Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007924.1 Hibiscus syriacus cultivar Beakdansim tig00110330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1741266
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 3 of 7
Found at i:429263 original size:31 final size:30
Alignment explanation
Indices: 429185--429274 Score: 103
Period size: 31 Copynumber: 3.0 Consensus size: 30
429175 AGGATATTAT
*
429185 TTTATTGAGTCTCTTGACTATTAAAAGTTA
1 TTTATTGAGTCCCTTGACTATTAAAAGTTA
** * *
429215 TAAAATGA-TCCATTGACTA-TAAAGAGTTGA
1 TTTATTGAGTCCCTTGACTATTAAA-AGTT-A
429245 TTTATTGAGTCCCTTGACTATTAAAAGTTA
1 TTTATTGAGTCCCTTGACTATTAAAAGTTA
429275 CAACATGATC
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
28 4 0.09
29 13 0.28
30 12 0.26
31 14 0.30
32 4 0.09
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (30 bp):
TTTATTGAGTCCCTTGACTATTAAAAGTTA
Found at i:437270 original size:12 final size:12
Alignment explanation
Indices: 437253--437303 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
437243 GGGTTACAGG
437253 TTTTATATTTAA
1 TTTTATATTTAA
437265 TTTTATA-TTATA
1 TTTTATATTTA-A
*
437277 TTTGAT-TTTAA
1 TTTTATATTTAA
437288 TTTTA-ATATTAA
1 TTTTATAT-TTAA
437300 TTTT
1 TTTT
437304 TAAATAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
11 9 0.27
12 24 0.73
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTATATTTAA
Found at i:437347 original size:27 final size:25
Alignment explanation
Indices: 437292--437359 Score: 79
Period size: 23 Copynumber: 2.8 Consensus size: 25
437282 TTTTAATTTT
437292 AATATTAATTTTTAA-A-TAAATTA
1 AATATTAATTTTTAATATTAAATTA
*
437315 AATATTAATTTTTAATATTATATTA
1 AATATTAATTTTTAATATTAAATTA
*
437340 TAGATATTGA-TTTTAATATT
1 -A-ATATTAATTTTTAATATT
437360 GATTTTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
23 15 0.38
24 1 0.03
25 6 0.15
26 11 0.28
27 6 0.15
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (25 bp):
AATATTAATTTTTAATATTAAATTA
Found at i:437360 original size:12 final size:12
Alignment explanation
Indices: 437324--437365 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
437314 AAATATTAAT
437324 TTTTAATATT-A
1 TTTTAATATTGA
437335 TATTATAGATATTGA
1 T-TT-TA-ATATTGA
437350 TTTTAATATTGA
1 TTTTAATATTGA
437362 TTTT
1 TTTT
437366 TTAAATAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
11 1 0.04
12 13 0.48
13 4 0.15
14 7 0.26
15 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (12 bp):
TTTTAATATTGA
Found at i:437394 original size:65 final size:63
Alignment explanation
Indices: 437264--437420 Score: 232
Period size: 63 Copynumber: 2.5 Consensus size: 63
437254 TTTATATTTA
*
437264 ATTTT-ATATTATATT-T-GATTTTAATTTTAATATTAATTTTTAAATAAATTAAATATTAAT
1 ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTAAATAAATTAAATATTAAT
* *
437324 -TTTTAATATTATATTATAGATATTGATTTTAATATTGATTTTTTAAATAAATTAAATATTAATT
1 ATTTTAATATTATATTATAGATATTAATTTTAATATT-AATTTTTAAATAAATTAAATATTAA-T
437388 ATTTTAATATTATATTATAGATATTTAATTTTA
1 ATTTTAATATTATATTATAGATA-TTAATTTTA
437421 TATCATATAA
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
59 4 0.05
60 10 0.12
61 1 0.01
62 16 0.19
63 24 0.28
64 1 0.01
65 22 0.26
66 8 0.09
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (63 bp):
ATTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTAAATAAATTAAATATTAAT
Found at i:437470 original size:17 final size:17
Alignment explanation
Indices: 437414--437464 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
437404 ATAGATATTT
437414 AATTTTATATCATA-TAA
1 AATTTTATAT-ATATTAA
437431 ATTATTTTATATATATTAA
1 A--ATTTTATATATATTAA
*
437450 AATTTTATATTTATT
1 AATTTTATATATATT
437465 TTAATTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
17 14 0.47
18 3 0.10
19 13 0.43
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTTTATATATATTAA
Found at i:438738 original size:5 final size:5
Alignment explanation
Indices: 438722--439076 Score: 513
Period size: 5 Copynumber: 71.6 Consensus size: 5
438712 TGTAATCCTT
438722 TATAA TAT-A TATAA TATAA TATAA TATAA -ATAA TATAA TA-ATA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA-A TATAA
438770 TATAA TATAA TAT-A TATAATA TATAA TATAA -ATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TAT-A-A TATAA TATAA TATAA TATAA TATAA TATAA
438820 TA-AA TATAA TAT-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
438868 TATAA TATAA TATAA TATAA TATAATA TATAA TATAATA TATAA TATAA
1 TATAA TATAA TATAA TATAA TAT-A-A TATAA TAT-A-A TATAA TATAA
438917 TATAA TAT-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
438966 TATAA TATAA TATAA TATAA TATAAA TATAA TATAA T-TAA TATAA TATATA
1 TATAA TATAA TATAA TATAA TAT-AA TATAA TATAA TATAA TATAA TATA-A
439017 TATTAA -ATAA TATAA TAT-A -ATAA TATAA TATAA TATAA TATAA T-T-A
1 TA-TAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
439063 TAATAA TATAA TAT
1 T-ATAA TATAA TAT
439077 TTTTTGACTT
Statistics
Matches: 325, Mismatches: 0, Indels: 50
0.87 0.00 0.13
Matches are distributed among these distances:
3 4 0.01
4 39 0.12
5 251 0.77
6 17 0.05
7 14 0.04
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:438826 original size:88 final size:90
Alignment explanation
Indices: 438722--439076 Score: 489
Period size: 88 Copynumber: 3.9 Consensus size: 90
438712 TGTAATCCTT
438722 TATAATATATATAATATAATATAATATAAATAATATAATA-ATATATAATATAATATAATAT-AT
1 TATAATATATA-AATATAATATAATATAAATAATATAATATA-ATATAATATAATATAATATAAT
438785 ATAAT-ATATAATATAA-ATAATATAA
64 ATAATAATATAATATAATATAATATAA
438810 TATAATATAATAAATATAATAT-ATATAATATAATATAATATAATATAATATAATATAATAT-A-
1 TATAATAT-ATAAATATAATATAATATAA-ATAATATAATATAATATAATATAATATAATATAAT
438872 AT-ATAATATAATATAATATAATATATAA
64 ATAATAATATAATATAATAT-A-ATATAA
*
438900 TATAATATAT-AATATAATATAATATATATAATATAATATAATATAATATAATATAATATAATAT
1 TATAATATATAAATATAATATAATATAAATAATATAATATAATATAATATAATATAATATAATAT
438964 AATATAATATAATATAATATAATATAAA
66 -A-ATAATATAATATAATATAATAT-AA
*
438992 TATAATATAATTAATATAATATATATATTAAATAATATAATAT-A-ATAATATAATATAATATAA
1 TATAATAT-ATAAATATAATATA-ATA-TAAATAATATAATATAATATAATATAATATAATATAA
*
439055 TATAATTATAATAATATAATAT
63 TATAATAAT-ATAATATAATAT
439077 TTTTTGACTT
Statistics
Matches: 245, Mismatches: 3, Indels: 33
0.87 0.01 0.12
Matches are distributed among these distances:
86 2 0.01
87 19 0.08
88 93 0.38
89 13 0.05
90 16 0.07
91 4 0.02
92 15 0.06
93 32 0.13
94 33 0.13
95 4 0.02
96 14 0.06
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (90 bp):
TATAATATATAAATATAATATAATATAAATAATATAATATAATATAATATAATATAATATAATAT
AATAATATAATATAATATAATATAA
Found at i:443933 original size:2 final size:2
Alignment explanation
Indices: 443926--443958 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
443916 GATGAGCAAC
443926 AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
443959 GATTTTGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:461678 original size:3 final size:3
Alignment explanation
Indices: 461670--461699 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
461660 TTTCACTTTA
461670 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
461700 TTCTTCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:462520 original size:3 final size:3
Alignment explanation
Indices: 462506--462540 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
462496 TCCCTAATTT
462506 TAA TAA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
462541 CAACTTAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:464114 original size:7 final size:7
Alignment explanation
Indices: 464102--464144 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
464092 ATGGGCGACC
464102 GAAGGAA
1 GAAGGAA
464109 GAAGGAA
1 GAAGGAA
464116 GAAGGAA
1 GAAGGAA
464123 GAA-GAA
1 GAAGGAA
*
464129 GAA-GAG
1 GAAGGAA
464135 GAA-GAA
1 GAAGGAA
464141 GAAG
1 GAAG
464145 CTTCCGTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 16 0.48
7 17 0.52
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (7 bp):
GAAGGAA
Found at i:464119 original size:3 final size:3
Alignment explanation
Indices: 464106--464144 Score: 51
Period size: 3 Copynumber: 12.3 Consensus size: 3
464096 GCGACCGAAG
*
464106 GAA GAA GGAA GAA GGAA GAA GAA GAA GAG GAA GAA GAA G
1 GAA GAA -GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA G
464145 CTTCCGTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 26 0.81
4 6 0.19
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:471912 original size:18 final size:18
Alignment explanation
Indices: 471889--471926 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
471879 AATAACTTCC
471889 GTTGTATCCGAAATTTCA
1 GTTGTATCCGAAATTTCA
471907 GTTGTATCCGAAATTTCA
