Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10075380
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 26 of 42
Found at i:5582825 original size:20 final size:20
Alignment explanation
Indices: 5582800--5582890 Score: 63
Period size: 20 Copynumber: 5.0 Consensus size: 20
5582790 TAAATTAAAT
*
5582800 ATTAGATAGGATCAGTTTTA
1 ATTAGATAGAATCAGTTTTA
* *
5582820 ATTAGATAGAATCAATTTTT
1 ATTAGATAGAATCAGTTTTA
* *
5582840 ATT--CT---ATTAG--TT-
1 ATTAGATAGAATCAGTTTTA
* *
5582852 ATTAGATAGGATCATTTTTA
1 ATTAGATAGAATCAGTTTTA
5582872 ATTAGATAGAATCAGTTTT
1 ATTAGATAGAATCAGTTTT
5582891 TTATTCTATT
Statistics
Matches: 52, Mismatches: 11, Indels: 16
0.66 0.14 0.20
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 1 0.02
15 3 0.06
17 3 0.06
18 1 0.02
19 2 0.04
20 37 0.71
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.45
Consensus pattern (20 bp):
ATTAGATAGAATCAGTTTTA
Found at i:5582915 original size:53 final size:52
Alignment explanation
Indices: 5582799--5582943 Score: 263
Period size: 53 Copynumber: 2.8 Consensus size: 52
5582789 CTAAATTAAA
* *
5582799 TATTAGATAGGATCAGTTTTAATTAGATAGAATCAATTTTTATTCTATTAGT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCATTTTTTATTCTATTAGT
5582851 TATTAGATAGGATCATTTTTAATTAGATAGAATCAGTTTTTTATTCTATTAGT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCA-TTTTTTATTCTATTAGT
5582904 TATTAGATAGGATCATTTTTAATTAGATAGAATCATTTTT
1 TATTAGATAGGATCATTTTTAATTAGATAGAATCATTTTT
5582944 ATTATGTTGC
Statistics
Matches: 90, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
52 39 0.43
53 51 0.57
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.48
Consensus pattern (52 bp):
TATTAGATAGGATCATTTTTAATTAGATAGAATCATTTTTTATTCTATTAGT
Found at i:5582930 original size:20 final size:20
Alignment explanation
Indices: 5582905--5582944 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
5582895 TCTATTAGTT
*
5582905 ATTAGATAGGATCATTTTTA
1 ATTAGATAGAATCATTTTTA
5582925 ATTAGATAGAATCATTTTTA
1 ATTAGATAGAATCATTTTTA
5582945 TTATGTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (20 bp):
ATTAGATAGAATCATTTTTA
Found at i:5584535 original size:2 final size:2
Alignment explanation
Indices: 5584528--5584564 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
5584518 ATGATTCTTT
5584528 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
5584565 GGAGGGGGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:5590555 original size:10 final size:10
Alignment explanation
Indices: 5590540--5590568 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
5590530 TGATCGAAGC
5590540 CGTTCGTCCG
1 CGTTCGTCCG
5590550 CGTTCGTCCG
1 CGTTCGTCCG
5590560 CGTTCGTCC
1 CGTTCGTCC
5590569 TTTGAAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.41, G:0.28, T:0.31
Consensus pattern (10 bp):
CGTTCGTCCG
Found at i:5604488 original size:14 final size:14
Alignment explanation
Indices: 5604465--5604497 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
5604455 TAAAATTATA
*
5604465 TTAAATGATAATAT
1 TTAAACGATAATAT
5604479 TTAAACGATAATAT
1 TTAAACGATAATAT
5604493 TTAAA
1 TTAAA
5604498 AGAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (14 bp):
TTAAACGATAATAT
Found at i:5604694 original size:249 final size:250
Alignment explanation
Indices: 5604232--5604732 Score: 810
Period size: 263 Copynumber: 2.0 Consensus size: 250
5604222 GCTACTGCCA
5604232 AAAAAAAAAGAAAGAAAGAAAACTACTTACTTATGGACTTAAACCTAAGTAAACTATTTGATTAG
1 AAAAAAAAAGAAAGAAAGAAAACTACTTACTTATGGACTTAAACCTAAGTAAACTATTTGATTAG
5604297 GGACTTATTCATGGACTTTAATCTCAAATTAATACAAAAAAAATAAAATTAATTTTTTTTATATT
66 GGACTTATTCATGGACTTTAATCTCAAATTAATACAAAAAAAATAAAATTAATTTTTTTTATATT
5604362 TTTAGACAAAATTTAATATTTTTTCATGATTATAATTTAATGATTTTAACTTTTAATATTTTTTC
131 TTTAGACAAAATTTAATATTTTTTC------------T-ATGATTTTAACTTTTAATATTTTTTC
5604427 TTTATATAAAATACATATCAATTTATCATAAAATTATATTAAATGATAATATTTAAACGATAATA
183 TTTATATAAAATACATATCAATTTATCATAAAATTATATTAAATGATAATATTTAAACGATAATA
5604492 TTT
248 TTT
* * * *
5604495 AAAAGAAAATAAAGAAAGAAAACTACTTACTTATGTACTTAAACCTAAGTCAACTA-TTGATTAG
1 AAAAAAAAAGAAAGAAAGAAAACTACTTACTTATGGACTTAAACCTAAGTAAACTATTTGATTAG
5604559 GGACTTATTCATGGACTTTAATCTCAAATTAATACAAAAATAAAATAAAATTAA-TTTTTTTATA
66 GGACTTATTCATGGACTTTAATCTCAAATTAATAC-AAAA-AAAATAAAATTAATTTTTTTTATA
5604623 TTTTTAGACAAAATTTAATATTTTTTC-ATGATTTTAACTTTTAATATTTTTTCTTTATATAAAA
129 TTTTTAGACAAAATTTAATATTTTTTCTATGATTTTAACTTTTAATATTTTTTCTTTATATAAAA
5604687 TACATATCAATTTATCATAAAATTATATTAAATGATAATATTTAAA
194 TACATATCAATTTATCATAAAATTATATTAAATGATAATATTTAAA
5604733 AGAAAATTTT
Statistics
Matches: 232, Mismatches: 4, Indels: 18
0.91 0.02 0.07
Matches are distributed among these distances:
249 83 0.36
262 43 0.19
263 93 0.40
264 13 0.06
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.41
Consensus pattern (250 bp):
AAAAAAAAAGAAAGAAAGAAAACTACTTACTTATGGACTTAAACCTAAGTAAACTATTTGATTAG
GGACTTATTCATGGACTTTAATCTCAAATTAATACAAAAAAAATAAAATTAATTTTTTTTATATT
TTTAGACAAAATTTAATATTTTTTCTATGATTTTAACTTTTAATATTTTTTCTTTATATAAAATA
CATATCAATTTATCATAAAATTATATTAAATGATAATATTTAAACGATAATATTT
Found at i:5623986 original size:214 final size:213
Alignment explanation
Indices: 5623585--5624667 Score: 1289
Period size: 214 Copynumber: 5.1 Consensus size: 213
5623575 CACCTTTCTG
* * *** *
5623585 GGGAGGATTTAGGGTTTCATGATTATCCTCGAATGCTTTTTACGAACCTCATGCATTCTGTGTTT
1 GGGAGGATTTAGGGTTTCGTGATTATCCTCGAATGCTTTTTATGAACCTCGCACACTCTGTGTTT
* * * * *
5623650 AATTAATTCTAAGTGTTTCAGTGACTTAATCGAAT--TTCAGAATTATAGGTGTTATGGTGTTTG
66 GATTAATTCTAAGCGTTTCAATTACTT-ATCGAATGGTTCAGAATTATAGTTGTTATGGTGTTTG
* * * *
5623713 ATGAGAGCGAGAGTCATGGTTTAAGGATACCTTTCATAAAACCAGAGCTGTAGCTTTGTTAATAT
130 ATGAGAGCGAGGGTTATGATTTAAGGATACCTTTCATAAAACCAGAGCTGTAGCTTTGTTAATGT
* *
5623778 GAATAGATTTATTTGGCTG
195 GAATAGAGTTATTTGGCTA
* * * * * * *
5623797 GGGAGGATTTAGGGTTTTGTGGTTATCCTTGAATGCTTTTTACGATCCTCACACCCTCTGTGTTT
1 GGGAGGATTTAGGGTTTCGTGATTATCCTCGAATGCTTTTTATGAACCTCGCACACTCTGTGTTT
* ** * * * * *
5623862 GATTAATTCTAAACACTTCAATCACATTATCTAATGGTTCGGATTTATAGCTGTTATGGTGTTTG
66 GATTAATTCTAAGCGTTTCAATTAC-TTATCGAATGGTTCAGAATTATAGTTGTTATGGTGTTTG
* * *
5623927 ATGAGAGCAAGGGTCATGATTTAAGGATACCTTTCATAAAACCAGAGCTGCAGCTTTGTTAATGT
130 ATGAGAGCGAGGGTTATGATTTAAGGATACCTTTCATAAAACCAGAGCTGTAGCTTTGTTAATGT
* *
5623992 GAATAGAGTTATATGTCTA
195 GAATAGAGTTATTTGGCTA
* * * * * * *
5624011 GGGAGGACTTAGGGTTTCATGATTAACCTTGAATGCTTTTTATGAACCTTGCACATTCTGTGGTT
1 GGGAGGATTTAGGGTTTCGTGATTATCCTCGAATGCTTTTTATGAACCTCGCACACTCTGTGTTT
* * *
5624076 GA-TATATTCTAAGCGTTTCAGTTACTATATCAAATGGTTCGGAATTATAGTTGTTATGGTGTTT
66 GATTA-ATTCTAAGCGTTTCAATTACT-TATCGAATGGTTCAGAATTATAGTTGTTATGGTGTTT
* * *
5624140 GATGAGAGCCAGGGTTATGGTTGAAGGATACCTTT-AGTAAAACCAGAGCTGTAGCTTTGTTTAT
129 GATGAGAGCGAGGGTTATGATTTAAGGATACCTTTCA-TAAAACCAGAGCTGTAGCTTTG--T-T
5624204 GAATGTGAATAGAGTTATTTGGCTA
190 -AATGTGAATAGAGTTATTTGGCTA
* * *
5624229 GGGAGGATTTAGTGTTTCGTGATTATCCTCGAATGCTTTTTATGAACCTCGCGCACTCCGTGTTT
1 GGGAGGATTTAGGGTTTCGTGATTATCCTCGAATGCTTTTTATGAACCTCGCACACTCTGTGTTT
* * *
5624294 GATTGATTCTAAGCGTTTCGATTACTTTATCGAATGGTTCAAAATTATAGTTGTTATGGTGTTTG
66 GATTAATTCTAAGCGTTTCAATTAC-TTATCGAATGGTTCAGAATTATAGTTGTTATGGTGTTTG
* ** * * *
5624359 ATTTAGAATGAGGGTTACGTTTTAAGGATA-CTTTTAGTAAAACCAGAGCTGTAGCTTTGTTAAT
130 A-TGAGAGCGAGGGTTATGATTTAAGGATACCTTTCA-TAAAACCAGAGCTGTAGCTTTGTTAAT
5624423 GTGAATAGAGTTATTTGGCTA
193 GTGAATAGAGTTATTTGGCTA
* * * * * ** *
5624444 GGGAGGATTTAGGGTTTTGTG-TTATCCTCAAATGCTTGTTATGAACATTGTTCACTCAGTGTTT
1 GGGAGGATTTAGGGTTTCGTGATTATCCTCGAATGCTTTTTATGAACCTCGCACACTCTGTGTTT
* * ** *
5624508 GATTGATTTTAAGCGTTTTGATTACTTTATCGAATGGTTCCGAATTATAGTTGTTATGGTGTTTG
66 GATTAATTCTAAGCGTTTCAATTAC-TTATCGAATGGTTCAGAATTATAGTTGTTATGGTGTTTG
* * *
5624573 ATGAGA-CTGGGGGTTATCATTTAAGGATACCTTTCGTAAAACCAGAGCTGTAGCTTTGTTAATG
130 ATGAGAGC-GAGGGTTATGATTTAAGGATACCTTTCATAAAACCAGAGCTGTAGCTTTGTTAATG
5624637 TGAATAGAGTTATTTGGCTA
194 TGAATAGAGTTATTTGGCTA
5624657 GGGAGGATTTA
1 GGGAGGATTTA
5624668 AGAGTTTGTG
Statistics
Matches: 755, Mismatches: 100, Indels: 31
0.85 0.11 0.03
Matches are distributed among these distances:
212 80 0.11
213 86 0.11
214 358 0.47
215 43 0.06
216 2 0.00
217 2 0.00
218 137 0.18
219 47 0.06
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.39
Consensus pattern (213 bp):
GGGAGGATTTAGGGTTTCGTGATTATCCTCGAATGCTTTTTATGAACCTCGCACACTCTGTGTTT
GATTAATTCTAAGCGTTTCAATTACTTATCGAATGGTTCAGAATTATAGTTGTTATGGTGTTTGA
TGAGAGCGAGGGTTATGATTTAAGGATACCTTTCATAAAACCAGAGCTGTAGCTTTGTTAATGTG
AATAGAGTTATTTGGCTA
Found at i:5624488 original size:432 final size:426
Alignment explanation
Indices: 5623585--5624720 Score: 1356
Period size: 432 Copynumber: 2.6 Consensus size: 426
5623575 CACCTTTCTG
*
5623585 GGGAGGATTTAGGGTTTCATGATTATCCTCGAATGCTTTTTACGAACC-T-CATGCATTCTGTGT
1 GGGAGGATTTAGGGTTTCATGATTATCCTCGAATGCTTTTTATGAACCTTGCA--CATTCTGTGT
* * * *
5623648 TTAATTAATTCTAAGTGTTTCAGTGACTTAATCGAAT--TTCAGAATTATAGGTGTTATGGTGTT
64 TTGATTAATTCTAAGCGTTTCAGTTACTT-ATCGAATGGTTCAGAATTATAGTTGTTATGGTGTT
* *
5623711 TGATGAGAGCGAGAGTCATGGTTTAAGGATACCTTTCA-TAAAACCAGAGCTGTAGCTTTGTTAA
128 TGATGAGAGCGAGGGTTATGGTTTAAGGATACCTTT-AGTAAAACCAGAGCTGTAGCTTTGTTAA
* * * * * *
5623775 TATGAATAGATTTATTTGGCTGGGGAGGATTTAGGGTTTTGTGGTTATCCTTGAATGCTTTTTAC
192 TGTGAATAGAGTTATTTGGCTAGGGAGGATTTAGAG-TTTGTGGTTATCCTCGAATGCTTTTTAA
* * * * * * **
5623840 GATCCTCACACCCTCTGTGTTTGATTAATTCTAAACACTTCAATCACATTATCTAATGGTTCGGA
256 GAACCTCGCGCACTCCGTGTTTGATTAATTCTAAACACTTCAATCACATTATCGAATGGTTCAAA
* * *
5623905 TTTATAGCTGTTATGGTGTTTGATGAGAGCAAGGGTCATGATTTAAGGATACCTTTCATAAAACC
321 ATTATAGCTGTTATGGTGTTTGATGAGAACAAGGGTCACGATTTAAGGATACCTTTCATAAAACC
*
5623970 AGAGCTGCAGCTTTGTTAATGTGAATAGAGTTATATGTCTA
386 AGAGCTGCAGCTTTGTTAATGTGAATAGAGTTATATGGCTA
* * * *
5624011 GGGAGGACTTAGGGTTTCATGATTAACCTTGAATGCTTTTTATGAACCTTGCACATTCTGTGGTT
1 GGGAGGATTTAGGGTTTCATGATTATCCTCGAATGCTTTTTATGAACCTTGCACATTCTGTGTTT
* *
5624076 GA-TATATTCTAAGCGTTTCAGTTACTATATCAAATGGTTCGGAATTATAGTTGTTATGGTGTTT
66 GATTA-ATTCTAAGCGTTTCAGTTACT-TATCGAATGGTTCAGAATTATAGTTGTTATGGTGTTT
* *
5624140 GATGAGAGCCAGGGTTATGGTTGAAGGATACCTTTAGTAAAACCAGAGCTGTAGCTTTGTTTATG
129 GATGAGAGCGAGGGTTATGGTTTAAGGATACCTTTAGTAAAACCAGAGCTGTAGCTTTG--T-T-
* *
5624205 AATGTGAATAGAGTTATTTGGCTAGGGAGGATTTAGTGTTTCGTGATTATCCTCGAATGCTTTTT
190 AATGTGAATAGAGTTATTTGGCTAGGGAGGATTTAGAGTTT-GTGGTTATCCTCGAATGCTTTTT
* * * ** * * *
5624270 ATGAACCTCGCGCACTCCGTGTTTGATTGATTCTAAGCGTTTCGATTACTTTATCGAATGGTTCA
254 AAGAACCTCGCGCACTCCGTGTTTGATTAATTCTAAACACTTCAATCACATTATCGAATGGTTCA
* * ** * * *
5624335 AAATTATAGTTGTTATGGTGTTTGATTTAGAATGAGGGTTACGTTTTAAGGATA-CTTTTAGTAA
319 AAATTATAGCTGTTATGGTGTTTGA-TGAGAACAAGGGTCACGATTTAAGGATACCTTTCA-TAA
* *
5624399 AACCAGAGCTGTAGCTTTGTTAATGTGAATAGAGTTATTTGGCTA
382 AACCAGAGCTGCAGCTTTGTTAATGTGAATAGAGTTATATGGCTA
** * * * ** * *
5624444 GGGAGGATTTAGGGTTTTGTG-TTATCCTCAAATGCTTGTTATGAACATTGTTCACTCAGTGTTT
1 GGGAGGATTTAGGGTTTCATGATTATCCTCGAATGCTTTTTATGAACCTTGCACATTCTGTGTTT
* * * *
5624508 GATTGATTTTAAGCGTTT-TGATTACTTTATCGAATGGTTCCGAATTATAGTTGTTATGGTGTTT
66 GATTAATTCTAAGCGTTTCAG-TTAC-TTATCGAATGGTTCAGAATTATAGTTGTTATGGTGTTT
* ** *
5624572 GATGAGA-CTGGGGGTTATCATTTAAGGATACCTTTCGTAAAACCAGAGCTGTAGCTTTGTTAAT
129 GATGAGAGC-GAGGGTTATGGTTTAAGGATACCTTTAGTAAAACCAGAGCTGTAGCTTTGTTAAT
* * **
5624636 GTGAATAGAGTTATTTGGCTAGGGAGGATTTAAGAGTTTGTGGTCATCCACGAACACTTTTTAAG
193 GTGAATAGAGTTATTTGGCTAGGGAGGATTT-AGAGTTTGTGGTTATCCTCGAATGCTTTTTAAG
* * *
5624701 AACCTTGTGCTCTCCGTGTT
257 AACCTCGCGCACTCCGTGTT
5624721 CCACTATCTC
Statistics
Matches: 607, Mismatches: 84, Indels: 36
0.83 0.12 0.05
Matches are distributed among these distances:
425 2 0.00
426 81 0.13
427 3 0.00
428 151 0.25
429 7 0.01
430 2 0.00
431 6 0.01
432 269 0.44
433 86 0.14
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (426 bp):
GGGAGGATTTAGGGTTTCATGATTATCCTCGAATGCTTTTTATGAACCTTGCACATTCTGTGTTT
GATTAATTCTAAGCGTTTCAGTTACTTATCGAATGGTTCAGAATTATAGTTGTTATGGTGTTTGA
TGAGAGCGAGGGTTATGGTTTAAGGATACCTTTAGTAAAACCAGAGCTGTAGCTTTGTTAATGTG
AATAGAGTTATTTGGCTAGGGAGGATTTAGAGTTTGTGGTTATCCTCGAATGCTTTTTAAGAACC
TCGCGCACTCCGTGTTTGATTAATTCTAAACACTTCAATCACATTATCGAATGGTTCAAAATTAT
AGCTGTTATGGTGTTTGATGAGAACAAGGGTCACGATTTAAGGATACCTTTCATAAAACCAGAGC
TGCAGCTTTGTTAATGTGAATAGAGTTATATGGCTA
Found at i:5629504 original size:10 final size:10
Alignment explanation
Indices: 5629491--5629535 Score: 54
Period size: 10 Copynumber: 4.2 Consensus size: 10
5629481 ATGAAAAAGA
5629491 ATATAAAAAT
1 ATATAAAAAT
5629501 ATATAAAAAT
1 ATATAAAAAT
5629511 ATATATATAAAT
1 ATATA-A-AAAT
*
5629523 ATCATATAAAT
1 AT-ATAAAAAT
5629534 AT
1 AT
5629536 CATATATGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
10 15 0.48
11 7 0.23
12 6 0.19
13 3 0.10
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (10 bp):
ATATAAAAAT
Found at i:5629533 original size:11 final size:11
Alignment explanation
Indices: 5629497--5629541 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
5629487 AAGAATATAA
*
5629497 AAATAT-ATAA
1 AAATATCATAT
*
5629507 AAATATATATAT
1 AAATAT-CATAT
5629519 AAATATCATAT
1 AAATATCATAT
5629530 AAATATCATAT
1 AAATATCATAT
5629541 A
1 A
5629542 TGCTTAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
10 6 0.19
11 16 0.52
12 9 0.29
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (11 bp):
AAATATCATAT
Found at i:5637452 original size:700 final size:700
Alignment explanation
Indices: 5636113--5637516 Score: 2756
Period size: 700 Copynumber: 2.0 Consensus size: 700
5636103 ACTTGTTGCT
5636113 CAAGGGTATACTCAAGAAGAAGGCATAGACTATGATGAAACATACGCTCCCGTAGCTAGGATGGA
1 CAAGGGTATACTCAAGAAGAAGGCATAGACTATGATGAAACATACGCTCCCGTAGCTAGGATGGA
5636178 AGCAATTAGAATGTTATTAGCATTTGCATGTTTTCATGAATTTAAATTATATCAAATGGATGTTA
66 AGCAATTAGAATGTTATTAGCATTTGCATGTTTTCATGAATTTAAATTATATCAAATGGATGTTA
5636243 AAAGTGCATTTTTAAATGGTTTTATAAAGGAAGAAGTGTATGTGGAACAACCTCCAGGTTTTGAA
