Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10075380
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 42
Found at i:6562685 original size:6 final size:6
Alignment explanation
Indices: 6562674--6562699 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
6562664 AGGAATATTT
6562674 CATCTG CATCTG CATCTG CATCTG CA
1 CATCTG CATCTG CATCTG CATCTG CA
6562700 AATGATGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (6 bp):
CATCTG
Found at i:6564318 original size:92 final size:90
Alignment explanation
Indices: 6564131--6564306 Score: 239
Period size: 92 Copynumber: 1.9 Consensus size: 90
6564121 AAATGTTTAT
* **
6564131 AAAAATATTATTCCTCTGAAAATCACATTTCAATATATATTTTATTAAAATAAATTTCAATTTTA
1 AAAAATATTATTCCTCTGAAAATCACATTTCAATATATATTTTATTAAAATAAATATCAATTCCA
**
6564196 TTTTGATTTGCTTTTAATTATTAAA
66 TTGCGATTTGCTTTTAATTATTAAA
* *
6564221 AAAAATATTATTCCTAATTTGAAAAT-AGCATTTCAATAT-TATTTTATTAGAATAAATATCAAT
1 AAAAATATTATTCC---TCTGAAAATCA-CATTTCAATATATATTTTATTAAAATAAATATCAAT
6564284 TCCATTGCGATTTGCTTTTAATT
62 TCCATTGCGATTTGCTTTTAATT
6564307 CTTCCAGAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
90 14 0.19
92 42 0.56
93 19 0.25
ACGTcount: A:0.39, C:0.10, G:0.05, T:0.46
Consensus pattern (90 bp):
AAAAATATTATTCCTCTGAAAATCACATTTCAATATATATTTTATTAAAATAAATATCAATTCCA
TTGCGATTTGCTTTTAATTATTAAA
Found at i:6570897 original size:18 final size:18
Alignment explanation
Indices: 6570874--6570946 Score: 76
Period size: 18 Copynumber: 3.9 Consensus size: 18
6570864 ACTGAATATT
6570874 TGTCCCGAAAGACCACTA
1 TGTCCCGAAAGACCACTA
*
6570892 TGTCCCGAATGACCACTGA
1 TGTCCCGAAAGACCACT-A
* *
6570911 TTGTTCCG-AAGAACCACCA
1 -TGTCCCGAAAG-ACCACTA
*
6570930 TGTCCCGAAGGACCACT
1 TGTCCCGAAAGACCACT
6570947 GATAATACCT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
18 27 0.61
19 6 0.14
20 11 0.25
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (18 bp):
TGTCCCGAAAGACCACTA
Found at i:6577718 original size:18 final size:18
Alignment explanation
Indices: 6577695--6577745 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
6577685 TGAATATTTG
6577695 TCCCGAAAGACCACTATA
1 TCCCGAAAGACCACTATA
*
6577713 TCCCG-AAGAACCACTATG
1 TCCCGAAAG-ACCACTATA
* *
6577731 TTCCGAAGGACCACT
1 TCCCGAAAGACCACT
6577746 GATAATCCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 3 0.11
18 23 0.82
19 2 0.07
ACGTcount: A:0.33, C:0.33, G:0.16, T:0.18
Consensus pattern (18 bp):
TCCCGAAAGACCACTATA
Found at i:6578363 original size:19 final size:19
Alignment explanation
Indices: 6578334--6578404 Score: 115
Period size: 19 Copynumber: 3.7 Consensus size: 19
6578324 TTTAAGCAGG
*
6578334 TGCATCGATGCACTCCTTA
1 TGCACCGATGCACTCCTTA
*
6578353 TGCACCAATGCACTCCTTA
1 TGCACCGATGCACTCCTTA
6578372 TGCACCGATGCACTCCTTA
1 TGCACCGATGCACTCCTTA
*
6578391 TGCATCGATGCACT
1 TGCACCGATGCACT
6578405 AATTGCATTC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (19 bp):
TGCACCGATGCACTCCTTA
Found at i:6579610 original size:46 final size:46
Alignment explanation
Indices: 6579538--6579625 Score: 158
Period size: 46 Copynumber: 1.9 Consensus size: 46
6579528 AACGTGTTAA
*
6579538 TAATTTGCATCATGGTCGTTTGCTAACTTAGCCATATAACAAACAC
1 TAATTTGCATCATGGTCGTTTGCTAACTTAACCATATAACAAACAC
*
6579584 TAATTTGCATCATGGTCGTTTTCTAACTTAACCATATAACAA
1 TAATTTGCATCATGGTCGTTTGCTAACTTAACCATATAACAA
6579626 TTTTTGTAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.35
Consensus pattern (46 bp):
TAATTTGCATCATGGTCGTTTGCTAACTTAACCATATAACAAACAC
Found at i:6595066 original size:77 final size:76
Alignment explanation
Indices: 6594953--6595095 Score: 223