1 GTTGTATCCGAAATTTCA
471925 GT
1 GT
471927 AAACAAAACG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (18 bp):
GTTGTATCCGAAATTTCA
Found at i:474468 original size:12 final size:12
Alignment explanation
Indices: 474451--474475 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
474441 ATTCAGGAAA
474451 TCCATTAACTTT
1 TCCATTAACTTT
474463 TCCATTAACTTT
1 TCCATTAACTTT
474475 T
1 T
474476 AATACCGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (12 bp):
TCCATTAACTTT
Found at i:476063 original size:2 final size:2
Alignment explanation
Indices: 476058--476082 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
476048 TATTTTTTGG
476058 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
476083 GTGGGTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:476897 original size:16 final size:17
Alignment explanation
Indices: 476876--476913 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
476866 TCATACAAAC
476876 AAACACCA-GAAGAAGA
1 AAACACCATGAAGAAGA
476892 AAACA-CATGAAGAAGA
1 AAACACCATGAAGAAGA
476908 AAACAC
1 AAACAC
476914 ATTTTAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.63, C:0.18, G:0.16, T:0.03
Consensus pattern (17 bp):
AAACACCATGAAGAAGA
Found at i:476914 original size:16 final size:16
Alignment explanation
Indices: 476884--476915 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
476874 ACAAACACCA
476884 GAAGAAGAAAACACAT
1 GAAGAAGAAAACACAT
476900 GAAGAAGAAAACACAT
1 GAAGAAGAAAACACAT
476916 TTTAGTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.12, G:0.19, T:0.06
Consensus pattern (16 bp):
GAAGAAGAAAACACAT
Found at i:479811 original size:30 final size:30
Alignment explanation
Indices: 479746--479818 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
479736 ACAGAGATAG
* * * *
479746 AGTGACAATTTGTTATAAATTGATAACGTT
1 AGTGACAATTTTTTACAAATCGATAACATT
* *
479776 GGTGACAATTTTTTACAAATCGATAATATT
1 AGTGACAATTTTTTACAAATCGATAACATT
479806 AGTGACTAATTTT
1 AGTGAC-AATTTT
479819 ACTTTGAAAC
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
30 29 0.83
31 6 0.17
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (30 bp):
AGTGACAATTTTTTACAAATCGATAACATT
Found at i:480100 original size:2 final size:2
Alignment explanation
Indices: 480093--480136 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
480083 AAATTTTAAC
480093 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
480135 AT
1 AT
480137 GTGGATGAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:482805 original size:40 final size:40
Alignment explanation
Indices: 482760--482835 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
482750 TTTTTTTTTA
* * * *
482760 ATTTTAATAGAATTATAATTAATTTAAGTAATTTATGATT
1 ATTTTAATAAAAATACAATTAAATTAAGTAATTTATGATT
* *
482800 ATTTTATTAAAAATACAATTAAATTAAGTTATTTAT
1 ATTTTAATAAAAATACAATTAAATTAAGTAATTTAT
482836 TTGTTTAGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (40 bp):
ATTTTAATAAAAATACAATTAAATTAAGTAATTTATGATT
Found at i:483186 original size:19 final size:19
Alignment explanation
Indices: 483162--483207 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
483152 GAATATCAAG
483162 TTAAAATTAA-GCATCAAAA
1 TTAAAATTAATG-ATCAAAA
*
483181 TTAAAATTAATGATCAATA
1 TTAAAATTAATGATCAAAA
483200 TTAAAATT
1 TTAAAATT
483208 TACATATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 24 0.96
20 1 0.04
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (19 bp):
TTAAAATTAATGATCAAAA
Found at i:484109 original size:19 final size:19
Alignment explanation
Indices: 484085--484123 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
484075 TGATACGTCA
*
484085 CATACTATGCTATGTGCGC
1 CATACTATGCTACGTGCGC
484104 CATACTATGCTACGTGCGC
1 CATACTATGCTACGTGCGC
484123 C
1 C
484124 GTAGAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.28
Consensus pattern (19 bp):
CATACTATGCTACGTGCGC
Found at i:484176 original size:30 final size:30
Alignment explanation
Indices: 484141--484198 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
484131 TTTCTTATAA
484141 ATATATGTATAAAAGTTAAACCAAGAGTAT
1 ATATATGTATAAAAGTTAAACCAAGAGTAT
484171 ATATATGTATAAAAGTTAAACCAAGAGT
1 ATATATGTATAAAAGTTAAACCAAGAGT
484199 TGGTTACGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (30 bp):
ATATATGTATAAAAGTTAAACCAAGAGTAT
Found at i:493575 original size:2 final size:2
Alignment explanation
Indices: 493564--493599 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
493554 TTTAACAGGT
493564 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
493600 CTACACATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:495434 original size:21 final size:22
Alignment explanation
Indices: 495384--495439 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
495374 AAATTTTAAT
*
495384 ATAAATTTTAAAAAATAAAAGG
1 ATAAATTTTAAAAAATAAAAGC
*
495406 ATATATTTTAAAAAA-AAACA-C
1 ATAAATTTTAAAAAATAAA-AGC
*
495427 ATAAATTTCAAAA
1 ATAAATTTTAAAA
495440 TAACCCTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 14 0.48
22 15 0.52
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (22 bp):
ATAAATTTTAAAAAATAAAAGC
Found at i:496714 original size:18 final size:19
Alignment explanation
Indices: 496672--496711 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
496662 TTTGGTTTAC
496672 GGAATGGAAGATTACCAGTG
1 GGAATGGAAGATTACCAG-G
* *
496692 GGAATGTAAGATTATCAGG
1 GGAATGGAAGATTACCAGG
496711 G
1 G
496712 AATAGGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (19 bp):
GGAATGGAAGATTACCAGG
Found at i:507365 original size:63 final size:63
Alignment explanation
Indices: 507281--507399 Score: 175
Period size: 63 Copynumber: 1.9 Consensus size: 63
507271 TTGGGTTTCC
* * * * *
507281 TATTTTTCTAGACTTAATATTATGGTTTGAGTCTTAAGATTTGATACTTTAATATTATGATTT
1 TATTATTCTAGACTTAATATTATAGTTTAAATCTTAAAATTTGATACTTTAATATTATGATTT
* *
507344 TATTATTCTAGAGTTAATATTATAGTTTAAATCTTAAAATTTGATATTTTAATATT
1 TATTATTCTAGACTTAATATTATAGTTTAAATCTTAAAATTTGATACTTTAATATT
507400 GTTGTTTGTT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 49 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.52
Consensus pattern (63 bp):
TATTATTCTAGACTTAATATTATAGTTTAAATCTTAAAATTTGATACTTTAATATTATGATTT
Found at i:509526 original size:15 final size:15
Alignment explanation
Indices: 509508--509549 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
509498 CAATGAAGAT
509508 AAATAAACT-AAATAA
1 AAATAAA-TGAAATAA
509523 AAATAAATGAAATAA
1 AAATAAATGAAATAA
509538 AAATAAATGAAA
1 AAATAAATGAAA
509550 AAAGAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 1 0.04
15 25 0.96
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.19
Consensus pattern (15 bp):
AAATAAATGAAATAA
Found at i:509531 original size:34 final size:33
Alignment explanation
Indices: 509485--509561 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 33
509475 GAAGCATGTT
* * * *
509485 AGAAAAAAAAATGCAATGAAGATAAAT-AAACTAA
1 AGAAAAATAAATGAAATAAAAATAAATGAAA--AA
*
509519 ATAAAAATAAATGAAATAAAAATAAATGAAAAA
1 AGAAAAATAAATGAAATAAAAATAAATGAAAAA
509552 AGAAAAATAA
1 AGAAAAATAA
509562 GATAAAGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
33 11 0.31
34 22 0.61
35 3 0.08
ACGTcount: A:0.73, C:0.03, G:0.09, T:0.16
Consensus pattern (33 bp):
AGAAAAATAAATGAAATAAAAATAAATGAAAAA
Found at i:509573 original size:23 final size:22
Alignment explanation
Indices: 509540--509626 Score: 68
Period size: 23 Copynumber: 3.8 Consensus size: 22
509530 TGAAATAAAA
*
509540 ATAAATGAAAAAAGAAAAATAAG
1 ATAAA-GAAAAAAAAAAAATAAG
509563 ATAAAGAAAAAACATAAAAAT-AG
1 ATAAAGAAAAAA-A-AAAAATAAG
** *
509586 AATAAAGATAAAAAACTAAATAAA
1 -ATAAAGA-AAAAAAAAAAATAAG
* *
509610 ATAAAGAACATAAAAAA
1 ATAAAGAAAAAAAAAAA
509627 TGTTGAGTTA
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
22 13 0.25
23 18 0.35
24 15 0.29
25 5 0.10
ACGTcount: A:0.75, C:0.03, G:0.08, T:0.14
Consensus pattern (22 bp):
ATAAAGAAAAAAAAAAAATAAG
Found at i:514526 original size:20 final size:21
Alignment explanation
Indices: 514442--514524 Score: 78
Period size: 21 Copynumber: 3.9 Consensus size: 21
514432 AACAGAACCC
*
514442 CAGGGGGGTATCGATTCCCCT
1 CAGGGGGGAATCGATTCCCCT
** *
514463 GTGGGGGGAATCGGTTCCCCTT
1 CAGGGGGGAATCGATTCCCC-T
* * *
514485 CAAAGGAGGAATCGGTT-CCCT
1 C-AGGGGGGAATCGATTCCCCT
514506 CAGGGGGGAATCGATTCCC
1 CAGGGGGGAATCGATTCCC
514525 TCTGCACCAA
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
20 12 0.25
21 20 0.42
22 4 0.08
23 12 0.25
ACGTcount: A:0.18, C:0.25, G:0.35, T:0.22
Consensus pattern (21 bp):
CAGGGGGGAATCGATTCCCCT
Found at i:520667 original size:18 final size:18
Alignment explanation
Indices: 520644--520690 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