131 AAAGTGCATTTTTAAATGGTTTTATAAAGGAAGAAGTGTATGTGGAACAACCTCCAGGTTTTGAA
5636308 GATTCAAAATTTTCGGATCATGTTCTTAAATTGACCAAAGCGCTTTATGGTTTAAAACAAGCTCA
196 GATTCAAAATTTTCGGATCATGTTCTTAAATTGACCAAAGCGCTTTATGGTTTAAAACAAGCTCA
*
5636373 TAGAGCTTGGTATGAAAGATTGTCAAATTTTTTAATTGAAAAAGGTTTTTCAAATGGGAAAGTTG
261 TAGAGCTTGGTATGAAAGATTGTCAAATTTTTTAATTGAAAAAGGTTTTTCAAAAGGGAAAGTTG
5636438 ACACTACATTGTTTTTAAAGCACAAAGGTAAAGATTTATTAGTAGTTCAAATTTATGTTGGTGAT
326 ACACTACATTGTTTTTAAAGCACAAAGGTAAAGATTTATTAGTAGTTCAAATTTATGTTGGTGAT
5636503 ATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGCAAAGTGAATT
391 ATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGCAAAGTGAATT
5636568 CGAAATGAGCATGATGGAGGAGCTCTCATTTTTCTTGGGACTCCAAATCAAGCAAAGAAAAGATG
456 CGAAATGAGCATGATGGAGGAGCTCTCATTTTTCTTGGGACTCCAAATCAAGCAAAGAAAAGATG
5636633 GCATCTTCATAAATCAAGCTAAGTACGTCAAAGATATGCTCAAAAAGTTTGGACTGGAAAATGGC
521 GCATCTTCATAAATCAAGCTAAGTACGTCAAAGATATGCTCAAAAAGTTTGGACTGGAAAATGGC
5636698 AAACCTCACGACACTCCAATGAGCTCTTCAACAAAGCTTGACTTAGATGAAGGAGGTAAATGTGT
586 AAACCTCACGACACTCCAATGAGCTCTTCAACAAAGCTTGACTTAGATGAAGGAGGTAAATGTGT
5636763 AGATGTTAAATTATATAGGTCAATGATTGGCTCTTTGCTTTATCTAACTG
651 AGATGTTAAATTATATAGGTCAATGATTGGCTCTTTGCTTTATCTAACTG
5636813 CAAGGGTATACTCAAGAAGAAGGCATAGACTATGATGAAACATACGCTCCCGTAGCTAGGATGGA
1 CAAGGGTATACTCAAGAAGAAGGCATAGACTATGATGAAACATACGCTCCCGTAGCTAGGATGGA
* *
5636878 AGCAATTAGAATGTTATTAGTATTTGCATGTTTTCATGAATTTAAATTATATTAAATGGATGTTA
66 AGCAATTAGAATGTTATTAGCATTTGCATGTTTTCATGAATTTAAATTATATCAAATGGATGTTA
5636943 AAAGTGCATTTTTAAATGGTTTTATAAAGGAAGAAGTGTATGTGGAACAACCTCCAGGTTTTGAA
131 AAAGTGCATTTTTAAATGGTTTTATAAAGGAAGAAGTGTATGTGGAACAACCTCCAGGTTTTGAA
5637008 GATTCAAAA-TTTCTGGATCATGTTCTTAAATTGACCAAAGCGCTTTATGGTTTAAAACAAGCTC
196 GATTCAAAATTTTC-GGATCATGTTCTTAAATTGACCAAAGCGCTTTATGGTTTAAAACAAGCTC
5637072 ATAGAGCTTGGTATGAAAGATTGTCAAATTTTTTAATTGAAAAAGGTTTTTCAAAAGGGAAAGTT
260 ATAGAGCTTGGTATGAAAGATTGTCAAATTTTTTAATTGAAAAAGGTTTTTCAAAAGGGAAAGTT
5637137 GACACTACATTGTTTTTAAAGCACAAAGGTAAAGATTTATTAGTAGTTCAAATTTATGTTGGTGA
325 GACACTACATTGTTTTTAAAGCACAAAGGTAAAGATTTATTAGTAGTTCAAATTTATGTTGGTGA
*
5637202 TATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGTAAAGTGAAT
390 TATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGCAAAGTGAAT
5637267 TCGAAATGAGCATGATGGAGGAGCTCTCATTTTTCTTGGGACTCCAAATCAAGCAAAGAAAAGAT
455 TCGAAATGAGCATGATGGAGGAGCTCTCATTTTTCTTGGGACTCCAAATCAAGCAAAGAAAAGAT
5637332 GGCATCTTCATAAATCAAGCTAAGTACGTCAAAGATATGCTCAAAAAGTTTGGACTGGAAAATGG
520 GGCATCTTCATAAATCAAGCTAAGTACGTCAAAGATATGCTCAAAAAGTTTGGACTGGAAAATGG
5637397 CAAACCTCACGACACTCCAATGAGCTCTTCAACAAAGCTTGACTTAGATGAAGGAGGTAAATGTG
585 CAAACCTCACGACACTCCAATGAGCTCTTCAACAAAGCTTGACTTAGATGAAGGAGGTAAATGTG
5637462 TAGATGTTAAATTATATAGGTCAATGATTGGCTCTTTGCTTTATCTAACTG
650 TAGATGTTAAATTATATAGGTCAATGATTGGCTCTTTGCTTTATCTAACTG
5637513 CAAG
1 CAAG
5637517 TAGACCGGAC
Statistics
Matches: 699, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
699 4 0.01
700 695 0.99
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (700 bp):
CAAGGGTATACTCAAGAAGAAGGCATAGACTATGATGAAACATACGCTCCCGTAGCTAGGATGGA
AGCAATTAGAATGTTATTAGCATTTGCATGTTTTCATGAATTTAAATTATATCAAATGGATGTTA
AAAGTGCATTTTTAAATGGTTTTATAAAGGAAGAAGTGTATGTGGAACAACCTCCAGGTTTTGAA
GATTCAAAATTTTCGGATCATGTTCTTAAATTGACCAAAGCGCTTTATGGTTTAAAACAAGCTCA
TAGAGCTTGGTATGAAAGATTGTCAAATTTTTTAATTGAAAAAGGTTTTTCAAAAGGGAAAGTTG
ACACTACATTGTTTTTAAAGCACAAAGGTAAAGATTTATTAGTAGTTCAAATTTATGTTGGTGAT
ATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGCAAAGTGAATT
CGAAATGAGCATGATGGAGGAGCTCTCATTTTTCTTGGGACTCCAAATCAAGCAAAGAAAAGATG
GCATCTTCATAAATCAAGCTAAGTACGTCAAAGATATGCTCAAAAAGTTTGGACTGGAAAATGGC
AAACCTCACGACACTCCAATGAGCTCTTCAACAAAGCTTGACTTAGATGAAGGAGGTAAATGTGT
AGATGTTAAATTATATAGGTCAATGATTGGCTCTTTGCTTTATCTAACTG
Found at i:5639083 original size:31 final size:31
Alignment explanation
Indices: 5639045--5639169 Score: 225
Period size: 31 Copynumber: 4.0 Consensus size: 31
5639035 CCCGAAGAAC
*
5639045 CAGTCCATA-GATCCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
5639076 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
5639107 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
5639138 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
5639169 C
1 C
5639170 CCTAGACCCT
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
31 91 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.18
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:5639934 original size:64 final size:64
Alignment explanation
Indices: 5639826--5640046 Score: 234
Period size: 64 Copynumber: 3.5 Consensus size: 64
5639816 TAATGAAGGT
* * ** * ** *
5639826 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAATATATTCGATGTTGT-ATTATTACTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACGAATTGCATTCGATGTT-TCATTATTAATGGG
* * *
5639890 ATGCATCGATGCA-TGCCTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGGG
1 ATGCATCGATGCACT-ACTTATGCATCGATGCACGAATTGCATTCGATGTTTCATTATTAATGGG
* **
5639954 ATGCATCGATGCACTACTTATGCATCGATGCACGAATTGCATTCGATGTATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCACGAATTGCATTCGATGT-TTCATTATTAATGGG
**
5640017 AGTGCATCGATGCACTACCAATGCATCGAT
1 A-TGCATCGATGCACTACTTATGCATCGAT
5640047 ACACCTTCAA
Statistics
Matches: 134, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
63 4 0.03
64 125 0.93
65 5 0.04
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACGAATTGCATTCGATGTTTCATTATTAATGGG
Found at i:5643763 original size:31 final size:31
Alignment explanation
Indices: 5643725--5643910 Score: 347
Period size: 31 Copynumber: 6.0 Consensus size: 31
5643715 CCGAATGACT
*
5643725 AGTCCATA-GATCCCGAAGAACCTAGGTAAAC
1 AGTCCATATG-TCCCGAAGAACATAGGTAAAC
5643756 AGTCCATATGTCCCGAAGAACATAGGTAAAC
1 AGTCCATATGTCCCGAAGAACATAGGTAAAC
5643787 AGTCCATATGTCCCGAAGAACATAGGTAAAC
1 AGTCCATATGTCCCGAAGAACATAGGTAAAC
5643818 AGTCCATATGTCCCGAAGAACATAGGTAAAC
1 AGTCCATATGTCCCGAAGAACATAGGTAAAC
5643849 AGTCCATATGTCCCGAAGAACATAGGTAAAC
1 AGTCCATATGTCCCGAAGAACATAGGTAAAC
5643880 AGTCCATATGTCCCGAAGAACATAGGTAAAC
1 AGTCCATATGTCCCGAAGAACATAGGTAAAC
5643911 CCTCGACCCT
Statistics
Matches: 153, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
31 152 0.99
32 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
AGTCCATATGTCCCGAAGAACATAGGTAAAC
Found at i:5644675 original size:64 final size:64
Alignment explanation
Indices: 5644567--5644787 Score: 191
Period size: 64 Copynumber: 3.5 Consensus size: 64
5644557 TAATGAAGGT
* * * * * * *
5644567 ATGCATAGATGCACTACTGATGCATCGGTGTA-TAATATGTATTCGATGTTGT-ATTATTACTGG
1 ATGCATCGATGCACTACTTATGCATCGATGAACGAAT-TGCATTCGATGTT-TCATTATTAATGG
5644630 G
64 G
* * *
5644631 ATGCATCGATGCA-TGCCTTATGCATCGATGAACTAATTGCATTCGATGTTTCCTTATTAATGGG
1 ATGCATCGATGCACT-ACTTATGCATCGATGAACGAATTGCATTCGATGTTTCATTATTAATGGG
* * * * * **
5644695 ATGTATCGATGCACTACTTATGGATCGATGCACGAATTGCATTCGGTGTATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGAACGAATTGCATTCGATGT-TTCATTATTAATGGG
**
5644758 AGTGCATCGATGCACTACCAATGCATCGAT
1 A-TGCATCGATGCACTACTTATGCATCGAT
5644788 ACACCTTCAA
Statistics
Matches: 129, Mismatches: 22, Indels: 12
0.79 0.13 0.07
Matches are distributed among these distances:
63 4 0.03
64 116 0.90
65 9 0.07
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGAACGAATTGCATTCGATGTTTCATTATTAATGGG
Found at i:5645955 original size:20 final size:19
Alignment explanation
Indices: 5645928--5645988 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
5645918 CATTTTATTG
5645928 CAGAGGGAATCGATACCCC
1 CAGAGGGAATCGATACCCC
*
5645947 CATGAGGGAA-CTGATTCCCCC
1 CA-GAGGGAATC-GA-TACCCC
*
5645968 CACAGGGGAATCGATACCCC
1 CAGA-GGGAATCGATACCCC
5645988 C
1 C
5645989 TGGGGTTCTG
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
19 3 0.09
20 16 0.47
21 14 0.41
22 1 0.03
ACGTcount: A:0.28, C:0.34, G:0.25, T:0.13
Consensus pattern (19 bp):
CAGAGGGAATCGATACCCC
Found at i:5645987 original size:21 final size:21
Alignment explanation
Indices: 5645929--5645988 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
5645919 ATTTTATTGC
5645929 AGAGGGAATCGATA-CCCCCA
1 AGAGGGAATCGATACCCCCCA
* *
5645949 TGAGGGAA-CTGATTCCCCCCA
1 AGAGGGAATC-GATACCCCCCA
5645970 CAG-GGGAATCGATACCCCC
1 -AGAGGGAATCGATACCCCC
5645989 TGGGGTTCTG
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
19 1 0.03
20 10 0.31
21 19 0.59
22 2 0.06
ACGTcount: A:0.28, C:0.33, G:0.25, T:0.13
Consensus pattern (21 bp):
AGAGGGAATCGATACCCCCCA
Found at i:5653108 original size:6 final size:6
Alignment explanation
Indices: 5653097--5653122 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
5653087 CTGTTCTCCT
5653097 CCTTCC CCTTCC CCTTCC CCTTCC CC
1 CCTTCC CCTTCC CCTTCC CCTTCC CC
5653123 CCTCGATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
CCTTCC
Found at i:5657431 original size:10 final size:10
Alignment explanation
Indices: 5657416--5657444 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
5657406 TTGTGAACCA
5657416 CATCTGCAGG
1 CATCTGCAGG
5657426 CATCTGCAGG
1 CATCTGCAGG
5657436 CATCTGCAG
1 CATCTGCAG
5657445 CAGAAGAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (10 bp):
CATCTGCAGG
Found at i:5657663 original size:22 final size:22
Alignment explanation
Indices: 5657637--5657679 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
5657627 TAATAAATTA
5657637 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
5657659 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
5657680 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5657688 original size:22 final size:22
Alignment explanation
Indices: 5657639--5657687 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
5657629 ATAAATTATT
**
5657639 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
5657661 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5657684 TAAA
1 TAAA
5657688 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5657691 original size:54 final size:54
Alignment explanation
Indices: 5657627--5663457 Score: 2086
Period size: 54 Copynumber: 106.4 Consensus size: 54
5657617 ACAACTACAA
5657627 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* **
5657681 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATAC
* *
5657739 TAATAAATTATTTAAAATAAATCAATCCATATTCTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* * **
5657793 TAATAAATTATTTAAAATAAATCAATCCATA----CAACTACAAT-AATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATA-AATCAATCCATAC
* * * * ** * *
5657842 -AAT-CATTATATTAAAATAAATCAATTCATA--CT--AATAAAGT-ATTTAAAAT
1 TAATAAATTAT-TTAAAATAAATCAATCCATATTTTAAAATAAA-TCAATCCATAC
*
5657891 TAATCAATTCATATTCCAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCA
1 TAATAAATT-AT-TT--AAAATAAATCAA-TC---C--AT--A-T-TTTAAAATAAATCAATCCA
5657956 TATTC
52 TA--C
* * * * *
5657961 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
5658013 -AACT--A-TA---ATAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** * ** * **
5658061 TAATAAATTATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
** ** * *
5658116 -AATCCA-TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT-C
1 TAATAAATTA-TTTAAAATAAATCAATCCATA-TTTTAAA--A--T-AAATCAATCCATAC
** * ** * **
5658174 T-AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
*
5658224 -AATACA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTA-TTTAAAATAAATCAA-TC---C--AT--A-T-TTTAAAATAAATCAATCCATAC
*
5658287 TAATAAATTATTTAAAATAAATCAATCCATATTATAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** *
5658341 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * * *
5658401 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCTTAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5658453 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
5658507 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5658555 TAATAAATTATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
* *
5658619 TAATAAATTATTTAAAATAAATCAATCCATATTATAAAATAAATCAATCCTTAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* * ** *
5658673 TAATAAATTATTTAAAATAAATCAATACATACAACTGCAATAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * * *
5658733 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCTTAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
5658785 AAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAATTCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* **
5658839 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATAC
5658897 TAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
* * ** *
5658961 TAATAAATTATTTAAAATAAATCAAATACA-ACTACAATAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATC-AATCCATATTTTAA-AATAAATCAATCCATA--C
* * * * * *
5659018 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATTCATATTCC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA---C
* * * * * *
5659073 AAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCATAC
1 -TAATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
5659124 -AACT--A-TA---ATAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** * ** * **
5659172 TAATAAATTATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
** ** * *
5659227 -AATCCA-TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT-C
1 TAATAAATTA-TTTAAAATAAATCAATCCATA-TTTTAAA--A--T-AAATCAATCCATAC
** * ** * **
5659285 T-AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
*
5659335 -AATACA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTA-TTTAAAATAAATCAA-TC---C--AT--A-T-TTTAAAATAAATCAATCCATAC
5659398 TAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
* *
5659462 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** * ** * **
5659510 TAATAAATTATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
** * ** *
5659565 -AATCCA-TATTTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTT
1 TAATAAATTA-TTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * * *
5659624 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCTTAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
** * ** * **
5659676 TAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
** ** * *
5659731 -AATCCA-TATTATAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATAC
1 TAATAAATTATT-TAAAATAAATCAATCCATA-TTTTAAA--A--T-AAATCAATCCATAC
* ** *
5659790 --ATACAA--CTGCAATAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAATA-AATTATTTAA-AATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5659842 TAATAAATTATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
** * * * ** **
5659905 TTTTAAAATAATT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAC
* * * *
5659960 -AACTACAA-TA-AT-AAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAA-TA-AATTATTTAAAATAAATCAAT-C-CAT--A-T-TTTAAAATAAATCAATCCATAC
5660018 TAATAAATTATTTAAAATAAATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
* *
5660082 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** *
5660130 TAATAAATTATTTAAAATAAATCAATTCATATTCCAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
5660184 TAATAAATTATTTAAAATAAATCAATCCATATTCTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** *
5660238 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * *
5660298 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5660350 TAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
* *
5660414 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** *
5660462 TAATAAATTATTTAAAATAAATCAATTCATATTCCAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
5660516 TAATAAATTATTTAAAATAAATCAATCCATATTCTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** *
5660570 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * * *
5660630 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATTCATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5660682 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
5660736 TATTAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
** *
5660790 TAATAAATTATTTAAAATAAATCAAAACATATTTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** * ** * **
5660844 TAATAAATTATTTAAAATAAAACAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
**
5660899 -AATTCA-TATTATAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATT-TAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
* *
5660962 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** * *
5661010 TAATAAATTATTTAAAATAAATCAATCCTTAATAATAAATTATTTAAAATAAATCAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCAT-ATTTTAAA--A--T-AAATCAATCCATAC
* ** *
5661069 T-AT--A-T-TTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * * *
5661124 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCTTAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
** * ** * **
5661176 TAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
* ** * * *
5661231 -AATACA-TATTATAAAATAAATCAATCCATACTAATACATTATTTAAAATAAATCAATAC
1 TAATAAATTATT-TAAAATAAATCAATCCATA-TTTTA-A--A-AT-AAATCAATCCATAC
* ** *
5661290 --ATACAA--CTGCAATAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAATA-AATTATTTAA-AATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5661342 TAATAAATTATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
* * * * ** ** *
5661405 T-TTCAAAATAATT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATATTT
1 TAAT-AAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATA--C
* * * * *
5661462 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5661514 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAAT-C---C
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *** * * *
5661564 --AT--A-T-TTTAAAATAAATCAATTCATACAACTACAAT-AATAAATCAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATAC
* * * ** *
5661611 -CAT--A-T-TTTAAAATAAATCAATTCATACAACTACAATAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * *
5661666 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
5661718 TAATAAAGTATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAA-TC---C--AT--A-T-TTTAAAATAAATCAATCCATAC
*
5661782 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5661830 TAATAAATTATTTAAAAT--A--AAT---TATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
5661877 TAATAAATTA-TT--AA-AAATAAAT---TATTTTAAAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA--C
* * * * * *
5661926 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCATATTT
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA--C
* * * * * *
5661980 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCTTAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
5662032 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAATTCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
5662086 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** * ** * **
5662140 TAATAAATTATTTAAAATAAATCAATCCACACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
**
5662195 -AATCCA-TATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
5662248 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
5662296 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
5662344 TAATAAATTATTTAAAATAAATCAATTCATACTAATAAAGTATTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAA-TC---C--AT--A-T-TTTAAAATAAATCAATCCATAC
** * ** * **
5662408 TAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
**
5662463 -AATTCA-TATTATAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATT-TAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
* *
5662526 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** * ** * **
5662574 T-ATAAATTATTTAAAA-AAATCAATCCTTACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
** * ***
5662627 -AATCTA-TATTTTAAATAAATCAATCCATACAACTACAATATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTA-AA-ATAAATCAATCCATAC
** * * * * * *
5662681 TTTTAAAATAATCAATTCATACTAATAAAT---TA-TTTAAAATAAATCAATCCTTAC
1 TAATAAATTATTTAA--AATA--AATCAATCCATATTTTAAAATAAATCAATCCATAC
** * ** * **
5662735 TAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
* ** * * *
5662790 -AATACA-TATTATAAAATAAATCAATCCATACTAATACATTATTTAAAATAAATCAATAC
1 TAATAAATTATT-TAAAATAAATCAATCCATA-TTTTA-A--A-AT-AAATCAATCCATAC
* ** *
5662849 --ATACAA--CTGCAATAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAATA-AATTATTTAA-AATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5662901 TAATAAATTATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
** * * * ** ** *
5662964 TTTTAAAATAATT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATA--C
* * * * *
5663021 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5663073 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATC-A---AT-C
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *** * * *
5663122 -AAT--A-T-TTTAAAATAAATCAATTCATACAACTACAAT-AATAAATCAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATAC
* * * ** * *
5663170 -CAT--A-T-TTTAAAATAAATCAATTCATACAACTACAATAATAAATCAATTCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * * *
5663225 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATACATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
5663277 TAATAAAGTATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAA-TC---C--AT--A-T-TTTAAAATAAATCAATCCATAC
*
5663341 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
5663389 TAATAAATTATTTAAAAT--A--AAT---TATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
5663436 TAATAAATTATTAAAAATAAAT
1 TAATAAATTATTTAAAATAAAT
5663458 TATTTTAAAA
Statistics
Matches: 4519, Mismatches: 651, Indels: 1218
0.71 0.10 0.19
Matches are distributed among these distances:
43 8 0.00
44 63 0.01
45 14 0.00
46 6 0.00
47 119 0.03
48 430 0.10
49 106 0.02
50 211 0.05
51 29 0.01
52 136 0.03
53 118 0.03
54 1694 0.37
55 184 0.04
56 82 0.02
57 68 0.02
58 402 0.09
59 53 0.01
60 78 0.02
61 8 0.00
62 136 0.03
63 134 0.03
64 399 0.09
65 10 0.00
66 1 0.00
67 2 0.00
68 15 0.00
69 3 0.00
70 1 0.00
71 1 0.00
72 8 0.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.34
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
Found at i:5657697 original size:32 final size:32
Alignment explanation
Indices: 5657659--5657769 Score: 155
Period size: 32 Copynumber: 3.7 Consensus size: 32
5657649 CAATCCATAT
5657659 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5657691 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5657721 --T--AATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5657749 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
5657770 TTCTAAAATA
Statistics
Matches: 69, Mismatches: 2, Indels: 16
0.79 0.02 0.18
Matches are distributed among these distances:
26 20 0.29
27 2 0.03
28 2 0.03
30 2 0.03
31 2 0.03
32 41 0.59
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:5657776 original size:22 final size:21
Alignment explanation
Indices: 5657747--5657791 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5657737 ACTAATAAAT
5657747 TATTTAAAATAAATCAATCCA
1 TATTTAAAATAAATCAATCCA
*
5657768 TATTCTAAAATAAATCAATTCA
1 TATT-TAAAATAAATCAATCCA
5657790 TA
1 TA
5657792 CTAATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5657934 original size:22 final size:22
Alignment explanation
Indices: 5657886--5657927 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
5657876 TAAAGTATTT
* * *
5657886 AAAATTAATCAATTCATATTCC
1 AAAATAAATCAATTCATACTCA
5657908 AAAATAAATCAATTCATACT
1 AAAATAAATCAATTCATACT
5657928 AATAAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATAAATCAATTCATACTCA
Found at i:5657945 original size:166 final size:164
Alignment explanation
Indices: 5657768--5663410 Score: 3364
Period size: 166 Copynumber: 34.3 Consensus size: 164
5657758 AATCAATCCA
*
5657768 TATTCTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAA
1 TATT-TAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAA-TA-AA
* * *
5657833 T-AATAAATCAAT-CATTATATTAAAATAAATCAATTCATACTAATAAAGTATTTAAAATTAATC
63 TAAATAAATCAATACATTAT-TTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATC
* *
5657896 AATTCATATTCCAAAATAAATCAATTCATACTAATAAAT
127 AATCCATATT-TAAAATAAATCAATTCATACTAATAAAT
* * * * * * **
5657935 TATTTAAAATAAATCAATCCATATTCTAAAATAAATCAATTCATACT-AATAAAT-TAT-TTA-A
1 TATTTAAAATAAATCAATCCATA--CT--AATAAAT-TATTTAAAATAAATCAATCCATACAATA
* * * * * * *
5657996 AATAAATCAATCCATACA--ACTATAATAATAAATCAATCCATATTTTAAAATAAATCAATTCAT
61 AATAAATAAATCAATACATTA-TTTAA-AATAAATCAATCCATA--CT--AATAAAT-TATTTAA
* *
5658059 ACT-AATAAAT---TATTTAAAATAAATCAATTCATACTAATAAAT
119 AATAAATCAATCCATATTTAAAATAAATCAATTCATACTAATAAAT
5658101 TATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATT
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AAT-AA--
5658156 ATTTAAAATAAATCAAT-C-TATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
62 A--T-AAATAAATCAATACAT-TA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
*
5658219 AAATCAATACATATTTTAAAATAAATCAATTCATACTAATAAAT
122 AAATCAATCCATA-TTTAAAATAAATCAATTCATACTAATAAAT
**
5658263 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTATAAAATA
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAAT-AAATA
* *
5658328 AATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AACTACA--A--T--AATA
65 AAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATA
5658386 AATCAATCCATATTTTAAAATAAATCAATTCATACTAATAAAT
123 AATCAATCCATA-TTTAAAATAAATCAATTCATACTAATAAAT
* ***
5658429 TATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATA
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAAT-AAATA
* * ** * * * * *
5658494 AATCAATCCATACA--ACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATTCATACT-
65 AATAAATCAATACATTA-TTTAA-AATAAATCAATCCATA--CT--AATAAAT-TATTTAAAATA
* * *
5658556 AATAAAT---TATTTAAAATAAATCAATCCTTACTAATAAAT
123 AATCAATCCATATTTAAAATAAATCAATTCATACTAATAAAT
**
5658595 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTATAAAATA
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAAT-AAATA
* * * **
5658660 AATCAATCCTTACTAATAAATTATTTAAAATAAATCAATACATAC-AACTGCA--A--T--AATA
65 AAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATA
5658718 AATCAATCCATATTTTAAAATAAATCAATTCATACTAATAAAT
123 AATCAATCCATA-TTTAAAATAAATCAATTCATACTAATAAAT
* * ***
5658761 TATTTAAAATAAATCAATCCTTACAAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATA
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAAT-AAATA
* * * *
5658826 ATTCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AACTACAA-TAATAAATCA
65 AAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAA-TA-AATTATTTAA--A
** ** *
5658889 ATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAAT
120 ATAAAT-C-AATCCA-TATTTAAAATAAATCAATTCATACTAATAAAT
5658937 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAA---ATACAACTACAAT
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAA-TA-AAT
* *
5658999 -AATAAATCAATCCA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCA
64 AAATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
* *
5659062 ATTCATATTCCAAAATAAATCAATTCATACTAATAAAT
128 ATCCATATT-TAAAATAAATCAATTCATACTAATAAAT
* ***
5659100 TATTTAAAATAAATCAATCCATAC-AACT--A-TA---ATAATAAATCAATCCATATTTTAAAAT
1 TATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATACAAT-AAAT
* *
5659158 AAATCAATTCATACTAATAAATTATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATA
64 AAAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
*
5659223 AATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAAT
123 AATCAATCCATA-TTTAAAATAAATCAATTCATACTAATAAAT
5659266 TATTTAAAATAAATC-A---AT-CT-AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATT
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AAT-AA--
*
5659321 ATTTAAAATAAATCAATACA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATA
62 A--T-AAATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
*
5659385 AATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAAT
123 AATCAAT-C---C------A-TATTTAAAATAAATCAATTCATACTAATAAAT
* ***
5659438 TATTTAAAATAAATCAATCCATAC-AACTACA--A--T--AATAAATCAATCCATATTTTAAAAT
1 TATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATACAAT-AAAT
* *
5659496 AAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAATA
64 AAAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
* *
5659561 AATCAATCCATATTTTAAAATAAATCAATCCATAC-AACTACA-
123 AATCAATCCATA-TTTAAAATAAATCAATTCATACTAA-TAAAT
*
5659603 -A--T--AATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAAT---T-C-AT-ACT-A
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAATAAATAA
*
5659646 AT-AA-------ATTATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAATAAATCAATC
66 ATAAATCAATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATC
* * * * * *
5659703 CATA-CT--AATAAAT-TATTTAAAATAAATCAAT
131 CATATTTAAAATAAATCAATTCATACT-AATAAAT
*
5659734 CCATATTATAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATACATACAACTG
1 ---TATT-TAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAA-T-
* * *
5659799 CAAT-AATAAATCAATCCA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAA
60 AAATAAATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAA
* * * * * * *
5659862 ATCAATCCTTA-CT--AATAAAT-TATTTAAAATAAATCAAT
124 ATCAATCCATATTTAAAATAAATCAATTCATACT-AATAAAT
*
5659900 CCATATTTTAAAATAATTCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
1 ---TA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAA-T-
*
5659965 CAATAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATT
60 --A-AATAAAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAATAAATTATT
* * *
5660030 TAAAATAAATCAATCCATA---CAAATAAAT-TATT--TA-AAATAAAT
116 TAAAATAAATCAATCCATATTTAAAATAAATCAATTCATACTAATAAAT
* * * ** ** *
5660072 CAATCCATACAACTACAAT-AATAAAT-C-AATCCA-TATTTTAAAATAAATCAATTCATACTAA
1 -TAT--TTA-AAATA-AATCAATCCATACTAATAAATTA-TTTAAAATAAATCAATCCATAC-AA
* * *
5660133 TAAATTATTTAAAATAAATCAATTCA-TATTCCAAAATAAATCAATTCATACTAATAAATTATTT
59 T-AA--A--T-AAATAAATCAATACATTATT-TAAAATAAATCAATCCATACTAATAAATTATTT
5660197 AAAATAAATCAATCCATATTCTAAAATAAATCAATTCATACTAATAAAT
117 AAAATAAATCAATCCATATT-TAAAATAAATCAATTCATACTAATAAAT
* ***
5660246 TATTTAAAATAAATCAATCCATAC-AACTACA--A--T--AATAAATCAATCCATATTTTAAAAT
1 TATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATACAAT-AAAT
*
5660304 AAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
64 AAAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
* * *
5660369 AATCAATCCATA-CT--AATAAAT-TATT--TA-AAATAAAT
123 AATCAATCCATATTTAAAATAAATCAATTCATACTAATAAAT
* * * ** ** *
5660404 CAATCCATACAACTACAAT-AATAAAT-C-AATCCA-TATTTTAAAATAAATCAATTCATACTAA
1 -TAT--TTA-AAATA-AATCAATCCATACTAATAAATTA-TTTAAAATAAATCAATCCATAC-AA
* * *
5660465 TAAATTATTTAAAATAAATCAATTCA-TATTCCAAAATAAATCAATTCATACTAATAAATTATTT
59 T-AA--A--T-AAATAAATCAATACATTATT-TAAAATAAATCAATCCATACTAATAAATTATTT
5660529 AAAATAAATCAATCCATATTCTAAAATAAATCAATTCATACTAATAAAT
117 AAAATAAATCAATCCATATT-TAAAATAAATCAATTCATACTAATAAAT
* ***
5660578 TATTTAAAATAAATCAATCCATAC-AACTACA--A--T--AATAAATCAATCCATATTTTAAAAT
1 TATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATACAAT-AAAT
* *
5660636 AAATCAATTCATACTAATAAATTATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATA
64 AAAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
* *
5660701 AATCAATCCATATTTTAAAATAAATCAATCCATACTATTAAAT
123 AATCAATCCATA-TTTAAAATAAATCAATTCATACTAATAAAT
5660744 TATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATT
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AAT-AA--
* *
5660799 ATTTAAAATAAATCAAAACA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATA
62 A--T-AAATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
* * * * * * *
5660863 AAACAATCCATA-CT--AATAAAT-TATTTAAAATAAATCAATT
123 AATCAATCCATATTTAAAATAAATCAATTCATACT-AAT-AAAT
5660903 CATATTATAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTAC
1 --TATT-TAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAA-TA-
* *
5660968 AAT-AATAAATCAATCCA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAA
61 AATAAATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAA
* * * * *
5661031 TCAATCC----TTAATAATAAAT-TATTTAAAATAAATCAATCT
125 TCAATCCATATTTAA-AATAAATCAATTCATACT-AAT-AA-AT
* ***
5661070 ATATTTTAAAATAAATCAATCCATAC-AACTACA--A--T--AATAAATCAATCCATATTTTAAA
1 -TA-TTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATACAAT-AA
* *
5661128 ATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAA
62 ATAAAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAA
* * * * * *
5661193 TAAATCAATCCATA-CT--AATAAAT-TATTTAAAATAAATCAATACA
121 TAAATCAATCCATATTTAAAATAAATCAATTCATACT-AAT-AA-A-T
* * *
5661237 TATTATAAAATAAATCAATCCATACTAATACATTATTTAAAATAAATCAATACATACAACTGCAA
1 TATT-TAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAA-T-AAA
* *
5661302 T-AATAAATCAATCCA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATC
63 TAAATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATC
* * * * * * *
5661365 AATCCTTA-CT--AATAAAT-TATTTAAAATAAATCAAT
127 AATCCATATTTAAAATAAATCAATTCATACT-AATAAAT
* ***
5661400 CCATATTTCAAAATAATTCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAA
1 ---TATTT-AAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAAT-A
*
5661465 AATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAA
61 AATAAAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAA
5661530 ATAAATCAATCCATATTTTAAAATAAATCAA-TC---C--AT--A-
120 ATAAATCAATCCATA-TTTAAAATAAATCAATTCATACTAATAAAT
* * ***
5661567 T-TTTAAAATAAATCAATTCATAC-AACTACA--A--T--AATAAATCAATCCATATTTTAAAAT
1 TATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATACAAT-AAAT
* ** * * * * *
5661624 AAATCAATTC-ATACA--ACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
64 AAAT-AAATCAATACATTA-TTTAA-AATAAATCAATCCATA--CT--AATAAAT-TATTTAAAA
* * *
5661686 T-AATAAAT---TATTTAAAATAAATCAATCCATACTAATAAAG
121 TAAATCAATCCATATTTAAAATAAATCAATTCATACTAATAAAT
*
5661726 TATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAA-TA-AAT
*
5661791 -AATAAATCAATCCA-TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT--
64 AAATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
*
5661852 -T--AT-TTTAAAATAAATCAATCCATACTAATAAAT
128 ATCCATATTTAAAATAAATCAATTCATACTAATAAAT
* * * ** * * * *
5661885 TATTAAAAATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATACTAAT
1 TATTTAAAATAAATCAATCCATACT-AATAAAT---TA-TTTAAAATAAATCAATCCATAC-AAT
* *
5661950 AAATTATTTAAAATAAATCAATCCA-TATTTTAAAATAAATCAATTCATACTAATAAATTATTTA
60 -AA--A--T-AAATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAATAAATTATTTA
* * * * * * *
5662014 AAATAAATCAATCCTTA-CT--AATAAAT-TATTTAAAATAAATCAAT
118 AAATAAATCAATCCATATTTAAAATAAATCAATTCATACT-AATAAAT
* ***
5662058 CCATATTTTAAAATAATTCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAA
1 ---TA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAAT-A
* *
5662123 AATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCACACTAATAAATTATTTAAA
61 AATAAAT-AA---AT-C-AATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAA
5662188 ATAAATCAATCCATATTTTAAAATAAATCAA-TC---C--AT--A-
120 ATAAATCAATCCATA-TTTAAAATAAATCAATTCATACTAATAAAT
* ***
5662225 T-TTTAAAATAAATCAATCCATAC-AACTACA--A--T--AATAAATCAATCCATATTTTAAAAT
1 TATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATACAAT-AAAT
* ** * * * * *
5662282 AAATCAATTC-ATACA--ACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
64 AAAT-AAATCAATACATTA-TTTAA-AATAAATCAATCCATA--CT--AATAAAT-TATTTAAAA
* *
5662344 T-AATAAAT---TATTTAAAATAAATCAATTCATACTAATAAAG
121 TAAATCAATCCATATTTAAAATAAATCAATTCATACTAATAAAT
*
5662384 TATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATT
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AAT-AA--
*
5662449 ATTTAAAATAAATCAATTCA-TATTATAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
62 A--T-AAATAAATCAATACATTATT-TAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
* * ** **
5662513 AATCAATCCATA---CAACTACAAT-AATAAAT-C-AATCCA-
123 AATCAATCCATATTTAAAATA-AATCAATTCATACTAATAAAT
* *
5662549 TATTTTAAAATAAATCAATTCATACT-ATAAATTATTTAAAA-AAATCAATCCTTACTAATAAAT
1 TA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AAT-AA-
* *
5662612 TATTTAAAATAAATCAAT-C-TATATTTTAAATAAATCAATCCATAC-AACTACA--A--T---A
62 -A--T-AAATAAATCAATACAT-TATTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAA
5662667 TAAATCAATCCATATTTTAAAAT-AATCAATTCATACTAATAAAT
121 TAAATCAATCCATA-TTTAAAATAAATCAATTCATACTAATAAAT
*
5662711 TATTTAAAATAAATCAATCCTTACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATT
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AAT-AA--
*
5662776 ATTTAAAATAAATCAATACA-TATTATAAAATAAATCAATCCATACTAATACATTATTTAAAATA
62 A--T-AAATAAATCAATACATTATT-TAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
* * * * ** **
5662840 AATCAATACATA---CAACTGCAAT-AATAAAT-C-AATCCA-
123 AATCAATCCATATTTAAAAT-AAATCAATTCATACTAATAAAT
* *
5662876 TATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCTTACTAATAAAT
1 TA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AAT-AA-
* *
5662941 TATTTAAAATAAATCAATCCA-TATTTTAAAATAATTCAATCCATACTAATAAATTATTTAAAAT
62 -A--T-AAATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
5663005 AAATCAATCCATATTTTAAAATAAATCAATTCATACTAATAAAT
122 AAATCAATCCATA-TTTAAAATAAATCAATTCATACTAATAAAT
* **
5663049 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCAT--ATTTTA-AA
1 TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAATAAATAA
* * *
5663111 ATAAATCAAT-CAATATTTTAAAATAAATCAATTCATAC-AACTACA--A--T--AATAAATCAA
66 ATAAATCAATACATTA-TTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAA
*
5663168 TCCATATTTTAAAATAAATCAATTCATAC-AACTACA-
129 TCCATA-TTTAAAATAAATCAATTCATACTAA-TAAAT
* * * * * * *
5663204 -A--T--AATAAATCAATTCATATTTTAAAATAAATCAATTCATACTAATAAAT-TAT--TTAAA
1 TATTTAAAATAAATCAATCCATA--CT--AATAAAT-TATT--TA-AAATAAATCAATCCATACA
* * * * *
5663261 ATAAATCAATACATACTAATAAAGTATTTAAAATAAATCAATTCATACTAATAAATTATTTAAAA
58 ATAAATAAATAAAT-C-AATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAA
* * ** **
5663326 TAAATCAATCCATA---CAACTACAAT-AATAAAT-C-AATCCA-
121 TAAATCAATCCATATTTAAAATA-AATCAATTCATACTAATAAAT
5663364 TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT
1 TA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT
5663411 TATTTTAAAA
Statistics
Matches: 4504, Mismatches: 446, Indels: 1061
0.75 0.07 0.18
Matches are distributed among these distances:
129 4 0.00
130 9 0.00
131 2 0.00
132 1 0.00
134 57 0.01
135 1 0.00
138 1 0.00
140 11 0.00
141 1 0.00
143 1 0.00
144 1 0.00
146 3 0.00
148 6 0.00
149 9 0.00
150 100 0.02
151 13 0.00
152 13 0.00
153 6 0.00
154 40 0.01
155 21 0.00
156 140 0.03
157 31 0.01
158 64 0.01
159 82 0.02
160 173 0.04
161 94 0.02
162 395 0.09
163 153 0.03
164 119 0.03
165 89 0.02
166 1606 0.36
167 119 0.03
168 67 0.01
169 33 0.01
170 183 0.04
171 92 0.02
172 401 0.09
173 54 0.01
174 32 0.01
175 10 0.00
176 239 0.05
177 25 0.01
178 2 0.00
180 1 0.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.34
Consensus pattern (164 bp):
TATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAATAAATAA
ATAAATCAATACATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATC
CATATTTAAAATAAATCAATTCATACTAATAAAT
Found at i:5657964 original size:22 final size:21
Alignment explanation
Indices: 5657935--5657979 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5657925 ACTAATAAAT
5657935 TATTTAAAATAAATCAATCCA
1 TATTTAAAATAAATCAATCCA
*
5657956 TATTCTAAAATAAATCAATTCA
1 TATT-TAAAATAAATCAATCCA
5657978 TA
1 TA
5657980 CTAATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5658047 original size:22 final size:22
Alignment explanation
Indices: 5657991--5658061 Score: 79
Period size: 22 Copynumber: 3.0 Consensus size: 22
5657981 TAATAAATTA
5657991 TTTAAAATAAATCAATCCATACAAC
1 TTTAAAATAAATCAATCCAT---AC
* *
5658016 TATAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATCCATAC
*
5658039 TTTAAAATAAATCAATTCATAC
1 TTTAAAATAAATCAATCCATAC
5658061 T
1 T
5658062 AATAAATTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
22 16 0.40
23 5 0.12
25 4 0.10
26 15 0.38
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAC
Found at i:5658068 original size:22 final size:21
Alignment explanation
Indices: 5658016--5658068 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
5658006 TCCATACAAC
5658016 TATAAT-AATAAATCAATCCA
1 TATAATAAATAAATCAATCCA
** *
5658036 TATTTTAAAATAAATCAATTCA
1 TATAAT-AAATAAATCAATCCA
5658058 TACTAATAAAT
1 TA-TAATAAAT
5658069 TATTTAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
20 4 0.16
22 19 0.76
23 2 0.08
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (21 bp):
TATAATAAATAAATCAATCCA
Found at i:5658078 original size:32 final size:32
Alignment explanation
Indices: 5658039--5663103 Score: 3052
Period size: 32 Copynumber: 177.7 Consensus size: 32
5658029 CAATCCATAT
*
