014856 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
8014795 TTTTCCCAAT
*
8014805 TCGCAATGCGAATAAG-TAAA
1 TCGCAATGCGAATAAGAAAAA
* **
8014825 TCGCAACGCGAATTGGAAAAA
1 TCGCAATGCGAATAAGAAAAA
8014846 TCGCAATGCGA
1 TCGCAATGCGA
8014857 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATAAGAAAAA
Found at i:8014873 original size:20 final size:20
Alignment explanation
Indices: 8014845--8014958 Score: 140
Period size: 20 Copynumber: 5.7 Consensus size: 20
8014835 AATTGGAAAA
8014845 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
8014865 ATCGTAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
8014885 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
* *
8014905 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
8014926 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* *
8014946 TTCGCAACGCGAT
1 ATCGCAATGCGAT
8014959 TTACATAGCG
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.79
21 13 0.16
22 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:8015632 original size:19 final size:19
Alignment explanation
Indices: 8015601--8015751 Score: 80
Period size: 19 Copynumber: 8.7 Consensus size: 19
8015591 CGAAATTAAA
8015601 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
8015620 TTCGCGTTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
8015635 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
8015653 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
8015667 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
8015686 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
8015701 -TCTCGTTGTGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
8015719 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
8015738 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
8015752 AGACATTAAG
Statistics
Matches: 95, Mismatches: 21, Indels: 31
0.65 0.14 0.21
Matches are distributed among these distances:
14 28 0.29
16 6 0.06
17 6 0.06
19 45 0.47
20 10 0.11
ACGTcount: A:0.15, C:0.22, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:8015647 original size:33 final size:32
Alignment explanation
Indices: 8015605--8015731 Score: 175
Period size: 33 Copynumber: 3.9 Consensus size: 32
8015595 ATTAAATTCG
*
8015605 CGTTGCGATTTTCATTTCGCGTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
**
8015638 CGTTGCGATTTTCATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
8015671 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
*
8015704 CGTTGTGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
8015732 AGTAATTTCC
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
31 3 0.04
33 78 0.93
35 3 0.04
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:8015696 original size:66 final size:66
Alignment explanation
Indices: 8015598--8015730 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
8015588 ACGCGAAATT
* *
8015598 AAATTCGCGTTGCGATTTTCATTTCGCGTTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
8015663 G
66 G
* *
8015664 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGTGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
8015729 G
66 G
8015730 A
1 A
8015731 TAGTAATTTC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.16, C:0.22, G:0.20, T:0.42
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:8018596 original size:19 final size:19
Alignment explanation
Indices: 8018515--8018619 Score: 95
Period size: 20 Copynumber: 5.4 Consensus size: 19
8018505 TAGTTTACTT
* *
8018515 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
8018535 TCGCAACGCGAAAATGACTA
1 TCGCAACGCG-AAATGAAAA
***
8018555 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
8018575 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
8018594 TCGCAACGCGGAATG-AAA
1 TCGCAACGCGAAATGAAAA
8018612 TCGCAACG
1 TCGCAACG
8018620 ACAAAATCGC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
18 11 0.15
19 20 0.28
20 37 0.51
21 4 0.06
ACGTcount: A:0.40, C:0.24, G:0.22, T:0.14
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:8018686 original size:14 final size:14
Alignment explanation
Indices: 8018667--8018724 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
8018657 TTTCATTTCG
8018667 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
8018681 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
8018697 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
8018713 CGTTGCGATTTT
1 CGTTGCGATTTT
8018725 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:8018731 original size:33 final size:33
Alignment explanation
Indices: 8018650--8018740 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
8018640 ACAAATCGCA
*
8018650 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
8018683 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
8018715 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
8018741 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:8018759 original size:20 final size:19
Alignment explanation
Indices: 8018725--8018779 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
8018715 TTGCGATTTT
*
8018725 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
8018744 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
8018764 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
8018780 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:8019287 original size:18 final size:18
Alignment explanation
Indices: 8019261--8019305 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
8019251 GTCGATCAGA
*
8019261 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
8019279 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
8019297 TGATGGCTC
1 TGATGGCTC
8019306 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:8020967 original size:22 final size:22
Alignment explanation
Indices: 8020940--8020983 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8020930 GATGGAGATA