520634 CAATCAATCC
*
520644 ACAAATTCAAACATCCAA
1 ACAAATCCAAACATCCAA
520662 ACAAATCCAAACATCCAA
1 ACAAATCCAAACATCCAA
520680 ACAAATCCAAA
1 ACAAATCCAAA
520691 GTCACAGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.13
Consensus pattern (18 bp):
ACAAATCCAAACATCCAA
Found at i:520671 original size:10 final size:10
Alignment explanation
Indices: 520644--520690 Score: 57
Period size: 10 Copynumber: 5.1 Consensus size: 10
520634 CAATCAATCC
*
520644 ACAAATTCAA
1 ACAAATCCAA
520654 AC--ATCCAA
1 ACAAATCCAA
520662 ACAAATCCAA
1 ACAAATCCAA
520672 AC--ATCCAA
1 ACAAATCCAA
520680 ACAAATCCAA
1 ACAAATCCAA
520690 A
1 A
520691 GTCACAGAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
8 15 0.47
10 17 0.53
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.13
Consensus pattern (10 bp):
ACAAATCCAA
Found at i:522275 original size:19 final size:19
Alignment explanation
Indices: 522251--522287 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
522241 AATCAAAAAA
522251 AATTTTATTTT-GAAAATTT
1 AATTTT-TTTTGGAAAATTT
522270 AATTTTTTTTGGAAAATT
1 AATTTTTTTTGGAAAATT
522288 CTTGTGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (19 bp):
AATTTTTTTTGGAAAATTT
Found at i:522725 original size:20 final size:20
Alignment explanation
Indices: 522696--522733 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
522686 CCCCTTCAAA
*
522696 GGGGGAATCGGTTCCCTCAT
1 GGGGGAATCGATTCCCTCAT
*
522716 GGGGGGATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
522734 TGCACCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAT
Found at i:526555 original size:22 final size:21
Alignment explanation
Indices: 526513--526552 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
526503 GAGCTTATTT
*
526513 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
526534 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
526553 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:529321 original size:29 final size:31
Alignment explanation
Indices: 529288--529346 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
529278 CGTATGATTT
529288 TGAAAC-AAA-TAAAAATTTAGGTATTAAAA
1 TGAAACAAAATTAAAAATTTAGGTATTAAAA
*
529317 TGAAACAAAATTAATAATTTAGGTATTAAA
1 TGAAACAAAATTAAAAATTTAGGTATTAAA
529347 TATATAGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 6 0.22
30 3 0.11
31 18 0.67
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (31 bp):
TGAAACAAAATTAAAAATTTAGGTATTAAAA
Found at i:535352 original size:6 final size:6
Alignment explanation
Indices: 535341--535418 Score: 61
Period size: 6 Copynumber: 13.0 Consensus size: 6
535331 AGTTGGACCT
* * * * *
535341 AAAATA AAAATA AAAATG AAAGTA AATAATA AAAACA AAAACA ATAAT-
1 AAAATA AAAATA AAAATA AAAATA AA-AATA AAAATA AAAATA AAAATA
* *
535389 AAAAT- AAAATA AAAAGTA ATAATA ATAATA
1 AAAATA AAAATA AAAA-TA AAAATA AAAATA
535419 TAATATATAT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
5 9 0.15
6 41 0.68
7 10 0.17
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:535447 original size:27 final size:26
Alignment explanation
Indices: 535413--535472 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 26
535403 AGTAATAATA
*
535413 ATAATATAATATATATTTT-AAAACTAT
1 ATAATAT-AT-TATATTTTAAAAACCAT
535440 ATAATATATTATATTTTCAAAAACCAT
1 ATAATATATTATATTTT-AAAAACCAT
535467 ATAATA
1 ATAATA
535473 CGTTTTCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 8 0.27
26 2 0.07
27 20 0.67
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.42
Consensus pattern (26 bp):
ATAATATATTATATTTTAAAAACCAT
Found at i:535468 original size:20 final size:21
Alignment explanation
Indices: 535445--535484 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
535435 ACTATATAAT
*
535445 ATATTATA-TTTTCAAAAACC
1 ATATAATACTTTTCAAAAACC
535465 ATATAATACGTTTTCAAAAA
1 ATATAATAC-TTTTCAAAAA
535485 TTATATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (21 bp):
ATATAATACTTTTCAAAAACC
Found at i:535514 original size:27 final size:25
Alignment explanation
Indices: 535483--535574 Score: 98
Period size: 26 Copynumber: 3.6 Consensus size: 25
535473 CGTTTTCAAA
*
535483 AATTATATATTTTTTAAAACCTATAT
1 AATTATATATTTTTCAAAA-CTATAT
535509 ACATTATATA-TTTTCAAAAACTATAT
1 A-ATTATATATTTTTC-AAAACTATAT
*
535535 -ATATATATATATTTCAAAACTATAT
1 AAT-TATATATTTTTCAAAACTATAT
*
535560 ATTATATATATTTTT
1 AAT-TATATATTTTT
535575 TAAACGACAT
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
24 2 0.04
25 16 0.28
26 27 0.47
27 12 0.21
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (25 bp):
AATTATATATTTTTCAAAACTATAT
Found at i:535522 original size:25 final size:23
Alignment explanation
Indices: 535483--535568 Score: 84
Period size: 27 Copynumber: 3.4 Consensus size: 23
535473 CGTTTTCAAA
535483 AATTATATATTTTTTAAAACCTATAT
1 AATTATATA--TTTTAAAA-CTATAT
535509 ACATTATATATTTTCAAAAACTATAT
1 A-ATTATATATTTT--AAAACTATAT
*
535535 ATATATATATATTTCAAAACTATAT
1 A-AT-TATATATTTTAAAACTATAT
535560 -ATTATATAT
1 AATTATATAT
535569 ATTTTTTAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
22 7 0.13
23 2 0.04
25 14 0.26
26 10 0.19
27 21 0.39
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (23 bp):
AATTATATATTTTAAAACTATAT
Found at i:535579 original size:25 final size:25
Alignment explanation
Indices: 535484--535595 Score: 113
Period size: 25 Copynumber: 4.4 Consensus size: 25
535474 GTTTTCAAAA
535484 ATTATATAT-TTTTTAAAACCTATAT
1 ATTATATATATTTTTAAAA-CTATAT
**
535509 ACATTATATAT-TTTCAAAAACTATAT
1 --ATTATATATATTTTTAAAACTATAT
*
535535 A-TATATATATATTTCAAAACTATAT
1 ATTATATATAT-TTTTAAAACTATAT
* * *
535560 ATTATATATATTTTTTAAACGACAT
1 ATTATATATATTTTTAAAACTATAT
535585 ATTATATATAT
1 ATTATATATAT
535596 ATATCGTATT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
23 7 0.09
24 2 0.03
25 34 0.46
26 15 0.20
27 16 0.22
ACGTcount: A:0.44, C:0.08, G:0.01, T:0.47
Consensus pattern (25 bp):
ATTATATATATTTTTAAAACTATAT
Found at i:552762 original size:5 final size:5
Alignment explanation
Indices: 552752--552781 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
552742 GAACATGTTG
552752 TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA
552782 CTCACCATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:554106 original size:24 final size:24
Alignment explanation
Indices: 554073--554129 Score: 105
Period size: 24 Copynumber: 2.3 Consensus size: 24
554063 TATAATTCAC
554073 ATTTACACAAAGAACAGAAATACCT
1 ATTT-CACAAAGAACAGAAATACCT
554098 ATTTCACAAAGAACAGAAATACCT
1 ATTTCACAAAGAACAGAAATACCT
554122 ATTTCACA
1 ATTTCACA
554130 TTTATCTATC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 28 0.88
25 4 0.12
ACGTcount: A:0.49, C:0.21, G:0.07, T:0.23
Consensus pattern (24 bp):
ATTTCACAAAGAACAGAAATACCT
Found at i:560958 original size:118 final size:118
Alignment explanation
Indices: 560750--560988 Score: 478
Period size: 118 Copynumber: 2.0 Consensus size: 118
560740 CGTTTATATT
560750 AACTAACAGCAGAAAACAATATAGAACTAACTGCTAAAATTGTCACTGAAACGTAGCAATAGAAA
1 AACTAACAGCAGAAAACAATATAGAACTAACTGCTAAAATTGTCACTGAAACGTAGCAATAGAAA
560815 CAATCATTTTGCTACTCACCGAGGATCATTTCCTGATAACGAAAGATAAACCC
66 CAATCATTTTGCTACTCACCGAGGATCATTTCCTGATAACGAAAGATAAACCC
560868 AACTAACAGCAGAAAACAATATAGAACTAACTGCTAAAATTGTCACTGAAACGTAGCAATAGAAA
1 AACTAACAGCAGAAAACAATATAGAACTAACTGCTAAAATTGTCACTGAAACGTAGCAATAGAAA
560933 CAATCATTTTGCTACTCACCGAGGATCATTTCCTGATAACGAAAGATAAACCC
66 CAATCATTTTGCTACTCACCGAGGATCATTTCCTGATAACGAAAGATAAACCC
560986 AAC
1 AAC
560989 CAGTAGGCTT
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 121 1.00
ACGTcount: A:0.44, C:0.21, G:0.13, T:0.22
Consensus pattern (118 bp):
AACTAACAGCAGAAAACAATATAGAACTAACTGCTAAAATTGTCACTGAAACGTAGCAATAGAAA
CAATCATTTTGCTACTCACCGAGGATCATTTCCTGATAACGAAAGATAAACCC
Found at i:566372 original size:22 final size:22
Alignment explanation
Indices: 566344--566386 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
566334 CGAGGTTAAA
*
566344 AACCTATGCCACAAATAGAAAT
1 AACCTATACCACAAATAGAAAT
*
566366 AACCTATACCAGAAATAGAAA
1 AACCTATACCACAAATAGAAA
566387 GAATAGAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.16
Consensus pattern (22 bp):
AACCTATACCACAAATAGAAAT
Found at i:566735 original size:18 final size:19
Alignment explanation
Indices: 566709--566744 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
566699 ATATAAAAGA
566709 AAACACAAAA-TTTGAAAT
1 AAACACAAAACTTTGAAAT
*
566727 AAACCCAAAACTTTGAAA
1 AAACACAAAACTTTGAAA
566745 ACCTTCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.58, C:0.17, G:0.06, T:0.19
Consensus pattern (19 bp):
AAACACAAAACTTTGAAAT
Found at i:580730 original size:21 final size:22
