Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10075380
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 17 of 42
Found at i:3561240 original size:34 final size:34
Alignment explanation
Indices: 3561202--3561318 Score: 101
Period size: 34 Copynumber: 3.4 Consensus size: 34
3561192 ATGATAAACA
*
3561202 AACACTAAATGAATGCTAAACGAACATGTTCATG
1 AACACTAAATGAATGCTAAACGAACATGTTCACG
*** * * *
3561236 AACACATTCGTGAGCAT-ATAAACAAACATGTTCACA
1 AACAC-TAAATGA--ATGCTAAACGAACATGTTCACG
* * *
3561272 AACATTAAATGAACGCTAAACGAACATGTTCGCG
1 AACACTAAATGAATGCTAAACGAACATGTTCACG
*
3561306 AACATTAAATGAA
1 AACACTAAATGAA
3561319 CATGTTCGCG
Statistics
Matches: 63, Mismatches: 16, Indels: 8
0.72 0.18 0.09
Matches are distributed among these distances:
33 1 0.02
34 33 0.52
35 8 0.13
36 19 0.30
37 2 0.03
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (34 bp):
AACACTAAATGAATGCTAAACGAACATGTTCACG
Found at i:3561314 original size:23 final size:23
Alignment explanation
Indices: 3561288--3561342 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
3561278 AAATGAACGC
*
3561288 TAAACGAACATGTTCGCGAACAT
1 TAAATGAACATGTTCGCGAACAT
3561311 TAAATGAACATGTTCGCGAACAT
1 TAAATGAACATGTTCGCGAACAT
3561334 TAAATGAAC
1 TAAATGAAC
3561343 GAACACAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (23 bp):
TAAATGAACATGTTCGCGAACAT
Found at i:3561319 original size:34 final size:34
Alignment explanation
Indices: 3561254--3561319 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
3561244 CGTGAGCATA
3561254 TAAACAAACATGTTCACAAACATTAAATGAACGC
1 TAAACAAACATGTTCACAAACATTAAATGAACGC
* * *
3561288 TAAACGAACATGTTCGCGAACATTAAATGAAC
1 TAAACAAACATGTTCACAAACATTAAATGAAC
3561320 ATGTTCGCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.47, C:0.20, G:0.12, T:0.21
Consensus pattern (34 bp):
TAAACAAACATGTTCACAAACATTAAATGAACGC
Found at i:3561437 original size:30 final size:29
Alignment explanation
Indices: 3561334--3561442 Score: 89
Period size: 30 Copynumber: 3.7 Consensus size: 29
3561324 TCGCGAACAT
* * *
3561334 TAAATGAACGAACACAAACATCTTCAAAAA
1 TAAATAAACGAACACGAACA-CTTTAAAAA
*
3561364 TAAATAAACGAACACGAACA-TTATATTGAAA
1 TAAATAAACGAACACGAACACTT-TA--AAAA
** *
3561395 -ACTTAAATGAACACGAACACCTTTAAAAA
1 TAAATAAACGAACACGAACA-CTTTAAAAA
3561424 TAAATAAACGAACAC-AACA
1 TAAATAAACGAACACGAACA
3561443 TAACCTTATT
Statistics
Matches: 62, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
28 2 0.03
29 8 0.13
30 45 0.73
31 5 0.08
32 2 0.03
ACGTcount: A:0.56, C:0.18, G:0.07, T:0.18
Consensus pattern (29 bp):
TAAATAAACGAACACGAACACTTTAAAAA
Found at i:3561779 original size:20 final size:21
Alignment explanation
Indices: 3561754--3561796 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
3561744 TGGATTATTA
3561754 AAATGT-ACTATT-ATTTTAAG
1 AAATGTAAC-ATTAATTTTAAG
3561774 AAATGTAACATTAATTTTAAG
1 AAATGTAACATTAATTTTAAG
3561795 AA
1 AA
3561797 TTAGATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (21 bp):
AAATGTAACATTAATTTTAAG
Found at i:3561821 original size:54 final size:53
Alignment explanation
Indices: 3561714--3561823 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 53
3561704 AAGACATTTA
* * * *
3561714 TTTAAGAAATGTAACATTAACTTTATGAGTTGGATTATTAAAATGTACTATTAT
1 TTTAAGAAATGTAACATTAACTTTAAGAATTAGATTATTAAAATGTA-GATTAT
*
3561768 TTTAAGAAATGTAACATTAATTTTAAGAATTAGATTATTAGAAAATGT-GATTAT
1 TTTAAGAAATGTAACATTAACTTTAAGAATTAGATTATT--AAAATGTAGATTAT
3561822 TT
1 TT
3561824 GGCATATTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 42 0.86
56 7 0.14
ACGTcount: A:0.41, C:0.04, G:0.13, T:0.43
Consensus pattern (53 bp):
TTTAAGAAATGTAACATTAACTTTAAGAATTAGATTATTAAAATGTAGATTAT
Found at i:3563209 original size:14 final size:15
Alignment explanation
Indices: 3563068--3563215 Score: 181
Period size: 15 Copynumber: 9.5 Consensus size: 15
3563058 TAATAACGTT
3563068 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
3563083 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
3563098 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
3563113 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
3563128 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
3563143 ATTTACTTTAAAATA
1 ATTTATTTTAAAATA
* *
3563158 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
3563177 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
3563195 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
3563209 ATTTATT
1 ATTTATT
3563216 AGTATGAATT
Statistics
Matches: 116, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
14 12 0.10
15 84 0.72
16 4 0.03
17 2 0.02
18 1 0.01
19 1 0.01
20 2 0.02
21 4 0.03
22 6 0.05
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.51
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:3563232 original size:18 final size:18
Alignment explanation
Indices: 3563209--3563287 Score: 58
Period size: 18 Copynumber: 4.4 Consensus size: 18
3563199 ATTTTAAATA
3563209 ATTTATTAGTATGAATTG
1 ATTTATTAGTATGAATTG
* *
3563227 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT--AGTATGAATTG
* *
3563249 ATTTATT--T-T-AAATA
1 ATTTATTAGTATGAATTG
3563263 ATTTATTAGTATGAATTG
1 ATTTATTAGTATGAATTG
3563281 ATTTATT
1 ATTTATT
3563288 TTAAAATATG
Statistics
Matches: 46, Mismatches: 7, Indels: 16
0.67 0.10 0.23
Matches are distributed among these distances:
14 9 0.20
15 1 0.02
16 2 0.04
17 1 0.02
18 15 0.33
20 4 0.09
22 14 0.30
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.53
Consensus pattern (18 bp):
ATTTATTAGTATGAATTG
Found at i:3563234 original size:22 final size:22
Alignment explanation
Indices: 3563218--3563260 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
3563208 AATTTATTAG
3563218 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
3563240 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
3563261 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:3563234 original size:32 final size:32
Alignment explanation
Indices: 3563195--3563292 Score: 126
Period size: 32 Copynumber: 3.4 Consensus size: 32
3563185 TTTTAAAATA
3563195 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTG
3563227 ATTTATTTT-AA-AA--TA-T-G---G-ATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTG
3563249 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTG
3563281 ATTTATTTTAAA
1 ATTTATTTTAAA
3563293 ATATGGATTG
Statistics
Matches: 56, Mismatches: 0, Indels: 20
0.74 0.00 0.26
Matches are distributed among these distances:
22 13 0.23
23 3 0.05
24 2 0.04
26 3 0.05
27 2 0.04
28 3 0.05
30 2 0.04
31 3 0.05
32 25 0.45
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGAATTG
Found at i:3563260 original size:54 final size:54
Alignment explanation
Indices: 3563195--3563523 Score: 451
Period size: 54 Copynumber: 6.1 Consensus size: 54
3563185 TTTTAAAATA
3563195 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
3563249 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
* *
3563303 ATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGAATTGATTTA-TTT---TAA---A--A-TATGGATTG
*
3563361 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAATTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
*
3563415 ATTTATTTTAAATAATTTA-TAGTATGGA-TGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
*
3563467 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
3563521 ATT
1 ATT
3563524 ATTATTGTAG
Statistics
Matches: 248, Mismatches: 7, Indels: 40
0.84 0.02 0.14
Matches are distributed among these distances:
48 17 0.07
49 5 0.02
50 2 0.01
52 47 0.19
53 17 0.07
54 114 0.46
55 1 0.00
57 2 0.01
58 14 0.06
60 5 0.02
62 2 0.01
63 5 0.02
64 17 0.07
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
Found at i:3563360 original size:32 final size:32
Alignment explanation
Indices: 3563319--3563913 Score: 277
Period size: 32 Copynumber: 18.7 Consensus size: 32
3563309 TATTGTAGTT
3563319 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
3563351 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
3563383 GTATGAATTGATTTA-TTT---TAA---A-T-
1 GTATGGATTGATTTATTTTAAATAATTTATTA
3563406 -TATGGATTGATTTATTTTAAATAATTTA-TA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
3563436 GTATGGA-TGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
3563458 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
**
3563489 GTATGGATTGATTTATTTTAAA-ATATGGATT-
1 GTATGGATTGATTTATTTTAAATA-ATTTATTA
* * *
3563520 G-AT-TATT-ATTGTAGTTTTATGGATTGATTTATT-
1 GTATGGATTGATT-TA-TTTTA---AATAATTTATTA
* * * * * *
3563553 -T-T-AAATAATTTATTAGTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATT--T-T-AAATAATTTA--TT--A
*
3563590 ATATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
3563622 GTATGGA-TGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
3563644 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
3563675 GTATGAATTGATTTATTTTAAATATGGATGATTTATTA
1 GTATGGATTGATTTATTTT-AA-AT--A--ATTTATTA
* *
3563713 TTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTA
1 --GTA--TGGATTGAT----TTATTTTAAATAATTTATTA
* *
3563753 GTATGGATTGATTTATTTAAAATATGGATTGATTTA
1 GTATGGATTGATTTATTTTAAATA---ATTTA-TTA
* ** * * * * *
3563789 -TTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATT--T-T-AAATAATTTA--TT--A
*
3563828 ATATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
3563860 GTATGGATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
3563892 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
3563914 ATATGGATTG
Statistics
Matches: 439, Mismatches: 46, Indels: 156
0.68 0.07 0.24
Matches are distributed among these distances:
21 12 0.03
22 29 0.07
23 10 0.02
24 2 0.00
25 1 0.00
26 12 0.03
27 3 0.01
28 6 0.01
29 12 0.03
30 17 0.04
31 22 0.05
32 174 0.40
33 12 0.03
34 9 0.02
35 15 0.03
36 29 0.07
37 6 0.01
38 14 0.03
39 4 0.01
40 31 0.07
42 8 0.02
44 2 0.00
45 2 0.00
46 7 0.02
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:3563398 original size:18 final size:18
Alignment explanation
Indices: 3563343--3563399 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
3563333 ATTTTAAATA
*
3563343 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGAATTG
* *
3563361 ATTTATT--T-T-AAATA
1 ATTTATTAGTATGAATTG
3563375 ATTTATTAGTATGAATTG
1 ATTTATTAGTATGAATTG
3563393 ATTTATT
1 ATTTATT
3563400 TTAAATTATG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 9 0.30
15 1 0.03
16 2 0.07
17 1 0.03
18 17 0.57
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (18 bp):
ATTTATTAGTATGAATTG
Found at i:3563409 original size:22 final size:22
Alignment explanation
Indices: 3563384--3563427 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
3563374 AATTTATTAG
3563384 TATGAATTGATTTATTTTAAAT
1 TATGAATTGATTTATTTTAAAT
*
3563406 TATGGATTGATTTATTTTAAAT
1 TATGAATTGATTTATTTTAAAT
3563428 AATTTATAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAT
Found at i:3563454 original size:21 final size:22
Alignment explanation
Indices: 3563437--3563478 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
3563427 TAATTTATAG
3563437 TATGGA-TGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
3563458 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
3563479 TAATTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:3563594 original size:22 final size:22
Alignment explanation
Indices: 3563569--3563611 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
3563559 AATTTATTAG
3563569 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
3563591 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
3563612 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:3563602 original size:54 final size:54
Alignment explanation
Indices: 3563537--3563930 Score: 320
Period size: 54 Copynumber: 7.3 Consensus size: 54
3563527 ATTGTAGTTT
3563537 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
3563591 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGA-TGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
3563644 TATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
3563697 TATGGA-TGATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTTAAAA
* * * * * * *
3563743 TA---ATTTATTAGTATGGATTGATTTATTTA-AAATATGGATTGATTTATTTTAAATAATTTAT
1 TATGGATTGATT--TAT--TTTAAATAATTTATTAGTATGGATTGATTTA-TTT---TAA---A-
3563804 TA
54 -A
** ** * ** * * *
3563806 GTATGGATTGATTTATTTTAAA-ATATGGATT-G-ATTTATTTTAAATAATTTATTAG
1 -TATGGATTGATTTATTTTAAATA-ATTTATTAGTATGGA-TTGATTTATTTTA-AAA
*
3563861 TATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
3563915 TATGGATTGATTTATT
1 TATGGATTGATTTATT
3563931 ATTGTAGTTG
Statistics
Matches: 270, Mismatches: 35, Indels: 70