8020940 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
8020962 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
8020984 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:8021277 original size:20 final size:20
Alignment explanation
Indices: 8021171--8021285 Score: 97
Period size: 20 Copynumber: 5.7 Consensus size: 20
8021161 GATTATGTAT
* *
8021171 TATCGCGTTGTGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* *
8021191 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* * *
8021211 TATCGCGTTGCAAAAGTAAG
1 TATCGCGTTGCGATAGTCAG
* * *
8021231 TATCTCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
*
8021252 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
8021272 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
8021286 TTTCCCAATT
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
19 3 0.04
20 61 0.78
21 12 0.15
22 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:8021288 original size:41 final size:41
Alignment explanation
Indices: 8021151--8021286 Score: 141
Period size: 41 Copynumber: 3.3 Consensus size: 41
8021141 CGCTTTGAAA
* *
8021151 ATCGCATTGCGATTATGTATTATCGCGTTGTGAAAGTCAGA
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
* * * * *
8021192 ATCGCGTTGCGA--AAGTCAGTATCGCGTTGCAAAAGTAAGT
1 ATCGCATTGCGATTATGT-ATTATCGCGTTGCGAAAGTCAGT
* * * * *
8021232 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
8021273 ATCGCATTGCGATT
1 ATCGCATTGCGATT
8021287 TTCCCAATTC
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.04
40 29 0.39
41 41 0.55
42 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (41 bp):
ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
Found at i:8021304 original size:41 final size:41
Alignment explanation
Indices: 8021274--8021366 Score: 141
Period size: 41 Copynumber: 2.3 Consensus size: 41
8021264 ATAGTCAGTA
* *
8021274 TCGCATTGCGATTTTCCCAATTCACGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCACGTTGCGATTCACGTAT
* * *
8021315 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCACGTTGCGATTCACGTAT
8021356 TCGCATTGCGA
1 TCGCATTGCGA
8021367 ATTGGGAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCACGTTGCGATTCACGTAT
Found at i:8021305 original size:21 final size:21
Alignment explanation
Indices: 8021274--8021349 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
8021264 ATAGTCAGTA
*
8021274 TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTCCCAAT
* * **
8021295 TCACGTTGCGA-TTTACTTAT
1 TCGCGTTGCGATTTTCCCAAT
*
8021315 TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTCCCAAT
8021336 TCGCGTTGCGATTT
1 TCGCGTTGCGATTT
8021350 ACTTATTCGC
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 15 0.35
21 28 0.65
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (21 bp):
TCGCGTTGCGATTTTCCCAAT
Found at i:8021323 original size:20 final size:20
Alignment explanation
Indices: 8021300--8021366 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
8021290 CCAATTCACG
8021300 TTGCGATTTACTTATTCGCA
1 TTGCGATTTACTTATTCGCA
* ** *
8021320 TTGCGATTTTCCCAATTCGCG
1 TTGCGA-TTTACTTATTCGCA
8021341 TTGCGATTTACTTATTCGCA
1 TTGCGATTTACTTATTCGCA
8021361 TTGCGA
1 TTGCGA
8021367 ATTGGGAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 22 0.58
21 16 0.42
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (20 bp):
TTGCGATTTACTTATTCGCA
Found at i:8022435 original size:2 final size:2
Alignment explanation
Indices: 8022428--8022454 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8022418 TCTAATAAAT
8022428 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8022455 TAAATTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8023183 original size:112 final size:112
Alignment explanation
Indices: 8023039--8023438 Score: 692
Period size: 112 Copynumber: 3.6 Consensus size: 112
8023029 TTGTCGGTAT
* * *
8023039 GTGTCGATACTTTATAGAAATATATTGATCCATAACAATATAACAAGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAACC
*
8023104 GGTCTGTAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
** * *
8023151 GTGTCGATACTTTATAAAAATGTATATATCCATGACAATATAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAACC
*
8023216 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
*
8023263 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAACT
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAACC
*
8023328 GATCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
*
8023375 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAAC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAAC
8023439 ATGTAAAGCG
Statistics
Matches: 272, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 272 1.00
ACGTcount: A:0.47, C:0.14, G:0.15, T:0.24
Consensus pattern (112 bp):
GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAAAATGACAAAACC
GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
Found at i:8023486 original size:204 final size:204
Alignment explanation
Indices: 8023223--8023593 Score: 625
Period size: 204 Copynumber: 1.8 Consensus size: 204
8023213 ACCGGTCTAT
*
8023223 AAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
1 AAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTATATAAAAATGTAT
* * *
8023288 CGATCCATAACAATATAACAAGTAAAAAAATGACAAAACTGATCTATAAATGACAAAACAGGTAA
66 CGATCCATAACAATAAAACAAGTAAAAAAATGACAAAACCGATATATAAATGACAAAACAGGTAA
8023353 AGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAA
131 AGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAA
8023418 CAGGTAAAA
196 CAGGTAAAA
* * * *
8023427 AAATGACAAAACATGTAAAGCGCTACCGGATATGTTGATAGTGTCGATACTATATAAAAATGTAT
1 AAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTATATAAAAATGTAT
* * *
8023492 CGATCCATAACAATAAAACAGGTAAACAAATGACAAAACCGGTATATAAATGACAAAACAGGTAA
66 CGATCCATAACAATAAAACAAGTAAAAAAATGACAAAACCGATATATAAATGACAAAACAGGTAA
* *