Period size: 76 Copynumber: 1.9 Consensus size: 76
6594943 CAATTATGTA
* * * *
6594953 AAAGCCCCTACTTACGACTGTCTCTGAGCGATAAAAAATGCAAACCCAGAAAGTGGTGAGAAAGT
1 AAAGCCCCTACTTACAACTGTCTCTGAGAGAT-AAAAATACAAACCCAGAAAGAGGTGAGAAAGT
6595018 AATTGCATAGAC
65 AATTGCATAGAC
* *
6595030 AAAGCCCCTACTTACAACTGTCTCTGGGAGATAAAAATACAAACCCAGAAAGAGGTGGGAAAGTA
1 AAAGCCCCTACTTACAACTGTCTCTGAGAGATAAAAATACAAACCCAGAAAGAGGTGAGAAAGTA
6595095 A
66 A
6595096 CTGCCTAAGG
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
76 31 0.52
77 29 0.48
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (76 bp):
AAAGCCCCTACTTACAACTGTCTCTGAGAGATAAAAATACAAACCCAGAAAGAGGTGAGAAAGTA
ATTGCATAGAC
Found at i:6597590 original size:14 final size:14
Alignment explanation
Indices: 6597571--6597629 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 14
6597561 ACTCGAAACA
6597571 AATTTTAAAAAAAT
1 AATTTTAAAAAAAT
6597585 AATTTTCATAAAATGAAT
1 AATTTT-A-AAAA--AAT
6597603 AGTATTTTAAAAAAAT
1 A--ATTTTAAAAAAAT
6597619 AATTTCTAAAA
1 AATTT-TAAAA
6597630 GTAATTTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
14 10 0.26
15 6 0.16
16 8 0.21
18 8 0.21
19 1 0.03
20 5 0.13
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.37
Consensus pattern (14 bp):
AATTTTAAAAAAAT
Found at i:6599382 original size:24 final size:22
Alignment explanation
Indices: 6599342--6599418 Score: 67
Period size: 24 Copynumber: 3.6 Consensus size: 22
6599332 ATGCAATTAA
6599342 TGCATCGATGCA---TAAGGAG
1 TGCATCGATGCACTGTAAGGAG
6599361 TGCATCGATGCACATGTTAAGG-G
1 TGCATCGATGCAC-TG-TAAGGAG
* *
6599384 ATGCATCGATACACTGT-A-GAA
1 -TGCATCGATGCACTGTAAGGAG
6599405 TGCATCGATGCACT
1 TGCATCGATGCACT
6599419 TCAAGGGAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
19 12 0.25
20 14 0.29
21 1 0.02
22 1 0.02
23 3 0.06
24 17 0.35
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (22 bp):
TGCATCGATGCACTGTAAGGAG
Found at i:6600409 original size:19 final size:19
Alignment explanation
Indices: 6600372--6600409 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
6600362 TAGAATGAGG
*
6600372 TATAAGCTATATGATATGA
1 TATAAGCTATATAATATGA
6600391 TATAAGCTAT-TAATCATGA
1 TATAAGCTATATAAT-ATGA
6600410 CATATGAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (19 bp):
TATAAGCTATATAATATGA
Found at i:6600552 original size:2 final size:2
Alignment explanation
Indices: 6600545--6600573 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6600535 GAACATGTGA
6600545 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6600574 GGATAAGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6602106 original size:2 final size:2
Alignment explanation
Indices: 6602092--6602127 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
6602082 GATCTTAACC
*
6602092 AT AT AT TT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6602128 CTGTTTTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6603802 original size:17 final size:18
Alignment explanation
Indices: 6603776--6603816 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
6603766 TAAAAGTGTA
6603776 AAATAT-ATTAAATAA-T
1 AAATATAATTAAATAACT
*
6603792 AAATATAATTATATAACT
1 AAATATAATTAAATAACT
6603810 AAA-ATAA
1 AAATATAA
6603817 ACAAGCAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 6 0.27
17 12 0.55
18 4 0.18
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
AAATATAATTAAATAACT
Found at i:6611027 original size:21 final size:20
Alignment explanation
Indices: 6611003--6611041 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
6610993 GCTTTTAGTT
*
6611003 GATTCACATATTGCTAATTTG