0.72 0.09 0.19
Matches are distributed among these distances:
43 1 0.00
44 4 0.01
46 28 0.10
47 2 0.01
48 2 0.01
50 4 0.01
52 8 0.03
53 75 0.28
54 98 0.36
55 11 0.04
56 3 0.01
57 2 0.01
58 1 0.00
59 2 0.01
61 1 0.00
62 5 0.02
63 12 0.04
64 2 0.01
65 3 0.01
67 6 0.02
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (54 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:3563647 original size:21 final size:22
Alignment explanation
Indices: 3563623--3563664 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
3563613 AATTTATTAG
3563623 TATGGA-TGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
3563644 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
3563665 TAATTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:3563659 original size:133 final size:131
Alignment explanation
Indices: 3563405--3563655 Score: 477
Period size: 133 Copynumber: 1.9 Consensus size: 131
3563395 TTATTTTAAA
3563405 TTATGGATTGATTTATTTTAAATAATTTATAGTATGGATGATTTATTTTAAAATATGGATTGATT
1 TTATGGATTGATTTATTTTAAATAATTTATAGTATGGATGATTTATTTTAAAATATGGATTGATT
3563470 TATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTATTATTGTAGT
66 TATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTATTATTGTAGT
3563535 T
131 T
3563536 TTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
1 TTATGGATTGATTTATTTTAAATAATTTA-TAGTATGGA-TGATTTATTTTAAAATATGGATTGA
3563601 TTTATTTTAAATAATTTATTAGTATGGA-TGATTTATTTTAAAATATGGATTGATT
64 TTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATT
3563656 TATTTTAAAT
Statistics
Matches: 118, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
131 29 0.25
132 36 0.31
133 53 0.45
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (131 bp):
TTATGGATTGATTTATTTTAAATAATTTATAGTATGGATGATTTATTTTAAAATATGGATTGATT
TATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTATTATTGTAGT
T
Found at i:3563780 original size:21 final size:21
Alignment explanation
Indices: 3563754--3563797 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
3563744 AATTTATTAG
3563754 TATGGATTGATTTATTTAAAA
1 TATGGATTGATTTATTTAAAA
*
3563775 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTAAAA
3563796 TA
1 TA
3563798 ATTTATTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (21 bp):
TATGGATTGATTTATTTAAAA
Found at i:3563832 original size:22 final size:22
Alignment explanation
Indices: 3563807--3563849 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
3563797 AATTTATTAG
3563807 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
3563829 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
3563850 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:3563882 original size:185 final size:185
Alignment explanation
Indices: 3563351--3563883 Score: 982
Period size: 185 Copynumber: 2.9 Consensus size: 185
3563341 TAATTTATTA
* *
3563351 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAATTATGGATTGA
1 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
3563416 TTTATTTTAAATAATTTA-TAGTATGGATGATTTATTTTAAAATATGGATTGATTTATTTTAAAT
66 TTTATTTTAAATAATTTATTAGTATGGATGATTTATTTTAAAATATGGATTGATTTATTTTAAAT
3563480 AATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTATTATTGTAGTT
131 AATTTATTAGTATGGATTGATTTATTTT-AAATATGGATTGATTATTATTGTAGTT
*
3563536 TTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
1 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
3563601 TTTATTTTAAATAATTTATTAGTATGGATGATTTATTTTAAAATATGGATTGATTTATTTTAAAT
66 TTTATTTTAAATAATTTATTAGTATGGATGATTTATTTTAAAATATGGATTGATTTATTTTAAAT
*
3563666 AATTTATTAGTATGAATTGATTTATTTTAAATATGGA-TGATTTATTATTGTAGTT
131 AATTTATTAGTATGGATTGATTTATTTTAAATATGGATTGA-TTATTATTGTAGTT
3563721 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTTAAAATATGGATTGA
1 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
3563785 TTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAA
66 TTTATTTTAAATAATTTATTAGTATGGA-TGATTTATTTTAAAATATGGATTGATTTATTTTAAA
3563850 TAATTTATTAGTATGGATTGATTTATTTTAAATA
130 TAATTTATTAGTATGGATTGATTTATTTTAAATA
3563884 ATTTATTTGT
Statistics
Matches: 339, Mismatches: 6, Indels: 6
0.97 0.02 0.02
Matches are distributed among these distances:
184 48 0.14
185 218 0.64
186 73 0.22
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (185 bp):
GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
TTTATTTTAAATAATTTATTAGTATGGATGATTTATTTTAAAATATGGATTGATTTATTTTAAAT
AATTTATTAGTATGGATTGATTTATTTTAAATATGGATTGATTATTATTGTAGTT
Found at i:3563981 original size:32 final size:32
Alignment explanation
Indices: 3563940--3564047 Score: 128
Period size: 32 Copynumber: 3.7 Consensus size: 32
3563930 TATTGTAGTT
3563940 GTATGAATTGATTTATTTTAAATAATTTATTA
1 GTATGAATTGATTTATTTTAAATAATTTATTA
3563972 GTATGAATTGATTTATTTT-AA-AA--TA-T-
1 GTATGAATTGATTTATTTTAAATAATTTATTA
3563998 G---G-ATTGATTTATTTTAAATAATTTATTA
1 GTATGAATTGATTTATTTTAAATAATTTATTA
**
3564026 GTATGGGTTGATTTATTTTAAA
1 GTATGAATTGATTTATTTTAAA
3564048 ATATGGATTG
Statistics
Matches: 65, Mismatches: 1, Indels: 20
0.76 0.01 0.23
Matches are distributed among these distances:
22 13 0.20
23 3 0.05
24 2 0.03
26 3 0.05
27 2 0.03
28 3 0.05
30 2 0.03
31 3 0.05
32 34 0.52
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (32 bp):
GTATGAATTGATTTATTTTAAATAATTTATTA
Found at i:3563985 original size:18 final size:17
Alignment explanation
Indices: 3563938--3563988 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 17
3563928 ATTATTGTAG
3563938 TTGTATGAATTGATTTA
1 TTGTATGAATTGATTTA
* *
3563955 TT-T-T-AAATAATTTA
1 TTGTATGAATTGATTTA
3563969 TTAGTATGAATTGATTTA
1 TT-GTATGAATTGATTTA
3563987 TT
1 TT
3563989 TTAAAATATG
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
14 10 0.38
15 1 0.04
16 2 0.08
17 3 0.12
18 10 0.38
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (17 bp):
TTGTATGAATTGATTTA
Found at i:3563998 original size:22 final size:22
Alignment explanation
Indices: 3563973--3564015 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
3563963 AATTTATTAG
3563973 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
3563995 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
3564016 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:3564012 original size:54 final size:54
Alignment explanation
Indices: 3563722--3564079 Score: 483
Period size: 54 Copynumber: 6.6 Consensus size: 54
3563712 ATTGTAGTTG
3563722 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
3563775 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
3563829 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
* * * ** * * * ***
3563882 TA---ATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
1 TATGGATTGATTTATTTTAAATAATTTA--TT--AGTATGGATTGATTTA-T-TT-TA-AAA
* *
3563941 TATGAATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
3563995 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGGTTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
3564049 TATGGATTGATTTATTTTAAATAATTTATTA
1 TATGGATTGATTTATTTTAAATAATTTATTA
3564080 TTGTAGTTGT
Statistics
Matches: 266, Mismatches: 26, Indels: 25
0.84 0.08 0.08
Matches are distributed among these distances:
50 16 0.06
52 2 0.01
53 51 0.19
54 154 0.58
55 3 0.01
56 4 0.02
57 2 0.01
58 14 0.05
59 2 0.01
60 2 0.01
62 16 0.06
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (54 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:3564052 original size:22 final size:22
Alignment explanation
Indices: 3564027--3564069 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
3564017 AATTTATTAG
*
3564027 TATGGGTTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
3564049 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
3564070 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:3564129 original size:31 final size:31
Alignment explanation
Indices: 3564094--3564152 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
3564084 AGTTGTATGG
* * *
3564094 ATTATTTAAATTTTAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
3564125 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
3564153 CTTTTAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:3566027 original size:36 final size:36
Alignment explanation
Indices: 3565980--3566051 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
3565970 ACCAGACGAT
3565980 ATGTTGTAGAATCCATAATCAATTTCCCTGTTAAAA
1 ATGTTGTAGAATCCATAATCAATTTCCCTGTTAAAA
3566016 ATGTTGTAGAATCCATAATCAATTTCCCTGTTAAAA
1 ATGTTGTAGAATCCATAATCAATTTCCCTGTTAAAA
3566052 GAAAAGGACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (36 bp):
ATGTTGTAGAATCCATAATCAATTTCCCTGTTAAAA
Found at i:3570553 original size:31 final size:31
Alignment explanation
Indices: 3570479--3570545 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
3570469 CAGTTACGTC
*
3570479 GGGGACCATATTGCAAACAGACTAAATGTTG
1 GGGGACCATATTGCAAACAGACTAAATGTTA
**
3570510 GGGGACCATATTGCAAATGGACTAAATGTTA
1 GGGGACCATATTGCAAACAGACTAAATGTTA
3570541 GGGGA
1 GGGGA
3570546 TTGTATTGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.22
Consensus pattern (31 bp):
GGGGACCATATTGCAAACAGACTAAATGTTA
Found at i:3571541 original size:31 final size:30
Alignment explanation
Indices: 3571499--3571561 Score: 99
Period size: 31 Copynumber: 2.1 Consensus size: 30
3571489 TAGTTACGTC
* *
3571499 GGGAACCATATTGCAAACGAGCTAAATGTT
1 GGGAACCATATTACAAACGAACTAAATGTT
3571529 GGGAGACCATATTACAAACGAACTAAATGTT
1 GGGA-ACCATATTACAAACGAACTAAATGTT
3571560 GG
1 GG
3571562 AGGATTGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (30 bp):
GGGAACCATATTACAAACGAACTAAATGTT
Found at i:3571854 original size:31 final size:32
Alignment explanation
Indices: 3571819--3571887 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 32
3571809 AATTAATAGA
*
3571819 ATTTATGAC-ATG-ATAGTTGATATAATCACAT
1 ATTTA-GACTATGTATAGTTGATATAATCACAC
*
3571850 ATTTAGTCTATGTTATAGTTGATATAATCACAC
1 ATTTAGACTATG-TATAGTTGATATAATCACAC
3571883 ATTTA
1 ATTTA
3571888 ATCCATGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 2 0.06
31 8 0.24
33 23 0.70
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (32 bp):
ATTTAGACTATGTATAGTTGATATAATCACAC
Found at i:3571868 original size:33 final size:33
Alignment explanation
Indices: 3571831--3571898 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
3571821 TTATGACATG
* * *
3571831 ATAGTTGATATAATCACATATTTAGTCTATGTT
1 ATAGTTGATATAATCACACATTTAATCCATGTT
3571864 ATAGTTGATATAATCACACATTTAATCCATGTT
1 ATAGTTGATATAATCACACATTTAATCCATGTT
3571897 AT
1 AT
3571899 TTACATATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (33 bp):
ATAGTTGATATAATCACACATTTAATCCATGTT
Found at i:3571979 original size:31 final size:31
Alignment explanation
Indices: 3571922--3571983 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
3571912 CAATTTAGAC
* * *
3571922 ATATTTTTAAATAAATTTTAACATAAAATAT
1 ATATTTTTAAATAAATATAAAAATAAAATAT
3571953 ATATTTTTAAATGAAA-ATAAAAATAAAATAT
1 ATATTTTTAAAT-AAATATAAAAATAAAATAT
3571984 TTTTAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 24 0.89
32 3 0.11
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (31 bp):
ATATTTTTAAATAAATATAAAAATAAAATAT
Found at i:3572004 original size:27 final size:27
Alignment explanation
Indices: 3571953--3572040 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
3571943 CATAAAATAT
* ** *
3571953 ATATTTTTAAATGAAAATAAAAATAAA
1 ATATTTTTAAATTAAGTTAATAATAAA
3571980 ATATTTTTAAATTAAGTTAATAATAAA
1 ATATTTTTAAATTAAGTTAATAATAAA
** *
3572007 GCATATTT-AA-TAAGTTAAT-ATAGAA
1 ATATTTTTAAATTAAGTTAATAATA-AA
3572032 GATATTTTT
1 -ATATTTTT
3572041 TAAGTTAATA
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
24 3 0.06
25 11 0.22
26 7 0.14
27 28 0.57
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (27 bp):
ATATTTTTAAATTAAGTTAATAATAAA
Found at i:3572044 original size:24 final size:24
Alignment explanation
Indices: 3571990--3572051 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 24
3571980 ATATTTTTAA
3571990 ATTAAGTTAATAATAAAGCATATTT
1 ATTAAGTTAAT-ATAAAGCATATTT
*
3572015 AATAAGTTAATATAGAAG-ATATTT
1 ATTAAGTTAATATA-AAGCATATTT
*
3572039 TTTAAGTTAATAT
1 ATTAAGTTAATAT
3572052 GTAAAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 20 0.61
25 13 0.39
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.42
Consensus pattern (24 bp):
ATTAAGTTAATATAAAGCATATTT
Found at i:3572211 original size:15 final size:15
Alignment explanation
Indices: 3572191--3572221 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3572181 AGTTTTAATT
*
3572191 TTTTTTTTGTTTCAA
1 TTTTTTTTCTTTCAA
3572206 TTTTTTTTCTTTCAA
1 TTTTTTTTCTTTCAA
3572221 T
1 T