8023557 AGCGCTACCGGATATGTTGATAGTGTCGATACTTTAT
131 AGCGCTACCGGATATATTGAAAGTGTCGATACTTTAT
8023594 TATAAGTATC
Statistics
Matches: 154, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
204 154 1.00
ACGTcount: A:0.45, C:0.15, G:0.16, T:0.24
Consensus pattern (204 bp):
AAATGACAAAACAGGTAAAGCGCTACCGAATATATTGAAAGTGTCGATACTATATAAAAATGTAT
CGATCCATAACAATAAAACAAGTAAAAAAATGACAAAACCGATATATAAATGACAAAACAGGTAA
AGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAA
CAGGTAAAA
Found at i:8023492 original size:92 final size:92
Alignment explanation
Indices: 8023335--8023535 Score: 339
Period size: 92 Copynumber: 2.2 Consensus size: 92
8023325 ACTGATCTAT
*
8023335 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTATAAAAATGTAT
1 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTATATAAAAATGTAT
*
8023400 CGATCCATAACAATATAACAGGTAAAA
66 CGATCCATAACAATAAAACAGGTAAAA
* * *
8023427 AAATGACAAAACATGTAAAGCGCTACCGGATATGTTGATAGTGTCGATACTATATAAAAATGTAT
1 AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTATATAAAAATGTAT
*
8023492 CGATCCATAACAATAAAACAGGTAAAC
66 CGATCCATAACAATAAAACAGGTAAAA
*
8023519 AAATGACAAAACCGGTA
1 AAATGACAAAACAGGTA
8023536 TATAAATGAC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
92 101 1.00
ACGTcount: A:0.46, C:0.15, G:0.16, T:0.23
Consensus pattern (92 bp):
AAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTATATAAAAATGTAT
CGATCCATAACAATAAAACAGGTAAAA
Found at i:8023535 original size:20 final size:20
Alignment explanation
Indices: 8023506--8023557 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
8023496 CCATAACAAT
8023506 AAAACAGGTAAACAAATGAC
1 AAAACAGGTAAACAAATGAC
* * *
8023526 AAAACCGGTATATAAATGAC
1 AAAACAGGTAAACAAATGAC
8023546 AAAACAGGTAAA
1 AAAACAGGTAAA
8023558 GCGCTACCGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.15, T:0.13
Consensus pattern (20 bp):
AAAACAGGTAAACAAATGAC
Found at i:8023773 original size:182 final size:182
Alignment explanation
Indices: 8023466--8023845 Score: 618
Period size: 182 Copynumber: 2.1 Consensus size: 182
8023456 ATATGTTGAT
*
8023466 AGTGTCGATACTATATAAAAATGTATCGATCCATAACAATAAAACAGGTAAACAAATGACAAAAC
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGTAAACAAATGACAAAAC
* * * *
8023531 CGGTATATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATACTTTATTA
66 CGGTATAGAAATGACAAAACAGATAAAGAGCTACCAGATATGTTGATAGTGTCGATACTTTATTA
* * *
8023596 TAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCTAATAA
131 TAAGTATCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
* *
8023648 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAATAGGTAAA-AATATGACAAAA
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGTAAACAA-ATGACAAAA
* * * *
8023712 CCGGTCTCGAAATGACAAAACCGATAAAGAGCTACTAGATATGTTGATAGTGTCGATACTTTATT
65 CCGGTATAGAAATGACAAAACAGATAAAGAGCTACCAGATATGTTGATAGTGTCGATACTTTATT
8023777 ATAAGTATCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
130 ATAAGTATCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
8023830 AGTGTCGATACTTTAT
1 AGTGTCGATACTTTAT
8023846 TTCCATAGGA
Statistics
Matches: 183, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
181 2 0.01
182 181 0.99
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (182 bp):
AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGTAAACAAATGACAAAAC
CGGTATAGAAATGACAAAACAGATAAAGAGCTACCAGATATGTTGATAGTGTCGATACTTTATTA
TAAGTATCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
Found at i:8024355 original size:23 final size:23
Alignment explanation
Indices: 8024329--8024376 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
8024319 AAATATGTCA
* *
8024329 ATATAAACACTACCTATTATATT
1 ATATAAACACTACATAATATATT
* *
8024352 ATATAAGCGCTACATAATATATT
1 ATATAAACACTACATAATATATT
8024375 AT
1 AT
8024377 TGTACTTGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.38
Consensus pattern (23 bp):
ATATAAACACTACATAATATATT
Found at i:8027349 original size:195 final size:189
Alignment explanation
Indices: 8026984--8027365 Score: 452
Period size: 195 Copynumber: 2.0 Consensus size: 189
8026974 TAAAACACCG
* *
8026984 AATTTATATAAATTTACATATTCATCCCAATAGCAACTATCAAAACCAATCGCCGGTGACCCTAG
1 AATTTATATAAATTTACATATTCATCCCAATAACAACCATCAAAACCAATCGCCGGTGACCCTAG
* ** * * *
8027049 CCGAAAAATCATATTCTTCAACATTCACCACCATGAGAAAGCTATTACAAGAAAAATTTGGTATT
66 CCGAAAAATCATATTCCTCAACATAAACCACCATGAGAAAGCTATTACAAAAAAAAATTGATATT
**
8027114 TCTCTTCATCAAACATTGCCTAGCTCGTTGTTGCCCTATAATCGACCGTCGATTAGCTT
131 TCTCTTCATCAAACATTGCCTAGCTCGTTGTCACCCTATAATCGACCGTCGATTAGCTT
* *
8027173 AATTTATATAAATTTGA-ATATTCATCCC-ATCAACAACCATCAAAATCAATCGCTGGTGACCCT
1 AATTTATATAAATTT-ACATATTCATCCCAAT-AACAACCATCAAAACCAATCGCCGGTGACCC-
* *
8027236 ATTTATCGTCC-AAAAATCATATTCCTCAACATAAACCACCTTGAGAGAGCTA-T-CAAAAAAGA
63 ---TA--G-CCGAAAAATCATATTCCTCAACATAAACCACCATGAGAAAGCTATTACAAAAAA-A
* * * *
8027298 AGATTGATATTTCTTTTCATTAAACATTG-CTCAGCTCGTTGTCATCCTATAATCGACTGTCGAT
121 A-ATTGATATTTCTCTTCATCAAACATTGCCT-AGCTCGTTGTCACCCTATAATCGACCGTCGAT
8027362 TAGC
184 TAGC
8027366 CCTACCGTTG
Statistics
Matches: 163, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
188 2 0.01
189 53 0.33
190 1 0.01
193 8 0.05
194 5 0.03
195 92 0.56
196 2 0.01
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (189 bp):
AATTTATATAAATTTACATATTCATCCCAATAACAACCATCAAAACCAATCGCCGGTGACCCTAG
CCGAAAAATCATATTCCTCAACATAAACCACCATGAGAAAGCTATTACAAAAAAAAATTGATATT
TCTCTTCATCAAACATTGCCTAGCTCGTTGTCACCCTATAATCGACCGTCGATTAGCTT
Found at i:8030581 original size:23 final size:23
Alignment explanation
Indices: 8030529--8030589 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
8030519 GACAATCTTA
* *
8030529 TGGCACTACGGTGTAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* *
8030552 CGACACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
*
8030575 TGGCACTTTGGTGCA
1 TGGCACTTCGGTGCA
8030590 TTTATACGAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.30