1 GATTCAAATATT-CTAATTTG
6611024 GATTCAAATATTCTAATT
1 GATTCAAATATTCTAATT
6611042 GCTAACTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (20 bp):
GATTCAAATATTCTAATTTG
Found at i:6612550 original size:13 final size:14
Alignment explanation
Indices: 6612526--6612554 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
6612516 TAAAATTGAT
6612526 TATACACGTATACG
1 TATACACGTATACG
6612540 TATAC-CGTATACG
1 TATACACGTATACG
6612553 TA
1 TA
6612555 CATAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (14 bp):
TATACACGTATACG
Found at i:6612782 original size:59 final size:59
Alignment explanation
Indices: 6612728--6612845 Score: 137
Period size: 59 Copynumber: 2.0 Consensus size: 59
6612718 TAAATGTTTC
* * *
6612728 TCTGATTATAAAATAATACTTTATTGAGTCTCCAACTATTAAAAATTACAAAATGATCA
1 TCTGACTATAAAACAATACTTTATTGAGTCACCAACTATTAAAAATTACAAAATGATCA
* * * * * * * *
6612787 TTTGACTATGAAACATTATTTTGTTGAGTCACCGACTATTAAAAGTTACAAAATAATCA
1 TCTGACTATAAAACAATACTTTATTGAGTCACCAACTATTAAAAATTACAAAATGATCA
6612846 CCAAACTATT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
59 48 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.36
Consensus pattern (59 bp):
TCTGACTATAAAACAATACTTTATTGAGTCACCAACTATTAAAAATTACAAAATGATCA
Found at i:6620610 original size:36 final size:36
Alignment explanation
Indices: 6620570--6620640 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
6620560 CGATTCAAGC
* *
6620570 TCGAAATAAAAAATTAAACTTCGACTTGATTCGAAT
1 TCGAAATAAAAAATTAAACTTCGACTCGACTCGAAT
* *
6620606 TCGAAATAAAAAATTTAACTTTGACTCGACTCGAA
1 TCGAAATAAAAAATTAAACTTCGACTCGACTCGAA
6620641 AGCTCCCGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (36 bp):
TCGAAATAAAAAATTAAACTTCGACTCGACTCGAAT
Found at i:6622248 original size:20 final size:20
Alignment explanation
Indices: 6622225--6622278 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
6622215 GATTCTGATT
* *
6622225 ATCGCATTGCGATTACGTAA
1 ATCGCAATGCGAATACGTAA
6622245 ATCGCAATGCGAATACGTAA
1 ATCGCAATGCGAATACGTAA
6622265 ATCGCAATGCGAAT
1 ATCGCAATGCGAAT
6622279 CTGACTATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGAATACGTAA
Found at i:6622292 original size:20 final size:20
Alignment explanation
Indices: 6622265--6622352 Score: 113
Period size: 20 Copynumber: 4.4 Consensus size: 20
6622255 GAATACGTAA
*
6622265 ATCGCAATGCGAATCTGACT
1 ATCGCAATGAGAATCTGACT
* * *
6622285 ATCACAATGCGAATTTGACT
1 ATCGCAATGAGAATCTGACT
*
6622305 ATCGCAATGAGATTCTGACT
1 ATCGCAATGAGAATCTGACT
* *
6622325 ATCGCAACGAGATTCTGACT
1 ATCGCAATGAGAATCTGACT
6622345 ATCGCAAT
1 ATCGCAAT
6622353 ACTGAATTTC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (20 bp):
ATCGCAATGAGAATCTGACT
Found at i:6626497 original size:42 final size:42
Alignment explanation
Indices: 6626418--6626510 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
6626408 CCTCTTCAAC
* * *
6626418 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
* * **
6626460 GATGATAGGGGCCTCTTGAACGATAGGG-GAGGCCTCTTGAAC
1 GATGACAGGGGCCTCTTGAACGAT-GGGAGAGGACTCTTGAGG
6626502 GATGACAGG
1 GATGACAGG
6626511 TGAGTCGGGT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 39 0.93
43 3 0.07
ACGTcount: A:0.23, C:0.17, G:0.40, T:0.20
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
Found at i:6627077 original size:20 final size:20
Alignment explanation
Indices: 6626990--6627101 Score: 143
Period size: 20 Copynumber: 5.6 Consensus size: 20
6626980 GAAACTTAAA
* *
6626990 ATCGCAACGCAAAAATGACT
1 ATCGCAATGCGAAAATGACT
*
6627010 ATCGCAACGCGAAAATGACT
1 ATCGCAATGCGAAAATGACT
*