3572222 CAGAGGAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.10, G:0.03, T:0.74
Consensus pattern (15 bp):
TTTTTTTTCTTTCAA
Found at i:3577613 original size:67 final size:69
Alignment explanation
Indices: 3577490--3577618 Score: 160
Period size: 67 Copynumber: 1.9 Consensus size: 69
3577480 ACTAGGTCCT
* *
3577490 AATTTCAATTTAATTTAATAAATTAATTTCTCCAATCAAATTGTGACACATTTCACCTTTTGCAT
1 AATTTCAATTTAATTTAATAAATT-ATTTCTCCAATCAAATAGTGACACATGTCACCTTTTGCAT
3577555 AGTGC
65 AGTGC
*
3577560 AATTT-AA-TTAATTTAAT-AATT-TTTCAATCCAATCAAA-AGATGATACATGTCACCTTTTG
1 AATTTCAATTTAATTTAATAAATTATTTC--TCCAATCAAATAG-TGACACATGTCACCTTTTG
3577619 AATTGAAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
65 4 0.08
66 1 0.02
67 31 0.58
68 10 0.19
69 2 0.04
70 5 0.09
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (69 bp):
AATTTCAATTTAATTTAATAAATTATTTCTCCAATCAAATAGTGACACATGTCACCTTTTGCATA
GTGC
Found at i:3577919 original size:4 final size:4
Alignment explanation
Indices: 3577912--3577950 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
3577902 TATAATGATT
3577912 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
3577951 TATATATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:3578776 original size:30 final size:29
Alignment explanation
Indices: 3578698--3578776 Score: 74
Period size: 30 Copynumber: 2.7 Consensus size: 29
3578688 TATTTCTATC
3578698 ATTAACTATAA-TATATAATATATAAAAAT
1 ATTAACTATAATTATA-AATATATAAAAAT
* *
3578727 ATTTTAA-T-TGATTCCTAAATATATAAAAAT
1 A--TTAACTATAATT-ATAAATATATAAAAAT
3578757 ATTAACTATAATCTATAAAT
1 ATTAACTATAAT-TATAAAT
3578777 TTAATGCATG
Statistics
Matches: 39, Mismatches: 4, Indels: 13
0.70 0.07 0.23
Matches are distributed among these distances:
28 4 0.10
29 4 0.10
30 24 0.62
31 7 0.18
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.41
Consensus pattern (29 bp):
ATTAACTATAATTATAAATATATAAAAAT
Found at i:3579800 original size:20 final size:22
Alignment explanation
Indices: 3579775--3579818 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
3579765 CACCCGCAAC
3579775 ATCCATCCACCCAT-TA-ATAT
1 ATCCATCCACCCATATATATAT
*
3579795 ATCCATCCAGCCATATATATAT
1 ATCCATCCACCCATATATATAT
3579817 AT
1 AT
3579819 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.62
21 2 0.10
22 6 0.29
ACGTcount: A:0.36, C:0.30, G:0.02, T:0.32
Consensus pattern (22 bp):
ATCCATCCACCCATATATATAT
Found at i:3579812 original size:2 final size:2
Alignment explanation
Indices: 3579807--3579845 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
3579797 CCATCCAGCC
3579807 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3579846 TAAAAAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:3580191 original size:17 final size:17
Alignment explanation
Indices: 3580142--3580191 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
3580132 TTGTTCATGT
*
3580142 TTTGGTTTCTATGAATG
1 TTTGATTTCTATGAATG
* *
3580159 TTTGA---GTATCAATG
1 TTTGATTTCTATGAATG
3580173 TTTGATTTCTATGAATG
1 TTTGATTTCTATGAATG
3580190 TT
1 TT
3580192 AGAAGAATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 6
0.69 0.14 0.17
Matches are distributed among these distances:
14 12 0.48
17 13 0.52
ACGTcount: A:0.22, C:0.06, G:0.20, T:0.52
Consensus pattern (17 bp):
TTTGATTTCTATGAATG
Found at i:3583592 original size:15 final size:15
Alignment explanation
Indices: 3583574--3583603 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3583564 AAAACCATGT
3583574 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
3583589 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
3583604 GAAATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGATAAAAAGGTAA
Found at i:3583610 original size:15 final size:15
Alignment explanation
Indices: 3583577--3583611 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
3583567 ACCATGTTAG
* *
3583577 ATAAAAAGGTAATAG
1 ATAAAAAGGTAAGAA
3583592 ATAAAAAGGTAAGAA
1 ATAAAAAGGTAAGAA
3583607 ATAAA
1 ATAAA
3583612 TAAATTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAAAAGGTAAGAA
Found at i:3583675 original size:30 final size:31
Alignment explanation
Indices: 3583618--3583680 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
3583608 TAAATAAATT
*
3583618 AATTAAATTAAAATAAAATAAAGAGAAAACA
1 AATTAAATAAAAATAAAATAAAGAGAAAACA
*
3583649 AATTAAATAAAAGATAAGAT-AA-AGAAAACA
1 AATTAAATAAAA-ATAAAATAAAGAGAAAACA
3583679 AA
1 AA
3583681 GATAAAATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 10 0.34
31 13 0.45
32 6 0.21
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.17
Consensus pattern (31 bp):
AATTAAATAAAAATAAAATAAAGAGAAAACA
Found at i:3583734 original size:15 final size:15
Alignment explanation
Indices: 3583714--3583746 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
3583704 TATAAAAAAT
*
3583714 AAAGAAAAAGAAGAA
1 AAAGAAAAAAAAGAA
3583729 AAAGAAAAAAAAGAA
1 AAAGAAAAAAAAGAA
3583744 AAA
1 AAA
3583747 AATATAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAGAA
Found at i:3583761 original size:25 final size:24
Alignment explanation
Indices: 3583699--3583826 Score: 86
Period size: 25 Copynumber: 5.1 Consensus size: 24
3583689 AGTAAGTAAA
*
3583699 ATAAATATAAAAAATAAAGAAAAAGAAG
1 ATAAA-AT-AAAAA-AAAGAAAAA-AAT
*
3583727 A-AAAAGAAAAAAAAGAAAAAAAT
1 ATAAAATAAAAAAAAGAAAAAAAT
* *
3583750 ATAGAAATAAAACAAATAAATAAAA-
1 ATA-AAATAAAAAAAAGAAA-AAAAT
3583775 AT--AAT-AAAAAAAGTAAAAATATAT
1 ATAAAATAAAAAAAAG-AAAAA-A-AT
*
3583799 ATAAAATAAAAAAATAAAAAAAAAT
1 ATAAAATAAAAAAA-AGAAAAAAAT
3583824 ATA
1 ATA
3583827 TTATAATATA
Statistics
Matches: 81, Mismatches: 8, Indels: 25
0.71 0.07 0.22
Matches are distributed among these distances:
21 8 0.10
22 7 0.09
23 4 0.05
24 12 0.15
25 25 0.31
26 9 0.11
27 14 0.17
28 2 0.02
ACGTcount: A:0.78, C:0.01, G:0.05, T:0.16
Consensus pattern (24 bp):
ATAAAATAAAAAAAAGAAAAAAAT
Found at i:3583775 original size:37 final size:36
Alignment explanation
Indices: 3583733--3583848 Score: 89
Period size: 36 Copynumber: 3.2 Consensus size: 36
3583723 GAAGAAAAAG
*
3583733 AAAAAAAAGAAAAAAATATAGAAATA-A-A-ACAAATA
1 AAAAAAAAAAAAAAAATATA-AAATATATATA-AAATA
3583768 AATAAAAATAATAAAAAAAGTA-AAAATATATATAAAATA
1 AA-AAAAA-AA-AAAAAAA-TATAAAATATATATAAAATA
* **
3583807 AAAAAATAAAAAAAAATATATTATA-ATATATAAATA
1 AAAAAAAAAAAAAAAATATAAAATATATATA-AAATA
*
3583843 ATAAAA
1 AAAAAA
3583849 CTGATAATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 17
0.75 0.06 0.19
Matches are distributed among these distances:
35 9 0.13
36 26 0.39
37 8 0.12
38 13 0.19
39 10 0.15
40 1 0.01
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.21
Consensus pattern (36 bp):
AAAAAAAAAAAAAAAATATAAAATATATATAAAATA
Found at i:3583799 original size:47 final size:46
Alignment explanation
Indices: 3583696--3583824 Score: 131
Period size: 47 Copynumber: 2.8 Consensus size: 46
3583686 AATAGTAAGT
* * *
3583696 AAAATAAATATAAAAAATAAAGAAAA-AGAAGAAAAA-GA-AAAAAAAG
1 AAAA-AAATATATAAAATAAA-AAAATA-AAAAAAAATAATAAAAAAAG
* *
3583742 AAAAAAATATA-GAAATAAAACAAATAAATAAAAATAATAAAAAAAG
1 AAAAAAATATATAAAATAAAA-AAATAAAAAAAAATAATAAAAAAAG
*
3583788 TAAAAATATATATAAAATAAAAAAATAAAAAAAAATA
1 -AAAAAAATATATAAAATAAAAAAATAAAAAAAAATA
3583825 TATTATAATA
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 17 0.24
45 9 0.13
46 12 0.17
47 24 0.34
48 8 0.11
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (46 bp):
AAAAAAATATATAAAATAAAAAAATAAAAAAAAATAATAAAAAAAG
Found at i:3583804 original size:30 final size:31
Alignment explanation
Indices: 3583769--3583832 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
3583759 AAACAAATAA
**
3583769 ATAAAAATAATAAAAA-AAGTAAAAATATA-T
1 ATAAAAATAA-AAAAATAAAAAAAAATATATT
3583799 AT-AAAATAAAAAAATAAAAAAAAATATATT
1 ATAAAAATAAAAAAATAAAAAAAAATATATT
3583829 ATAA
1 ATAA
3583833 TATATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 5 0.17
29 18 0.62
30 5 0.17
31 1 0.03
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (31 bp):
ATAAAAATAAAAAAATAAAAAAAAATATATT
Found at i:3583806 original size:35 final size:32
Alignment explanation
Indices: 3583767--3583848 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 32
3583757 TAAAACAAAT
3583767 AAATAAAAATAATAAAAAAAGTAAAAATATATATA
1 AAATAAAAATAATAAAAAAA--AAAAATAT-TATA
*
3583802 AAATAAAAA-AAT-AAAAAAAAATATATTATA
1 AAATAAAAATAATAAAAAAAAAAAATATTATA
* *
3583832 ATATATAAATAATAAAA
1 AAATAAAAATAATAAAA
3583849 CTGATAATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
30 11 0.26
31 10 0.24
32 3 0.07
33 6 0.14
34 3 0.07
35 9 0.21
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.24
Consensus pattern (32 bp):
AAATAAAAATAATAAAAAAAAAAAATATTATA
Found at i:3583821 original size:9 final size:9
Alignment explanation
Indices: 3583695--3583821 Score: 80
Period size: 9 Copynumber: 14.0 Consensus size: 9
3583685 AAATAGTAAG
*
3583695 TAAAATAAA
1 TAAAAAAAA
*
3583704 TATAAAAAA
1 TAAAAAAAA
3583713 TAAAGAAAAA
1 TAAA-AAAAA
* *
3583723 GAAGAAAAA
1 TAAAAAAAA
*
3583732 GAAAAAAAA
1 TAAAAAAAA
*
3583741 GAAAAAAATA
1 TAAAAAAA-A
3583751 TAGAAATAAAA
1 TA-AAA-AAAA
* *
3583762 -CAAATAAA
1 TAAAAAAAA
*
3583770 TAAAAATAA
1 TAAAAAAAA
*
3583779 TAAAAAAAG
1 TAAAAAAAA
*
3583788 T-AAAAATA
1 TAAAAAAAA
* *
3583796 TATATAAAA
1 TAAAAAAAA
3583805 T-AAAAAAA
1 TAAAAAAAA
3583813 TAAAAAAAA
1 TAAAAAAAA
3583822 ATATATTATA
Statistics
Matches: 90, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
8 15 0.17
9 59 0.66
10 9 0.10
11 4 0.04
12 3 0.03
ACGTcount: A:0.79, C:0.01, G:0.06, T:0.15
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:3583832 original size:25 final size:25
Alignment explanation
Indices: 3583701--3583826 Score: 95
Period size: 26 Copynumber: 5.0 Consensus size: 25
3583691 TAAGTAAAAT
*
3583701 AAATATAAAAAATAAAGAAAAAGA-AGA
1 AAATA-AAAAAATAAA-AAAAA-ATATA
3583728 AAA-AGAAAAAA-AAGAAAAAAATATA
1 AAATA-AAAAAATAA-AAAAAAATATA
*
3583753 GAAATAAAACAAAT-AAATAAAA-AT-
1 -AAATAAAA-AAATAAAAAAAAATATA
* *
3583777 -AATAAAAAAAGTAAAAATATATATA
1 AAATAAAAAAA-TAAAAAAAAATATA
3583802 AAATAAAAAAATAAAAAAAAATATA
1 AAATAAAAAAATAAAAAAAAATATA
3583827 TTATAATATA
Statistics
Matches: 80, Mismatches: 8, Indels: 24
0.71 0.07 0.21
Matches are distributed among these distances:
21 3 0.04
22 8 0.10
23 5 0.06
24 3 0.04
25 23 0.29
26 30 0.38
27 8 0.10
ACGTcount: A:0.79, C:0.01, G:0.06, T:0.15
Consensus pattern (25 bp):
AAATAAAAAAATAAAAAAAAATATA
Found at i:3583835 original size:39 final size:40
Alignment explanation
Indices: 3583792--3583897 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 40
3583782 AAAAAGTAAA
3583792 AATATATATAAAATAAAAA-AATAAAAAAAAATATA-TTAT
1 AATATATA-AAAATAAAAATAATAAAAAAAAATATATTTAT
*
3583831 AATATATAAATAATAAAACTGATAATAAAAAATAATATATTTAT
1 AATATATAAA-AATAAAA---ATAATAAAAAAAAATATATTTAT
*
3583875 ATATAATCTAAAAAATAAAAATA
1 A-AT-ATAT-AAAAATAAAAATA
3583898 TATACTAAAG
Statistics
Matches: 56, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
38 2 0.04
39 15 0.27
42 1 0.02
43 18 0.32
44 5 0.09
45 2 0.04
46 10 0.18
47 3 0.05
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.30
Consensus pattern (40 bp):
AATATATAAAAATAAAAATAATAAAAAAAAATATATTTAT
Found at i:3583899 original size:24 final size:23
Alignment explanation
Indices: 3583872--3583941 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 23
3583862 ATAATATATT
*
3583872 TATATATAATCTAAAAAATAAAAA
1 TATATATAATGTAAAAAA-AAAAA
* *
3583896 TATATACTAAAGTAAAAAAGAAAA
1 TATATA-TAATGTAAAAAAAAAAA
* *
3583920 TACATAAAATGTAAAAAAAAAA
1 TATATATAATGTAAAAAAAAAA
3583942 TATTACATGA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 13 0.34
24 15 0.39
25 10 0.26
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (23 bp):
TATATATAATGTAAAAAAAAAAA
Found at i:3583948 original size:25 final size:24
Alignment explanation
Indices: 3583885--3583954 Score: 67
Period size: 23 Copynumber: 2.9 Consensus size: 24
3583875 ATATAATCTA
3583885 AAAAATAAAAATATATAC-T-AAAGT
1 AAAAA-AAAAATAT-TACATAAAAGT
*
3583909 AAAAAAGAAA-A-TACATAAAATGT
1 AAAAAAAAAATATTACATAAAA-GT
3583932 AAAAAAAAAATATTACATGAAAA
1 AAAAAAAAAATATTACAT-AAAA
3583955 AAAAAGAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 3 0.08
21 1 0.03
22 4 0.11
23 15 0.39
24 6 0.16
25 5 0.13
26 4 0.11
ACGTcount: A:0.70, C:0.04, G:0.06, T:0.20
Consensus pattern (24 bp):
AAAAAAAAAATATTACATAAAAGT
Found at i:3584307 original size:33 final size:34
Alignment explanation
Indices: 3584269--3584344 Score: 88
Period size: 33 Copynumber: 2.3 Consensus size: 34
3584259 TCCTATTTTT
3584269 TGAATCCTAGCAAAAT-TAT-C-ATATTTAGGAGTG
1 TGAATCCTA--AAAATCTATCCTATATTTAGGAGTG
* *