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:8033791 original size:20 final size:20
Alignment explanation
Indices: 8033763--8033811 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
8033753 AAGGAGGTAG
* *
8033763 TATCAATACTGACACATCAA
1 TATCGATACTGACACAGCAA
* *
8033783 TATCGATACTGACTCAGGAA
1 TATCGATACTGACACAGCAA
8033803 TATCGATAC
1 TATCGATAC
8033812 CCCTACTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (20 bp):
TATCGATACTGACACAGCAA
Found at i:8035233 original size:24 final size:24
Alignment explanation
Indices: 8035201--8035247 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8035191 ACTTAAATTC
8035201 TTAACTTTTATATATTAACTTAAT
1 TTAACTTTTATATATTAACTTAAT
* * * *
8035225 TTAATTTTTTTATTTTAATTTAA
1 TTAACTTTTATATATTAACTTAA
8035248 AAATATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (24 bp):
TTAACTTTTATATATTAACTTAAT
Found at i:8035422 original size:29 final size:31
Alignment explanation
Indices: 8035365--8035422 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
8035355 TATTAATTAA
* *
8035365 ATATATTTTTAAAAGTTTAGATAAGAATAAT
1 ATATATTTTTAAAAGTTAAAATAAGAATAAT
*
8035396 ATATATTTTTTAAA-TTAAAATAA-AATA
1 ATATATTTTTAAAAGTTAAAATAAGAATA
8035423 TTTTTAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.17
30 7 0.29
31 13 0.54
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (31 bp):
ATATATTTTTAAAAGTTAAAATAAGAATAAT
Found at i:8035443 original size:21 final size:23
Alignment explanation
Indices: 8035390--8035443 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 23
8035380 TTTAGATAAG
8035390 AATAATATATATTTTTTAAATTAA
1 AATAATA-ATATTTTTTAAATTAA
8035414 AATAA-AATA-TTTTT-AATTAA
1 AATAATAATATTTTTTAAATTAA
*
8035434 ATTAATAATA
1 AATAATAATA
8035444 AAATATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 10 0.36
21 9 0.32
22 3 0.11
23 1 0.04
24 5 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
AATAATAATATTTTTTAAATTAA
Found at i:8035443 original size:26 final size:26
Alignment explanation
Indices: 8035405--8035478 Score: 100
Period size: 25 Copynumber: 2.9 Consensus size: 26
8035395 TATATATTTT
8035405 TTAAATTAA-AATAAAATATTTTTAA
1 TTAAATTAATAATAAAATATTTTTAA
*
8035430 TTAAATTAATAATAAAATATATTTAA
1 TTAAATTAATAATAAAATATTTTTAA
*
8035456 -TAAGTTAAT-ATAGAAATATTTTT
1 TTAAATTAATAATA-AAATATTTTT
8035479 TTAGAGTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
24 3 0.07
25 26 0.59
26 15 0.34
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (26 bp):
TTAAATTAATAATAAAATATTTTTAA
Found at i:8035983 original size:20 final size:21
Alignment explanation
Indices: 8035921--8035993 Score: 112
Period size: 21 Copynumber: 3.5 Consensus size: 21
8035911 TTCATAATTT
8035921 GCAATGCGAATTAGGAAAATC
1 GCAATGCGAATTAGGAAAATC
*
8035942 GTAATGCGAATTAGGAAAATC
1 GCAATGCGAATTAGGAAAATC
* *
8035963 GCAATGCGAA-TACGTAAATC
1 GCAATGCGAATTAGGAAAATC
8035983 GCAATGCGAAT
1 GCAATGCGAAT
8035994 CTGACTATCG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
20 18 0.38
21 29 0.62
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (21 bp):
GCAATGCGAATTAGGAAAATC
Found at i:8036486 original size:20 final size:20
Alignment explanation
Indices: 8036436--8036488 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
8036426 TCGTGTTGCG
*
8036436 ATTCTCTCGTTGCGATAGTC
1 ATTCTCTCGTTGCAATAGTC
* **
8036456 ATT-TCCGCGTTGCAATTTTC
1 ATTCT-CTCGTTGCAATAGTC
8036476 ATTCTCTCGTTGC
1 ATTCTCTCGTTGC
8036489 GGTTTCATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.43
Consensus pattern (20 bp):
ATTCTCTCGTTGCAATAGTC
Found at i:8038358 original size:94 final size:93
Alignment explanation
Indices: 8038168--8038543 Score: 627
Period size: 94 Copynumber: 4.1 Consensus size: 93
8038158 TAGATTGCTT
*
8038168 AGTAAATTTATTCGGTTGCTGCCAATAT-TGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAG
1 AGTAAATTTATTCGGTTGCTGCCAAT-TCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAG
8038228 TATTTGTCTTTTGTTTTGTCTTTTGGTTGA
65 TATTTGTC-TTTGTTTTGTCTTTTGGTTGA
8038258 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
8038323 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
*
8038352 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
8038417 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
* * * *
8038446 AGTAAATTTGTTCGTTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
8038511 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
8038539 AGTAA
1 AGTAA
8038544 TGCAATCAAT
Statistics
Matches: 275, Mismatches: 5, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
89 1 0.00
90 34 0.12
92 3 0.01
93 28 0.10
94 209 0.76
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.47
Consensus pattern (93 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGA
Found at i:8038709 original size:18 final size:18
Alignment explanation
Indices: 8038683--8038717 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8038673 GAAACTATAA
*
8038683 TCGCGTTGCGATTTTGTT
1 TCGCATTGCGATTTTGTT
8038701 TCGCATTGCGATTTTGT
1 TCGCATTGCGATTTTGT
8038718 CGTTGCTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.49
Consensus pattern (18 bp):
TCGCATTGCGATTTTGTT
Found at i:8038754 original size:19 final size:20
Alignment explanation
Indices: 8038730--8038781 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 20
8038720 TTGCTTCTCT
*
8038730 CGTTGCGATTTTCA-TTTCG
1 CGTTGCGATTTTCATTTTCA
**
8038749 CGTTGCGATAGTCATTTTTCA
1 CGTTGCGATTTTCA-TTTTCA
8038770 CGTTGCGATTTT
1 CGTTGCGATTTT
8038782 AAGTTCCAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 12 0.46
21 14 0.54
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.46
Consensus pattern (20 bp):
CGTTGCGATTTTCATTTTCA
Found at i:8039236 original size:42 final size:42
Alignment explanation
Indices: 8039175--8039258 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