6627030 ATCGCAATGCAAAAATGACT
1 ATCGCAATGCGAAAATGACT
**
6627050 ATCGCAATGCGAATTTGACT
1 ATCGCAATGCGAAAATGACT
** *
6627070 ATCGCAATGCGAATTTAACT
1 ATCGCAATGCGAAAATGACT
6627090 ATCGCAATGCGA
1 ATCGCAATGCGA
6627102 TTTTCATTTC
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 85 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.21
Consensus pattern (20 bp):
ATCGCAATGCGAAAATGACT
Found at i:6627154 original size:20 final size:20
Alignment explanation
Indices: 6627129--6627303 Score: 135
Period size: 20 Copynumber: 9.4 Consensus size: 20
6627119 GATTCTTTCG
* **
6627129 TTGCGATAATCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
6627149 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
6627169 TTACGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
6627189 TTACGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
6627209 ATGCGAT--T--TTGTT-G--
1 TTGCGATAGTCATT-TTCGCA
**
6627223 TTGCGATTTTCA-TTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
6627242 TTGCGAT--TC--TCTCG--
1 TTGCGATAGTCATTTTCGCA
*
6627256 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
*
6627276 TTGCGATAGTCATTTTCGAA
1 TTGCGATAGTCATTTTCGCA
*
6627296 TTACGATA
1 TTGCGATA
6627304 ATAAACTATT
Statistics
Matches: 129, Mismatches: 12, Indels: 28
0.76 0.07 0.17
Matches are distributed among these distances:
14 13 0.10
16 12 0.09
17 6 0.05
18 5 0.04
19 7 0.05
20 86 0.67
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:6627247 original size:33 final size:34
Alignment explanation
Indices: 6627149--6627282 Score: 117
Period size: 33 Copynumber: 3.8 Consensus size: 34
6627139 CAAATTCGCA
* *
6627149 TTGCGATAGTCATTTTCGCATTACGATAGTCATTTTCG
1 TTGCGATAGTCATTTTCGCATTGCGAT--TC--TCTCG
* * * * *
6627187 CATTACGATAGTCATTTTCGCAATGCGATTTTGTTG
1 --TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
**
6627223 TTGCGATTTTCA-TTTCGCATTGCGATTCTCTCG
1 TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
*
6627256 TTGCGATAGTCATTTTCGCGTTGCGAT
1 TTGCGATAGTCATTTTCGCATTGCGAT
6627283 AGTCATTTTC
Statistics
Matches: 77, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
33 27 0.35
34 22 0.29
36 3 0.04
38 1 0.01
40 24 0.31
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (34 bp):
TTGCGATAGTCATTTTCGCATTGCGATTCTCTCG
Found at i:6629243 original size:20 final size:20
Alignment explanation
Indices: 6629185--6629254 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
6629175 GAAACTTTAA
* **
6629185 ATCGCAACACGAAAATGAAA
1 ATCGCAACGCGAAAATGACT
*
6629205 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAAATGACT
**
6629225 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
6629245 ATCGCAACGC
1 ATCGCAACGC
6629255 AAGAATCGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.41, C:0.26, G:0.17, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:6629293 original size:33 final size:33
Alignment explanation
Indices: 6629184--6629297 Score: 95
Period size: 33 Copynumber: 3.2 Consensus size: 33
6629174 TGAAACTTTA
* *
6629184 AATCGCAACACGAAAATGAAAATCGCAACACGAAAATG
1 AATCGCAACGCG-AAATGAAAATCGC-A-ACG-ACA-G
* **
6629222 ACTATCGCAACGCGAATTTGACTATCGCAACG-CAAG
1 A--ATCGCAACGCGAA-ATGAAAATCGCAACGAC-AG
6629258 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
6629291 AATCGCA
1 AATCGCA
6629298 TTGCGATAGT
Statistics
Matches: 63, Mismatches: 8, Indels: 15
0.73 0.09 0.17
Matches are distributed among these distances:
33 21 0.33
34 14 0.22
36 2 0.03
37 1 0.02
38 4 0.06
39 3 0.05
40 18 0.29
ACGTcount: A:0.44, C:0.25, G:0.18, T:0.13
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGACAG
Found at i:6629869 original size:20 final size:18
Alignment explanation
Indices: 6629844--6629955 Score: 80
Period size: 20 Copynumber: 5.6 Consensus size: 18
6629834 GCTATGTAAA
6629844 TCGCATTGCGATAGTCAGAT
1 TCGCATTGCGAT--TCAGAT
*
6629864 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTCA-G-AT
*
6629884 TCGCATTGCGATTTACATAT
1 TCGCATTGCGA-TT-CAGAT
*
6629904 TCGCATTGCGATTTTTCAAAT
1 TCGCATTGCGA---TTCAGAT
* *
6629925 TCGCGTTGCGATTTACGTAT
1 TCGCATTGCGATTCA-G-AT
6629945 TCGCATTGCGA
1 TCGCATTGCGA
6629956 ATTAGGAAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
18 5 0.07
19 1 0.01
20 50 0.66
21 16 0.21
22 4 0.05
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (18 bp):
TCGCATTGCGATTCAGAT
Found at i:6629939 original size:41 final size:40
Alignment explanation
Indices: 6629844--6629955 Score: 136
Period size: 41 Copynumber: 2.8 Consensus size: 40
6629834 GCTATGTAAA
* * **
6629844 TCGCATTGCGATAGT-CAGATTCGCATTGCGATTTACGTAT
1 TCGCATTGCGAT-TTACATATTCGCATTGCGATTTACAAAT
*
6629884 TCGCATTGCGATTTACATATTCGCATTGCGATTTTTCAAAT
1 TCGCATTGCGATTTACATATTCGCATTGCGA-TTTACAAAT
* *
6629925 TCGCGTTGCGATTTACGTATTCGCATTGCGA
1 TCGCATTGCGATTTACATATTCGCATTGCGA
6629956 ATTAGGAAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.02
40 27 0.43
41 35 0.56
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (40 bp):
TCGCATTGCGATTTACATATTCGCATTGCGATTTACAAAT
Found at i:6630346 original size:5 final size:5
Alignment explanation
Indices: 6630336--6630361 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
6630326 TTCTGTTGAT
6630336 GAGGA GAGGA GAGGA GAGGA GAGGA G
1 GAGGA GAGGA GAGGA GAGGA GAGGA G
6630362 GTGCGGTGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (5 bp):
GAGGA
Found at i:6630621 original size:2 final size:2
Alignment explanation
Indices: 6630614--6630662 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
6630604 AAACCGTGTT
* *
6630614 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GT GT GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
6630656 GA GA GA G
1 GA GA GA G
6630663 CGATTTAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.45, C:0.00, G:0.51, T:0.04
Consensus pattern (2 bp):
GA
Found at i:6662873 original size:16 final size:16
Alignment explanation
Indices: 6662828--6662873 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
6662818 AATTTCTATC
6662828 AATAAT-AAATTTT-A
1 AATAATAAAATTTTAA
**
6662842 AATAATAAAAAGTTAA
1 AATAATAAAATTTTAA
*
6662858 AATTATAAAATTTTAA
1 AATAATAAAATTTTAA
6662874 CTATCAAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
14 6 0.24
15 5 0.20
16 14 0.56
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
AATAATAAAATTTTAA
Found at i:6674749 original size:17 final size:17
Alignment explanation
Indices: 6674724--6674757 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6674714 TTGAATATTT
*
6674724 TGGAATGTTTGATTTTG
1 TGGAATGTTGGATTTTG
*
6674741 TGGATTGTTGGATTTTG
1 TGGAATGTTGGATTTTG
6674758 GATTTATGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.32, T:0.53
Consensus pattern (17 bp):
TGGAATGTTGGATTTTG
Found at i:6675428 original size:20 final size:20
Alignment explanation
Indices: 6675381--6675420 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
6675371 AGATTGCTCA
*
6675381 AAGGGAACCGATTCCCCCCC
1 AAGGGTACCGATTCCCCCCC
6675401 AAGGGGGTACCGATTCCCCC
1 AA--GGGTACCGATTCCCCC
6675421 TGAAGGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
22 15 0.88
ACGTcount: A:0.23, C:0.40, G:0.25, T:0.12
Consensus pattern (20 bp):
AAGGGTACCGATTCCCCCCC