3584302 TGAATCCT-AAAATCTATCCTATTTTTAGGAGTT
1 TGAATCCTAAAAATCTATCCTATATTTAGGAGTG
3584335 TGAATCCTAA
1 TGAATCCTAA
3584345 TAGGACGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
30 5 0.14
31 3 0.08
32 1 0.03
33 27 0.73
34 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (34 bp):
TGAATCCTAAAAATCTATCCTATATTTAGGAGTG
Found at i:3585208 original size:107 final size:104
Alignment explanation
Indices: 3584800--3585860 Score: 878
Period size: 104 Copynumber: 10.3 Consensus size: 104
3584790 AATATTGTTC
* * * * *
3584800 CGAGTCTAATATCCTCCG-CTGTGAAGTTGAAATTGGTTCTGGAACTGGGAAA-TGTTTGTTGAC
1 CGAGTCCAATATCCTTCGTC-GTGAAGTTGAAATTGGCTCTGAAACT-GAAAATTG-TTGTTGAC
** *
3584863 AGTCAGCCG-CCCTTCGCTGTGAAGTTG-A---GTGTATG-C-
63 AACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGT-TGTCT
* * * *
3584899 CGAGTCTAATATCCTTCG-CTGTTGAAGATGAAATTGACTCTG-AAC-G-AAA-TCTTGTTGACA
1 CGAGTCCAATATCCTTCGTC-G-TGAAGTTGAAATTGGCTCTGAAACTGAAAATTGTTGTTGACA
* *
3584959 ATCAGTCGTCCCTTCGTTGTGAAGTTGAAC-T-TGTTGTCT
64 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * *
3584998 CGAGTCCAATATCCTTCG-CTGCGAAGTTGAAATTGGCTCTGAAATTGAAAAAATGTTTGTTGAC
1 CGAGTCCAATATCCTTCGTC-GTGAAGTTGAAATTGGCTCTGAAACTG-AAAATTG-TTGTTGAC
3585062 AACCAGCCGTCCCTTCGTTGTGAAGTTGAAC-TGTGTTGTCT
63 AACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * **
3585103 CGAGTGGCACGATATCCTCCGTCGTGGAGTT-AAAATCGCGGATGAAACTGAAAAGTTGTTCGTT
1 CGAGT--C-CAATATCCTTCGTCGTGAAGTTGAAATTGGC-TCTGAAACTGAAAA-TTGTT-GTT
3585167 GACAACCAG-CGTCCCTTCGTTGTGAAGTTGAACTTG-GTTGTCT
60 GACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * * *
3585210 CGGGTAGCACGATATCC-TCTGTCGTGGAG-TGAAATCGGCTCTGGAATTGGGAAATTGTTTGTT
1 CGAGT--C-CAATATCCTTC-GTCGTGAAGTTGAAATTGGCTCTGAAACT-GAAAATTG-TTGTT
* *
3585273 GACAACCAACCGTCCCTTCGCTGTGAAGTTGAAC-TGTGTTGTCT
60 GACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* *
3585317 CGAGTCCAATATCCTTCG-CTGTGAAGTTGAGATTGGCTC-----C-G-AAA-TGCTTGTCGACA
1 CGAGTCCAATATCCTTCGTC-GTGAAGTTGAAATTGGCTCTGAAACTGAAAATTG-TTGTTGACA
** * * * *
3585373 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
64 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * *
3585414 TGGGTCCAATATCCTTCGT-GTGAAGTTGACATTGGCCCTGAAACT-AGAAATTATTGTTGACAA
1 CGAGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAAACTGA-AAATTGTTGTTGACAA
*
3585477 ACAGCCGTCCC-TCGTTGTGAAGTTGAACTTGTGTTGTCT
65 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * *
3585516 GGAGTCC-A-ATCCTTCGTTGTGAAGTTGAAATTGGCTTTGAGA-TGGGAAGTTGTTGTTGACAA
1 CGAGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAAACT-GAAAATTGTTGTTGACAA
* * * *
3585578 TCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
65 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * *
3585618 -GAAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAA-TGAGAATTTATTGTTGACA
1 CG-AGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAAACTGA-AAATTGTTGTTGACA
* * * * *
3585681 AGCAGCGGTCCATTCGTCGTGAAGTTGAACTTGCGTTGTCT
64 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * *
3585722 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG-TCTGAAATTGAGAAGTTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAAACTGA-AAATTG-TTGTTGACA
*
3585786 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGCG-TGTCT
64 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* *
3585826 CGAGTGCCACAATATCCTCCG-CGTGGAGTTGAAAT
1 CGAGT--C-CAATATCCTTCGTCGTGAAGTTGAAAT
3585861 CGCGGATGGC
Statistics
Matches: 811, Mismatches: 95, Indels: 105
0.80 0.09 0.10
Matches are distributed among these distances:
95 15 0.02
96 73 0.09
97 32 0.04
98 22 0.03
99 45 0.06
100 28 0.03
101 46 0.06
102 64 0.08
103 31 0.04
104 188 0.23
105 67 0.08
106 36 0.04
107 124 0.15
108 39 0.05
109 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (104 bp):
CGAGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAAACTGAAAATTGTTGTTGACAAC
CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
Found at i:3585645 original size:301 final size:309
Alignment explanation
Indices: 3584950--3585862 Score: 831
Period size: 301 Copynumber: 2.9 Consensus size: 309
3584940 GAACGAAATC
* ** * *
3584950 TTGTTGACAATCAGTCGTCCCTTCGTTGTGAAGTTGAACT-TGTTGTCTCGAGTCCAATATCCTT
1 TTGTTGACAACCAACCGTCCCTTCGCTGTGAAGTTGAACTGCGTTGTCTCGAGTCCAATATCCTT
* * * *
3585014 CGCTGCGAAGTTGAAATTGGCTCTGAAATTGAAAAAATGT-TTGTTGACAACCAGCCGTCCC-TT
66 CGCTGTGAAGTTGAAATTGGCTCCGAAA-T------A-GTATTGTCGACAAGCAGCCG-CCCATT
* * * * * * * * * *
3585077 CGTTGTGAAGTTGAAC-TGTGTTGTCTCGAGTGGCACGATATCCTCCGTCGTGGAGTTAAAATCG
122 CGTCGTGAAGTTGAACTTGCGCTGTCTGGAGT--C-CAATATCCTTCGTTGTGAAGTTGAAATTG
**
3585141 CGGATGAAACTGA-AAAGTTG-TTCGTTGACAACCAG-CGTCCCTTCGTTGTGAAGTTGAACTTG
184 -GCCTGAAACTGAGAAA-TTGATT-GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTG
*
3585203 GTTGTCTCGGGTAGCACGATATCCTCTGTCGTGGAGTGAAATCGGCTCTGGAATTGGGAAATTGT
246 GTTGTCTCGGGTA-CACGATATCCTCTGTCGTGAAGTGAAATCGGCTCTGGAATTGGGAAATTGT
*
3585268 TTGTTGACAACCAACCGTCCCTTCGCTGTGAAGTTGAACTGTGTTGTCTCGAGTCCAATATCCTT
1 TTGTTGACAACCAACCGTCCCTTCGCTGTGAAGTTGAACTGCGTTGTCTCGAGTCCAATATCCTT
* * *
3585333 CGCTGTGAAGTTGAGATTGGCTCCGAAAT-G-CTTGTCGAC-AGTCAGCCGCCCCTTCG-CTGTG
66 CGCTGTGAAGTTGAAATTGGCTCCGAAATAGTATTGTCGACAAG-CAGCCGCCCATTCGTC-GTG
* * *
3585394 AAGTTGAGCTTGTGCTGTCTTGG-GTCCAATATCCTTCG-TGTGAAGTTGACATTGGCCCTGAAA
129 AAGTTGAACTTGCGCTGTC-TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG-CCTGAAA
*
3585457 CT-AGAAATT-ATTGTTGACAAACAGCCGTCCC-TCGTTGTGAAGTTGAACTTGTGTTGTCT-GG
192 CTGAGAAATTGATTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTG-GTTGTCTCGG
* * * *
3585518 AGT-C-C-A-ATCCT-TCGTTGTGAAGTTGAAATTGGCT-TTGAGA-TGGGAAGTTG-
256 -GTACACGATATCCTCT-GTCGTGAAG-TGAAATCGGCTCTGGA-ATTGGGAAATTGT
* * *
3585568 TTGTTGACAATCAGCGGTCCCTTCG-TCGTGAAGTTGAACTTGCGTTGTCT-GAAGTCCAATATC
1 TTGTTGACAACCAACCGTCCCTTCGCT-GTGAAGTTGAAC-TGCGTTGTCTCG-AGTCCAATATC
* * * * *
3585631 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATGAGAATTTATTGTTGACAAGCAGCGGTCCATTC
63 CTTCGCTGTGAAGTTGAAATTGGCTCCGAAAT-AG----TATTGTCGACAAGCAGCCGCCCATTC
* *
3585696 GTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGTCT
123 GTCGTGAAGTTGAACTTGCGCTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCCT
* * *
3585761 GAAATTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGCG-TGTC
188 GAAACTGAGAAATTGATTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTG-GTTGTC
* * * * *
3585825 TCGAGTGCCACAATATCCTCCG-CGTGGAGTTGAAATCG
252 TCGGGT-ACACGATATCCTCTGTCGTGAAG-TGAAATCG
3585863 CGGATGGCCA
Statistics
Matches: 500, Mismatches: 55, Indels: 84
0.78 0.09 0.13
Matches are distributed among these distances:
299 1 0.00
300 36 0.07
301 73 0.15
302 12 0.02
303 2 0.00
304 1 0.00
305 33 0.07
306 21 0.04
307 24 0.05
308 69 0.14
309 30 0.06
310 56 0.11
311 32 0.06
312 3 0.01
313 1 0.00
314 14 0.03
315 6 0.01
318 37 0.07
319 49 0.10
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (309 bp):
TTGTTGACAACCAACCGTCCCTTCGCTGTGAAGTTGAACTGCGTTGTCTCGAGTCCAATATCCTT
CGCTGTGAAGTTGAAATTGGCTCCGAAATAGTATTGTCGACAAGCAGCCGCCCATTCGTCGTGAA
GTTGAACTTGCGCTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCCTGAAACTGA
GAAATTGATTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGGTTGTCTCGGGTACA
CGATATCCTCTGTCGTGAAGTGAAATCGGCTCTGGAATTGGGAAATTGT
Found at i:3585797 original size:509 final size:508
Alignment explanation
Indices: 3584848--3585857 Score: 1180
Period size: 509 Copynumber: 2.0 Consensus size: 508
3584838 CTGGAACTGG
* * *
3584848 GAAATGTTTGTTGACAGTCAGCCGCCCTTCGCTGTGAAGTTGAGTGTATGCCGAGTCTAATATCC
1 GAAATGCTTGTCGACAGTCAGCCGCCCTTCGCTGTGAAGTTGAGTGTATGCCGAGTCCAATATCC
* * * *
3584913 TTCGCTGTTGAAGATGAAATTGACTCTGAACGAAATCTTGTTGACAATCAGTCGTCCCTTCGTTG
66 TTCGCTGTTGAAGATGAAATTGACCCTGAACGAAATATTGTTGACAAACAGCCGTCCCTTCGTTG
3584978 TGAAGTTGAACTTGTTGTCTCGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGAAAT
131 TGAAGTTGAACTTGTTGTCTCGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGAAAT
* *
3585043 TGAAAAAATGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTGTGTTGTCTCGAGT
196 TGAAAAAATGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGTTGAACTGCGTTGTCTCGAGT
* * *
3585108 GGCACGATATCCTCCGTCGTGGAGTTAAAATCGCGGATGAAACTGAAAAGTTGTTCGTTGACAAC
261 -GCACAATATCCTCCGTCGTGAAGTTAAAATCGCGGATGAAACTGAAAAGTTATTCGTTGACAAC
* * * *
3585173 CAGCGTCCCTTCGTTGTGAAGTTGAACTTGGTTGTCTCGGGTAGCACGATATCCTCTGTCGTGGA
325 CAGCGTCCATTCGTCGTGAAGTTGAACTTGGTTGTCTCGGGTA-CACAATATCCTCTGTCGTGAA
* *
3585238 GTGAAATCGGCTCTGGAATTGGGAAATTGTTTGTTGACAACCAACCGTCCCTTCGCTGTGAAGTT
389 GTGAAATCGGCTCTGAAATTGAGAAATTGTTTGTTGACAACCAACCGTCCCTTCGCTGTGAAGTT
* *
3585303 GAACTGTG-TTGTCTCGAGT-C-CAATATCCTTCGCTGTGAAGTTGAGATTGGCTCC
454 GAACT-TGCGTGTCTCGAGTCCACAATATCCTCCGC-GTGAAGTTGAGATTGGCTCC
* * *
3585357 GAAATGCTTGTCGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGGTCCA
1 GAAATGCTTGTCGACAGTCAGCCG-CCCTTCGCTGTGAAGTTGAG--TGT-ATG-C-CGAGTCCA
* * *
3585422 ATATCCTTCG-TG-TGAAGTTGACATTGGCCCTGAAACTAGAAATTATTGTTGACAAACAGCCGT
60 ATATCCTTCGCTGTTGAAGATGAAATTGACCCTG-AAC--GAAA-TATTGTTGACAAACAGCCGT
* * *
3585485 CCC-TCGTTGTGAAGTTGAACTTGTGTTGTCTGGAGTCC-A-ATCCTTCGTTGTGAAGTTGAAAT
121 CCCTTCGTTGTGAAGTTGAAC-T-TGTTGTCTCGAGTCCAATATCCTTCGCTGCGAAGTTGAAAT
* * ** ** * *
3585547 TGGCTTTGAGA-TGGGAAGTTG-TTGTTGACAATCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
184 TGGCTCTGAAATTGAAAAAATGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGTTGAAC-TG
* * * * ** * *
3585610 CGTTGTCT-GAAGT-C-CAATATCCTTCGTTGTGAAGTTGAAATTG-GCTCTGAAA-TGAGAATT
248 CGTTGTCTCG-AGTGCACAATATCCTCCGTCGTGAAGTTAAAATCGCG-GATGAAACTGAAAAGT
*
3585670 TATT-GTTGACAAGCAGCGGTCCATTCGTCGTGAAGTTGAACTTGCGTTGTCT-GGAGT-C-CAA
311 TATTCGTTGACAACCAGC-GTCCATTCGTCGTGAAGTTGAACTTG-GTTGTCTCGG-GTACACAA
* * * *
3585731 TATCCT-TCGTTGTGAAGTTGAAATTGG-TCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCCG
373 TATCCTCT-GTCGTGAAG-TGAAATCGGCTCTGAAATTGAGAAATTGTTTGTTGACAACCAACCG
* *
3585794 TCCCTTCGTTGTGAAGTTGAACTTGCGTGTCTCGAGTGCCACAATATCCTCCGCGTGGAGTTGA
436 TCCCTTCGCTGTGAAGTTGAACTTGCGTGTCTCGAGT-CCACAATATCCTCCGCGTGAAGTTGA
3585858 AATCGCGGAT
Statistics
Matches: 425, Mismatches: 52, Indels: 46
0.81 0.10 0.09
Matches are distributed among these distances:
508 3 0.01
509 101 0.24
510 41 0.10
511 46 0.11
512 52 0.12
513 19 0.04
514 43 0.10
515 33 0.08
516 51 0.12
517 22 0.05
518 14 0.03
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (508 bp):
GAAATGCTTGTCGACAGTCAGCCGCCCTTCGCTGTGAAGTTGAGTGTATGCCGAGTCCAATATCC
TTCGCTGTTGAAGATGAAATTGACCCTGAACGAAATATTGTTGACAAACAGCCGTCCCTTCGTTG
TGAAGTTGAACTTGTTGTCTCGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGAAAT
TGAAAAAATGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGTTGAACTGCGTTGTCTCGAGT
GCACAATATCCTCCGTCGTGAAGTTAAAATCGCGGATGAAACTGAAAAGTTATTCGTTGACAACC
AGCGTCCATTCGTCGTGAAGTTGAACTTGGTTGTCTCGGGTACACAATATCCTCTGTCGTGAAGT
GAAATCGGCTCTGAAATTGAGAAATTGTTTGTTGACAACCAACCGTCCCTTCGCTGTGAAGTTGA
ACTTGCGTGTCTCGAGTCCACAATATCCTCCGCGTGAAGTTGAGATTGGCTCC
Found at i:3586297 original size:29 final size:26
Alignment explanation
Indices: 3586232--3586298 Score: 62
Period size: 29 Copynumber: 2.3 Consensus size: 26
3586222 GCCTATCTGG
*
3586232 AATCTTGATTCTTGAATCTTCAAATTTT
1 AATC-TGA-TCTTGAATCTTCAAATTTA
3586260 AATCCCTGATCTTGAATTCTTCAAATGTTCA
1 AAT--CTGATCTTGAA-TCTTCAAAT-TT-A
3586291 AATCTGAT
1 AATCTGAT
3586299 GTGCACATTC
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
28 10 0.30
29 17 0.52
30 3 0.09
31 3 0.09
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (26 bp):
AATCTGATCTTGAATCTTCAAATTTA
Found at i:3586540 original size:68 final size:66
Alignment explanation
Indices: 3586449--3586605 Score: 176
Period size: 68 Copynumber: 2.4 Consensus size: 66
3586439 AAGATATCTG
* * * *
3586449 GTGTTTCATGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAATGGAAATAAAATT-GAAGA
1 GTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATT-TGTTTTAAGGGAAAT-AAATTCAAAG-
*
3586513 TTTT
63 GTTT
* * * *
3586517 GTGTTTCAAGAGTAACTGTCTCAAGGGAGATAAAATTTGTTTTAGGGGAAATAAATTCAAAGGTT
1 GTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTGTTTTAAGGGAAATAAATTCAAAGGTT
3586582 T
66 T
*
3586583 -TGTTTCAAG-GGAACTGTCTCAAG
1 GTGTTTCAAGAGAAACTGTCTCAAG
3586606 ATAGACGAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
64 13 0.17
65 9 0.12
66 8 0.10
67 16 0.21
68 32 0.41
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.32
Consensus pattern (66 bp):
GTGTTTCAAGAGAAACTGTCTCAAGGGAAACAAAATTTGTTTTAAGGGAAATAAATTCAAAGGTT
T
Found at i:3586639 original size:36 final size:35
Alignment explanation
Indices: 3586582--3586858 Score: 230