8039165 GCCCGACTCG
* * * *
8039175 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATAATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
8039217 CCTATAATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATAATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
8039259 ACTGTCATCG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.23
Consensus pattern (42 bp):
CCTATAATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:8040842 original size:33 final size:33
Alignment explanation
Indices: 8040795--8040871 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
8040785 AAATACTATT
* * *
8040795 GCAATGCGAAATGAAAATCGCAACGAGAGAATC
1 GCAACGCGAAATGAAAATCGCAACGACAAAATC
8040828 GCAACGCGAAATGAAAATCGCAACGACAAAATC
1 GCAACGCGAAATGAAAATCGCAACGACAAAATC
8040861 GCAACGCGAAA
1 GCAACGCGAAA
8040872 CTAAATTCGC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.47, C:0.22, G:0.22, T:0.09
Consensus pattern (33 bp):
GCAACGCGAAATGAAAATCGCAACGACAAAATC
Found at i:8040848 original size:19 final size:19
Alignment explanation
Indices: 8040795--8040852 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
8040785 AAATACTATT
*
8040795 GCAATGCGAAATGAAAATC
1 GCAACGCGAAATGAAAATC
*
8040814 GCAA--CG--A-GAGAATC
1 GCAACGCGAAATGAAAATC
8040828 GCAACGCGAAATGAAAATC
1 GCAACGCGAAATGAAAATC
8040847 GCAACG
1 GCAACG
8040853 ACAAAATCGC
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
14 10 0.31
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 16 0.50
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (19 bp):
GCAACGCGAAATGAAAATC
Found at i:8040934 original size:20 final size:20
Alignment explanation
Indices: 8040909--8040949 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8040899 GCGATTTTCA
*
8040909 TTTCGCATTGCGATAGTCAT
1 TTTCGCATTGCGATAGACAT
*
8040929 TTTCGCGTTGCGATAGACAT
1 TTTCGCATTGCGATAGACAT
8040949 T
1 T
8040950 AAGATGATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (20 bp):
TTTCGCATTGCGATAGACAT
Found at i:8040988 original size:20 final size:19
Alignment explanation
Indices: 8040916--8040988 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 19
8040906 TCATTTCGCA
*
8040916 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTT-GTG
* **
8040936 TTGCGATAGACATTAAGATG
1 TTGCGATAGTCATTTTG-TG
8040956 ATTGCGA-ACGTCATTTCTGTG
1 -TTGCGATA-GTCATTT-TGTG
8040977 TTGCGATAGTCA
1 TTGCGATAGTCA
8040989 AATGATTGCC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
19 1 0.02
20 25 0.61
21 14 0.34
22 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (19 bp):
TTGCGATAGTCATTTTGTG
Found at i:8043507 original size:24 final size:24
Alignment explanation
Indices: 8043456--8043507 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
8043446 ATCCAAGTAT
** *
8043456 TGACCAAGATCAAAGTCCGGGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
8043480 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
8043504 TGAC
1 TGAC
8043508 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:8044411 original size:21 final size:21
Alignment explanation
Indices: 8044367--8044520 Score: 163
Period size: 21 Copynumber: 7.5 Consensus size: 21
8044357 ACGATTTACT
* *
8044367 AAATCGCAATGCG-ATTACGT
1 AAATCGCAATGCGAATTAGGA
8044387 AAATCG-AAGTGCGAATTAGGA
1 AAATCGCAA-TGCGAATTAGGA
* *
8044408 AAATCGCAATGCG-ATTACGT
1 AAATCGCAATGCGAATTAGGA
**
8044428 AAATCATAATGCGAATTAGGA
1 AAATCGCAATGCGAATTAGGA
* * *
8044449 AAATCGCAATGCG-GTTACGT
1 AAATCGCAATGCGAATTAGGA
8044469 AAATCGCAATGCGAATTAGGA
1 AAATCGCAATGCGAATTAGGA
* * *
8044490 AAATCGCAACGCGAATTTGGG
1 AAATCGCAATGCGAATTAGGA
8044511 AAATCGCAAT
1 AAATCGCAAT
8044521 ACGATAGTCA
Statistics
Matches: 109, Mismatches: 20, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
19 2 0.02
20 43 0.39
21 62 0.57
22 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (21 bp):
AAATCGCAATGCGAATTAGGA
Found at i:8044424 original size:41 final size:40
Alignment explanation
Indices: 8044367--8044503 Score: 220
Period size: 41 Copynumber: 3.4 Consensus size: 40
8044357 ACGATTTACT
8044367 AAATCGCAATGCGATTACGTAAATCGAAGTGCGAATTAGGA
1 AAATCGCAATGCGATTACGTAAATCGAA-TGCGAATTAGGA
*
8044408 AAATCGCAATGCGATTACGTAAATCATAATGCGAATTAGGA
1 AAATCGCAATGCGATTACGTAAATC-GAATGCGAATTAGGA
*
8044449 AAATCGCAATGCGGTTACGTAAATCGCAATGCGAATTAGGA
1 AAATCGCAATGCGATTACGTAAATCG-AATGCGAATTAGGA
*
8044490 AAATCGCAACGCGA
1 AAATCGCAATGCGA
8044504 ATTTGGGAAA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
41 87 0.98
42 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (40 bp):
AAATCGCAATGCGATTACGTAAATCGAATGCGAATTAGGA
Found at i:8044537 original size:62 final size:62
Alignment explanation
Indices: 8044408--8044523 Score: 144
Period size: 62 Copynumber: 1.9 Consensus size: 62
8044398 CGAATTAGGA
* * * * *
8044408 AAATCGCAATGCG-ATTACGTAAATCATAATGCGAATTAGGAAAATCGCAATGCGGTTACGT
1 AAATCGCAATGCGAATTACGAAAATCACAACGCGAATTAGGAAAATCGCAATACGGATACGT
* * * *
8044469 AAATCGCAATGCGAATTAGGAAAATCGCAACGCGAATTTGGGAAATCGCAATACG
1 AAATCGCAATGCGAATTACGAAAATCACAACGCGAATTAGGAAAATCGCAATACG
8044524 ATAGTCAGAA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
61 13 0.28
62 33 0.72
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (62 bp):
AAATCGCAATGCGAATTACGAAAATCACAACGCGAATTAGGAAAATCGCAATACGGATACGT
Found at i:8044537 original size:82 final size:82
Alignment explanation
Indices: 8044367--8044524 Score: 210
Period size: 82 Copynumber: 1.9 Consensus size: 82
8044357 ACGATTTACT
* *
8044367 AAATCGCAATGCGATTACGTAAATCGAAGTGCGAATTAGGAAAATCGCAATGCGATTACGTAAAT
1 AAATCGCAATGCGATTACGTAAATCGAAGTGCGAATTAGGAAAATCGCAACGCGATTACGGAAAT
* * *
8044432 CATAATGCGAATTAGGA
66 CACAATACGAATTAGCA
* **
8044449 AAATCGCAATGCGGTTACGTAAATCGCAA-TGCGAATTAGGAAAATCGCAACGCGAATTTGGGAA
1 AAATCGCAATGCGATTACGTAAATCG-AAGTGCGAATTAGGAAAATCGCAACGCG-ATTACGGAA
*
8044513 ATCGCAATACGA
64 ATCACAATACGA