Alignment explanation
Indices: 580668--580730 Score: 65
Period size: 23 Copynumber: 2.9 Consensus size: 22
580658 CAAAAGACAG
580668 AGAAAAACATGTCATAAAGCCAA
1 AGAAAAACATGTCATAAAGCC-A
* ** *
580691 AGATAAATGTGTCATAAAGGC-
1 AGAAAAACATGTCATAAAGCCA
*
580712 AGAAAAACATGTCACAAAG
1 AGAAAAACATGTCATAAAG
580731 ACATAATTAT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
21 15 0.47
23 17 0.53
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.16
Consensus pattern (22 bp):
AGAAAAACATGTCATAAAGCCA
Found at i:586431 original size:2 final size:2
Alignment explanation
Indices: 586424--586454 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
586414 GTGGAATTTA
586424 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
586455 AAATTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:590993 original size:11 final size:11
Alignment explanation
Indices: 590977--591006 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
590967 ACACACATAA
590977 AGAGGAGAGAG
1 AGAGGAGAGAG
590988 AGAGGAGAGAG
1 AGAGGAGAGAG
590999 AGA-GAGAG
1 AGAGGAGAG
591007 CACTTTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.26
11 14 0.74
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (11 bp):
AGAGGAGAGAG
Found at i:592898 original size:18 final size:19
Alignment explanation
Indices: 592862--592901 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
592852 AATTATTTTT
*
592862 AAAAAAAATCAAATGAGAG
1 AAAAAAAATCAAATAAGAG
*
592881 AAAAAATATCAAA-AAGAG
1 AAAAAAAATCAAATAAGAG
592899 AAA
1 AAA
592902 GCAAGTTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.72, C:0.05, G:0.12, T:0.10
Consensus pattern (19 bp):
AAAAAAAATCAAATAAGAG
Found at i:599688 original size:22 final size:23
Alignment explanation
Indices: 599662--599705 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
599652 GAAATTAGAA
**
599662 TAATAATACTCAAA-TTTAATGC
1 TAATAATAAGCAAATTTTAATGC
599684 TAATAATAAGCAAATTTTAATG
1 TAATAATAAGCAAATTTTAATG
599706 TCCATTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (23 bp):
TAATAATAAGCAAATTTTAATGC
Found at i:608798 original size:64 final size:63
Alignment explanation
Indices: 608703--608843 Score: 169
Period size: 64 Copynumber: 2.2 Consensus size: 63
608693 CACATTGAAT
* *
608703 GTGCATCGATGCACTCTTTAAAGAAGAAACATCGAATGCAAATGGTGCATCGATGCATAAGG-A
1 GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAAGGCAAATGGTGCATCGATGCAT-AGGTA
* * * * * *
608766 GTGCATCGATGCATCCCTTTAAA-ATGAAAACATCGAAGGTAATTTGTGTATCGATGCATGGGTA
1 GTGCATCGATGCA-CCCTTTAAAGAAG-AAACATCGAAGGCAAATGGTGCATCGATGCATAGGTA
608830 GTGCATCGATGCAC
1 GTGCATCGATGCAC
608844 TGTAACATGC
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
63 18 0.27
64 49 0.73
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCACCCTTTAAAGAAGAAACATCGAAGGCAAATGGTGCATCGATGCATAGGTA
Found at i:609907 original size:31 final size:31
Alignment explanation
Indices: 609869--609933 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
609859 AGAGTCGAGG
*
609869 GTTTACCTATGTCTTTCGAGA-CATATGGACA
1 GTTTACCTAGGTCTTTCGAGATC-TATGGACA
* *
609900 GTTTACCTAGGTTTTTCGGGATCTATGGACA
1 GTTTACCTAGGTCTTTCGAGATCTATGGACA
609931 GTT
1 GTT
609934 GCCGAGGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (31 bp):
GTTTACCTAGGTCTTTCGAGATCTATGGACA
Found at i:609980 original size:29 final size:30
Alignment explanation
Indices: 609922--609990 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
609912 TTTTCGGGAT
* * *
609922 CTATGGACAGTTGCCGAGGTTCTTTATGAC
1 CTATGGATAGTTACCGAGGGTCTTTATGAC
*
609952 CTATGGATAGTTACCG-GGGTCTTTGTGAC
1 CTATGGATAGTTACCGAGGGTCTTTATGAC
*
609981 CTCTGGATAG
1 CTATGGATAG
609991 GTCCTTCGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 20 0.59
30 14 0.41
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (30 bp):
CTATGGATAGTTACCGAGGGTCTTTATGAC
Found at i:610457 original size:4 final size:4
Alignment explanation
Indices: 610450--610912 Score: 926
Period size: 4 Copynumber: 115.8 Consensus size: 4
610440 TAATGACATA
610450 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
610498 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
610546 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
610594 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
610642 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
610690 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
610738 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
610786 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
610834 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
610882 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
610913 TTGTTACATA
Statistics
Matches: 459, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 459 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:612564 original size:16 final size:17
Alignment explanation
Indices: 612539--612588 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
612529 TATGGAATTG
*
612539 GATTCCAATTCCT-ACA
1 GATTCTAATTCCTCACA
612555 GATTCTAATTCCTCCACA
1 GATTCTAATTCCT-CACA
612573 GATTCTAATTCTCTCA
1 GATTCTAATTC-CTCA
612589 TAAACATTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 12 0.40
18 16 0.53
19 2 0.07
ACGTcount: A:0.28, C:0.30, G:0.06, T:0.36
Consensus pattern (17 bp):
GATTCTAATTCCTCACA
Found at i:619689 original size:20 final size:21
Alignment explanation
Indices: 619660--619711 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
619650 TAGATTATAG
*
619660 TATC-GATATTATTCTTGTAA
1 TATCTGATATTATTCTTGCAA
*
619680 TAT-TGATATTGTTCTTGCAA
1 TATCTGATATTATTCTTGCAA
619700 TATCTG-TATTAT
1 TATCTGATATTAT
619712 GAGTTCCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.52
Consensus pattern (21 bp):
TATCTGATATTATTCTTGCAA
Found at i:619778 original size:15 final size:15
Alignment explanation
Indices: 619769--619805 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
619759 GTACCGATAT
*
619769 TGTGATTACCAATAC
1 TGTGATTACCAATAA
*
619784 TGCGATTACCAATAA
1 TGTGATTACCAATAA
619799 TGTGATT
1 TGTGATT
619806 GTAGTACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (15 bp):
TGTGATTACCAATAA
Found at i:620079 original size:66 final size:66
Alignment explanation
Indices: 620007--620132 Score: 225
Period size: 66 Copynumber: 1.9 Consensus size: 66
619997 TAACGGTGAA
*
620007 GGTACTAAAATGAAATAAAAAGTAAAAATTATGTGTGATTTTGAAATAAATGAAAGTTTACGCGA
1 GGTACTAAAATGAAATAAAAAGTAAAAATTATATGTGATTTTGAAATAAATGAAAGTTTACGCGA
620072 G
66 G
* *
620073 GGTACTAAAATGAAATAAAAAGTAAACATTATATGTGATTTTGAAATAAATGAACGTTTA
1 GGTACTAAAATGAAATAAAAAGTAAAAATTATATGTGATTTTGAAATAAATGAAAGTTTA
620133 GGTATTAAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.30
Consensus pattern (66 bp):
GGTACTAAAATGAAATAAAAAGTAAAAATTATATGTGATTTTGAAATAAATGAAAGTTTACGCGA
G
Found at i:620149 original size:60 final size:61
Alignment explanation
Indices: 620006--620152 Score: 197
Period size: 66 Copynumber: 2.3 Consensus size: 61
619996 TTAACGGTGA
*
620006 AGGTACTAAAATGAAATAAAAAGTAAAAATTATGTGTGATTTTGAAATAAATGAAAGTTTACGC
1 AGGTACTAAAATGAAATAAAAAGTAAAAATTATATGTGATTTTGAAATAAATGAAAGTTT---C
* *
620070 GAGGGTACTAAAATGAAATAAAAAGTAAACATTATATGTGATTTTGAAATAAATGAACGTTT-
1 -A-GGTACTAAAATGAAATAAAAAGTAAAAATTATATGTGATTTTGAAATAAATGAAAGTTTC
* *
620132 AGGTATTAAAATAAAATAAAA
1 AGGTACTAAAATGAAATAAAA
620153 CTAATAATTT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
60 18 0.24
61 1 0.01
65 1 0.01
66 56 0.74
ACGTcount: A:0.50, C:0.04, G:0.16, T:0.29
Consensus pattern (61 bp):
AGGTACTAAAATGAAATAAAAAGTAAAAATTATATGTGATTTTGAAATAAATGAAAGTTTC
Found at i:628470 original size:16 final size:14
Alignment explanation
Indices: 628439--628517 Score: 70
Period size: 16 Copynumber: 5.3 Consensus size: 14
628429 ATAAAATATC
*
628439 TATTTTAATTACTA
1 TATTTTAATTATTA
628453 TATTTATACATTATTA
1 TATTT-TA-ATTATTA
628469 TATTTTAATTATTTA
1 TATTTTAATTA-TTA
628484 TTATATTTAATTATTA
1 -TAT-TTTAATTATTA
* *
628500 GTATTATATTTATT-
1 -TATTTTAATTATTA
628514 TATT
1 TATT
628518 ATATTTTTTA
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
13 4 0.07
14 9 0.16
15 15 0.27
16 20 0.36
17 8 0.14
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (14 bp):
TATTTTAATTATTA
Found at i:628518 original size:32 final size:31
Alignment explanation
Indices: 628462--628523 Score: 97
Period size: 32 Copynumber: 2.0 Consensus size: 31
628452 ATATTTATAC
*
628462 ATTATTATATTTTAATTATTTATTATATTTA
1 ATTATTATATTATAATTATTTATTATATTTA
*
628493 ATTATTAGTATTATATTTATTTATTATATTT
1 ATTATTA-TATTATAATTATTTATTATATTT
628524 TTTAATTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 7 0.25
32 21 0.75