5658039 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658071 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658103 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658125 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658157 TTTAAAATAAATC-A---AT-CT-AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658179 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658211 TTTAAAATAAATC-A---ATAC--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658233 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658265 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658297 TTTAAAATAAATCAAT-C---C--AT--ATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658321 --TAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658351 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5658381 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658399 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658431 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658463 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658485 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5658515 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658533 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658565 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658597 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658629 TTTAAAATAAATCAAT-C---C--AT--ATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658653 --TAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* **
5658683 TTTAAAATAAATCAATACATAC-AACTGCA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5658713 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658731 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* *
5658763 TTTAAAATAAATCAATCCTTACAAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658795 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658817 TTTAAAATAATTCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658849 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5658879 --T--AATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658907 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5658939 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5658971 TTTAAAATAAATCAA---ATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5658998 --T--AATAAATCAATCCATA-T---------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659016 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659048 TTTAAAATAAATCAAT---T-C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
** *
5659070 TCCAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659102 TTTAAAATAAATCAATCCATAC-AACT--A-TA
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
*
5659131 ---ATAATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659150 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659182 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659214 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659236 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659268 TTTAAAATAAATC-A---AT-CT-AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659290 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659322 TTTAAAATAAATC-A---ATAC--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659344 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659376 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659408 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659440 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5659470 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659488 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659520 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659552 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659574 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5659604 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659622 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659654 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659686 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659718 TTTAAAATAAATCAAT-C---C--AT--ATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659742 --TAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* **
5659772 TTTAAAATAAATCAATACATAC-AACTGCA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5659802 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659820 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659852 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659884 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659906 TTTAAAATAATTCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5659938 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5659968 --T--AATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5659996 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660028 TTTAAAATAAATCAATCCATACAAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660060 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5660090 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660108 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660140 TTTAAAATAAATCAAT---T-C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
** *
5660162 TCCAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660194 TTTAAAATAAATCAATCCATATTCTAAAATAAATCAA
1 TTTAAAATAAATCAATCCATA--CT--AATAAAT-TA
* * * * *
5660231 TTCATACTAATAAAT-TAT--TTA-AAATAAATCAA
1 TT--TA-AAATAAATCAATCCATACTAATAAAT-TA
* * ** **
5660263 TCCATACAACTACAAT-AATAAAT-C-AATCCATAT-
1 T--TTA-AAATA-AATCAATCCATACTAATAAAT-TA
*
5660296 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660328 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660360 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660392 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5660422 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660440 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660472 TTTAAAATAAATCAAT---T-C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
** *
5660494 TCCAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660526 TTTAAAATAAATCAATCCATATTCTAAAATAAATCAA
1 TTTAAAATAAATCAATCCATA--CT--AATAAAT-TA
* * * * *
5660563 TTCATACTAATAAAT-TAT--TTA-AAATAAATCAA
1 TT--TA-AAATAAATCAATCCATACTAATAAAT-TA
* * ** **
5660595 TCCATACAACTACAAT-AATAAAT-C-AATCCATAT-
1 T--TTA-AAATA-AATCAATCCATACTAATAAAT-TA
*
5660628 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660660 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660692 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660714 TTTAAAATAAATCAATCCATACTATTAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660746 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660768 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660800 TTTAAAATAAATCAA---A-AC--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660822 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660854 TTTAAAATAAAACAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660886 TTTAAAATAAATCAAT---T-C--AT--ATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5660910 --TAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660940 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5660970 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5660988 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* *
5661020 TTTAAAATAAATCAATCCTTAATAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5661052 TTTAAAATAAATC-A---AT-CT-AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661074 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5661104 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661122 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661154 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5661186 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5661218 TTTAAAATAAATC-A---ATAC--AT--ATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661242 --TAAAATAAATCAATCCATACTAATACATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* **
5661272 TTTAAAATAAATCAATACATAC-AACTGCA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5661302 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661320 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661352 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5661384 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* *
5661406 TTCAAAATAATTCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5661438 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661460 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5661492 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5661524 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* *
5661546 TTTAAAATAAATCAATCCATATTTTAAAATAAATCAA
1 TTTAAAATAAATCAATCCATA--CT--AATAAAT-TA
* ** **
5661583 TTCATACAACTACAAT-AATAAAT-C-AATCCA-TA
1 TT--TA-AAATA-AATCAATCCATACTAATAAATTA
* *
5661615 TTTTAAAATAAATCAATTCATAC-AACTACA--A
1 -TTTAAAATAAATCAATCCATACTAA-TAAATTA
5661646 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661664 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661696 TTTAAAATAAATCAATCCATACTAATAAAGTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661728 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661760 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5661790 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5661808 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* ** * *
5661840 TTTAAAATAAAT-TAT-TTTA-AAATAAATCAA
1 TTTAAAATAAATCAATCCATACTAATAAAT-TA
** * * * * **
5661870 TCCATACT-AATAAAT-TATTAAAAATAAATTA
1 TTTAAAATAAATCAATCCA-TACTAATAAATTA
5661901 TTTTAAAATAAATCAAT-C---C--AT--A-T-
1 -TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661924 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5661956 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5661978 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662010 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662042 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662064 TTTAAAATAATTCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662096 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662118 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662150 TTTAAAATAAATCAATCCACACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662182 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662204 TTTAAAATAAATCAATCCATA-T---------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662226 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
* *
5662256 --T--AATAAATCAATCCATATTTTAAAATAAATCAA
1 TTTAAAATAAATCAATCCATA--CT--AATAAAT-TA
* ** **
5662289 TTCATACAACTACAAT-AATAAAT-C-AATCCA-TA
1 TT--TA-AAATA-AATCAATCCATACTAATAAATTA
*
5662321 TTTTAAAATAAATCAATTCATACTAATAAATTA
1 -TTTAAAATAAATCAATCCATACTAATAAATTA
* *
5662354 TTTAAAATAAATCAATTCATACTAATAAAGTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662386 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662418 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662450 TTTAAAATAAATCAAT---T-C--AT--ATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662474 --TAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662504 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5662534 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662552 TTTAAAATAAATCAATTCATACT-ATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662583 TTTAAAA-AAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* ** *
5662614 TTTAAAATAAATCAATCTATA-TTTTAAATAA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* * * *
5662645 ATCAATCCATACAACTACAAT--ATA--AATCAATCCATA
1 TTTAA--AATA-AA-T-CAATCCATACTAATAAAT---TA
*
5662681 TTTTAAAAT-AATCAATTCATACTAATAAATTA
1 -TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662713 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662745 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662777 TTTAAAATAAATC-A---ATAC--AT--ATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662801 --TAAAATAAATCAATCCATACTAATACATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* **
5662831 TTTAAAATAAATCAATACATAC-AACTGCA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5662861 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662879 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662911 TTTAAAATAAATCAATCCTTACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662943 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5662965 TTTAAAATAATTCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5662997 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5663019 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5663051 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5663083 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
5663104 TTTTAAAATA
Statistics
Matches: 4084, Mismatches: 230, Indels: 1438
0.71 0.04 0.25
Matches are distributed among these distances:
20 16 0.00
22 742 0.18
23 81 0.02
24 87 0.02
25 26 0.01
26 406 0.10
27 20 0.00
28 130 0.03
29 37 0.01
30 131 0.03
31 145 0.04
32 2105 0.52
33 37 0.01
34 28 0.01
35 11 0.00
36 19 0.00
37 16 0.00
39 10 0.00
40 31 0.01
41 6 0.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:5658079 original size:14 final size:14
Alignment explanation
Indices: 5658062--5658114 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
5658052 AATTCATACT
5658062 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5658076 AATAAATCAATTCATACT
1 AATAAAT-TATT--TA-A
5658094 AATAAATTATTTAA
1 AATAAATTATTTAA
5658108 AATAAAT
1 AATAAAT
5658115 CAATCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5658129 original size:22 final size:22
Alignment explanation
Indices: 5658103--5658145 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
5658093 TAATAAATTA
5658103 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
5658125 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
5658146 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5658154 original size:22 final size:22
Alignment explanation
Indices: 5658105--5658153 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
5658095 ATAAATTATT
**
5658105 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
5658127 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5658150 TAAA
1 TAAA
5658154 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5658208 original size:22 final size:22
Alignment explanation