Period size: 36 Copynumber: 7.9 Consensus size: 35
3586572 TTCAAAGGTT
* *
3586582 TTGTTTCAAG-GGAACTGTCTCAAGATAGACGAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
3586617 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * *
3586652 CTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAAT
1 -TT-GTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
* * * **
3586690 TTGTTTCAA-ATAAAACATAT-TC---A-A-A-TATT
1 TTGTTTCAAGA-GAAAC-TGTCTCAAGAGAGACAAAA
*
3586719 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * *
3586754 TTTATTTCAAGGGAAACTGTCTCAAGATAGACGAAAT
1 -TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
3586791 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * *
3586826 TTTTGTTTCAAGGGAAATTATCTCAAGAGAGAC
1 --TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
3586859 GAATATTTAT
Statistics
Matches: 196, Mismatches: 28, Indels: 34
0.76 0.11 0.13
Matches are distributed among these distances:
28 2 0.01
29 17 0.09
31 1 0.01
32 2 0.01
33 1 0.01
34 1 0.01
35 19 0.10
36 89 0.45
37 61 0.31
38 3 0.02
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (35 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
Found at i:3586671 original size:137 final size:137
Alignment explanation
Indices: 3586530--3586843 Score: 407
Period size: 137 Copynumber: 2.3 Consensus size: 137
3586520 TTTCAAGAGT
* * * *
3586530 AACTGTCTCAAGGGAGATAAAATTTGTTTTAGGGGAAATAAATTCAAAGGTTTTGTTTCAAGGG-
1 AACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAATAAATTCAAAGATTTTGTTTCAAGGGA
* *
3586594 AACTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGT
66 AACTGTCTCAAGAGAGAC-AAAATTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTAGT
3586658 TCCAAAAGA
129 TCCAAAAGA
* *** * * *
3586667 AACTGTCTCAAGGGAGACGAAATTTGTTTCAAATAAAACATATTCAAATATTTTGTTTCAAGGGA
1 AACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAATAAATTCAAAGATTTTGTTTCAAGGGA
* * * * *
3586732 AACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTGTCTCAAGATAGACGAAATTTGTTT
66 AACTGTCTCAAGAGAGACAAAATTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTAGTTC
*
3586797 CAAGAGA
131 CAAAAGA
*
3586804 AACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGGGAAAT
1 AACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAAT
3586844 TATCTCAAGA
Statistics
Matches: 149, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
137 88 0.59
138 61 0.41
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (137 bp):
AACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAATAAATTCAAAGATTTTGTTTCAAGGGA
AACTGTCTCAAGAGAGACAAAATTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTAGTTC
CAAAAGA
Found at i:3586789 original size:174 final size:174
Alignment explanation
Indices: 3586585--3586928 Score: 485
Period size: 174 Copynumber: 2.0 Consensus size: 174
3586575 AAAGGTTTTG
3586585 TTTCAAGGGAACTGTCTCAAGATAGACGAAAATTGTTTCAAGAGAAACTGTCTCAAGAGAGACAA
1 TTTCAAGGGAACTGTCTCAAGATAGACGAAAATTGTTTCAAGAGAAACTGTCTCAAGAGAGACAA
* * * *
3586650 AACTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAA-ATTTGTTTCAAATAAAACATATTCAA
66 AACTTAGTTCCAAAAGAAACTATCTCAAGAGAGACGAATATTTATTTCAAAGAAAACATATTC-A
*
3586714 ATATTT-TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTA
130 ATATTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTA
*
3586758 TTTCAAGGGAAACTGTCTCAAGATAGACGAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACA
1 TTTCAAGGG-AACTGTCTCAAGATAGACGAAAATTGTTTCAAGAGAAACTGTCTCAAGAGAGACA
* * * ** * * * ** *
3586823 AAATTTTGTTTCAAGGGAAATTATCTCAAGAGAGACGAATATTTATTTCAAGGGAAATGTTTTCA
65 AAACTTAGTTCCAAAAGAAACTATCTCAAGAGAGACGAATATTTATTTCAAAGAAAACATATTCA
* *
3586888 ATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA
130 ATATTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
3586929 ACTGTCTCAA
Statistics
Matches: 149, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
173 9 0.06
174 91 0.61
175 49 0.33
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (174 bp):
TTTCAAGGGAACTGTCTCAAGATAGACGAAAATTGTTTCAAGAGAAACTGTCTCAAGAGAGACAA
AACTTAGTTCCAAAAGAAACTATCTCAAGAGAGACGAATATTTATTTCAAAGAAAACATATTCAA
TATTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTA
Found at i:3586880 original size:37 final size:36
Alignment explanation
Indices: 3586718--3586879 Score: 234
Period size: 36 Copynumber: 4.4 Consensus size: 36
3586708 ATTCAAATAT
3586718 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * *
3586754 TTTATTTCAAGGGAAACTGTCTCAAGATAGACGAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
*
3586790 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * *
3586826 TTTTGTTTCAAGGGAAATTATCTCAAGAGAGACGAATA
1 -TTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC-AAAA
*
3586864 TTTATTTCAAGGGAAA
1 TTTGTTTCAAGGGAAA
3586880 TGTTTTCAAT
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
36 65 0.58
37 44 0.39
38 3 0.03
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.28
Consensus pattern (36 bp):
TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
Found at i:3586932 original size:21 final size:21
Alignment explanation
Indices: 3586906--3586963 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
3586896 GTTTCAAGAG
3586906 AAACTGTCTCAAGGGAGACAA
1 AAACTGTCTCAAGGGAGACAA
3586927 AAACTGTCTCAAGGGAGACAA
1 AAACTGTCTCAAGGGAGACAA
** *
3586948 AATTTGTTTCAAGGGA
1 AAACTGTCTCAAGGGA
3586964 AACTGTCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (21 bp):
AAACTGTCTCAAGGGAGACAA
Found at i:3587035 original size:35 final size:35
Alignment explanation
Indices: 3586926--3587035 Score: 89
Period size: 35 Copynumber: 3.1 Consensus size: 35
3586916 AAGGGAGACA
* *
3586926 AAAACTGTCTCAAGGGAGACAAAAT-TTGTTTCAAGG
1 AAAACTGTCTCAAGAGAGAC-AAATCTTGTTTTAA-G
* * * * * *
3586962 GAAACTGTCTCAAGAGGGACAAAAC-TCTTCTAGTG
1 AAAACTGTCTCAAGAGAGACAAATCTTGTTTTA-AG
* *
3586997 AAAACGGTCTCAAGCGAGACAAATCTTGTTTTAAG
1 AAAACTGTCTCAAGAGAGACAAATCTTGTTTTAAG
3587032 AAAA
1 AAAA
3587036 ACAATCATGA
Statistics
Matches: 55, Mismatches: 16, Indels: 7
0.71 0.21 0.09
Matches are distributed among these distances:
35 33 0.60
36 22 0.40
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (35 bp):
AAAACTGTCTCAAGAGAGACAAATCTTGTTTTAAG
Found at i:3587962 original size:22 final size:22
Alignment explanation
Indices: 3587937--3587980 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
3587927 TATTTTTGTT
3587937 CATTTGATGCT-AAATGGTTTGA
1 CATTTGATGCTCAAA-GGTTTGA
3587959 CATTTGATGCTCAAAGGTTTGA
1 CATTTGATGCTCAAAGGTTTGA
3587981 TGGGGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (22 bp):
CATTTGATGCTCAAAGGTTTGA
Found at i:3588623 original size:23 final size:22
Alignment explanation
Indices: 3588591--3588639 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
3588581 CCATTTTTTA
3588591 TTTTTGTTCTTGTT-TTTTTCCT
1 TTTTTGTTCTT-TTCTTTTTCCT
*
3588613 TTTTTGCTTCTTTTCTTTTTTCT
1 TTTTTG-TTCTTTTCTTTTTCCT
3588636 TTTT
1 TTTT
3588640 GCCCTTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (22 bp):
TTTTTGTTCTTTTCTTTTTCCT
Found at i:3588640 original size:22 final size:22
Alignment explanation
Indices: 3588584--3588641 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
3588574 TTTTGTCCCA
*
3588584 TTTTTTATTTTTG-TTCTTGTT
1 TTTTTTCTTTTTGCTTCTTGTT
*
3588605 TTTTTCCTTTTTTGCTTCTT-TT
1 TTTTTTC-TTTTTGCTTCTTGTT
3588627 CTTTTTTCTTTTTGC
1 -TTTTTTCTTTTTGC
3588642 CCTTTTTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 5 0.16
22 15 0.48
23 11 0.35
ACGTcount: A:0.02, C:0.14, G:0.07, T:0.78
Consensus pattern (22 bp):
TTTTTTCTTTTTGCTTCTTGTT
Found at i:3591942 original size:15 final size:15
Alignment explanation
Indices: 3591924--3591953 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
3591914 AAAACCATGT
*
3591924 TAGATAAAAATGTAA
1 TAGATAAAAAGGTAA
3591939 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
3591954 GAAATAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (15 bp):
TAGATAAAAAGGTAA
Found at i:3592104 original size:20 final size:19
Alignment explanation
Indices: 3592036--3592141 Score: 54
Period size: 20 Copynumber: 5.2 Consensus size: 19
3592026 GATAGTAGTA
* *
3592036 AAATAAATATAAAAATAAAGA
1 AAAT-AATAAAAAAATAAA-T
* * *
3592057 AAAGAAGAAAAAAAAAAAT
1 AAATAATAAAAAAATAAAT
3592076 ATAGA-AATAAAACAAATAAAT
1 A-A-ATAATAAAA-AAATAAAT
*
3592097 AAATAATAATAAAAGTAAAAT
1 AAATAATAA-AAAAAT-AAAT
3592118 AATATATATAAAATAAA-AAAT
1 AA-ATA-ATAAAA-AAATAAAT
3592139 AAA
1 AAA
3592142 AAAAGTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
19 2 0.03
20 28 0.42
21 26 0.39
22 5 0.07
23 6 0.09
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (19 bp):
AAATAATAAAAAAATAAAT
Found at i:3592109 original size:14 final size:13
Alignment explanation
Indices: 3592034--3592180 Score: 63
Period size: 12 Copynumber: 11.0 Consensus size: 13
3592024 AAGATAGTAG
*
3592034 TAAAATAAATATA
1 TAAAATAAATAAA
*
3592047 -AAAATAAAGAAA
1 TAAAATAAATAAA
* *
3592059 -AGAAGAAA-AAA
1 TAAAATAAATAAA
* * *
3592070 AAAAATATAGAAA
1 TAAAATAAATAAA
*
3592083 TAAAACAAATAAA
1 TAAAATAAATAAA
3592096 T-AAATAATAATAAAA
1 TAAAAT-A-AAT-AAA
*
3592111 GTAAAATAATATATA
1 -TAAAATAA-ATAAA
3592126 TAAAATAAA-AAA
1 TAAAATAAATAAA
3592138 TAAAA-AAAGTAAA
1 TAAAATAAA-TAAA
*
3592151 TATAATATATATATATA
1 TA-AA-ATA-A-ATAAA
*
3592168 TAAAATTAATAAA
1 TAAAATAAATAAA
3592181 ACTGATAAAA
Statistics
Matches: 102, Mismatches: 17, Indels: 30
0.68 0.11 0.20
Matches are distributed among these distances:
11 6 0.06
12 31 0.30
13 24 0.24
14 14 0.14
15 9 0.09
16 7 0.07
17 10 0.10
18 1 0.01
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.23
Consensus pattern (13 bp):
TAAAATAAATAAA
Found at i:3592117 original size:21 final size:19
Alignment explanation
Indices: 3592093--3592178 Score: 69
Period size: 18 Copynumber: 4.7 Consensus size: 19
3592083 TAAAACAAAT
3592093 AAAT-AAATAATA-ATA-A
1 AAATAAAATAATATATATA
*
3592109 AAGTAAAATAATATATATA
1 AAATAAAATAATATATATA
3592128 AAATAAAA-AATA-A-A-A
1 AAATAAAATAATATATATA
3592143 AAAGTAAATATAATATATATA
1 AAA-TAAA-ATAATATATATA
*
3592164 TATATAAAATTAATA
1 -AAATAAAA-TAATA
3592179 AAACTGATAA
Statistics
Matches: 56, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
15 4 0.07
16 8 0.14
17 10 0.18
18 11 0.20
19 9 0.16
20 2 0.04
21 10 0.18
22 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATAAAATAATATATATA
Found at i:3592117 original size:25 final size:25
Alignment explanation
Indices: 3592089--3592157 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
3592079 GAAATAAAAC
*
3592089 AAATAAATAAATAATAATAAAAGTA
1 AAATAAATAAATAATAATAAAAATA
*
3592114 AAATAATATATATAA-AATAAAAAATA
1 AAATAA-ATAAATAATAAT-AAAAATA
3592140 AAA-AAAGTAAAT-ATAATA
1 AAATAAA-TAAATAATAATA
3592158 TATATATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
24 3 0.08
25 18 0.49
26 16 0.43
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (25 bp):
AAATAAATAAATAATAATAAAAATA
Found at i:3592139 original size:42 final size:43
Alignment explanation
Indices: 3592048--3592180 Score: 116
Period size: 42 Copynumber: 3.2 Consensus size: 43
3592038 ATAAATATAA
* * * * * * *
3592048 AAATAAAGAAAAGAAG-AAA-AAAAAAAATATAGAAATAAAAC
1 AAATAAATAAAAAAAGTAAATATAAAATATATATATATAAAAT
3592089 AAATAAATAAATAATAA-TAAA-AGTAAAATA-ATATATATAAAAT
1 AAATAAATAAA-AA-AAGTAAATA-TAAAATATATATATATAAAAT
*
3592132 AAA-AAATAAAAAAAGTAAATATAATATATATATATATAAAAT
1 AAATAAATAAAAAAAGTAAATATAAAATATATATATATAAAAT
*
3592174 TAATAAA
1 AAATAAA
3592181 ACTGATAAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
40 2 0.03
41 22 0.29
42 24 0.32
43 22 0.29
44 5 0.07
ACGTcount: A:0.72, C:0.01, G:0.05, T:0.23
Consensus pattern (43 bp):
AAATAAATAAAAAAAGTAAATATAAAATATATATATATAAAAT
Found at i:3592140 original size:35 final size:34
Alignment explanation
Indices: 3592091--3592198 Score: 119
Period size: 36 Copynumber: 3.1 Consensus size: 34
3592081 AATAAAACAA
*
3592091 ATAAATAAATAATAATAAAAGTAAAATAATATAT
1 ATAAATAAAAAATAATAAAAGTAAAATAATATAT
*
3592125 ATAAAATAAAAAATAAAAAAAGTAAATATAATATAT
1 AT-AAATAAAAAATAATAAAAGTAAA-ATAATATAT
* * *
3592161 ATATATATAAAATTAATAAAACTGATAAA-AATATAT
1 ATAAATA-AAAAATAATAAAAGT-A-AAATAATATAT
3592197 AT
1 AT
3592199 TTAATATAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
34 2 0.03
35 25 0.40
36 32 0.51
37 2 0.03
38 2 0.03
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.30
Consensus pattern (34 bp):
ATAAATAAAAAATAATAAAAGTAAAATAATATAT
Found at i:3592163 original size:36 final size:36
Alignment explanation
Indices: 3592091--3592181 Score: 121
Period size: 35 Copynumber: 2.5 Consensus size: 36