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (31 bp):
ATTATTATATTATAATTATTTATTATATTTA
Found at i:629023 original size:36 final size:36
Alignment explanation
Indices: 628976--629056 Score: 108
Period size: 36 Copynumber: 2.2 Consensus size: 36
628966 AATTAAACAG
* *
628976 GGACGGGGAAAAACCGTTTATGCTAAACGGGGACGA
1 GGACGGGGAAAAACCATTTATGCTAAACGGGAACGA
* * * *
629012 GGACGGGGAAAAACTATTTATGTTAAATGGGAACGG
1 GGACGGGGAAAAACCATTTATGCTAAACGGGAACGA
629048 GGACGGGGA
1 GGACGGGGA
629057 CATGTTTAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.33, C:0.12, G:0.38, T:0.16
Consensus pattern (36 bp):
GGACGGGGAAAAACCATTTATGCTAAACGGGAACGA
Found at i:633014 original size:25 final size:23
Alignment explanation
Indices: 632963--633023 Score: 70
Period size: 25 Copynumber: 2.6 Consensus size: 23
632953 AATTTTTTTA
*
632963 ATTTTTATAT-GTTTTAGATAAT
1 ATTTTTATATATTTTTAGATAAT
*
632985 TTTTTTATATATTTTTATTGATAAT
1 ATTTTTATATATTTTTA--GATAAT
*
633010 ATTTTTTTATATTT
1 ATTTTTATATATTT
633024 AAAATTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 9 0.28
23 5 0.16
25 18 0.56
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (23 bp):
ATTTTTATATATTTTTAGATAAT
Found at i:633170 original size:21 final size:21
Alignment explanation
Indices: 633145--633186 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
633135 TTAAACATAT
633145 ATATAGGGTAAAGTATATAAA
1 ATATAGGGTAAAGTATATAAA
633166 ATATAGGGTAAAGTATATAAA
1 ATATAGGGTAAAGTATATAAA
633187 TAGTCCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (21 bp):
ATATAGGGTAAAGTATATAAA
Found at i:633512 original size:2 final size:2
Alignment explanation
Indices: 633505--633534 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
633495 CCACCCCGAT
633505 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
633535 TTTATATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:635170 original size:22 final size:20
Alignment explanation
Indices: 635144--635185 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
635134 GTAAAAATTA
*
635144 AATATTGAAAACTCATCAAAAT
1 AATATT-AAAACACAT-AAAAT
635166 AATATTAAAACACATAAAAT
1 AATATTAAAACACATAAAAT
635186 TCAACTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 8 0.42
22 6 0.32
ACGTcount: A:0.60, C:0.12, G:0.02, T:0.26
Consensus pattern (20 bp):
AATATTAAAACACATAAAAT
Found at i:638052 original size:3 final size:3
Alignment explanation
Indices: 638046--638074 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
638036 TGTGAGGAGG
638046 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
638075 GGGAGTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:652074 original size:11 final size:11
Alignment explanation
Indices: 652047--652078 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
652037 ATTTATCATT
652047 TTAAAACACAC
1 TTAAAACACAC
652058 TT-AAACACAC
1 TTAAAACACAC
652068 TTAAAACACAC
1 TTAAAACACAC
652079 ACTTCTCCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (11 bp):
TTAAAACACAC
Found at i:653861 original size:2 final size:2
Alignment explanation
Indices: 653854--653900 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
653844 TTGAGAAACA
653854 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
653896 AT AT A
1 AT AT A
653901 GTTTTCATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:654415 original size:23 final size:21
Alignment explanation
Indices: 654364--654427 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
654354 ATTCCCCTGT
654364 GGGGGGGAATCGGTTCCCCTTCA
1 GGGGGGGAATCGGTT-CCC-TCA
**
654387 AAGGGGGAATCGGTTCCCTCA
1 GGGGGGGAATCGGTTCCCTCA
*
654408 TGGGGGGG-ATCGATTCCCTC
1 -GGGGGGGAATCGGTTCCCTC
654428 TGCACGAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 14 0.40
22 8 0.23
23 13 0.37
ACGTcount: A:0.16, C:0.25, G:0.38, T:0.22
Consensus pattern (21 bp):
GGGGGGGAATCGGTTCCCTCA
Found at i:662813 original size:13 final size:14
Alignment explanation
Indices: 662791--662820 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
662781 TCATCACTCT
662791 TTTTTCATTATTTA
1 TTTTTCATTATTTA
662805 TTTTT-ATTATTTA
1 TTTTTCATTATTTA
662818 TTT
1 TTT
662821 ACTTTCATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTCATTATTTA
Found at i:662820 original size:17 final size:17
Alignment explanation
Indices: 662798--662833 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
662788 TCTTTTTTCA
* *
662798 TTATTTATTTTTATTAT
1 TTATTTACTTTCATTAT
662815 TTATTTACTTTCATTAT
1 TTATTTACTTTCATTAT
662832 TT
1 TT
662834 CTAAACCCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (17 bp):
TTATTTACTTTCATTAT
Found at i:665600 original size:42 final size:42
Alignment explanation
Indices: 665512--665603 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
665502 ATTTTAGTGG
* * * * *
665512 GTAGTGAGCGGGTGTAGATTTAGAAAGTGGTACCCATTGCGG
1 GTAGTGGGCGGATGTAGATTTAGAAAGTGATACCCATCGCGA
* *
665554 GTAGTGGGCGGATGT-GAATTTAGAAAGTGATATCTATCGCGA
1 GTAGTGGGCGGATGTAG-ATTTAGAAAGTGATACCCATCGCGA
665596 GTAGTGGG
1 GTAGTGGG
665604 TGGGTGATGG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.25, C:0.10, G:0.38, T:0.27
Consensus pattern (42 bp):
GTAGTGGGCGGATGTAGATTTAGAAAGTGATACCCATCGCGA
Found at i:669399 original size:31 final size:31
Alignment explanation
Indices: 669364--669429 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
669354 AATAGTAGAG
* *
669364 GGACCAAAATAATTCTTTCGATTTTATAAAA
1 GGACCAAAAGAATTATTTCGATTTTATAAAA
*
669395 GGACCAAAAGAATTATTTTGATTTTATAAAA
1 GGACCAAAAGAATTATTTCGATTTTATAAAA
669426 GGAC
1 GGAC
669430 TTCTAGTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (31 bp):
GGACCAAAAGAATTATTTCGATTTTATAAAA
Found at i:670602 original size:2 final size:2
Alignment explanation
Indices: 670595--670620 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
670585 CTTTGTTTTC
670595 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
670621 CCGTACGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:670940 original size:2 final size:2
Alignment explanation
Indices: 670933--670958 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
670923 TTCTACAATC
670933 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
670959 TCATATGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:678867 original size:23 final size:23
Alignment explanation
Indices: 678840--678885 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
678830 TGGGACAAAC
678840 GAGTTAACAATTCTTTGAACCCA
1 GAGTTAACAATTCTTTGAACCCA
678863 GAGTTAACAATTCTTTGAACCCA
1 GAGTTAACAATTCTTTGAACCCA
678886 AAATCCTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (23 bp):
GAGTTAACAATTCTTTGAACCCA
Found at i:687997 original size:54 final size:54
Alignment explanation
Indices: 687915--688021 Score: 187
Period size: 54 Copynumber: 2.0 Consensus size: 54
687905 GCTCAAAGAT
* *
687915 AACTCTTAGCTAATTGACATTGAACGCTCACAACCATGACATTCATGGTGCTCG
1 AACTCTCAGCCAATTGACATTGAACGCTCACAACCATGACATTCATGGTGCTCG
*
687969 AACTCTCAGCCAATTGATATTGAACGCTCACAACCATGACATTCATGGTGCTC
1 AACTCTCAGCCAATTGACATTGAACGCTCACAACCATGACATTCATGGTGCTC
688022 ACAACCATAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (54 bp):
AACTCTCAGCCAATTGACATTGAACGCTCACAACCATGACATTCATGGTGCTCG
Found at i:688034 original size:54 final size:53
Alignment explanation
Indices: 687915--688036 Score: 174
Period size: 54 Copynumber: 2.2 Consensus size: 53
687905 GCTCAAAGAT
* *
687915 AACTCTTAGCTAATTGACATTGAACGCTCACAACCATGACATTCATGGTGCTCG
1 AACTC-TAGCCAATTGACATTGAACGCTCACAACCATGACATTCATGGTGCTCC
*
687969 AACTCTCAGCCAATTGATATTGAACGCTCACAACCATGACATTCATGGTGCTCAC
1 AACTCT-AGCCAATTGACATTGAACGCTCACAACCATGACATTCATGGTGCTC-C
688024 AAC-CATAGCCAAT
1 AACTC-TAGCCAAT
688037 CAGCAATGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
53 1 0.02
54 57 0.92
55 4 0.06
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (53 bp):
AACTCTAGCCAATTGACATTGAACGCTCACAACCATGACATTCATGGTGCTCC
Found at i:690009 original size:2 final size:2
Alignment explanation
Indices: 690002--690035 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
689992 AGTTATTCCA
690002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
690036 TCATAATCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:700210 original size:33 final size:33
Alignment explanation
Indices: 700129--700212 Score: 84
Period size: 33 Copynumber: 2.6 Consensus size: 33
700119 ATTAATTAAT
* *
700129 TATTATTTTTTAACAA-TAGATAATAATGTTTA
1 TATTATTTTTTAAAAATTAGATAATAATATTTA
* * *
700161 T-TCATTTTTAATAAAATTAGA-ATTTAATATTTA
1 TATTATTTTTTA-AAAATTAGATA-ATAATATTTA
700194 TATTATTTTTTAAAAATTA
1 TATTATTTTTTAAAAATTA
700213 ATATTAGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