Indices: 5658159--5658207 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5658149 ATAAATTATT
* **
5658159 TAAAATAAATCAATCTATATTT
1 TAAAATAAATCAATCCATATAA
5658181 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5658204 TAAA
1 TAAA
5658208 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5658227 original size:22 final size:22
Alignment explanation
Indices: 5658202--5658248 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
5658192 AATCCATACT
5658202 AATAAAT-TATTTAAAATAAATC
1 AATAAATAT-TTTAAAATAAATC
*
5658224 AATACATATTTTAAAATAAATC
1 AATAAATATTTTAAAATAAATC
5658246 AAT
1 AAT
5658249 TCATACTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (22 bp):
AATAAATATTTTAAAATAAATC
Found at i:5658253 original size:22 final size:22
Alignment explanation
Indices: 5658211--5658253 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5658201 TAATAAATTA
5658211 TTTAAAATAAATCAATACATAT
1 TTTAAAATAAATCAATACATAT
*
5658233 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATACATA
5658254 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATACATAT
Found at i:5658262 original size:22 final size:22
Alignment explanation
Indices: 5658213--5658261 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5658203 ATAAATTATT
**
5658213 TAAAATAAATCAATACATATTT
1 TAAAATAAATCAATACATATAA
*
5658235 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATACATA-TAA
5658258 TAAA
1 TAAA
5658262 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATACATATAA
Found at i:5658325 original size:22 final size:21
Alignment explanation
Indices: 5658295--5658339 Score: 81
Period size: 22 Copynumber: 2.1 Consensus size: 21
5658285 ACTAATAAAT
5658295 TATTTAAAATAAATCAATCCA
1 TATTTAAAATAAATCAATCCA
5658316 TATTATAAAATAAATCAATCCA
1 TATT-TAAAATAAATCAATCCA
5658338 TA
1 TA
5658340 CTAATAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5658348 original size:22 final size:22
Alignment explanation
Indices: 5658299--5658347 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
5658289 ATAAATTATT
*
5658299 TAAAATAAATCAATCCATATTA
1 TAAAATAAATCAATCCATATAA
5658321 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5658344 TAAA
1 TAAA
5658348 TTATTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 19 0.76
23 6 0.24
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5658439 original size:14 final size:14
Alignment explanation
Indices: 5658422--5658474 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
5658412 AATTCATACT
5658422 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5658436 AATAAATCAATCCTTACT
1 AATAAAT-TAT--TTA-A
5658454 AATAAATTATTTAA
1 AATAAATTATTTAA
5658468 AATAAAT
1 AATAAAT
5658475 CAATCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5658489 original size:22 final size:22
Alignment explanation
Indices: 5658463--5658553 Score: 110
Period size: 22 Copynumber: 4.0 Consensus size: 22
5658453 TAATAAATTA
5658463 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5658485 TTTAAAATAAATCAATCCATACAAC
1 TTTAAAATAAATCAATCCAT---AT
**
5658510 TACAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATCCATAT
*
5658533 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
5658554 CTAATAAATT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
22 35 0.60
23 4 0.07
25 4 0.07
26 15 0.26
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5658559 original size:18 final size:17
Alignment explanation
Indices: 5658538--5658626 Score: 55
Period size: 18 Copynumber: 5.4 Consensus size: 17
5658528 CATATTTTAA
5658538 AATAAATCAATTCATACT
1 AATAAATCAATTC-TACT
* *
5658556 AATAAAT-TATT-TA-A
1 AATAAATCAATTCTACT
*
5658570 AATAAATCAATCCTTACT
1 AATAAATCAATTC-TACT
* *
5658588 AATAAAT-TATT-TA-A
1 AATAAATCAATTCTACT
*
5658602 AATAAATCAATCCATACT
1 AATAAATCAATTC-TACT
5658620 AATAAAT
1 AATAAAT
5658627 TATTTAAAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 16
0.66 0.14 0.20
Matches are distributed among these distances:
14 14 0.27
15 8 0.15
17 9 0.17
18 21 0.40
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
AATAAATCAATTCTACT
Found at i:5658657 original size:22 final size:21
Alignment explanation
Indices: 5658627--5658668 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
5658617 ACTAATAAAT
5658627 TATTTAAAATAAATCAATCCA
1 TATTTAAAATAAATCAATCCA
5658648 TATTATAAAATAAATCAATCC
1 TATT-TAAAATAAATCAATCC
5658669 TTACTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.33
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5658680 original size:22 final size:22
Alignment explanation
Indices: 5658631--5658679 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
5658621 ATAAATTATT
*
5658631 TAAAATAAATCAATCCATATTA
1 TAAAATAAATCAATCCATATAA
*
5658653 TAAAATAAATCAATCCTTACTAA
1 TAAAATAAATCAATCCATA-TAA
5658676 TAAA
1 TAAA
5658680 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5658771 original size:14 final size:14
Alignment explanation
Indices: 5658754--5658806 Score: 61
Period size: 14 Copynumber: 3.5 Consensus size: 14
5658744 AATTCATACT
5658754 AATAAATTATTTAA
1 AATAAATTATTTAA
*
5658768 AATAAATCAATCCTTACA
1 AATAAAT-TAT--TTA-A
5658786 AATAAATTATTTAA
1 AATAAATTATTTAA
5658800 AATAAAT
1 AATAAAT
5658807 CAATCCATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 15 0.45
15 5 0.15
17 5 0.15
18 8 0.24
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.36
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5658821 original size:22 final size:22
Alignment explanation
Indices: 5658795--5658837 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5658785 AAATAAATTA
5658795 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5658817 TTTAAAATAATTCAATCCATA
1 TTTAAAATAAATCAATCCATA
5658838 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5658846 original size:22 final size:22
Alignment explanation
Indices: 5658797--5658845 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5658787 ATAAATTATT
**
5658797 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5658819 TAAAATAATTCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5658842 TAAA
1 TAAA
5658846 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5659099 original size:22 final size:22
Alignment explanation
Indices: 5659051--5659092 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
5659041 TAAATTATTT
* *
5659051 AAAATAAATCAATTCATATTCC
1 AAAATAAATCAATTCATACTCA
5659073 AAAATAAATCAATTCATACT
1 AAAATAAATCAATTCATACT
5659093 AATAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATAAATCAATTCATACTCA
Found at i:5659158 original size:22 final size:22
Alignment explanation
Indices: 5659102--5659172 Score: 79
Period size: 22 Copynumber: 3.0 Consensus size: 22
5659092 TAATAAATTA
5659102 TTTAAAATAAATCAATCCATACAAC
1 TTTAAAATAAATCAATCCAT---AC
* *
5659127 TATAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATCCATAC
*
5659150 TTTAAAATAAATCAATTCATAC
1 TTTAAAATAAATCAATCCATAC
5659172 T
1 T
5659173 AATAAATTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
22 16 0.40
23 5 0.12
25 4 0.10
26 15 0.38
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAC
Found at i:5659179 original size:22 final size:21
Alignment explanation
Indices: 5659127--5659179 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
5659117 TCCATACAAC
5659127 TATAAT-AATAAATCAATCCA
1 TATAATAAATAAATCAATCCA
** *
5659147 TATTTTAAAATAAATCAATTCA
1 TATAAT-AAATAAATCAATCCA
5659169 TACTAATAAAT
1 TA-TAATAAAT
5659180 TATTTAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
20 4 0.16
22 19 0.76
23 2 0.08
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (21 bp):
TATAATAAATAAATCAATCCA
Found at i:5659190 original size:14 final size:14
Alignment explanation
Indices: 5659173--5659225 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
5659163 AATTCATACT
5659173 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5659187 AATAAATCAATTCATACT
1 AATAAAT-TATT--TA-A
5659205 AATAAATTATTTAA
1 AATAAATTATTTAA
5659219 AATAAAT
1 AATAAAT
5659226 CAATCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5659240 original size:22 final size:22
Alignment explanation
Indices: 5659214--5659256 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
5659204 TAATAAATTA
5659214 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
5659236 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
5659257 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5659265 original size:22 final size:22
Alignment explanation
Indices: 5659216--5659264 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
5659206 ATAAATTATT
**
5659216 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
5659238 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5659261 TAAA
1 TAAA
5659265 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5659319 original size:22 final size:22
Alignment explanation
Indices: 5659270--5659318 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5659260 ATAAATTATT
* **
5659270 TAAAATAAATCAATCTATATTT
1 TAAAATAAATCAATCCATATAA
5659292 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5659315 TAAA
1 TAAA
5659319 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5659338 original size:22 final size:22
Alignment explanation
Indices: 5659313--5659359 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
5659303 AATCCATACT
5659313 AATAAAT-TATTTAAAATAAATC
1 AATAAATAT-TTTAAAATAAATC
*
5659335 AATACATATTTTAAAATAAATC
1 AATAAATATTTTAAAATAAATC
5659357 AAT
1 AAT
5659360 TCATACTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (22 bp):
AATAAATATTTTAAAATAAATC
Found at i:5659364 original size:22 final size:22
Alignment explanation
Indices: 5659322--5659364 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5659312 TAATAAATTA
5659322 TTTAAAATAAATCAATACATAT
1 TTTAAAATAAATCAATACATAT
*
5659344 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATACATA
5659365 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATACATAT
Found at i:5659373 original size:22 final size:22
Alignment explanation
Indices: 5659324--5659372 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5659314 ATAAATTATT
**
5659324 TAAAATAAATCAATACATATTT
1 TAAAATAAATCAATACATATAA
*
5659346 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATACATA-TAA
5659369 TAAA
1 TAAA
5659373 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATACATATAA
Found at i:5659528 original size:14 final size:14
Alignment explanation
Indices: 5659511--5659563 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
5659501 AATTCATACT
5659511 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5659525 AATAAATCAATCCTTACT
1 AATAAAT-TAT--TTA-A
5659543 AATAAATTATTTAA
1 AATAAATTATTTAA
5659557 AATAAAT
1 AATAAAT
5659564 CAATCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5659578 original size:22 final size:22
Alignment explanation
Indices: 5659552--5659642 Score: 110
Period size: 22 Copynumber: 4.0 Consensus size: 22
5659542 TAATAAATTA
5659552 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5659574 TTTAAAATAAATCAATCCATACAAC
1 TTTAAAATAAATCAATCCAT---AT
**
5659599 TACAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATCCATAT
*
5659622 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
5659643 CTAATAAATT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
22 35 0.60
23 4 0.07
25 4 0.07
26 15 0.26
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5659648 original size:18 final size:17
Alignment explanation
Indices: 5659627--5659715 Score: 55
Period size: 18 Copynumber: 5.4 Consensus size: 17
5659617 CATATTTTAA
5659627 AATAAATCAATTCATACT
1 AATAAATCAATTC-TACT
* *
5659645 AATAAAT-TATT-TA-A
1 AATAAATCAATTCTACT
*
5659659 AATAAATCAATCCTTACT
1 AATAAATCAATTC-TACT
* *
5659677 AATAAAT-TATT-TA-A
1 AATAAATCAATTCTACT
*
5659691 AATAAATCAATCCATACT
1 AATAAATCAATTC-TACT
5659709 AATAAAT
1 AATAAAT
5659716 TATTTAAAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 16
0.66 0.14 0.20
Matches are distributed among these distances:
14 14 0.27
15 8 0.15
17 9 0.17
18 21 0.40
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
AATAAATCAATTCTACT
Found at i:5659746 original size:22 final size:21
Alignment explanation
Indices: 5659716--5659760 Score: 81
Period size: 22 Copynumber: 2.1 Consensus size: 21
5659706 ACTAATAAAT
5659716 TATTTAAAATAAATCAATCCA
1 TATTTAAAATAAATCAATCCA
5659737 TATTATAAAATAAATCAATCCA
1 TATT-TAAAATAAATCAATCCA
5659759 TA
1 TA
5659761 CTAATAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5659769 original size:22 final size:22
Alignment explanation
Indices: 5659720--5659768 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
5659710 ATAAATTATT
*
5659720 TAAAATAAATCAATCCATATTA
1 TAAAATAAATCAATCCATATAA
5659742 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5659765 TAAA
1 TAAA
5659769 TTATTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 19 0.76
23 6 0.24
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5659860 original size:14 final size:14
Alignment explanation
Indices: 5659843--5659895 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
5659833 AATTCATACT
5659843 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5659857 AATAAATCAATCCTTACT
1 AATAAAT-TAT--TTA-A
5659875 AATAAATTATTTAA
1 AATAAATTATTTAA
5659889 AATAAAT
1 AATAAAT
5659896 CAATCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5659910 original size:22 final size:22
Alignment explanation
Indices: 5659884--5659926 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5659874 TAATAAATTA
5659884 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5659906 TTTAAAATAATTCAATCCATA
1 TTTAAAATAAATCAATCCATA
5659927 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5659935 original size:22 final size:22
Alignment explanation
Indices: 5659886--5659934 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5659876 ATAAATTATT