Found at i:6701981 original size:20 final size:20
Alignment explanation
Indices: 6701956--6702047 Score: 83
Period size: 20 Copynumber: 5.0 Consensus size: 20
6701946 TCTGTTAGTT
6701956 ATTAGATAGGATCAGTTTTA
1 ATTAGATAGGATCAGTTTTA
* *
6701976 ATTAGATAGAATCAGTTTTT
1 ATTAGATAGGATCAGTTTTA
* *
6701996 ATT--CT--G-TTAG--TT-
1 ATTAGATAGGATCAGTTTTA
6702008 ATTAGATAGGATCAGTTTTA
1 ATTAGATAGGATCAGTTTTA
*
6702028 ATTAGATAGAATCAGTTTTA
1 ATTAGATAGGATCAGTTTTA
6702048 TTCTGTTGCT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
12 3 0.05
13 2 0.04
14 1 0.02
15 3 0.05
16 1 0.02
17 3 0.05
18 1 0.02
19 2 0.04
20 40 0.71
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.43
Consensus pattern (20 bp):
ATTAGATAGGATCAGTTTTA
Found at i:6702002 original size:52 final size:51
Alignment explanation
Indices: 6701940--6702054 Score: 221
Period size: 52 Copynumber: 2.2 Consensus size: 51
6701930 TAACTAGATA
6701940 TTTTATTCTGTTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATCAG
1 TTTTATTCTGTTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATCAG
6701991 TTTTTATTCTGTTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATCAG
1 -TTTTATTCTGTTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATCAG
6702043 TTTTATTCTGTT
1 TTTTATTCTGTT
6702055 GCTAATTTTA
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 12 0.19
52 51 0.81
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.49
Consensus pattern (51 bp):
TTTTATTCTGTTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATCAG
Found at i:6705377 original size:35 final size:34
Alignment explanation
Indices: 6705296--6705378 Score: 96
Period size: 34 Copynumber: 2.4 Consensus size: 34
6705286 TTACGGAAGA
* **
6705296 CAATTCACGTTTTATGTGCATTTTAGCCATAGCT
1 CAATTCACGTTTTATGTGCACTGAAGCCATAGCT
* *
6705330 TAATTCACGTTTTATGTGCACTGAAGTC-TGAAGCT
1 CAATTCACGTTTTATGTGCACTGAAGCCAT--AGCT
6705365 CAATTCACGTTTTA
1 CAATTCACGTTTTA
6705379 ATTTGATGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
33 1 0.02
34 23 0.56
35 17 0.41
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (34 bp):
CAATTCACGTTTTATGTGCACTGAAGCCATAGCT
Found at i:6705833 original size:44 final size:45
Alignment explanation
Indices: 6705784--6705874 Score: 148
Period size: 44 Copynumber: 2.0 Consensus size: 45
6705774 CAAAAATTGG
*
6705784 TTGTTAGGATTTGAGGTTGAAGGT-AATATTACAATTCTTAATGT
1 TTGTTAGAATTTGAGGTTGAAGGTAAATATTACAATTCTTAATGT
* *
6705828 TTGTTATAATTTGAGGTTGAAGGTAAATATTATAATTCTTAATGT
1 TTGTTAGAATTTGAGGTTGAAGGTAAATATTACAATTCTTAATGT
6705873 TT
1 TT
6705875 AGTAAAATTG
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
44 22 0.51
45 21 0.49
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (45 bp):
TTGTTAGAATTTGAGGTTGAAGGTAAATATTACAATTCTTAATGT
Found at i:6706090 original size:42 final size:42
Alignment explanation
Indices: 6706047--6706156 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
6706037 TGATGTTTAT
6706047 TTTA-TTTAGACTTATTAAGACTTATTAGTGTTACAATGTTA
1 TTTATTTTAGACTTATTAAGACTTATTAGTGTTACAATGTTA
* *** ***
6706088 TTTATTTTAGACTTA-TAGAGAATTAACGGTGTTATGGTGTTA
1 TTTATTTTAGACTTATTA-AGACTTATTAGTGTTACAATGTTA
*
6706130 TTTATTTTAGACTTATTGAGACTTATT
1 TTTATTTTAGACTTATTAAGACTTATT
6706157 GATAAGATGC
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
41 6 0.11
42 48 0.87
43 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.15, T:0.49
Consensus pattern (42 bp):
TTTATTTTAGACTTATTAAGACTTATTAGTGTTACAATGTTA
Found at i:6708124 original size:21 final size:21
Alignment explanation