31 8 0.20
32 5 0.12
33 20 0.49
34 8 0.20
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (33 bp):
TATTATTTTTTAAAAATTAGATAATAATATTTA
Found at i:700279 original size:10 final size:10
Alignment explanation
Indices: 700263--700320 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
700253 AGTTTTACCT
700263 TTTTTATTGA
1 TTTTTATTGA
* *
700273 GTTTTATTCA
1 TTTTTATTGA
700283 TTTTTAATT-A
1 TTTTT-ATTGA
700293 TTTTTTATTGTA
1 -TTTTTATTG-A
700305 TTTTTATTGA
1 TTTTTATTGA
*
700315 ATTTTA
1 TTTTTA
700321 AATATACGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
10 22 0.55
11 17 0.43
12 1 0.03
ACGTcount: A:0.22, C:0.02, G:0.07, T:0.69
Consensus pattern (10 bp):
TTTTTATTGA
Found at i:700319 original size:21 final size:20
Alignment explanation
Indices: 700263--700320 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
700253 AGTTTTACCT
*
700263 TTTTTATTGAGTTTTATTCA
1 TTTTTATTGAATTTTATTCA
* *
700283 TTTTTAATT-ATTTTTTATTGTA
1 TTTTT-ATTGA-ATTTTATT-CA
700305 TTTTTATTGAATTTTA
1 TTTTTATTGAATTTTA
700321 AATATACGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
20 6 0.19
21 18 0.58
22 7 0.23
ACGTcount: A:0.22, C:0.02, G:0.07, T:0.69
Consensus pattern (20 bp):
TTTTTATTGAATTTTATTCA
Found at i:700920 original size:185 final size:184
Alignment explanation
Indices: 700608--700996 Score: 624
Period size: 185 Copynumber: 2.1 Consensus size: 184
700598 TTTTCTAATT
* * * *
700608 TATATAA-AAATTAAATATTTTTTAATTCAAAAAAAGTTTATAATTAATTTAAATAATATATAAT
1 TATATAATATATTTAATATTTTTCAATTCAAAAAAAGTTTACAATTAATTTAAATAATATATAAT
* *
700672 TATAAAATAAAAATTTTAGATAAATTTTTTAATTAATTAGTATTGATTTAAGTTTAAAAGTTATT
66 TATAAAATAAAAAATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
* *
700737 GGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTT-AGCCCATATGTTATA
131 AGATCTTAAATTATTAATTGGGTTTTAAATGATTTGGG-TTGAGCCCATATG-T-TA
700793 TATATAATATATTTAATATTTTTCAATT-AAAAAACAGTTTACAATTAATTTAAATAATATATAA
1 TATATAATATATTTAATATTTTTCAATTCAAAAAA-AGTTTACAATTAATTTAAATAATATATAA
*
700857 TTATAAAATAAAAAATTTATAT-AATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTAT
65 TTATAAAATAAAAAATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTAT
*
700921 TAGATCTTAAATTATTAATTGGGTTTTAAATGATTTGGGTTGAGCTCATATGTTA
130 TAGATCTTAAATTATTAATTGGGTTTTAAATGATTTGGGTTGAGCCCATATGTTA
700976 TATATAATATATTTAATATTT
1 TATATAATATATTTAATATTT
700997 AAAATTTAAT
Statistics
Matches: 191, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
183 23 0.12
184 3 0.02
185 100 0.52
186 65 0.34
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.46
Consensus pattern (184 bp):
TATATAATATATTTAATATTTTTCAATTCAAAAAAAGTTTACAATTAATTTAAATAATATATAAT
TATAAAATAAAAAATTTAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
AGATCTTAAATTATTAATTGGGTTTTAAATGATTTGGGTTGAGCCCATATGTTA
Found at i:701021 original size:9 final size:9
Alignment explanation
Indices: 701002--701035 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
700992 TATTTAAAAT
701002 TTAATTTCGG
1 TTAA-TTCGG
701012 TTAATTCGG
1 TTAATTCGG
701021 TTAATTCGG
1 TTAATTCGG
701030 TTAATT
1 TTAATT
701036 AACCAAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 20 0.83
10 4 0.17
ACGTcount: A:0.24, C:0.09, G:0.18, T:0.50
Consensus pattern (9 bp):
TTAATTCGG
Found at i:708509 original size:13 final size:13
Alignment explanation
Indices: 708491--708517 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
708481 TTACAAATGC
708491 GCATATGAAGACT
1 GCATATGAAGACT
708504 GCATATGAAGACT
1 GCATATGAAGACT
708517 G
1 G
708518 TTCAACTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (13 bp):
GCATATGAAGACT
Found at i:718631 original size:27 final size:27
Alignment explanation
Indices: 718599--718662 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
718589 TTTACAAAAG
718599 CATATCTCTATAGGAATGGTAACAAAT
1 CATATCTCTATAGGAATGGTAACAAAT
718626 CATATCTCTATAGGAATGGTAACAAAT
1 CATATCTCTATAGGAATGGTAACAAAT
718653 C--ATCTCTATA
1 CATATCTCTATA
718663 ATTCCTACAC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 9 0.24
27 28 0.76
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.31
Consensus pattern (27 bp):
CATATCTCTATAGGAATGGTAACAAAT
Found at i:722392 original size:27 final size:27
Alignment explanation
Indices: 722361--722428 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
722351 TCTATTTACA
722361 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
722388 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
722415 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
722429 ATTCCTACAC
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 9 0.22
27 32 0.78
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGGTAAC
Found at i:723918 original size:18 final size:18
Alignment explanation
Indices: 723895--723947 Score: 106
Period size: 18 Copynumber: 2.9 Consensus size: 18
723885 ACTGAATATT
723895 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
723913 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
723931 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
723948 GATAATCTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.26, C:0.34, G:0.23, T:0.17
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:726220 original size:30 final size:30
Alignment explanation
Indices: 726074--726221 Score: 94
Period size: 30 Copynumber: 5.1 Consensus size: 30
726064 AACTTTTATT
* * *
726074 TTTATTCAATTTATATTTCTATTATTTACA
1 TTTATGCATTTTATTTTTCTATTATTTACA
* * *
726104 TTTATGCACTTTGTTTTTCTATTATTTATA
1 TTTATGCATTTTATTTTTCTATTATTTACA
* * * *
726134 TTTCTGCCCTTTTATTTAT-T-TTATTT-TA
1 TTTATG-CATTTTATTTTTCTATTATTTACA
* * *
726162 -TT-TCCATTCTTTAATTTT-TGTT-TTTACA
1 TTTATGCA-T-TTTATTTTTCTATTATTTACA
*
726190 TTTATGCATTTTATTTTTCTGTTATTTACA
1 TTTATGCATTTTATTTTTCTATTATTTACA
726220 TT
1 TT
726222 ACTGTCCTTT
Statistics
Matches: 92, Mismatches: 17, Indels: 18
0.72 0.13 0.14
Matches are distributed among these distances:
25 1 0.01
26 2 0.02
27 13 0.14
28 13 0.14
29 13 0.14
30 42 0.46
31 8 0.09
ACGTcount: A:0.20, C:0.11, G:0.04, T:0.64
Consensus pattern (30 bp):
TTTATGCATTTTATTTTTCTATTATTTACA
Found at i:727864 original size:23 final size:23
Alignment explanation
Indices: 727838--727882 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
727828 CGATTAAAAT
*
727838 ATTAAGACCTAATAA-ATTTTAAC
1 ATTAA-ACCCAATAATATTTTAAC
*
727861 ATTAAACCCATTAATATTTTAA
1 ATTAAACCCAATAATATTTTAA
727883 AGCTCAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (23 bp):
ATTAAACCCAATAATATTTTAAC
Found at i:728240 original size:2 final size:2
Alignment explanation
Indices: 728233--728258 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
728223 ATAGTAATTC
728233 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
728259 TAATTTGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:731045 original size:22 final size:22
Alignment explanation
Indices: 731020--731075 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
731010 TATTAGTCGT
731020 GACTTATCGCAA-TATTACTGGA
1 GACTTATCGCAACT-TTACTGGA
*
731042 GACTTAATCACAACTTTACTGGA
1 GACTT-ATCGCAACTTTACTGGA
*
731065 GATTTATCGCA
1 GACTTATCGCA
731076 CTGTTATCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 10 0.34
23 18 0.62
24 1 0.03
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (22 bp):
GACTTATCGCAACTTTACTGGA
Found at i:743682 original size:8 final size:8
Alignment explanation
Indices: 743669--743696 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
743659 AGATTCTCCC
743669 ATATGTAT
1 ATATGTAT
743677 ATATGTAT
1 ATATGTAT
743685 ATATGTAT
1 ATATGTAT
743693 ATAT
1 ATAT
743697 ATCTTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (8 bp):
ATATGTAT
Found at i:747227 original size:9 final size:10
Alignment explanation
Indices: 747209--747247 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
747199 AAAATGAGTG
747209 AAAATGAAAA
1 AAAATGAAAA
747219 AAAAT--AAA
1 AAAATGAAAA
747227 AAAAT-AAAA
1 AAAATGAAAA
747236 AAAATGAAAA
1 AAAATGAAAA
747246 AA
1 AA
747248 TGGAAAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 8 0.30
9 8 0.30
10 11 0.41
ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10
Consensus pattern (10 bp):
AAAATGAAAA
Found at i:747229 original size:17 final size:18
Alignment explanation
Indices: 747209--747256 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
747199 AAAATGAGTG
747209 AAAATGAAAAAAAATAAA
1 AAAATGAAAAAAAATAAA
*
747227 AAAAT-AAAAAAAATGAA
1 AAAATGAAAAAAAATAAA
747244 AAAATGGAAAAAA
1 AAAAT-GAAAAAA
747257 GAAGGGTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.59
18 5 0.19
19 6 0.22