**
5659886 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5659908 TAAAATAATTCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5659931 TAAA
1 TAAA
5659935 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5659991 original size:18 final size:18
Alignment explanation
Indices: 5659968--5660025 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
5659958 ACAACTACAA
5659968 TAATAAATCAATCCATAC
1 TAATAAATCAATCCATAC
* *
5659986 TAATAAAT-TAT--TTA-
1 TAATAAATCAATCCATAC
*
5660000 AAATAAATCAATCCATAC
1 TAATAAATCAATCCATAC
5660018 TAATAAAT
1 TAATAAAT
5660026 TATTTAAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
14 7 0.23
15 4 0.13
17 4 0.13
18 15 0.50
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (18 bp):
TAATAAATCAATCCATAC
Found at i:5660191 original size:22 final size:22
Alignment explanation
Indices: 5660143--5660184 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
5660133 TAAATTATTT
* *
5660143 AAAATAAATCAATTCATATTCC
1 AAAATAAATCAATTCATACTCA
5660165 AAAATAAATCAATTCATACT
1 AAAATAAATCAATTCATACT
5660185 AATAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATAAATCAATTCATACTCA
Found at i:5660221 original size:22 final size:21
Alignment explanation
Indices: 5660192--5660236 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5660182 ACTAATAAAT
5660192 TATTTAAAATAAATCAATCCA
1 TATTTAAAATAAATCAATCCA
*
5660213 TATTCTAAAATAAATCAATTCA
1 TATT-TAAAATAAATCAATCCA
5660235 TA
1 TA
5660237 CTAATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5660523 original size:22 final size:22
Alignment explanation
Indices: 5660475--5660516 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
5660465 TAAATTATTT
* *
5660475 AAAATAAATCAATTCATATTCC
1 AAAATAAATCAATTCATACTCA
5660497 AAAATAAATCAATTCATACT
1 AAAATAAATCAATTCATACT
5660517 AATAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATAAATCAATTCATACTCA
Found at i:5660553 original size:22 final size:21
Alignment explanation
Indices: 5660524--5660568 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5660514 ACTAATAAAT
5660524 TATTTAAAATAAATCAATCCA
1 TATTTAAAATAAATCAATCCA
*
5660545 TATTCTAAAATAAATCAATTCA
1 TATT-TAAAATAAATCAATCCA
5660567 TA
1 TA
5660569 CTAATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5660668 original size:14 final size:14
Alignment explanation
Indices: 5660651--5660703 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
5660641 AATTCATACT
5660651 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5660665 AATAAATCAATTCATACT
1 AATAAAT-TATT--TA-A
5660683 AATAAATTATTTAA
1 AATAAATTATTTAA
5660697 AATAAAT
1 AATAAAT
5660704 CAATCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5660718 original size:22 final size:22
Alignment explanation
Indices: 5660692--5660734 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
5660682 TAATAAATTA
5660692 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
5660714 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
5660735 CTATTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5660743 original size:22 final size:22
Alignment explanation
Indices: 5660693--5660742 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 22
5660683 AATAAATTAT
*
5660693 TTAAAATAAATCAATCCATATT
1 TTAAAATAAATCAATCCATATA
5660715 TTAAAATAAATCAATCCATACTA
1 TTAAAATAAATCAATCCATA-TA
5660738 TTAAA
1 TTAAA
5660743 TTATTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 20 0.77
23 6 0.23
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (22 bp):
TTAAAATAAATCAATCCATATA
Found at i:5660772 original size:22 final size:22
Alignment explanation
Indices: 5660746--5660788 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
5660736 TATTAAATTA
5660746 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
5660768 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
5660789 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5660797 original size:22 final size:22
Alignment explanation
Indices: 5660748--5660796 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
5660738 TTAAATTATT
**
5660748 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
5660770 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5660793 TAAA
1 TAAA
5660797 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5660914 original size:22 final size:21
Alignment explanation
Indices: 5660884--5660928 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5660874 ACTAATAAAT
*
5660884 TATTTAAAATAAATCAATTCA
1 TATTTAAAATAAATCAATCCA
5660905 TATTATAAAATAAATCAATCCA
1 TATT-TAAAATAAATCAATCCA
5660927 TA
1 TA
5660929 CTAATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5660937 original size:22 final size:22
Alignment explanation
Indices: 5660888--5660936 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
5660878 ATAAATTATT
* *
5660888 TAAAATAAATCAATTCATATTA
1 TAAAATAAATCAATCCATATAA
5660910 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5660933 TAAA
1 TAAA
5660937 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5661028 original size:14 final size:14
Alignment explanation
Indices: 5661011--5661063 Score: 61
Period size: 14 Copynumber: 3.5 Consensus size: 14
5661001 AATTCATACT
5661011 AATAAATTATTTAA
1 AATAAATTATTTAA
*
5661025 AATAAATCAATCCTTAA
1 AATAAAT-TAT--TTAA
5661042 TAATAAATTATTTAA
1 -AATAAATTATTTAA
5661057 AATAAAT
1 AATAAAT
5661064 CAATCTATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 14 0.42
15 6 0.18
17 6 0.18
18 7 0.21
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5661142 original size:22 final size:22
Alignment explanation
Indices: 5661052--5661142 Score: 101
Period size: 22 Copynumber: 4.0 Consensus size: 22
5661042 TAATAAATTA
*
5661052 TTTAAAATAAATCAATCTATAT
1 TTTAAAATAAATCAATCCATAT
*
5661074 TTTAAAATAAATCAATCCATACAAC
1 TTTAAAATAAATCAATCCAT---AT
**
5661099 TACAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATCCATAT
*
5661122 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
5661143 CTAATAAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
22 34 0.60
23 4 0.07
25 4 0.07
26 15 0.26
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5661148 original size:18 final size:17
Alignment explanation
Indices: 5661127--5661215 Score: 55
Period size: 18 Copynumber: 5.4 Consensus size: 17
5661117 CATATTTTAA
5661127 AATAAATCAATTCATACT
1 AATAAATCAATTC-TACT
* *
5661145 AATAAAT-TATT-TA-A
1 AATAAATCAATTCTACT
*
5661159 AATAAATCAATCCTTACT
1 AATAAATCAATTC-TACT
* *
5661177 AATAAAT-TATT-TA-A
1 AATAAATCAATTCTACT
*
5661191 AATAAATCAATCCATACT
1 AATAAATCAATTC-TACT
5661209 AATAAAT
1 AATAAAT
5661216 TATTTAAAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 16
0.66 0.14 0.20
Matches are distributed among these distances:
14 14 0.27
15 8 0.15
17 9 0.17
18 21 0.40
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
AATAAATCAATTCTACT
Found at i:5661234 original size:22 final size:22
Alignment explanation
Indices: 5661209--5661255 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
5661199 AATCCATACT
5661209 AATAAATTATT-TAAAATAAATC
1 AATAAA-TATTATAAAATAAATC
*
5661231 AATACATATTATAAAATAAATC
1 AATAAATATTATAAAATAAATC
5661253 AAT
1 AAT
5661256 CCATACTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (22 bp):
AATAAATATTATAAAATAAATC
Found at i:5661260 original size:22 final size:21
Alignment explanation
Indices: 5661216--5661260 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5661206 ACTAATAAAT
5661216 TATTTAAAATAAATCAATACA
1 TATTTAAAATAAATCAATACA
*
5661237 TATTATAAAATAAATCAATCCA
1 TATT-TAAAATAAATCAATACA
5661259 TA
1 TA
5661261 CTAATACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (21 bp):
TATTTAAAATAAATCAATACA
Found at i:5661291 original size:22 final size:23
Alignment explanation
Indices: 5661263--5661335 Score: 60
Period size: 22 Copynumber: 3.1 Consensus size: 23
5661253 AATCCATACT
5661263 AATACATTA-TTTAAAATAAATC
1 AATACATTACTTTAAAATAAATC
* **
5661285 AATACATACAACTGCAATAATAAATC
1 AATACAT--TACTTTAA-AATAAATC
* *
5661311 AATCCA-TATTTTAAAATAAATC
1 AATACATTACTTTAAAATAAATC
5661333 AAT
1 AAT
5661336 TCATACTAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
22 18 0.46
23 4 0.10
24 1 0.03
25 3 0.08
26 13 0.33
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (23 bp):
AATACATTACTTTAAAATAAATC
Found at i:5661360 original size:14 final size:14
Alignment explanation
Indices: 5661343--5661395 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
5661333 AATTCATACT
5661343 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5661357 AATAAATCAATCCTTACT
1 AATAAAT-TAT--TTA-A
5661375 AATAAATTATTTAA
1 AATAAATTATTTAA
5661389 AATAAAT
1 AATAAAT
5661396 CAATCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5661413 original size:22 final size:21
Alignment explanation
Indices: 5661382--5661426 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5661372 ACTAATAAAT
5661382 TATTTAAAATAAATCAATCCA
1 TATTTAAAATAAATCAATCCA
*
5661403 TATTTCAAAATAATTCAATCCA
1 TATTT-AAAATAAATCAATCCA
5661425 TA
1 TA
5661427 CTAATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5661435 original size:22 final size:22
Alignment explanation
Indices: 5661387--5661435 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
5661377 TAAATTATTT
* *
5661387 AAAATAAATCAATCCATATTTC
1 AAAATAAATCAATCCATATCTA
*
5661409 AAAATAATTCAATCCATA-CTA
1 AAAATAAATCAATCCATATCTA
5661430 ATAAAT
1 A-AAAT
5661436 TATTTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATAAATCAATCCATATCTA
Found at i:5661464 original size:22 final size:22
Alignment explanation
Indices: 5661438--5661480 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5661428 TAATAAATTA
5661438 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5661460 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
5661481 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5661489 original size:22 final size:22
Alignment explanation
Indices: 5661440--5661488 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5661430 ATAAATTATT
**
5661440 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5661462 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5661485 TAAA
1 TAAA
5661489 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5661690 original size:18 final size:18
Alignment explanation
Indices: 5661669--5661757 Score: 70
Period size: 18 Copynumber: 5.4 Consensus size: 18
5661659 CATATTTTAA
5661669 AATAAATCAATTCATACT
1 AATAAATCAATTCATACT
* *
5661687 AATAAAT-TATT--TA-A
1 AATAAATCAATTCATACT
*
5661701 AATAAATCAATCCATACT
1 AATAAATCAATTCATACT
*
5661719 AATAAAGT--ATT--TA-A
1 AATAAA-TCAATTCATACT
5661733 AATAAATCAATTCATACT
1 AATAAATCAATTCATACT
5661751 AATAAAT
1 AATAAAT
5661758 TATTTAAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 20
0.65 0.10 0.25
Matches are distributed among these distances:
13 1 0.02
14 13 0.25
15 9 0.17
17 9 0.17
18 20 0.38
19 1 0.02
ACGTcount: A:0.54, C:0.11, G:0.01, T:0.34
Consensus pattern (18 bp):
AATAAATCAATTCATACT
Found at i:5661693 original size:22 final size:22
Alignment explanation
Indices: 5661524--5661684 Score: 169
Period size: 22 Copynumber: 7.0 Consensus size: 22
5661514 TAATAAATTA
5661524 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
5661546 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
* *
5661568 TTTAAAATAAATCAATTCATACAAC
1 TTTAAAATAAATCAATCCAT---AT
**
5661593 TACAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATCCATAT
* *
5661616 TTTAAAATAAATCAATTCATACAAC
1 TTTAAAATAAATCAATCCAT---AT
**
5661641 TACAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATCCATAT
*
5661664 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
5661685 CTAATAAATT
Statistics
Matches: 114, Mismatches: 17, Indels: 16
0.78 0.12 0.11
Matches are distributed among these distances:
22 70 0.61
23 8 0.07
25 8 0.07
26 28 0.25
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.34
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5661860 original size:15 final size:15
Alignment explanation
Indices: 5661831--5661913 Score: 80
Period size: 15 Copynumber: 5.5 Consensus size: 15
5661821 AATCCATACT
5661831 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
5661845 AATAAATTATTTTAA
1 AATAAATTATTTTAA
* ** *
5661860 AATAAATCAATCCATACT
1 AATAAAT-TAT-TTTA-A
*
5661878 AATAAATTA-TTAAA
1 AATAAATTATTTTAA
5661892 AATAAATTATTTTAA
1 AATAAATTATTTTAA
5661907 AATAAAT
1 AATAAAT
5661914 CAATCCATAT
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
14 18 0.33
15 24 0.44
16 2 0.04
17 3 0.06
18 7 0.13
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:5661950 original size:18 final size:18
Alignment explanation
Indices: 5661929--5662007 Score: 58
Period size: 22 Copynumber: 4.4 Consensus size: 18
5661919 CATATTTTAA
5661929 AATAAATCAATTCATACT
1 AATAAATCAATTCATACT
* *
5661947 AATAAAT-TATT--TA-A
1 AATAAATCAATTCATACT
* *
5661961 AATAAATCAATCCATATTTT
1 AATAAATCAATTCATA--CT
5661981 AAAATAAATCAATTCATACT
1 --AATAAATCAATTCATACT
5662001 AATAAAT
1 AATAAAT
5662008 TATTTAAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 16
0.67 0.10 0.23
Matches are distributed among these distances:
14 7 0.15
15 4 0.09
17 5 0.11
18 14 0.30
20 1 0.02
22 15 0.33
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.35
Consensus pattern (18 bp):
AATAAATCAATTCATACT
Found at i:5661953 original size:22 final size:22
Alignment explanation
Indices: 5661762--5661952 Score: 89
Period size: 22 Copynumber: 8.2 Consensus size: 22
5661752 ATAAATTATT
*
5661762 TAAAATAAATCAATCCATACAA
1 TAAAATAAATCAATCCATATAA
**
5661784 CTACAATAATAAATCAATCCATATTT
1 -T--AA-AATAAATCAATCCATATAA
5661810 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
* ** * ** **
5661833 TAAATTATTTAAAATAAATTATTT
1 TAAAATAAAT-CAATCCA-TATAA
5661857 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