8044525 TAGTCAGAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
82 49 0.74
83 17 0.26
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (82 bp):
AAATCGCAATGCGATTACGTAAATCGAAGTGCGAATTAGGAAAATCGCAACGCGATTACGGAAAT
CACAATACGAATTAGCA
Found at i:8055767 original size:11 final size:10
Alignment explanation
Indices: 8055740--8055766 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8055730 CATTTATTAT
8055740 TTAAAAATAA
1 TTAAAAATAA
8055750 TTAAAAATAA
1 TTAAAAATAA
8055760 TTAAAAA
1 TTAAAAA
8055767 AAGAATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TTAAAAATAA
Found at i:8058017 original size:2 final size:2
Alignment explanation
Indices: 8058010--8058040 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8058000 CATAAGAAAC
8058010 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8058041 CGTTCGCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8059249 original size:26 final size:27
Alignment explanation
Indices: 8059196--8059250 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
8059186 TTTTTTGAAA
* *
8059196 ATAAAAAAATAAAATACAAATACAAAT
1 ATAAAAAAATAAAAGACAAATAAAAAT
8059223 ATAAAAAAA-AAAAGAC-AATAAATAAT
1 ATAAAAAAATAAAAGACAAATAAA-AAT
8059249 AT
1 AT
8059251 CGACGATCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.20
26 11 0.44
27 9 0.36
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (27 bp):
ATAAAAAAATAAAAGACAAATAAAAAT
Found at i:8059728 original size:25 final size:25
Alignment explanation
Indices: 8059673--8059729 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
8059663 TAGATTTTTG
* *
8059673 AAAATAAAAAAATAAAATACAAATA
1 AAAATATAAAAATAAAAGACAAATA
*
8059698 CAAATATAAAAATAAAAGAC-AATA
1 AAAATATAAAAATAAAAGACAAATA
8059722 AATAATAT
1 AA-AATAT
8059730 CGACGATCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (25 bp):
AAAATATAAAAATAAAAGACAAATA
Found at i:8063568 original size:2 final size:2
Alignment explanation
Indices: 8063561--8063605 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
8063551 GTTCATTTGC
* * *
8063561 AG AG AG AG AG AG AG AG AG GG AG AG GG AG GG AG AG AG AG AG A-
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8063602 AG AG
1 AG AG
8063606 GTTCTTGACC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8073785 original size:2 final size:2
Alignment explanation
Indices: 8073778--8073806 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8073768 TCCTACATTC
8073778 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8073807 CACACACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8075789 original size:8 final size:7
Alignment explanation
Indices: 8075763--8075826 Score: 57
Period size: 6 Copynumber: 9.3 Consensus size: 7
8075753 TTGACCGAGT
8075763 TTTA-TA
1 TTTATTA
8075769 TTTA-TA
1 TTTATTA
8075775 TTT-TTA
1 TTTATTA
8075781 TTGTATTA
1 TT-TATTA
8075789 TTTATTTA
1 TTTA-TTA
8075797 TTTATTTA
1 TTTA-TTA
8075805 TTTAATTA
1 TTT-ATTA
8075813 -TTATTA
1 TTTATTA
8075819 -TTATTA
1 TTTATTA
8075825 TT
1 TT
8075827 ATTTCTTTTA
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
6 23 0.44
7 6 0.12
8 22 0.42
9 1 0.02
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (7 bp):
TTTATTA
Found at i:8075795 original size:4 final size:4
Alignment explanation
Indices: 8075767--8075814 Score: 55
Period size: 4 Copynumber: 12.0 Consensus size: 4
8075757 CCGAGTTTTA
*
8075767 TATT TATAT T-TT TATT GTA-T TATT TATT TATT TATT TATT TAAT TATT
1 TATT TAT-T TATT TATT -TATT TATT TATT TATT TATT TATT TATT TATT
8075815 ATTATTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 4 0.11
4 30 0.79
5 4 0.11
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (4 bp):
TATT
Found at i:8077361 original size:10 final size:10
Alignment explanation
Indices: 8077346--8077371 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8077336 TTTCATTTAG
8077346 TTTATTACTT
1 TTTATTACTT
8077356 TTTATTACTT
1 TTTATTACTT
8077366 TTTATT
1 TTTATT
8077372 TCATTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTATTACTT
Found at i:8081181 original size:106 final size:106
Alignment explanation
Indices: 8081015--8082285 Score: 2204
Period size: 106 Copynumber: 12.0 Consensus size: 106
8081005 ATTTTGCCCG
*
8081015 AGAGCCAATTTCAA-TTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
8081079 CGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
* * *
8081120 AGAGCCAATTTCAACTTCACAGCGAAGTATATTGGACTCAAGACAACGCAAGTTCAACTTCACAA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
8081185 CGAAGGGACCGCTGGTTGTCAAAAAACAACTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
*
8081226 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
8081291 CGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
8081332 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
8081397 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
* *
8081438 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
8081503 CGAAGGGACCGCTGGTTGTCAAAAAATAACTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
* *
8081544 AGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* * *
8081609 CGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCGATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
*
8081650 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
8081715 CGAAGGGACCGCTGGTTGTCAA-AAATAACTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
8081755 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
8081820 CGAAGGGACCGCTGGTTGTCAAAAAATAACTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
8081861 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
8081926 CGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCGATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
8081967 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* * *
8082032 TGAAGGGACCGCTGGTTGTCAACAAATAACTTCTCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