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.10
Consensus pattern (18 bp):
AAAATGAAAAAAAATAAA
Found at i:748318 original size:55 final size:53
Alignment explanation
Indices: 748249--748456 Score: 228
Period size: 53 Copynumber: 3.9 Consensus size: 53
748239 AGGTTTCCCA
*
748249 ACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
1 ACGATTGTTGAAGATTG-T-GAGTCTCATACTCTCTAAAGAAATAGGGAGCAGAC
* * *
748304 ACGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATA-GGAGGCAGAC
1 ACGATTGTTGAAGATTGTGAGTCTCATACTCTCTAAAGAAATAGGGA-GCAGAC
* * * * *
748357 GCGATCGTTGAAGATTGTGGGTCTTATACTCTCTAAAGAAATAGGGAGCATAC
1 ACGATTGTTGAAGATTGTGAGTCTCATACTCTCTAAAGAAATAGGGAGCAGAC
* * *
748410 ACG--T-TTGAAGATTTTCGAGT-TCTATACTCCCTAAAGAAAGAGGGAGC
1 ACGATTGTTGAAGATTGT-GAGTCTC-ATACTCTCTAAAGAAATAGGGAGC
748457 GAACCTGTTA
Statistics
Matches: 136, Mismatches: 13, Indels: 12
0.84 0.08 0.07
Matches are distributed among these distances:
50 11 0.08
51 25 0.18
52 3 0.02
53 76 0.56
54 4 0.03
55 17 0.12
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (53 bp):
ACGATTGTTGAAGATTGTGAGTCTCATACTCTCTAAAGAAATAGGGAGCAGAC
Found at i:748346 original size:53 final size:53
Alignment explanation
Indices: 748249--748412 Score: 240
Period size: 53 Copynumber: 3.1 Consensus size: 53
748239 AGGTTTCCCA
* *
748249 ACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
1 ACGATTGTTGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
748304 ACGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATA-GGAGGCAGAC
1 ACGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGA-GCAGAC
* * * *
748357 GCGATCGTTGAAGATTGTGGGTCTTATACTCTCTAAAGAAATAGGGAGCATAC
1 ACGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
748410 ACG
1 ACG
748413 TTTGAAGATT
Statistics
Matches: 100, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
52 3 0.03
53 76 0.76
54 4 0.04
55 17 0.17
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (53 bp):
ACGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
Found at i:748444 original size:51 final size:51
Alignment explanation
Indices: 748381--748945 Score: 488
Period size: 51 Copynumber: 10.7 Consensus size: 51
748371 TTGTGGGTCT
* * *
748381 TATACTCTCTAAAGAAATAGGGAGC-ATACACGTTTGAAGATTTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGA-ACCCGTTTGAAGATTTTCGAGTTC
* * *
748432 TATACTCCCTAAAGAAAGAGGGAGCGAACCTGTTAGAAGATGTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATTTTCGAGTTC
* * * * * ** *
748483 CATACTCCCTAGATAAAGAGGGAACAAACCCGTAAGAAGAAGATGTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACCCGT---TTGAAGATTTTCGAGTTC
* * *
748537 TATACTCCCTACAGAAAGAGGGAGCGAACCCGTTTAAAGATGTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATTTTCGAGTTC
* * * * ** *
748588 CATACTCCCTAGATAAAGAGGGAACGAACCCGTAAGAAGAAGATGTTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACCCGT---TTGAAGATTTTCGAGTTC
* *
748642 TATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGCAGAAGATTATTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTT---GAAGATT-TTCGAGTTC
* * * * * *
748697 CATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAAGAAGATATTCGAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTT---GAAGATTTTCGAGTTC
* *
748751 TATACTTCCTGAAAGAAAGAGGGAGCGAA-CCGTTTGAAGATGTTCGAGTTC
1 TATACTCCCT-AAAGAAAGAGGGAGCGAACCCGTTTGAAGATTTTCGAGTTC
* **
748802 TATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATGTTT-GAGTTC
1 TATACTCCCT-AAAGAAAGAGGGAGCGAACCCGT---TTGAAGAT-TTTCGAGTTC
* * * *
748857 TATACTCCCTAGAGAAAGAGGGAGCGAACTCGTTTGCAAATGATTGCTCAAGTTC
1 TATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG--AA-GATT-TTCGAGTTC
* * * *
748912 TATACTCCATGAAGGAAGAGGGAACGAACCCGTT
1 TATACTCCCTAAAGAAAGAGGGAGCGAACCCGTT
748946 GACAGAAGGT
Statistics
Matches: 427, Mismatches: 65, Indels: 40
0.80 0.12 0.08
Matches are distributed among these distances:
51 159 0.37
52 5 0.01
53 3 0.01
54 142 0.33
55 116 0.27
56 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (51 bp):
TATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATTTTCGAGTTC
Found at i:748537 original size:105 final size:105
Alignment explanation
Indices: 748416--748885 Score: 676
Period size: 105 Copynumber: 4.4 Consensus size: 105
748406 ATACACGTTT
*
748416 GAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTGTTAGAAGATGTTCGAGT
1 GAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTGTTAGAAGATGTTCGAGT
*
748481 TCCATACTCCCTAGATAAAGAGGGAACAAACCCGTAAGAA
66 TCCATACTCCCTAGATAAAGAGGGAACGAACCCGTAAGAA
* *
748521 GAAGATGTTCGAGTTCTATACTCCCTACAGAAAGAGGGAGCGAACCCGTTTA-AAGATGTTCGAG
1 GAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTG-TTAGAAGATGTTCGAG
748585 TTCCATACTCCCTAGATAAAGAGGGAACGAACCCGTAAGAA
65 TTCCATACTCCCTAGATAAAGAGGGAACGAACCCGTAAGAA
* *
748626 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCAT-TTGCAGAAGATTATT
1 GAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAA-CC-TGTT--AGAAGA-TGTT
* **
748690 CGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAA
61 CGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCCGTAAGAA
* * *
748735 GAAGATATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACC-GTTTGAAGATGTTCGAG
1 GAAGATGTTCGAGTTCTATACTCCCT-AAAGAAAGAGGGAGCGAACCTGTTAGAAGATGTTCGAG
* * * * *
748799 TTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAA
65 TTCCATACTCCCT-AGATAAAGAGGGAACGAACCCGTAAGAA
* *
748841 GAAGATGTTTGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAAC
1 GAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAAC
748886 TCGTTTGCAA
Statistics
Matches: 328, Mismatches: 27, Indels: 20
0.87 0.07 0.05
Matches are distributed among these distances:
105 178 0.54
106 55 0.17
107 1 0.00
108 6 0.02
109 71 0.22
110 17 0.05
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (105 bp):
GAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTGTTAGAAGATGTTCGAGT
TCCATACTCCCTAGATAAAGAGGGAACGAACCCGTAAGAA
Found at i:748544 original size:54 final size:52
Alignment explanation
Indices: 748416--748885 Score: 534
Period size: 54 Copynumber: 8.9 Consensus size: 52
748406 ATACACGTTT
* * * *
748416 GAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCTGT-TA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAA
* * * *
748467 GAAGATGTTCGAGTTCCATACTCCCTAGATAAAGAGGGAACAAACCCGTAAGAA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGT--GAA
* **
748521 GAAGATGTTCGAGTTCTATACTCCCTACAGAAAGAGGGAGCGAACCCGTTTA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAA
* * *
748573 -AAGATGTTCGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCCGTAAGAA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGT--GAA
* *
748626 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGCA
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCC--GTGAA
* * * * *
748680 GAAGATTATTCGAGTTCCATACTCCCTAGATAAAGAGGGAACGAACCTGTTTGAA
1 GAAGA-TGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCG--TGAA
* * * **
748735 GAAGATATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAA-CCGT-TT
1 GAAGATGTTCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTGAA
* *
748786 GAAGATGTTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAA
1 GAAGATGTTCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCGT--GAA
*
748841 GAAGATGTTTGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAAC
1 GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAAC
748886 TCGTTTGCAA
Statistics
Matches: 356, Mismatches: 47, Indels: 29
0.82 0.11 0.07
Matches are distributed among these distances:
51 130 0.37
52 6 0.02
53 1 0.00
54 134 0.38
55 84 0.24
56 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (52 bp):
GAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGAA
Found at i:748964 original size:55 final size:55
Alignment explanation
Indices: 748416--748953 Score: 521
Period size: 54 Copynumber: 10.1 Consensus size: 55
748406 ATACACGTTT
* *
748416 GAAGATT-TTCGAGTTCTATACTCCCT-AAAGAAAGAGGGAGCGAACCTGTT--A
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCGTTGAA
* * * * *
748467 GAAGA-TGTTCGAGTTCCATACTCCCT-AGATAAAGAGGGAACAAACCCGTAAGAA
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCGT-TGAA
* *
748521 GAAGA-TGTTCGAGTTCTATACTCCCT-ACAGAAAGAGGGAGCGAACCCGTT-TA
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCGTTGAA
* * * *
748573 -AAGA-TGTTCGAGTTCCATACTCCCT-AGATAAAGAGGGAACGAACCCGTAAGAA
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCGT-TGAA
* *
748626 GAAGA-TGTTCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCATTTGCA
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCC-GTTGAA
* * * * *