3592081 AATAAAACAA
* *
3592091 ATAAATAAATAATAATAAAAGTAAAATAATATATAT
1 ATAAATAAAAAATAAAAAAAGTAAAATAATATATAT
3592127 A-AAATAAAAAATAAAAAAAGTAAATATAATATATAT
1 ATAAATAAAAAATAAAAAAAGTAAA-ATAATATATAT
*
3592163 ATATATAAAATTAATAAAA
1 ATAAATAAAA--AATAAAA
3592182 CTGATAAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
35 21 0.44
36 13 0.27
37 7 0.15
39 7 0.15
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (36 bp):
ATAAATAAAAAATAAAAAAAGTAAAATAATATATAT
Found at i:3592626 original size:34 final size:34
Alignment explanation
Indices: 3592583--3592652 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
3592573 GAATCCTAGC
3592583 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
* *
3592617 AAAATTCTATCCTATTTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
3592651 AA
1 AA
3592653 TAGGACGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.41
Consensus pattern (34 bp):
AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
Found at i:3594740 original size:37 final size:37
Alignment explanation
Indices: 3594686--3594805 Score: 190
Period size: 37 Copynumber: 3.3 Consensus size: 37
3594676 GGTAACCAAT
*
3594686 TTTGAAAAA-ATGGTTTTCAAAGTTTGGTAAATGTTTA
1 TTTGAAAAATA-GTTTTTCAAAGTTTGGTAAATGTTTA
3594723 TTTGAAAAATAGTTTTTCAAAGTTTGGTAAATGTTTA
1 TTTGAAAAATAGTTTTTCAAAGTTTGGTAAATGTTTA
*
3594760 TTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT-
1 TTTGAAAAATAGTTTTTCAAAGTTTGGTAAATGTTTA
*
3594796 GTTGAAAAAT
1 TTTGAAAAAT
3594806 GATAATGGGA
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
36 9 0.11
37 69 0.87
38 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.44
Consensus pattern (37 bp):
TTTGAAAAATAGTTTTTCAAAGTTTGGTAAATGTTTA
Found at i:3595236 original size:16 final size:16
Alignment explanation
Indices: 3595215--3595248 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
3595205 TTACTATTCA
*
3595215 CGTGAATAGTGAATTT
1 CGTGAATAGTGAAATT
3595231 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
3595247 CG
1 CG
3595249 GTCGGCGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (16 bp):
CGTGAATAGTGAAATT
Found at i:3599603 original size:34 final size:34
Alignment explanation
Indices: 3599548--3599691 Score: 141
Period size: 34 Copynumber: 4.2 Consensus size: 34
3599538 TGAAAGATTA
** *
3599548 AAAAATGGTTTT--AAGTTTGGTAACCAACTTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATATCTTTG
* *
3599580 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATATCT-TTG
*
3599615 -AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAA--TATCTTTG
* * * *
3599650 AAAAATAGTTTTCAAAGTTTGGTAGATGTTTGTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATATCT-TTG
3599685 AAAAATG
1 AAAAATG
3599692 ATAATGGGAT
Statistics
Matches: 93, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
32 12 0.13
34 40 0.43
35 15 0.16
36 26 0.28
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.41
Consensus pattern (34 bp):
AAAAATGGTTTTCAAAGTTTGGTAAATATCTTTG
Found at i:3599662 original size:36 final size:36
Alignment explanation
Indices: 3599575--3599691 Score: 186
Period size: 34 Copynumber: 3.3 Consensus size: 36
3599565 TGGTAACCAA
3599575 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
3599611 C-TTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* *
3599645 CTTTGAAAAATAGTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
3599681 -GTTGAAAAATG
1 CTTTGAAAAATG
3599692 ATAATGGGAT
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
34 31 0.41
35 15 0.20
36 29 0.39
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.43
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:3599805 original size:12 final size:12
Alignment explanation
Indices: 3599788--3599819 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
3599778 ATTTAGCTTC
3599788 AAAATCATCCCA
1 AAAATCATCCCA
3599800 AAAATCATCCCA
1 AAAATCATCCCA
3599812 AAAATCAT
1 AAAATCAT
3599820 TTCTTTCTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAATCATCCCA
Found at i:3612995 original size:3 final size:3
Alignment explanation
Indices: 3612939--3612968 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
3612929 TTATTTATAT
3612939 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3612969 ATAAATAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:3620343 original size:136 final size:136
Alignment explanation
Indices: 3620099--3620557 Score: 756
Period size: 136 Copynumber: 3.4 Consensus size: 136
3620089 AAACAAAAAA
*
3620099 ATCCTTAGATAACCAGACGTCCTCATCACGAAGGAACCGTGTTATCTCAAATATCTTAAAGATGG
1 ATCCTTAGATAACCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGG
** * *
3620164 CCAGATACCCTCATCACGAAGGAACAATGTCATCTACCAATCAGAACTCCTCATAATGAAGGAGT
66 CCAGATGTCCTCATCACGAAGGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGT
*
3620229 TGCGTC
131 CGCGTC
* * *
3620235 ATCCTTAGATAACCAGACGTCCACGTCACGAATGAACCATGTTATCTCAAATATCTTAAAGATGG
1 ATCCTTAGATAACCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGG
* *
3620300 TCAGATGTCCTCATCACGAATGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGT
66 CCAGATGTCCTCATCACGAAGGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGT
* *
3620365 CGCATT
131 CGCGTC
*
3620371 ATCCTTAGATAACCAGACGTCCTTATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGG
1 ATCCTTAGATAACCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGG
* *
3620436 CCAGATGTCCTCATCACGAAGGAACACTGTCATCTACTAATCAGAACTCCTCATCACGAAGGAGT
66 CCAGATGTCCTCATCACGAAGGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGT
3620501 CGCGTC
131 CGCGTC
* *
3620507 ATCCTTAGATAACCAGATGTCCTCATCACGAAGGAACCGTGTTATCTCAAA
1 ATCCTTAGATAACCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAA
3620558 CATCCTTAGA
Statistics
Matches: 297, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
136 297 1.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.24
Consensus pattern (136 bp):
ATCCTTAGATAACCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGG
CCAGATGTCCTCATCACGAAGGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGT
CGCGTC
Found at i:3620508 original size:40 final size:43
Alignment explanation
Indices: 3620443--3620543 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
3620433 TGGCCAGATG
* *
3620443 TCCTCATCACGAAGGAACACTGTCAT-C-TA-CTAATCAGAAC
1 TCCTCATCACGAAGGAACACTGTCATCCTTAGATAACCAGAAC
* * **
3620483 TCCTCATCACGAAGGAGTCGC-GTCATCCTTAGATAACCAGATG
1 TCCTCATCACGAAGGA-ACACTGTCATCCTTAGATAACCAGAAC
3620526 TCCTCATCACGAAGGAAC
1 TCCTCATCACGAAGGAAC
3620544 CGTGTTATCT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
40 21 0.42
41 3 0.06
42 3 0.06
43 23 0.46
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.22
Consensus pattern (43 bp):
TCCTCATCACGAAGGAACACTGTCATCCTTAGATAACCAGAAC
Found at i:3620538 original size:43 final size:40
Alignment explanation
Indices: 3620436--3620543 Score: 119
Period size: 40 Copynumber: 2.6 Consensus size: 40
3620426 TTAAAGATGG
*
3620436 CCAGATGTCCTCATCACGAAGGAACACTGTCATCTACTAA
1 CCAGATGTCCTCATCACGAAGGAACACTGTCATCTAATAA
* ** * *
3620476 TCAGAACTCCTCATCACGAAGGAGTCGC-GTCATCCTTAGATAA
1 CCAGATGTCCTCATCACGAAGGA-ACACTGTCAT-C-TA-ATAA
3620519 CCAGATGTCCTCATCACGAAGGAAC
1 CCAGATGTCCTCATCACGAAGGAAC
3620544 CGTGTTATCT
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
40 25 0.46
41 3 0.06
42 3 0.06
43 23 0.43
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (40 bp):
CCAGATGTCCTCATCACGAAGGAACACTGTCATCTAATAA
Found at i:3620584 original size:52 final size:52
Alignment explanation
Indices: 3620506--3620658 Score: 173
Period size: 52 Copynumber: 2.9 Consensus size: 52
3620496 GGAGTCGCGT
* *
3620506 CATCCTTAGATAACCAGATGTCCTCATCACGAAGGAACCGTGTTATCTCAAA
1 CATCCTTAGATAACCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAA
* * *
3620558 CATCCTTAGATAACCTGACGTCCTCATCATGAATGAACCATGTTATCTCAAA
1 CATCCTTAGATAACCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAA
* ** * * * *
3620610 TAT-CTTAAAGATGGCCAGATGTCTTCATCACGAAGGAACAATGTCATCT
1 CATCCTT--AGATAACCAGACGTCCTCATCACGAAGGAACCATGTTATCT
3620659 ACCAATCAGA
Statistics
Matches: 84, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
51 3 0.04
52 49 0.58
53 32 0.38
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (52 bp):
CATCCTTAGATAACCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAA
Found at i:3620774 original size:53 final size:53
Alignment explanation
Indices: 3620709--3620847 Score: 206
Period size: 53 Copynumber: 2.6 Consensus size: 53
3620699 TTAGATAACT
*
3620709 AGATGTCCTCATCACGAAGGAACTGTGTAATCTCAAATATCCTAAAGATGGCC
1 AGATGTCCTCATCACGAAGGAACTATGTAATCTCAAATATCCTAAAGATGGCC
* * *
3620762 AGATGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGGCC
1 AGATGTCCTCATCACGAAGGAACTATGTAATCTCAAATATCCTAAAGATGGCC
* * * *
3620815 AAATGGCCTCATCACAAAGGAACTATGTCATCT
1 AGATGTCCTCATCACGAAGGAACTATGTAATCT
3620848 ACCAATCAGA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 77 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (53 bp):
AGATGTCCTCATCACGAAGGAACTATGTAATCTCAAATATCCTAAAGATGGCC
Found at i:3620849 original size:189 final size:188
Alignment explanation
Indices: 3620383--3620972 Score: 903
Period size: 189 Copynumber: 3.1 Consensus size: 188
3620373 CCTTAGATAA
*
3620383 CCAGACGTCCTTATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGGCCAGATGTCCTC
1 CCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGGCCAGATGTCCTC
* *
3620448 ATCACGAAGGAACACTGTCATCTACTAATCAGAACTCCTCATCACGAAGGAGTCGCGTCATCCTT
66 ATCACGAAGGAACA-TGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTTGCGTCATCCTT
* * **
3620513 AGATAACCAGATGTCCTCATCACGAAGGAACCGTGTTATCTCAAACATCCT-TAGATAA
130 AGATAACCAGATGTCCTCATCACGAAGGAACCGTGTTATCTCAAATATCCTAAAGATGG
* * * *
3620571 CCTGACGTCCTCATCATGAATGAACCATGTTATCTCAAATATCTTAAAGATGGCCAGATGTCTTC
1 CCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGGCCAGATGTCCTC
* *
3620636 ATCACGAAGGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGGGTTGCATCATCCTT
66 ATCACGAAGGAAC-ATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTTGCGTCATCCTT
* * *
3620701 AGATAACTAGATGTCCTCATCACGAAGGAACTGTGTAATCTCAAATATCCTAAAGATGG
130 AGATAACCAGATGTCCTCATCACGAAGGAACCGTGTTATCTCAAATATCCTAAAGATGG
* * *
3620760 CCAGATGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGGCCAAATGGCCTC
1 CCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGGCCAGATGTCCTC
* * *
3620825 ATCACAAAGGAACTATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTTGTGTTATCCTT
66 ATCACGAAGGAAC-ATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTTGCGTCATCCTT
* * *
3620890 AGATAACCAGATGTCCTCATTACAAAGGAACCGTGTTATCTCAAATATCTTAAAGATGG
130 AGATAACCAGATGTCCTCATCACGAAGGAACCGTGTTATCTCAAATATCCTAAAGATGG
* *
3620949 ACAGATGTCCTCATCACGAAGGAA
1 CCAGACGTCCTCATCACGAAGGAA
3620973 TAATGTCATC
Statistics
Matches: 364, Mismatches: 36, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
188 166 0.46
189 198 0.54
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (188 bp):
CCAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGGCCAGATGTCCTC
ATCACGAAGGAACATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTTGCGTCATCCTTA
GATAACCAGATGTCCTCATCACGAAGGAACCGTGTTATCTCAAATATCCTAAAGATGG
Found at i:3620900 original size:136 final size:136
Alignment explanation
Indices: 3620767--3621255 Score: 665
Period size: 136 Copynumber: 3.6 Consensus size: 136
3620757 TGGCCAGATG
* * * *
3620767 TCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTAAAGATGGCCAAATGGCCTCATCACAA
1 TCCTCATCACGAAGGAACCGTGTTATCTCAAATATCTTAAAGATGGACAAATGTCCTCATCACGA
* * *
3620832 AGGAACTATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTTGTGTTATCCTTAGATAAC
66 AGGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTCGTGTCATCCTTAGATAAC
**
3620897 CAGATG
131 CAGACA
* * *
3620903 TCCTCATTACAAAGGAACCGTGTTATCTCAAATATCTTAAAGATGGACAGATGTCCTCATCACGA
1 TCCTCATCACGAAGGAACCGTGTTATCTCAAATATCTTAAAGATGGACAAATGTCCTCATCACGA
* * * ** *
3620968 AGGAATAATGTCATCAACCAATCAGAACTCCTTATCACGAAGGAGTCACGCCATCCTTAGATAAC
66 AGGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTCGTGTCATCCTTAGATAAC
3621033 CAGACA
131 CAGACA
* * *
3621039 TCCTCATCACGAATGAACTGTGTTATCTCAAATATCTTAAAGATGGACAGATGTCCTCATCACGA
1 TCCTCATCACGAAGGAACCGTGTTATCTCAAATATCTTAAAGATGGACAAATGTCCTCATCACGA
* * *
3621104 AGGAACAATGTCATCTACCAATCATAATTCCTCATCACGAAGGAGTCGTGTCATCCTCAGATAAC
66 AGGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTCGTGTCATCCTTAGATAAC
3621169 CAGACA
131 CAGACA
* * * ** *
3621175 TCCTCATCAAGAAGGATCCGTGTTATCACTATTTATCTCTAAACAT-GACCAAATGTCCTCATCA
1 TCCTCATCACGAAGGAACCGTGTTATCTC-AAATATCT-TAAAGATGGA-CAAATGTCCTCATCA