Indices: 6708084--6708124 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6708074 TATGGGCTAA
*
6708084 GGGAATCGATACCCATTCAAG
1 GGGAATCGATACCCACTCAAG
*
6708105 GGGAATCGATACCCCCTCAA
1 GGGAATCGATACCCACTCAA
6708125 ACGAATATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.22, T:0.17
Consensus pattern (21 bp):
GGGAATCGATACCCACTCAAG
Found at i:6708177 original size:20 final size:20
Alignment explanation
Indices: 6708152--6708189 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6708142 GAACGCTAGA
*
6708152 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
6708172 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
6708190 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:6708896 original size:103 final size:103
Alignment explanation
Indices: 6708671--6708888 Score: 391
Period size: 103 Copynumber: 2.1 Consensus size: 103
6708661 GTAGAGGGTC
* *
6708671 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACCTAC
1 TATGTGGTCCTTCGGGACATATATGCATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
*
6708736 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
* *
6708774 TTTGTGGTCCTTCGGGACATATATGCATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATGC
1 TATGTGGTCCTTCGGGACATATATGCATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
6708839 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
6708877 TATGTGGTCCTT
1 TATGTGGTCCTT
6708889 ATGGACATTA
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 109 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGCATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:6708938 original size:23 final size:23
Alignment explanation
Indices: 6708905--6708972 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
6708895 ATTATTATAT
6708905 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* * *
6708928 GGCACTCCGGTGCAATTCTAAGT
1 GGCACTACGGTGCAATTCTACGC
*
6708951 GGCACTTA-GGTGCAATTATACG
1 GGCAC-TACGGTGCAATTCTACG
6708973 AGTTGTGGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 37 0.97
24 1 0.03
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:6715122 original size:13 final size:13
Alignment explanation
Indices: 6715104--6715136 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
6715094 CATCTTCATC
6715104 TTTCTTT-ATTTAT
1 TTTCTTTCA-TTAT
6715117 TTTCTTTCATTAT
1 TTTCTTTCATTAT
6715130 TTTCTTT
1 TTTCTTT
6715137 TCAAAATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 18 0.95
14 1 0.05
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTCTTTCATTAT
Found at i:6720619 original size:606 final size:605
Alignment explanation
Indices: 6718823--6720634 Score: 3409
Period size: 605 Copynumber: 3.0 Consensus size: 605
6718813 CTTAACCGTT
6718823 GACTTCCGTTAGTTTGATGATATGTCACATTAGTAAAAGGTTTAA-TTTTTACTTTAACCCATGA
1 GACTTCCGTTAGTTTGATGATATGTCACATTAGTAAAAGGTTTAATTTTTTACTTTAACCCATGA
*
6718887 AGTAGATAAACTACTAATTAGAGATCATTTTATAAATTCAAAATAATTTAAGGACAAAATTCTAA
66 ACTAGATAAACTACTAATTAGAGATCATTTTATAAATTCAAAATAATTTAAGGACAAAATTCTAA
6718952 TTTACCCTTTTATATGTTTTAAGTTTCTTTATCCAACGGCTAAAAGATTGCAATCTAT--AAAAA
131 TTTACCCTTTTATATGTTTTAAGTTTCTTTATCCAACGGCTAAAAGATTGCAATCTATAAAAAAA
*
6719015 ATAAGAGGTGTTTGGATTTCTCCGTCTTCGATTAATAATGGTTTGTTCTTCGTTCAATAACAATG
196 ATAAGAGGTGTTTGGATTTCTTCGTCTTCGATTAATAATGGTTTGTTCTTCGTTCAATAACAATG
*
6719080 GCGTTTAGAGTAGTGACCACAGATGAACGATGGTCGGCTGTGTGAGTTTAGGTCTTCAAAGGTCA
261 GCGTTTAGAGTAGTGACCACAGATGAACGATGGTCGGTTGTGTGAGTTTAGGTCTTCAAAGGTCA
6719145 TGACTGTAAAGAAGAGGGAGGTGTGC-GTTGCAAGAAGATGAAGTTGGGG-AAAAACATATAAAA
326 TGACTGTAAAGAAGAGGGAGGTGT-CTGTTGCAAGAAGATGAAGTTGGGGAAAAAACATATAAAA