748680 GAAGATTATTCGAGTTCCATACTCCCT-AGATAAAGAGGGAACGAACCTGTTTGAA
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCG-TTGAA
* * * *
748735 GAAGA-TATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAA-CCGTT--T
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCGTTGAA
* * *
748786 GAAGA-TGTTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTAAGAA
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCGT-TGAA
* *
748841 GAAGA-TGTTTGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACTCGTTTGCAA
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCG-TTG-AA
* * * * * *
748896 -ATGATTGCTCAAGTTCTATACTCCATGA-AGGAAGAGGGAACGAACCCGTTGACA
1 GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCGTTGA-A
748950 GAAG
1 GAAG
748954 GTTTTTCAAG
Statistics
Matches: 409, Mismatches: 57, Indels: 38
0.81 0.11 0.08
Matches are distributed among these distances:
50 1 0.00
51 129 0.32
52 5 0.01
53 4 0.01
54 144 0.35
55 125 0.31
56 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (55 bp):
GAAGATTGTTCGAGTTCTATACTCCCTGAGAGAAAGAGGGAGCGAACCCGTTGAA
Found at i:752625 original size:27 final size:26
Alignment explanation
Indices: 752556--752626 Score: 83
Period size: 28 Copynumber: 2.7 Consensus size: 26
752546 TAAAAAGTTA
752556 TTTTCCTTTTTCTT-TTATTTTCTCC
1 TTTTCCTTTTTCTTCTTATTTTCTCC
*
752581 TCTTTCCTTCTTTCTTCTTATTTATCTTC
1 T-TTTCCTT-TTTCTTCTTATTT-TCTCC
752610 TTTTCTCTTTTT-TTCTT
1 TTTTC-CTTTTTCTTCTT
752627 TCCTCAACCT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
25 1 0.03
26 7 0.17
27 11 0.28
28 13 0.32
29 8 0.20
ACGTcount: A:0.04, C:0.24, G:0.00, T:0.72
Consensus pattern (26 bp):
TTTTCCTTTTTCTTCTTATTTTCTCC
Found at i:753235 original size:12 final size:12
Alignment explanation
Indices: 753210--753242 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
753200 ACAATGGGAA
753210 ATTAAAAA-AAT
1 ATTAAAAATAAT
*
753221 ATTAAAAATACT
1 ATTAAAAATAAT
753233 ATTAAAAATA
1 ATTAAAAATA
753243 TTAATTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (12 bp):
ATTAAAAATAAT
Found at i:754153 original size:23 final size:24
Alignment explanation
Indices: 754122--754168 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
754112 ATTATAAAAT
*
754122 TAAATATTTTTCACAT-ATATTTTA
1 TAAATA-TTTTCACATCATAGTTTA
754146 TAAA-ATTTTCACATCATAGTTTA
1 TAAATATTTTCACATCATAGTTTA
754169 ATTAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 9 0.43
23 8 0.38
24 4 0.19
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (24 bp):
TAAATATTTTCACATCATAGTTTA
Found at i:762846 original size:31 final size:32
Alignment explanation
Indices: 762778--762848 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 32
762768 GGTTTAATAA
*
762778 TTAAAT-TTTAATTTTTAAGATCTTATTATAT
1 TTAAATATTTAATATTTAAGATCTTATTATAT
762809 TT-AATATTTAATATTT-AGAT-TTAATT-TAAT
1 TTAAATATTTAATATTTAAGATCTT-ATTAT-AT
762839 TTAAATATTT
1 TTAAATATTT
762849 TATTATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
29 3 0.09
30 14 0.40
31 18 0.51
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (32 bp):
TTAAATATTTAATATTTAAGATCTTATTATAT
Found at i:768841 original size:21 final size:21
Alignment explanation
Indices: 768815--768854 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
768805 CAGAACCCCA
*
768815 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
768836 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
768855 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:779023 original size:31 final size:31
Alignment explanation
Indices: 778956--779032 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 31
778946 AATGAATCTA
* * **
778956 TAAAGTTCAGTGAGT-AAATTAGAAAAATTG
1 TAAAGTTTAGTGAGTGAAATAAGAAAAAGGG
*
778986 -AAAGTTTAGTGAGTGAAATAAGAGAAAGGG
1 TAAAGTTTAGTGAGTGAAATAAGAAAAAGGG
779016 TAAAGTTTAGTGA-TGAA
1 TAAAGTTTAGTGAGTGAA
779033 CTATGTAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 13 0.32
30 15 0.38
31 12 0.30
ACGTcount: A:0.45, C:0.01, G:0.26, T:0.27
Consensus pattern (31 bp):
TAAAGTTTAGTGAGTGAAATAAGAAAAAGGG
Found at i:779588 original size:12 final size:12
Alignment explanation
Indices: 779571--779605 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
779561 GCTAGGGATA
779571 TTATTTTAATAT
1 TTATTTTAATAT
779583 TTATTTTAA-A-
1 TTATTTTAATAT
779593 TTATTTTAATAT
1 TTATTTTAATAT
779605 T
1 T
779606 AAATATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 9 0.43
11 2 0.10
12 10 0.48
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
TTATTTTAATAT
Found at i:779598 original size:22 final size:23
Alignment explanation
Indices: 779570--779623 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
779560 GGCTAGGGAT
* *
779570 ATTATTTTAATATT-TATTTTAA
1 ATTATTTTAATATTAAATATTAA
779592 ATTATTTTAATATTAAATATTAA
1 ATTATTTTAATATTAAATATTAA
*
779615 ATTTTTTTA
1 ATTATTTTA
779624 CATCATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
ATTATTTTAATATTAAATATTAA
Found at i:787305 original size:23 final size:23
Alignment explanation
Indices: 787279--787327 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
787269 GGGAAGAAGG
787279 TTTCTTTCCCCCTTTTTCCCTTC
1 TTTCTTTCCCCCTTTTTCCCTTC
787302 TTTCTTTCCCCCTTTTTCCCTTC
1 TTTCTTTCCCCCTTTTTCCCTTC
787325 TTT
1 TTT
787328 TCAGTGAGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTCTTTCCCCCTTTTTCCCTTC
Found at i:789567 original size:4 final size:4
Alignment explanation
Indices: 789560--789650 Score: 182
Period size: 4 Copynumber: 22.8 Consensus size: 4
789550 TATATATATA
789560 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
789608 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
789651 ATTCATATGA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 87 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:796108 original size:2 final size:2
Alignment explanation
Indices: 796101--796127 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
796091 CATCCCATAT
796101 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
796128 TGGGGACAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:796870 original size:128 final size:128
Alignment explanation
Indices: 796640--796895 Score: 494
Period size: 128 Copynumber: 2.0 Consensus size: 128
796630 ACAGATTGAG
*
796640 TTAAAATCTCGTTTCTACATGAAACAAACATCATTGGTAGCAGAAAGACAAAGAAGAACCTAAAT
1 TTAAAATCTCGTTTCTACATGAAACAAACAACATTGGTAGCAGAAAGACAAAGAAGAACCTAAAT
*
796705 AGCAGAGTCTTAGTGTTAGAGGTATAACAATCTGAGATGATACAACGAAATAATAATTAAGAA
66 AGCAGAGTCTTAGTGTTAGAGGTATAACAATCCGAGATGATACAACGAAATAATAATTAAGAA
796768 TTAAAATCTCGTTTCTACATGAAACAAACAACATTGGTAGCAGAAAGACAAAGAAGAACCTAAAT
1 TTAAAATCTCGTTTCTACATGAAACAAACAACATTGGTAGCAGAAAGACAAAGAAGAACCTAAAT
796833 AGCAGAGTCTTAGTGTTAGAGGTATAACAATCCGAGATGATACAACGAAATAATAATTAAGAA
66 AGCAGAGTCTTAGTGTTAGAGGTATAACAATCCGAGATGATACAACGAAATAATAATTAAGAA
796896 CAAAATGAAT
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 126 1.00
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (128 bp):
TTAAAATCTCGTTTCTACATGAAACAAACAACATTGGTAGCAGAAAGACAAAGAAGAACCTAAAT
AGCAGAGTCTTAGTGTTAGAGGTATAACAATCCGAGATGATACAACGAAATAATAATTAAGAA
Found at i:809298 original size:227 final size:228
Alignment explanation
Indices: 808898--809382 Score: 875
Period size: 227 Copynumber: 2.1 Consensus size: 228
808888 GTAAATTATC
* * *
808898 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
*
808963 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
809028 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
809093 AAACATAAATTACATAACTTTCAAA-AAGTATA
196 AAACATAAATTACATAACTTTCAAAGAAGTATA
*
809125 TATCA-TTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
809189 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATT
* *
809254 TTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATT
130 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
809319 GAAACATAAATTACATAACTTTCAAAGAAGTATA
195 GAAACATAAATTACATAACTTTCAAAGAAGTATA
809353 TATCATTTTTATAAAAGTGTCCATACTTAT
1 TATCATTTTTATAAAAGTGTCCATACTTAT
809383 AAAAGTAGGT
Statistics
Matches: 247, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
226 31 0.13
227 180 0.73
228 12 0.05
229 24 0.10
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (228 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTCAAAGAAGTATA
Found at i:809685 original size:20 final size:19
Alignment explanation
Indices: 809662--809708 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
809652 CGATATACCA
809662 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
809682 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
809702 GGTAAAA
1 GGTAAAA
809709 CGTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Done.