*
3621239 TGAAGGAACAATGTCAT
63 CGAAGGAACAATGTCAT
3621256 ACACCAGTTT
Statistics
Matches: 309, Mismatches: 41, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
136 265 0.86
137 8 0.03
138 36 0.12
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (136 bp):
TCCTCATCACGAAGGAACCGTGTTATCTCAAATATCTTAAAGATGGACAAATGTCCTCATCACGA
AGGAACAATGTCATCTACCAATCAGAACTCCTCATCACGAAGGAGTCGTGTCATCCTTAGATAAC
CAGACA
Found at i:3622753 original size:5 final size:5
Alignment explanation
Indices: 3622743--3622768 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
3622733 AAAGGGATCA
3622743 TAAAT TAAAT TAAAT TAAAT TAAAT T
1 TAAAT TAAAT TAAAT TAAAT TAAAT T
3622769 TGTTAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAAAT
Found at i:3624943 original size:228 final size:227
Alignment explanation
Indices: 3624540--3625189 Score: 728
Period size: 228 Copynumber: 2.9 Consensus size: 227
3624530 GATAAACAAG
* * * *
3624540 ATGCAAATCTTCGTCAAGACCCTGACCGGAAAGACAATCACCCTT-GAAGTCGAGAGTTCCGATA
1 ATGCAGATCTTCGTCAAGACCCTGACCGGAAA-ACCAT-AACCTTGGAAGTCGAGAGCTCCGATA
* * * * *
3624604 CCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCGGATCAGCAGCGTCTC
64 CGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCGGATCAGCAGAGGCTC
* *
3624669 ATCTTCGCCGGAAAACAGCTCGAAGACGGCCGGACTTTGGCCGATTACAACATCCAGAAGGAGTC
129 ATATTCGCCGGAAAACAGCTCGAAGACGGCCGGACTTTGGCCGATTACAACATCCAGAAGGAATC
* *
3624734 AACCCTCCACCTCGTCCTCCGTCTTCGTGGAGGC
194 AACCCTCCACCTCGTCCTCAGGCTTCGTGGAGGC
* * *
3624768 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACCATAACCTTGGAAGTCGAGAGCTCCGACAC
1 ATGCAGATCTTCGTCAAGACCCTGACCGG-AAAACCATAACCTTGGAAGTCGAGAGCTCCGATAC
*
3624833 GATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCGGACCAGCAGAGGCTCA
65 GATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCGGATCAGCAGAGGCTCA
* *
3624898 TATTCGCCGGAAAACAGCTCGAGGACGGCCGGACTTTGGCCGATTACAACATCCAGAAGGAATCG
130 TATTCGCCGGAAAACAGCTCGAAGACGGCCGGACTTTGGCCGATTACAACATCCAGAAGGAATCA
* * * ** * * *
3624963 ACCCTTCATCTGGTTTTGAGGCTTCGTGGTGGG
195 ACCCTCCACCTCGTCCTCAGGCTTCGTGGAGGC
** * * * * * *
3624996 ATGCAGATCTTCGTCAAGACTTTGACTGGGAAAACCATTACCCTGGAGGTGGAGAGCTCTGATAC
1 ATGCAGATCTTCGTCAAGACCCTGAC-CGGAAAACCATAACCTTGGAAGTCGAGAGCTCCGATAC
* * * * * * * * * * *
3625061 GATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCCCCAGATCAGCAGAGGTTGA
65 GATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCGGATCAGCAGAGGCTCA
* * * ** * * ** * *
3625126 TTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTCTT-GCTGATTACAATATCCAGAAGGAATC
130 TATTCGCCGGAAAACAGCTCGAAGACGGCCGGACT-TTGGCCGATTACAACATCCAGAAGGAATC
3625190 CACTCTTCAC
Statistics
Matches: 356, Mismatches: 62, Indels: 8
0.84 0.15 0.02
Matches are distributed among these distances:
227 5 0.01
228 344 0.97
229 7 0.02
ACGTcount: A:0.30, C:0.26, G:0.25, T:0.19
Consensus pattern (227 bp):
ATGCAGATCTTCGTCAAGACCCTGACCGGAAAACCATAACCTTGGAAGTCGAGAGCTCCGATACG
ATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCGGATCAGCAGAGGCTCAT
ATTCGCCGGAAAACAGCTCGAAGACGGCCGGACTTTGGCCGATTACAACATCCAGAAGGAATCAA
CCCTCCACCTCGTCCTCAGGCTTCGTGGAGGC
Found at i:3627258 original size:21 final size:21
Alignment explanation
Indices: 3627234--3627280 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
3627224 ATATTACTTT
3627234 TTTTAGATAGTTTTTAAATTA
1 TTTTAGATAGTTTTTAAATTA
*** *
3627255 TTTTTTTTATTTTTTAAATTA
1 TTTTAGATAGTTTTTAAATTA
3627276 TTTTA
1 TTTTA
3627281 AAATTAATCT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (21 bp):
TTTTAGATAGTTTTTAAATTA
Found at i:3627259 original size:12 final size:12
Alignment explanation
Indices: 3627244--3627279 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
3627234 TTTTAGATAG
3627244 TTTTTAAATTAT
1 TTTTTAAATTAT
3627256 TTTTT---TTAT
1 TTTTTAAATTAT
3627265 TTTTTAAATTAT
1 TTTTTAAATTAT
3627277 TTT
1 TTT
3627280 AAAATTAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
9 9 0.43
12 12 0.57
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTTAAATTAT
Found at i:3628666 original size:3 final size:3
Alignment explanation
Indices: 3628655--3628692 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
3628645 TTTTTTCATT
**
3628655 TTA TT- TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
3628693 ATATATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:3630117 original size:2 final size:2
Alignment explanation
Indices: 3630110--3630135 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3630100 TCATAAATAA
3630110 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3630136 TTGTTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3630384 original size:132 final size:126
Alignment explanation
Indices: 3630205--3630443 Score: 363
Period size: 132 Copynumber: 1.8 Consensus size: 126
3630195 AATGTTTTAA
* *
3630205 TATTTATTTATTTTTTATATCGAAGAAAAGAGCTATCTTAAGGCACCTAGAA-TCCCTTTTCTGA
1 TATTTATTTATTTTTTATATCGAAAAAAAGAGCTATCTTAAGGCACCTAGAAGT-CATTTTCTGA
*
3630269 TATTTTTAAATAAATAAATATCTTATTATATTAAAATAAATTATTTTTTTAAGAAAATGTTTTGG
65 TATTTCTAAATAAATAAATATCTTATTA-A-T-AAATAAA-TATTTTTTTAAGAAAATGTTTTGG
3630334 T
126 T
*
3630335 TATTTATTTATTTTTTAATATCGAAAAAAAAGAGCTGTCTTAAGGCACCTAGAAGTCATTTTCTG
1 TATTTATTTATTTTTT-ATATCG-AAAAAAAGAGCTATCTTAAGGCACCTAGAAGTCATTTTCTG
*
3630400 ATATTTCTAAATAAATAAATATTTTATTAATAAATAAATATTTT
64 ATATTTCTAAATAAATAAATATCTTATTAATAAATAAATATTTT
3630444 AATAAATTTT
Statistics
Matches: 101, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
128 6 0.06
129 7 0.07
130 17 0.17
131 7 0.07
132 63 0.62
133 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.44
Consensus pattern (126 bp):
TATTTATTTATTTTTTATATCGAAAAAAAGAGCTATCTTAAGGCACCTAGAAGTCATTTTCTGAT
ATTTCTAAATAAATAAATATCTTATTAATAAATAAATATTTTTTTAAGAAAATGTTTTGGT
Found at i:3630447 original size:16 final size:18
Alignment explanation
Indices: 3630409--3630450 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
3630399 GATATTTCTA
3630409 AATAAATAAATATTTTATT
1 AATAAATAAATA-TTTATT
3630428 AATAAATAAATA-TT-TT
1 AATAAATAAATATTTATT
3630444 AATAAAT
1 AATAAAT
3630451 TTTCTTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 9 0.39
17 2 0.09
19 12 0.52
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AATAAATAAATATTTATT
Found at i:3632858 original size:23 final size:23
Alignment explanation
Indices: 3632832--3632879 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
3632822 ATAAAGTACA
*
3632832 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
3632855 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
3632878 AT
1 AT
3632880 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:3633529 original size:334 final size:335
Alignment explanation
Indices: 3632919--3633588 Score: 1270
Period size: 334 Copynumber: 2.0 Consensus size: 335
3632909 TTATACCGAT
*
3632919 AGCATTGCAAATTTACCTATTACATTATATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
1 AGCATTGCAAATTTACCTATTACATTATATTATATTGAAAGTGTACATACTTTTTATAAAAAGGA
*
3632984 TCGATATTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTC
66 TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTC
*
3633049 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTA
131 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTATTTTGATATTTTA
* *
3633114 TAAAATATTATTTAGAATTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATT
196 TAAAATAATATTTAGAATTTTTAATTTAATAATAATATATATCGTAACGAAAAAAATAAATCATT
3633179 AGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTT
261 AGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTT
3633244 TTCCACAGTG
326 TTCCACAGTG
*
3633254 AGCATTGCAAATTTACCTATTACATTATATTATATTGAAAGTGTATATACTTTTTATAAAAAGGA
1 AGCATTGCAAATTTACCTATTACATTATATTATATTGAAAGTGTACATACTTTTTATAAAAAGGA
3633319 TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTC
66 TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTC
3633383 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTATTTTGATATTTTA
131 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTATTTTGATATTTTA
3633448 TAAAATAATATTTAGAATTTTTAATTTAATAATAATATATATCGTAACGAAAAAAATAAATCATT
196 TAAAATAATATTTAGAATTTTTAATTTAATAATAATATATATCGTAACGAAAAAAATAAATCATT
3633513 AGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTT
261 AGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTT
*
3633578 TTCTACAGTG
326 TTCCACAGTG
3633588 A
1 A
3633589 AAAAAATATG
Statistics
Matches: 328, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
334 228 0.70
335 100 0.30
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.43
Consensus pattern (335 bp):
AGCATTGCAAATTTACCTATTACATTATATTATATTGAAAGTGTACATACTTTTTATAAAAAGGA
TCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTC
CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTATTTTGATATTTTA
TAAAATAATATTTAGAATTTTTAATTTAATAATAATATATATCGTAACGAAAAAAATAAATCATT
AGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTT
TTCCACAGTG
Found at i:3633694 original size:23 final size:23
Alignment explanation
Indices: 3633631--3633703 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 23
3633621 ACACTTTACA
* *
3633631 ATATAACCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* * *
3633654 ATATAAACGATACATATTATATT
1 ATATAAACGCTACCTATTACATT
** *
3633677 ATATAAGGGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
3633700 ATAT
1 ATAT
3633704 GTTTACCTAT
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:3634106 original size:25 final size:25
Alignment explanation
Indices: 3634049--3634114 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
3634039 CACTCAAAAG
*
3634049 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
3634074 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
3634099 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
3634115 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:3635688 original size:33 final size:33
Alignment explanation
Indices: 3635651--3635716 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
3635641 CATCTTAATA
* *
3635651 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCATTCACCACT
* * *
3635684 TCACCCCTCAATACCTCTACTTCATTCACCACT
1 TCACCCCTCAACACCCCAACTTCATTCACCACT
3635717 CCATCTATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.24, C:0.47, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCATTCACCACT
Found at i:3635790 original size:21 final size:21
Alignment explanation
Indices: 3635750--3635814 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
3635740 CCCCTTATGC
* *
3635750 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
3635771 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
* *
3635792 -TGATCAAGTTTCTCTTCGACT
1 CT-CTCGAGTTTCTCTTCGACT
3635813 CT
1 CT
3635815 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.40
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:3638068 original size:17 final size:18
Alignment explanation
Indices: 3638046--3638088 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
3638036 ATATATCCGG
3638046 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
3638063 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
3638083 TATCAT
1 TATCAT
3638089 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:3638106 original size:20 final size:19
Alignment explanation
Indices: 3638051--3638097 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
3638041 TCCGGTATCA
3638051 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
3638070 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
3638091 TTTTACC
1 TTTTACC
3638098 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:3638245 original size:20 final size:20
Alignment explanation
Indices: 3638219--3638264 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
3638209 CACTTTTAAA
3638219 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
3638238 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
3638259 TTTACC
1 TTTACC
3638265 TGGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:3642649 original size:121 final size:121
Alignment explanation
Indices: 3642518--3642760 Score: 486
Period size: 121 Copynumber: 2.0 Consensus size: 121
3642508 GGAGCAACGA
3642518 AAAAGTAGTTTCCGACAGACGTGTGATTTGTAAAAGAGTGACGATGATGGAAAATAGATGAAGAT
1 AAAAGTAGTTTCCGACAGACGTGTGATTTGTAAAAGAGTGACGATGATGGAAAATAGATGAAGAT
3642583 GTTGCGATGAAGACGATGAGCAAAATTGTTATGAAAGTTCGAGACTCGTCATACGG
66 GTTGCGATGAAGACGATGAGCAAAATTGTTATGAAAGTTCGAGACTCGTCATACGG
3642639 AAAAGTAGTTTCCGACAGACGTGTGATTTGTAAAAGAGTGACGATGATGGAAAATAGATGAAGAT
1 AAAAGTAGTTTCCGACAGACGTGTGATTTGTAAAAGAGTGACGATGATGGAAAATAGATGAAGAT