** **
5661880 TAAATTATTAAA--AATAAATTATTT
1 TAAA--A-TAAATCAATCCA-TATAA
**
5661904 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5661926 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5661949 TAAA
1 TAAA
5661953 TTATTTAAAA
Statistics
Matches: 124, Mismatches: 30, Indels: 28
0.68 0.16 0.15
Matches are distributed among these distances:
21 4 0.03
22 42 0.34
23 29 0.23
24 21 0.17
25 8 0.06
26 20 0.16
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5661982 original size:22 final size:22
Alignment explanation
Indices: 5661956--5661998 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5661946 TAATAAATTA
5661956 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5661978 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
5661999 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5662007 original size:22 final size:22
Alignment explanation
Indices: 5661958--5662006 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5661948 ATAAATTATT
**
5661958 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5661980 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5662003 TAAA
1 TAAA
5662007 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5662018 original size:14 final size:14
Alignment explanation
Indices: 5662001--5662053 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
5661991 AATTCATACT
5662001 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5662015 AATAAATCAATCCTTACT
1 AATAAAT-TAT--TTA-A
5662033 AATAAATTATTTAA
1 AATAAATTATTTAA
5662047 AATAAAT
1 AATAAAT
5662054 CAATCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5662068 original size:22 final size:22
Alignment explanation
Indices: 5662042--5662084 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5662032 TAATAAATTA
5662042 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5662064 TTTAAAATAATTCAATCCATA
1 TTTAAAATAAATCAATCCATA
5662085 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5662093 original size:22 final size:22
Alignment explanation
Indices: 5662044--5662092 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5662034 ATAAATTATT
**
5662044 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5662066 TAAAATAATTCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5662089 TAAA
1 TAAA
5662093 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5662122 original size:22 final size:22
Alignment explanation
Indices: 5662096--5662138 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5662086 TAATAAATTA
5662096 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5662118 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
5662139 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5662147 original size:22 final size:22
Alignment explanation
Indices: 5662098--5662146 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5662088 ATAAATTATT
**
5662098 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5662120 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5662143 TAAA
1 TAAA
5662147 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5662208 original size:22 final size:22
Alignment explanation
Indices: 5662182--5662342 Score: 178
Period size: 22 Copynumber: 7.0 Consensus size: 22
5662172 TAATAAATTA
5662182 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
5662204 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5662226 TTTAAAATAAATCAATCCATACAAC
1 TTTAAAATAAATCAATCCAT---AT
**
5662251 TACAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATCCATAT
* *
5662274 TTTAAAATAAATCAATTCATACAAC
1 TTTAAAATAAATCAATCCAT---AT
**
5662299 TACAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATCCATAT
*
5662322 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
5662343 CTAATAAATT
Statistics
Matches: 116, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
22 71 0.61
23 8 0.07
25 8 0.07
26 29 0.25
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.33
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5662362 original size:14 final size:14
Alignment explanation
Indices: 5662345--5662461 Score: 54
Period size: 14 Copynumber: 7.5 Consensus size: 14
5662335 AATTCATACT
5662345 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5662359 AATAAATCAATTCATACT
1 AATAAAT-TATT--TA-A
*
5662377 AATAAAGTATTTAA
1 AATAAATTATTTAA
* *
5662391 AATAAATCAATTCATACT
1 AATAAAT-TATT--TA-A
5662409 AATAAATTATTTAA
1 AATAAATTATTTAA
* * *
5662423 AATAAATCAATCCATACT
1 AATAAAT-TAT--TTA-A
5662441 AATAAATTATTTAA
1 AATAAATTATTTAA
5662455 AATAAAT
1 AATAAAT
5662462 CAATTCATAT
Statistics
Matches: 75, Mismatches: 16, Indels: 24
0.65 0.14 0.21
Matches are distributed among these distances:
14 27 0.36
15 14 0.19
17 14 0.19
18 20 0.27
ACGTcount: A:0.55, C:0.09, G:0.01, T:0.36
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5662478 original size:22 final size:21
Alignment explanation
Indices: 5662448--5662492 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5662438 ACTAATAAAT
*
5662448 TATTTAAAATAAATCAATTCA
1 TATTTAAAATAAATCAATCCA
5662469 TATTATAAAATAAATCAATCCA
1 TATT-TAAAATAAATCAATCCA
5662491 TA
1 TA
5662493 CTAATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCCA
Found at i:5662501 original size:22 final size:22
Alignment explanation
Indices: 5662452--5662500 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
5662442 ATAAATTATT
* *
5662452 TAAAATAAATCAATTCATATTA
1 TAAAATAAATCAATCCATATAA
5662474 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5662497 TAAA
1 TAAA
5662501 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5662579 original size:22 final size:22
Alignment explanation
Indices: 5662506--5662579 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 22
5662496 ATAAATTATT
5662506 TAAAATAAATCAATCCATACAACTA
1 TAAAATAAATCAATCCAT---ACTA
* * *
5662531 CAATAATAAATCAATCCATATTT
1 TAA-AATAAATCAATCCATACTA
*
5662554 TAAAATAAATCAATTCATACTA
1 TAAAATAAATCAATCCATACTA
5662576 TAAA
1 TAAA
5662580 TTATTTAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
22 20 0.49
23 4 0.10
25 2 0.05
26 15 0.37
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAAATAAATCAATCCATACTA
Found at i:5662642 original size:21 final size:21
Alignment explanation
Indices: 5662612--5662696 Score: 73
Period size: 21 Copynumber: 3.9 Consensus size: 21
5662602 ACTAATAAAT
5662612 TATTTAAAATAAATCAATCTA
1 TATTTAAAATAAATCAATCTA
*
5662633 TATTTTAAATAAATCAATCCATA
1 TATTTAAAATAAATCAAT-C-TA
* ** *
5662656 CAACTACAATATAAATCAATCCA
1 TATTTA-AA-ATAAATCAATCTA
5662679 TATTTTAAAAT-AATCAAT
1 TA-TTTAAAATAAATCAAT
5662697 TCATACTAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
21 24 0.48
22 3 0.06
23 8 0.16
24 5 0.10
25 10 0.20
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (21 bp):
TATTTAAAATAAATCAATCTA
Found at i:5662741 original size:18 final size:18
Alignment explanation
Indices: 5662718--5662774 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
5662708 AATTATTTAA
5662718 AATAAATCAATCCTTACT
1 AATAAATCAATCCTTACT
* *
5662736 AATAAAT-TAT--TTA-A
1 AATAAATCAATCCTTACT
*
5662750 AATAAATCAATCCATACT
1 AATAAATCAATCCTTACT
5662768 AATAAAT
1 AATAAAT
5662775 TATTTAAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 7 0.23
15 5 0.17
17 4 0.13
18 14 0.47
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (18 bp):
AATAAATCAATCCTTACT
Found at i:5662793 original size:22 final size:22
Alignment explanation
Indices: 5662768--5662814 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
5662758 AATCCATACT
5662768 AATAAATTATT-TAAAATAAATC
1 AATAAA-TATTATAAAATAAATC
*
5662790 AATACATATTATAAAATAAATC
1 AATAAATATTATAAAATAAATC
5662812 AAT
1 AAT
5662815 CCATACTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (22 bp):
AATAAATATTATAAAATAAATC
Found at i:5662819 original size:22 final size:21
Alignment explanation
Indices: 5662775--5662819 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
5662765 ACTAATAAAT
5662775 TATTTAAAATAAATCAATACA
1 TATTTAAAATAAATCAATACA
*
5662796 TATTATAAAATAAATCAATCCA
1 TATT-TAAAATAAATCAATACA
5662818 TA
1 TA
5662820 CTAATACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (21 bp):
TATTTAAAATAAATCAATACA
Found at i:5662850 original size:22 final size:23
Alignment explanation
Indices: 5662822--5662894 Score: 60
Period size: 22 Copynumber: 3.1 Consensus size: 23
5662812 AATCCATACT
5662822 AATACATTA-TTTAAAATAAATC
1 AATACATTACTTTAAAATAAATC
* **
5662844 AATACATACAACTGCAATAATAAATC
1 AATACAT--TACTTTAA-AATAAATC
* *
5662870 AATCCA-TATTTTAAAATAAATC
1 AATACATTACTTTAAAATAAATC
5662892 AAT
1 AAT
5662895 TCATACTAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
22 18 0.46
23 4 0.10
24 1 0.03
25 3 0.08
26 13 0.33
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (23 bp):
AATACATTACTTTAAAATAAATC
Found at i:5662919 original size:14 final size:14
Alignment explanation
Indices: 5662902--5662954 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
5662892 AATTCATACT
5662902 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
5662916 AATAAATCAATCCTTACT
1 AATAAAT-TAT--TTA-A
5662934 AATAAATTATTTAA
1 AATAAATTATTTAA
5662948 AATAAAT
1 AATAAAT
5662955 CAATCCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 14 0.45
15 5 0.16
17 5 0.16
18 7 0.23
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:5662969 original size:22 final size:22
Alignment explanation
Indices: 5662943--5662985 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5662933 TAATAAATTA
5662943 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5662965 TTTAAAATAATTCAATCCATA
1 TTTAAAATAAATCAATCCATA
5662986 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5662994 original size:22 final size:22
Alignment explanation
Indices: 5662945--5662993 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5662935 ATAAATTATT
**
5662945 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5662967 TAAAATAATTCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5662990 TAAA
1 TAAA
5662994 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5663023 original size:22 final size:22
Alignment explanation
Indices: 5662997--5663039 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5662987 TAATAAATTA
5662997 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
5663019 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
5663040 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5663048 original size:22 final size:22
Alignment explanation
Indices: 5662999--5663047 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5662989 ATAAATTATT
**
5662999 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5663021 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5663044 TAAA
1 TAAA
5663048 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5663109 original size:22 final size:22
Alignment explanation
Indices: 5663083--5663243 Score: 162
Period size: 22 Copynumber: 7.0 Consensus size: 22
5663073 TAATAAATTA
*
5663083 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATTCATAT
5663105 TTTAAAATAAATCAA-TCAATAT
1 TTTAAAATAAATCAATTC-ATAT
*
5663127 TTTAAAATAAATCAATTCATACAAC
1 TTTAAAATAAATCAATTCAT---AT
** *
5663152 TACAATAATAAATCAATCCATAT
1 TTTAA-AATAAATCAATTCATAT
*
5663175 TTTAAAATAAATCAATTCATACAAC
1 TTTAAAATAAATCAATTCAT---AT
**
5663200 TACAATAATAAATCAATTCATAT
1 TTTAA-AATAAATCAATTCATAT
5663223 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATTCATA
5663244 CTAATAAATT
Statistics
Matches: 114, Mismatches: 15, Indels: 20
0.77 0.10 0.13
Matches are distributed among these distances:
21 1 0.01
22 66 0.58
23 10 0.09
25 8 0.07
26 29 0.25
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (22 bp):
TTTAAAATAAATCAATTCATAT
Found at i:5663262 original size:32 final size:32
Alignment explanation
Indices: 5663223--5663340 Score: 209
Period size: 32 Copynumber: 3.7 Consensus size: 32
5663213 CAATTCATAT
5663223 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATTCATACTAATAAATTA
* *
5663255 TTTAAAATAAATCAATACATACTAATAAAGTA
1 TTTAAAATAAATCAATTCATACTAATAAATTA
5663287 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATTCATACTAATAAATTA
*
5663319 TTTAAAATAAATCAATCCATAC
1 TTTAAAATAAATCAATTCATAC
5663341 AACTACAATA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 81 1.00
ACGTcount: A:0.53, C:0.11, G:0.01, T:0.35
Consensus pattern (32 bp):
TTTAAAATAAATCAATTCATACTAATAAATTA
Found at i:5663393 original size:18 final size:19
Alignment explanation
Indices: 5663349--5663396 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 19
5663339 ACAACTACAA
*
5663349 TAATAAATCAATCCATATTT
1 TAATAAATCAATCCATA-TC
5663369 TAAAATAAATCAATCCATA-C
1 T--AATAAATCAATCCATATC
5663389 TAATAAAT
1 TAATAAAT
5663397 TATTTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 7 0.28
20 2 0.08
22 16 0.64
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (19 bp):
TAATAAATCAATCCATATC
Found at i:5663419 original size:15 final size:15
Alignment explanation
Indices: 5663390--5663524 Score: 121
Period size: 15 Copynumber: 8.5 Consensus size: 15
5663380 AATCCATACT
5663390 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
5663404 AATAAATTATTTTAA
1 AATAAATTATTTTAA
* ** *
5663419 AATAAATCAATCCATACT
1 AATAAAT-TAT-TTTA-A
*
5663437 AATAAATTA-TTAAA
1 AATAAATTATTTTAA
5663451 AATAAATTATTTTAA
1 AATAAATTATTTTAA
5663466 AATAAATCAATCTATATTTTAA
1 AAT--A--AA--T-TATTTTAA
5663488 AATAAATTATTTTAA
1 AATAAATTATTTTAA
5663503 AATAAATTATTTTAA
1 AATAAATTATTTTAA
5663518 AATAAAT
1 AATAAAT
5663525 AACCTTATTA
Statistics
Matches: 99, Mismatches: 10, Indels: 23
0.75 0.08 0.17
Matches are distributed among these distances:
14 18 0.18
15 50 0.51
16 3 0.03
17 4 0.04
18 9 0.09
19 2 0.02
20 1 0.01
21 1 0.01
22 11 0.11
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (15 bp):
AATAAATTATTTTAA
Done.