* *
8082073 AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCATGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
8082138 CGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
* *
8082179 AGAGCCAATTTCAACTTCACAGCGAATGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
8082244 CGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAACTTC
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
8082285 A
1 A
8082286 CAGCGAAGGA
Statistics
Matches: 1108, Mismatches: 56, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
105 115 0.10
106 993 0.90
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (106 bp):
AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTC
Found at i:8081613 original size:318 final size:318
Alignment explanation
Indices: 8081015--8082713 Score: 2560
Period size: 318 Copynumber: 5.5 Consensus size: 318
8081005 ATTTTGCCCG
*
8081015 AGAGCCAATTTCAA-TTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* * *
8081079 CGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACG
* *
8081144 AAGTATATTGGACTCAAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAAA
131 AAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAAA
* *
8081209 AACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCTAGACAACG
196 AATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACG
8081274 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
261 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
8081332 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
*
8081397 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACG
8081462 AAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAAA
131 AAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAAA
* *
8081527 AATAACTTCCCAATTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAATG
196 AATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACG
* *
8081592 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCGATTTC
261 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
*
8081650 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
8081715 CGAAGGGACCGCTGGTTGTCAA-AAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACG
*
8081779 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAAA
131 AAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAAA
8081844 AATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACG
196 AATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACG
*
8081909 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCGATTTC
261 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
8081967 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* * *
8082032 TGAAGGGACCGCTGGTTGTCAACAAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACG
* * *
8082097 AAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATA
131 AAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAAA
* * * *
8082162 AACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAATGATATTGGACTCAAGACAACG
196 AATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACG
*
8082227 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA-----C---TT-
261 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
* *
8082276 ----CC-----CAACTTCACAGCGAAGGATATTGAACTCAAGACAACGCAAGTTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* *
8082332 CGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCA-A--C---TT---C-T--CAGCG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACG
* * * * * *
8082385 AAGGATCTTGGAC-CTAAGACAACACAAGCTCAACTTCACGACGAAGGGGCGGCTGATTGTCAAT
131 AAGGATATTGGACTC-AAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAA-
* * * *
8082449 AAAAT---TT--C-A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTAGACTCGAGACAG
194 AAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAA
* * * *
8082507 CACAAGTTCAACTTCACAAACGAAGGGACGGCTGGTTGTCAACAAACAACTTCCCAATTTC
259 CGCAAGTTCAACTTCAC-GACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
* * * *
8082568 AGAGCCAATTTCAACTTCACGGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAA
1 AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
* * * ** * *
8082633 TGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCCAATTTCAACTTCACGACG
66 CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACG
*
8082698 GAGGATATTGGACTCA
131 AAGGATATTGGACTCA
8082714 GAACAATGCT
Statistics
Matches: 1272, Mismatches: 74, Indels: 76
0.89 0.05 0.05
Matches are distributed among these distances:
282 60 0.05
283 29 0.02
284 1 0.00
286 2 0.00
287 1 0.00
288 58 0.05
289 3 0.00
290 1 0.00
291 3 0.00
294 2 0.00
296 2 0.00
297 1 0.00
299 1 0.00
300 90 0.07
301 84 0.07
302 1 0.00
304 1 0.00
305 2 0.00
307 2 0.00
310 3 0.00
311 1 0.00
313 16 0.01
314 1 0.00
317 322 0.25
318 585 0.46
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (318 bp):
AGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGA
CGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACG
AAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAAA
AATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACG
CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTC
Found at i:8082336 original size:43 final size:43
Alignment explanation
Indices: 8082188--8082337 Score: 112
Period size: 43 Copynumber: 3.4 Consensus size: 43
8082178 CAGAGCCAAT
* *
8082188 TTCAACTTCACAGCGAATGATATTGGACTCAAGACAACGCAAG
1 TTCAACTTCACAGCGAAGGATATTGAACTCAAGACAACGCAAG
** * *** * *
8082231 TTCAACTTCAC-GACGAAGGGACCGCTGGTTGTCAATA-AA--CAAC
1 TTCAACTTCACAG-CGAA-GGA--TATTGAACTCAAGACAACGCAAG
8082274 TTCCCAACTTCACAGCGAAGGATATTGAACTCAAGACAACGCAAG
1 TT--CAACTTCACAGCGAAGGATATTGAACTCAAGACAACGCAAG
8082319 TTCAACTTCAC-GACGAAGG
1 TTCAACTTCACAG-CGAAGG
8082338 GACCGCTGGT
Statistics
Matches: 79, Mismatches: 17, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