3642704 GTTGCGATGAAGACGATGAGCAAAATTGTTATGAAAGTTCGAGACTCGTCATACGG
66 GTTGCGATGAAGACGATGAGCAAAATTGTTATGAAAGTTCGAGACTCGTCATACGG
3642760 A
1 A
3642761 GAAGGAACAT
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 122 1.00
ACGTcount: A:0.37, C:0.11, G:0.28, T:0.25
Consensus pattern (121 bp):
AAAAGTAGTTTCCGACAGACGTGTGATTTGTAAAAGAGTGACGATGATGGAAAATAGATGAAGAT
GTTGCGATGAAGACGATGAGCAAAATTGTTATGAAAGTTCGAGACTCGTCATACGG
Found at i:3644016 original size:45 final size:45
Alignment explanation
Indices: 3643960--3644064 Score: 201
Period size: 45 Copynumber: 2.3 Consensus size: 45
3643950 TGCATCAATC
3643960 CATGCATCGATGCACCATGAATTAAATTGAACATCGAATGCATTT
1 CATGCATCGATGCACCATGAATTAAATTGAACATCGAATGCATTT
*
3644005 CATGCATCGATGCACCATGAATTAAATTGAACATTGAATGCATTT
1 CATGCATCGATGCACCATGAATTAAATTGAACATCGAATGCATTT
3644050 CATGCATCGATGCAC
1 CATGCATCGATGCAC
3644065 TTACCATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (45 bp):
CATGCATCGATGCACCATGAATTAAATTGAACATCGAATGCATTT
Found at i:3644130 original size:57 final size:56
Alignment explanation
Indices: 3644068--3644176 Score: 148
Period size: 56 Copynumber: 1.9 Consensus size: 56
3644058 GATGCACTTA
*
3644068 CCATGCACCGATGCACTGAGGAT-TTTATGAAAACATCGAATGCATTTGATGCACCAG
1 CCATGCACCGATGCACTGAGGATATTT-TG-AAACATCGAATGCACTTGATGCACCAG
* ** *
3644125 CCATGCATCGATGCACTTTGGCTATTTTGAAACATCGAATGCACTTGATGCA
1 CCATGCACCGATGCACTGAGGATATTTTGAAACATCGAATGCACTTGATGCA
3644177 TCGATGCACT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 22 0.48
57 21 0.46
58 3 0.07
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (56 bp):
CCATGCACCGATGCACTGAGGATATTTTGAAACATCGAATGCACTTGATGCACCAG
Found at i:3644185 original size:17 final size:19
Alignment explanation
Indices: 3644157--3644205 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
3644147 TATTTTGAAA
3644157 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
3644175 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
3644194 CACCGATGCACT
1 CATCGATGCACT
3644206 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:3651651 original size:21 final size:21
Alignment explanation
Indices: 3651609--3651652 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
3651599 ACTCTGGGAG
* *
3651609 CTAGTTCCTCACGAGCTGCTC
1 CTAGCTCCTCACGAGCTCCTC
* *
3651630 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCACGAGCTCCTC
3651651 CT
1 CT
3651653 CCTCCTCCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.43, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGCTCCTCACGAGCTCCTC
Found at i:3652894 original size:19 final size:19
Alignment explanation
Indices: 3652823--3652893 Score: 115
Period size: 19 Copynumber: 3.7 Consensus size: 19
3652813 AATGCATTTG
*
3652823 ATGCATCGATGCACCAACC
1 ATGCATCGATGCACCAGCC
3652842 ATGCATCGATGCACCAGCC
1 ATGCATCGATGCACCAGCC
* *
3652861 ATGCATCGATGCACTAGCT
1 ATGCATCGATGCACCAGCC
3652880 ATGCATCGATGCAC
1 ATGCATCGATGCAC
3652894 TCTGGCTATT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 49 1.00
ACGTcount: A:0.28, C:0.32, G:0.20, T:0.20
Consensus pattern (19 bp):
ATGCATCGATGCACCAGCC
Found at i:3655512 original size:24 final size:23
Alignment explanation
Indices: 3655485--3655535 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
3655475 ACATGTCCAT
3655485 GAACACATTCATGAACATATAAAC
1 GAACACATTCATGAACAT-TAAAC
** * *
3655509 GAACATGTTCGTGAACATTAAAT
1 GAACACATTCATGAACATTAAAC
3655532 GAAC
1 GAAC
3655536 GAACATGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.24
Consensus pattern (23 bp):
GAACACATTCATGAACATTAAAC
Found at i:3658201 original size:616 final size:612
Alignment explanation
Indices: 3657428--3658763 Score: 1745
Period size: 616 Copynumber: 2.2 Consensus size: 612
3657418 CTTGCACTGA
* * * *
3657428 TATGGAGAAACCAAAGACGAGAAAGAAGAAAACTTGCACTTCCGAGTCATCTTCCTCGAAATCTC
1 TATGGAGAAACCAAA-AAGAGAAAGAAGAGAAGTTCCACTTCCGAGTCATCTTCCTCGAAATCTC
* * * * * * * *
3657493 AAAGATTGTCCAAGAC-AAAGGAAACATCTACACAATCGGGTTCGTTATCTACTCAATCAGTTTC
65 AACGATTATCAAAGACTAAA-GAAACATCTACTCAATTGGGTTCATCATCTACTCAATCAGCTTC
** * * *
3657557 ATCATTGAACTTCAAAATATACAGATCATCATGCATGATTATTTCTTACTAATGCATTTAAGATT
129 ATCATCCAACTACAAAATATAAAGATCATCATGCATGATTATTTCTTACTAATACATTTAAGATT
* *
3657622 CCCATAAACACAACAAAGTTGAAGTCAATTTCATTAATATTTTGTTACAGGTATTGATCAATCAG
194 CCCATAAACACAACAAAGTCGAAGTCAATTTCATTAATATTTTGTTACAGGTATTGATCAATCAA
* * *
3657687 TGGGATCTGAA-CTAGAAACAGAGAAGATGACAAAACAATCTTGCCTTGATCTTCCAAATGTTAC
259 TGGAATCTGAAGC-AGAAACAGAGAAGATGACAAAACAATCTTGCATTGATCTTCCAAATGTTAA
3657751 AGAGAAACGAAAAAGAAGAAGGAAGAGCTCTTCCACTGCTGAGTCTTCTTCTTCTTCGAA-ATAT
323 AGAGAAACG--AAA-AAGAAGGAAGAGCTCTTCCACTGCTGAGTCTTCTTCTTCTTC-AACATAT
* * * *
3657815 AAACGATT-ATCCAAGATGAATAAAATATCTTCTCAATTGGGTTTGTCACTAGACTTCAAAATAT
384 AAACGATTAAT-CAAGATGAAGAAAATATCTACACAATTAGGTTTGTCACTAGACTTC-AAA-AT
* *
3657879 GAAGATCATCATGCATGATTA-TTCTATATTTAAGAT-TCTT-A-T-T-AACATAAGAAAGTCGA
446 -AAGATCATCATGCATGATTATTTCT-TA-TTAAAATAT-TTAATTCTCAACATAACAAAGT-GA
* * * * *
3657938 AA-TCAATTTCATTATTATTTTTTGGT-ACAGATATTGATCAATTAATTGGATCTGAACGAGCAA
506 AAGTCAATTTCATTAATATTTTTT-ATCACAGATATTGATCAATTAATGGGATCTGAACCAACAA
*
3658001 CAGAGAAGATGAAAAACCAGTCTTGCACTGATCTTCCAAATGT
570 CAGAGAAGATGAAAAACCAATCTTGCACTGATCTTCCAAATGT
*
3658044 TATGGAGAAACCAAAAAGGAGAAAGAAGAGAAGTTCCACTTCCGAGTCATCTTCCTTGAAATCTC
1 TATGGAGAAACCAAAAA-GAGAAAGAAGAGAAGTTCCACTTCCGAGTCATCTTCCTCGAAATCTC
* * * * *
3658109 AGCGATTATCGAAGACTAAAGAAACATCTATTCAATTGGGTTCATCATGTACTTAATCAGCTTCA
65 AACGATTATCAAAGACTAAAGAAACATCTACTCAATTGGGTTCATCATCTACTCAATCAGCTTCA
* *
3658174 TCATCCAACTACAAAATATAAAGATCATCATGCATGATTATTTCTTACTGATATATTTAAGATTC
130 TCATCCAACTACAAAATATAAAGATCATCATGCATGATTATTTCTTACTAATACATTTAAGATTC
* * *
3658239 TCATAAACACAACAAAGTCGAAGTGAATTTTATTAATATTTTGTTACAGGTATTGATCAATCAAT
195 CCATAAACACAACAAAGTCGAAGTCAATTTCATTAATATTTTGTTACAGGTATTGATCAATCAAT
* * * * *
3658304 GGAATCTGAAGCAGAAGCAGAGAAGATGAGAAACCAGTCTTGCATTGATCTTTCAAATGTTAAAG
260 GGAATCTGAAGCAGAAACAGAGAAGATGACAAAACAATCTTGCATTGATCTTCCAAATGTTAAAG
* *
3658369 AGAAACGAAAAAGAAGGAAGAGCTCTTCCACTTCTGAGTCTTTTTCTTCTTCAACATATAAACGA
325 AGAAACGAAAAAGAAGGAAGAGCTCTTCCACTGCTGAGTCTTCTTCTTCTTCAACATATAAACGA
3658434 TTAATCAAGATGAAGAAAATATCTACACAATTAGGTTTGTCACTAGACTTCAAAATAAGATCATC
390 TTAATCAAGATGAAGAAAATATCTACACAATTAGGTTTGTCACTAGACTTCAAAATAAGATCATC
*
3658499 ATGCATGATTATTTCTTATTAAAATATTTAAGTTTCTCAACATAACAAAGTGAAAGTCAATTTTA
455 ATGCATGATTATTTCTTATTAAAATATTTAA--TTCTCAACATAACAAAGTGAAAGTCAATTTCA
*
3658564 TTAATATTTTTTATCACAGATATTGATCAATTAATGGGATCTGAACCAACAACGGAGAAGATGAA
518 TTAATATTTTTTATCACAGATATTGATCAATTAATGGGATCTGAACCAACAACAGAGAAGATGAA
* *
3658629 AAACCAATCTTGCACTGATGTTTCAAATGT
583 AAACCAATCTTGCACTGATCTTCCAAATGT
* * * * * * *
3658659 CACGGA-AGAA-C-GAAAGAGAAGGAAGAGAAGTTCCA-TTGCCAAGTCTTCTTCCTCCAAATCT
1 TATGGAGA-AACCAAAAAGAGAAAGAAGAGAAGTTCCACTT-CCGAGTCATCTTCCTCGAAATCT
* * *
3658720 CCATC-ATTATCAAAGA-TGAAGGCAACATCTACTCAATTGGGTTC
64 -CAACGATTATCAAAGACT-AAAGAAACATCTACTCAATTGGGTTC
3658764 GTCACCAGAC
Statistics
Matches: 633, Mismatches: 68, Indels: 42
0.85 0.09 0.06
Matches are distributed among these distances:
609 8 0.01
610 24 0.04
611 9 0.01
612 76 0.12
613 101 0.16
614 13 0.02
615 111 0.18
616 287 0.45
617 4 0.01
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (612 bp):
TATGGAGAAACCAAAAAGAGAAAGAAGAGAAGTTCCACTTCCGAGTCATCTTCCTCGAAATCTCA
ACGATTATCAAAGACTAAAGAAACATCTACTCAATTGGGTTCATCATCTACTCAATCAGCTTCAT
CATCCAACTACAAAATATAAAGATCATCATGCATGATTATTTCTTACTAATACATTTAAGATTCC
CATAAACACAACAAAGTCGAAGTCAATTTCATTAATATTTTGTTACAGGTATTGATCAATCAATG
GAATCTGAAGCAGAAACAGAGAAGATGACAAAACAATCTTGCATTGATCTTCCAAATGTTAAAGA
GAAACGAAAAAGAAGGAAGAGCTCTTCCACTGCTGAGTCTTCTTCTTCTTCAACATATAAACGAT
TAATCAAGATGAAGAAAATATCTACACAATTAGGTTTGTCACTAGACTTCAAAATAAGATCATCA
TGCATGATTATTTCTTATTAAAATATTTAATTCTCAACATAACAAAGTGAAAGTCAATTTCATTA
ATATTTTTTATCACAGATATTGATCAATTAATGGGATCTGAACCAACAACAGAGAAGATGAAAAA
CCAATCTTGCACTGATCTTCCAAATGT
Found at i:3658797 original size:295 final size:296
Alignment explanation
Indices: 3657565--3658991 Score: 1024
Period size: 295 Copynumber: 4.7 Consensus size: 296
3657555 TCATCATTGA
* ** *
3657565 ACTTCAAAATATACAGATCATCATGCATGATTATTTCTTACTAATGCATTTAAGATTCCCATAAA
1 ACTT-AAAATATA-AGATCATCATGCATGATTATTTCTTATTAATATATTTAAGATT-TC-TAAA
* * * *
3657630 CACAACAAAGTTG-AAGTCAATTTCATTAATATTTTGTTACAGGTATTGATCAATCAGTGGGATC
62 CATAACAAAGTCGAAAGTCAATTTTATTAATATTTTGTTACAGGTATTGATCAATCAATGGGATC
* * * * * *
3657694 TGAACTAGA-AACAGAGAAGATGACAAAACAATCTTGC-CTTGATCTTCCAAATGTTACAG-AGA
127 TGAACCA-ACAACAGAGAAGATGAGAAACCAGTCTTGCAC-TGATCTTTCAAATGTTACGGAAGA
** * ** *
3657756 AACGAAAAAGAAGAAGGAAGAGCTCTTCCACTGCTGAGTCTTCTTCTTCTTCGAA-ATATAAACG
190 AACG--AAA-AAGAAGGAAGAGAACTTCCACTTCCAAGTCTTCTTC-TC-TCCAACATATAAACG
* * * * * * *
3657820 ATT-ATCCAAGATGAATAAAATATCTTCTCAATTGGGTTTGTCACTAG
250 ATTAAT-CAAGATGAAGAAAACATCTACACAATTAGGTTCGTCACCAG
3657867 ACTTCAAAATATGAAGATCATCATGCATGATTA-TTC-------TATATTTAAGA-TTCTTATTA
1 ACTT-AAAATAT-AAGATCATCATGCATGATTATTTCTTATTAATATATTTAAGATTTC-TA--A
* * * * * * *
3657923 ACATAAGAAAGTCGAAA-TCAATTTCATTATTATTTTTTGGTACAGATATTGATCAATTAATTGG
61 ACATAACAAAGTCGAAAGTCAATTTTATTA--ATATTTTGTTACAGGTATTGATCAATCAATGGG
* * * * *
3657987 ATCTGAACGAGCAACAGAGAAGATGAAAAACCAGTCTTGCACTGATCTTCCAAATGTTATGG-AG
124 ATCTGAACCAACAACAGAGAAGATGAGAAACCAGTCTTGCACTGATCTTTCAAATGTTACGGAAG
* * * * * ** * * *
3658051 AAACCAAAAAGGAGAAAGAAGAGAAGTTCCACTTCCGAGTCATCTTC-CTTGAA-ATCTCAGCGA
189 AAA-CGAAAA--AGAAGGAAGAGAACTTCCACTTCCAAGTCTTCTTCTCTCCAACATATAAACGA
* * * *
3658114 TT-ATCGAAGACTAAAGAAACATCTATTCAATTGGGTTCATCATGTACTTAATCAGCTTCATCAT
251 TTAATC-AAGA-TGAAGAAA-A-C-A-TC--------T-A-C----AC--AATTAGGTTCGTCA-
3658178 CCA-
293 CCAG
* * *
3658181 ACTACAAAATATAAAGATCATCATGCATGATTATTTCTTACTGATATATTTAAGATTCTCATAAA
1 ACT-TAAAATAT-AAGATCATCATGCATGATTATTTCTTATTAATATATTTAAGATT-TC-TAAA
* * *
3658246 CACAACAAAGTCG-AAGTGAATTTTATTAATATTTTGTTACAGGTATTGATCAATCAATGGAATC
62 CATAACAAAGTCGAAAGTCAATTTTATTAATATTTTGTTACAGGTATTGATCAATCAATGGGATC
* * * **
3658310 TGAAGCAGA-AGCAGAGAAGATGAGAAACCAGTCTTGCATTGATCTTTCAAATGTTAAAG-AGAA
127 TGAACCA-ACAACAGAGAAGATGAGAAACCAGTCTTGCACTGATCTTTCAAATGTTACGGAAGAA
** ** * *
3658373 ACGAAAAAGAAGGAAGAGCTCTTCCACTTCTGAGTCTTTTTCTTCTTCAACATATAAACGATTAA
191 ACGAAAAAGAAGGAAGAGAACTTCCACTTCCAAGTCTTCTTC-TCTCCAACATATAAACGATTAA
* * *
3658438 TCAAGATGAAGAAAATATCTACACAATTAGGTTTGTCACTAG
255 TCAAGATGAAGAAAACATCTACACAATTAGGTTCGTCACCAG
* * *
3658480 ACTTCAAA-ATAAGATCATCATGCATGATTATTTCTTATTAAAATATTTAAG-TTTCTCAACATA
1 ACTTAAAATATAAGATCATCATGCATGATTATTTCTTATTAATATATTTAAGATTTCTAAACATA
* * *
3658543 ACAAAGT-GAAAGTCAATTTTATTAATATTTTTTATCACAGATATTGATCAATTAATGGGATCTG
66 ACAAAGTCGAAAGTCAATTTTATTAATATTTTGT-T-ACAGGTATTGATCAATCAATGGGATCTG
* * * * *
3658607 AACCAACAACGGAGAAGATGAAAAACCAATCTTGCACTGATGTTTCAAATGTCACGGAAG-AACG
129 AACCAACAACAGAGAAGATGAGAAACCAGTCTTGCACTGATCTTTCAAATGTTACGGAAGAAACG
* * * * *
3658671 AAAGAGAAGGAAGAGAAGTTCCA-TTGCCAAGTCTTCTTC-CTCCAA-ATCTCCATC-ATT-ATC
194 AAAAAGAAGGAAGAGAACTTCCACTT-CCAAGTCTTCTTCTCTCCAACATAT-AAACGATTAATC
** * *
3658731 AAAGATGAAGGCAACATCTACTCAATTGGGTTCGTCACCAG
257 -AAGATGAAGAAAACATCTACACAATTAGGTTCGTCACCAG
* * *
3658772 ACATTAAAATATAGAGATAATCATGCATGATTATTTGTTATTAATGTATTTAAGATATT-TATGA
1 AC-TTAAAATATA-AGATCATCATGCATGATTATTTCTTATTAATATATTTAAGAT-TTCTA--A
* * * *
3658836 AC-TCAACAAAGTCGAAA-TCAA-TTTAGTACTGTTTTGTTACAGGTATTGATCAATCGATGGGA
61 ACAT-AACAAAGTCGAAAGTCAATTTTATTAATATTTTGTTACAGGTATTGATCAATCAATGGGA
** * * *
3658898 TCTGAACTGACAACAGATG-AGATGAGTAATCAGTCTTGCACTAATCTTTCAAATGTTACGG-AG
125 TCTGAACCAACAACAGA-GAAGATGAGAAACCAGTCTTGCACTGATCTTTCAAATGTTACGGAAG
* *
3658961 AAATGAAAAAGGAGAAAGAAGAGAACTTCCA
189 AAACG-AAAA--AGAAGGAAGAGAACTTCCA
3658992 TATCCAGATT
Statistics
Matches: 900, Mismatches: 151, Indels: 152
0.75 0.13 0.13
Matches are distributed among these distances:
291 3 0.00
292 46 0.05
293 67 0.07
294 52 0.06
295 220 0.24
296 159 0.18
297 20 0.02
298 39 0.04
299 17 0.02
301 5 0.01
302 31 0.03
303 1 0.00
305 1 0.00
306 2 0.00
307 1 0.00
308 1 0.00
312 1 0.00
314 39 0.04
315 7 0.01
316 1 0.00
317 28 0.03
318 1 0.00
319 17 0.02
320 97 0.11
321 5 0.01
322 34 0.04
323 1 0.00
324 4 0.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (296 bp):
ACTTAAAATATAAGATCATCATGCATGATTATTTCTTATTAATATATTTAAGATTTCTAAACATA
ACAAAGTCGAAAGTCAATTTTATTAATATTTTGTTACAGGTATTGATCAATCAATGGGATCTGAA
CCAACAACAGAGAAGATGAGAAACCAGTCTTGCACTGATCTTTCAAATGTTACGGAAGAAACGAA
AAAGAAGGAAGAGAACTTCCACTTCCAAGTCTTCTTCTCTCCAACATATAAACGATTAATCAAGA
TGAAGAAAACATCTACACAATTAGGTTCGTCACCAG
Done.