42 9 0.11
43 37 0.47
44 5 0.06
45 20 0.25
46 8 0.10
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.20
Consensus pattern (43 bp):
TTCAACTTCACAGCGAAGGATATTGAACTCAAGACAACGCAAG
Found at i:8082339 original size:88 final size:89
Alignment explanation
Indices: 8082189--8082568 Score: 383
Period size: 88 Copynumber: 4.1 Consensus size: 89
8082179 AGAGCCAATT
* * *
8082189 TCAACTTCACAGCGAATGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
1 TCAACTTCACAGCGAAGGATATTGAACTCAAGACAACACAAGTTCAACTTCACGACGAAGGGACC
8082254 GCTGGTTGTCAATAAACAACTTCC
66 GCTGGTTGTCAATAAACAACTTCC
*
8082278 -CAACTTCACAGCGAAGGATATTGAACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
1 TCAACTTCACAGCGAAGGATATTGAACTCAAGACAACACAAGTTCAACTTCACGACGAAGGGACC
8082342 GCTGGTTGTCAATAAACAACTTCCC
66 GCTGGTTGTCAATAAACAACTT-CC
* * * *
8082367 AATTTCAACTTCTCAGCGAAGGATCTTGGAC-CTAAGACAACACAAGCTCAACTTCACGACGAAG
1 ----TCAACTTCACAGCGAAGGATATTGAACTC-AAGACAACACAAGTTCAACTTCACGACGAAG
* * * *
8082431 GGGCGGCTGATTGTCAATAAA-ATTTCATTCAGAGTC
61 GGACCGCTGGTTGTCAATAAACA--AC-TTC-----C
* * *
8082467 AATTTCAACTTCACAGCGAAGGATATT-AGACTCGAGACAGCACAAGTTCAACTTCACAAACGAA
1 ----TCAACTTCACAGCGAAGGATATTGA-ACTCAAGACAACACAAGTTCAACTTCAC-GACGAA
* *
8082531 GGGACGGCTGGTTGTCAACAAACAACTTCC
60 GGGACCGCTGGTTGTCAATAAACAACTTCC
*
8082561 -CAATTTCA
1 TCAACTTCA
8082569 GAGCCAATTT
Statistics
Matches: 249, Mismatches: 23, Indels: 38
0.80 0.07 0.12
Matches are distributed among these distances:
88 84 0.34
89 9 0.04
93 2 0.01
94 71 0.29
95 2 0.01
96 2 0.01
99 3 0.01
100 50 0.20
101 25 0.10
102 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (89 bp):
TCAACTTCACAGCGAAGGATATTGAACTCAAGACAACACAAGTTCAACTTCACGACGAAGGGACC
GCTGGTTGTCAATAAACAACTTCC
Found at i:8082445 original size:94 final size:94
Alignment explanation
Indices: 8082077--8082667 Score: 577
Period size: 106 Copynumber: 6.0 Consensus size: 94
8082067 AATTTCAGAG
* * * *
8082077 CCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCATGACGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACGACGAA
8082142 GGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTC
66 GGGACCGCTGGTTGTCAATAAACAA-----C---TTC
* *
8082179 AGAGCCAATTTCAACTTCACAGCGAATGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGA
1 ----CCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACGA
8082244 CGAAGGGACCGCTGGTTGTCAATAAACAACTT-
62 CGAAGGGACCGCTGGTTGTCAATAAACAACTTC
* *
8082276 CC-----CAACTTCACAGCGAAGGATATTGAACTCAAGACAACGCAAGTTCAACTTCACGACGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACGACGAA
8082336 GGGACCGCTGGTTGTCAATAAACAACTTC
66 GGGACCGCTGGTTGTCAATAAACAACTTC
* * *
8082365 CCAATTTCAACTTCTCAGCGAAGGATCTTGGAC-CTAAGACAACACAAGCTCAACTTCACGACGA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTC-AAGACAACACAAGTTCAACTTCACGACGA
* * * *
8082429 AGGGGCGGCTGATTGTCAATAAA-ATTTCATTC
65 AGGGACCGCTGGTTGTCAATAAACA--AC-TTC
* * * * *
8082461 AGAGTCAATTTCAACTTCACAGCGAAGGATATTAGACTCGAGACAGCACAAGTTCAACTTCACAA
1 ----CCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCAC-G
* *
8082526 ACGAAGGGACGGCTGGTTGTCAACAAACAACTTC
61 ACGAAGGGACCGCTGGTTGTCAATAAACAACTTC
*
8082560 CCAATTTCAGAGCCAATTTCAACTTCACGGCGAAGGATATTGGACTCGAGACAACACAAGTTCAA
1 CCAATTTCA-A--C---TTC-A---CA--GCGAAGGATATTGGACTCAAGACAACACAAGTTCAA
* * * * *
8082625 CTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTC
54 CTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTC
8082666 CC
1 CC
8082668 GGTTCCAGAG
Statistics
Matches: 424, Mismatches: 32, Indels: 58
0.82 0.06 0.11
Matches are distributed among these distances:
88 84 0.20
89 2 0.00
93 4 0.01
94 70 0.17
95 9 0.02
96 4 0.01
98 3 0.01
99 3 0.01
100 51 0.12
101 29 0.07
102 2 0.00
105 2 0.00
106 121 0.29
107 40 0.09
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (94 bp):
CCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACGACGAA
GGGACCGCTGGTTGTCAATAAACAACTTC
Found at i:8082694 original size:106 final size:104
Alignment explanation
Indices: 8082365--8082712 Score: 447
Period size: 106 Copynumber: 3.3 Consensus size: 104
8082355 AAACAACTTC
* * * * *
8082365 CCAATTTCAACTTCTCAGCGAAGGATCTTGGAC-CTAAGACAACACAAGCTCAACTTCACGACGA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTC-GAGACAACACAAGTTCAACTTCACAACGA
* * *
8082429 AGGGGCGGCTGATTGTCAA-TAA-AATTT--CATTCAGAG
65 AGGGACGGCTGGTTGTCAACAAACAATTTCCCATTCAGAG
* * *
8082465 TCAATTTCAACTTCACAGCGAAGGATATTAGACTCGAGACAGCACAAGTTCAACTTCACAAACGA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCAC-AACGA
*
8082530 AGGGACGGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAG
65 AGGGACGGCTGGTTGTCAACAAACAATTTCCC-A-TTCAGAG
* *
8082572 CCAATTTCAACTTCACGGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAATGAA
1 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAA
*
8082637 GGGACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAGAG
66 GGGACGGCTGGTTGTCAACAAACAATTTCCC-ATT-CAGAG
*
8082678 CCAATTTCAACTTCAC-GACGGAGGATATTGGACTC
1 CCAATTTCAACTTCACAG-CGAAGGATATTGGACTC
8082713 AGAACAATGC
Statistics
Matches: 217, Mismatches: 21, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
100 50 0.23
101 22 0.10
102 2 0.01
103 4 0.02
105 4 0.02
106 73 0.34
107 62 0.29
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (104 bp):
CCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAA
GGGACGGCTGGTTGTCAACAAACAATTTCCCATTCAGAG
Found at i:8095364 original size:30 final size:30
Alignment explanation
Indices: 8095328--8095391 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
8095318 CTGATTAGAC
*
8095328 TAAGAGTTAAAGTAAATCATAATTGAAAAT
1 TAAGAGTCAAAGTAAATCATAATTGAAAAT
8095358 TAAGAGTCAAAGTAAATCATAATTGAAAAT
1 TAAGAGTCAAAGTAAATCATAATTGAAAAT
8095388 TAAG
1 TAAG
8095392 GCATAAACCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.28
Consensus pattern (30 bp):
TAAGAGTCAAAGTAAATCATAATTGAAAAT
Done.