6719208 AGGTAAATTAGATCTTTGTCCCTTTTACTAACGTGTTACGTCATCAAATTAACGGAAGTCAATAT
390 AGGTAAATTAGATCTTTGTCCCTTTTACTAACGTGTTACGTCATCAAATTAACGGAAGTCAATAT
6719273 TTCAGTGGCCACATTTTAATTAAAACAAGACGAAAGTGACTACAAATTATGTTTTTTTAATCGAG
455 TTCAGTGGCCACATTTTAATTAAAACAAGACGAAAGTGACTACAAATTATGTTTTTTTAATCGAG
*
6719338 TGACCATACATTTCTAAAACTAAAACAAAAATGATCATCTTTGTAGTTTACCCTTAAATTTATTA
520 TGACCATACATTTCTAAAACTAAAACAAAAATGACCATCTTTGTAGTTTACCCTTAAATTTATTA
6719403 TAGTCTTCTATATACTGTGAA
585 TAGTCTTCTATATACTGTGAA
*
6719424 GACTTCCGTTAGTTTGATGATATGTCACATTAGTAAAAGGTTTATTTTTTTACTTTAACCCATGA
1 GACTTCCGTTAGTTTGATGATATGTCACATTAGTAAAAGGTTTAATTTTTTACTTTAACCCATGA
6719489 ACTAGATAAACTACTAATTAGAGATCATTTTATAAATTCAAAATAATTTAAGGACAAAATTCTAA
66 ACTAGATAAACTACTAATTAGAGATCATTTTATAAATTCAAAATAATTTAAGGACAAAATTCTAA
6719554 TTTACCCTTTTATATGTTTTAAGTTTCTTTATCCAACGGCTAAAAGATTGCAATCTATAAAAAAA
131 TTTACCCTTTTATATGTTTTAAGTTTCTTTATCCAACGGCTAAAAGATTGCAATCTATAAAAAAA
*
6719619 ATAAGAGGTATTTGGATTTCTTCGTCTTCGATTAATAATGGTTTGTTCTTCGTTCAATAACAATG
196 ATAAGAGGTGTTTGGATTTCTTCGTCTTCGATTAATAATGGTTTGTTCTTCGTTCAATAACAATG
*
6719684 GCGTTTAGAGTAGTGACCACAGATGAACAATGGTCGGTTGTGTGAGTTTAGGTCTTCAAAGGTCA
261 GCGTTTAGAGTAGTGACCACAGATGAACGATGGTCGGTTGTGTGAGTTTAGGTCTTCAAAGGTCA
6719749 TGACTGTAAAGAAGAGGGAGGTGTCTGTTGCAAGAAGATGAAGTTGGGGAAAAAACATATAAAAA
326 TGACTGTAAAGAAGAGGGAGGTGTCTGTTGCAAGAAGATGAAGTTGGGGAAAAAACATATAAAAA
** *
6719814 GGTAAATTAGATCTTTGTCCCTTTTACTAACGTGTTACGTCATCAAATTAATAGAAGTCAATGTT
391 GGTAAATTAGATCTTTGTCCCTTTTACTAACGTGTTACGTCATCAAATTAACGGAAGTCAATATT
6719879 TCAGTGGCCACATTTTAATTAAAACAAGACGAAAGTGACTACAAATTATGTTTTTTTAATCGAGT
456 TCAGTGGCCACATTTTAATTAAAACAAGACGAAAGTGACTACAAATTATGTTTTTTTAATCGAGT
6719944 GACCATACATTTCTAAAACTAAAACAAAAATGACCATCTTTGTAGTTTACCCTTAAATTTATTAT
521 GACCATACATTTCTAAAACTAAAACAAAAATGACCATCTTTGTAGTTTACCCTTAAATTTATTAT
6720009 AGTCTTCTATATACTGTGAA
586 AGTCTTCTATATACTGTGAA
*
6720029 GACTTCCATTAGTTTGATGATATGTCACATTAGTAAAAGGTTTAATTTTTTACTTTAACCCATGA
1 GACTTCCGTTAGTTTGATGATATGTCACATTAGTAAAAGGTTTAATTTTTTACTTTAACCCATGA
6720094 ACTAGATAAACTACTAATTAGAGATCATTTTATAAATTCAAAATAATTTAAGGACAAAATTCTAA
66 ACTAGATAAACTACTAATTAGAGATCATTTTATAAATTCAAAATAATTTAAGGACAAAATTCTAA
*
6720159 TTTACCCTTTTATATGTTTTAAGTTTCTTTATCCAACGACTAAAAGATTGCAATCTATAAAAAAA
131 TTTACCCTTTTATATGTTTTAAGTTTCTTTATCCAACGGCTAAAAGATTGCAATCTATAAAAAAA
6720224 ATAAGAGGTGTTTGGATTTCTTCGTCTTCGATTAATAATGGTTTGTTCTTCGTTCAATAACAATG
196 ATAAGAGGTGTTTGGATTTCTTCGTCTTCGATTAATAATGGTTTGTTCTTCGTTCAATAACAATG
*
6720289 GCGTTTAGAGTAGTGACCACAGATGAACGGTGGTCGGTTGTGTGAGTTTAGGTCTTCAAAGGTCA
261 GCGTTTAGAGTAGTGACCACAGATGAACGATGGTCGGTTGTGTGAGTTTAGGTCTTCAAAGGTCA
* *
6720354 TGACTGTAGAGAAGAGGGAGGTGTCTGTTGCAAGAAGATAAAGTTGGGGAAAAAAACATATAAAA
326 TGACTGTAAAGAAGAGGGAGGTGTCTGTTGCAAGAAGATGAAGTTGGGG-AAAAAACATATAAAA
*
6720419 AGGTAAATTAGATCTTTGTCCCTTTTACAAACGTGTTACGTCATCAAATTAACGGAAGTCAATAT
390 AGGTAAATTAGATCTTTGTCCCTTTTACTAACGTGTTACGTCATCAAATTAACGGAAGTCAATAT
6720484 TTCAGTGGCCACATTTTAATTAAAACAAGACGAAAGTGACTACAAATTATGTTTTTTTAATCGAG
455 TTCAGTGGCCACATTTTAATTAAAACAAGACGAAAGTGACTACAAATTATGTTTTTTTAATCGAG
*
6720549 TGACCATATATTTCTAAAACTAAAACAAAAATGACCATCTTTGTAGTTTACCCTTAAATTTATTA
520 TGACCATACATTTCTAAAACTAAAACAAAAATGACCATCTTTGTAGTTTACCCTTAAATTTATTA
*
6720614 TAGTCTTCTATTTACTGTGAA
585 TAGTCTTCTATATACTGTGAA
6720635 ATTTATTATA
Statistics
Matches: 1181, Mismatches: 24, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
601 44 0.04
602 141 0.12
603 1 0.00
604 178 0.15
605 592 0.50
606 225 0.19
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (605 bp):
GACTTCCGTTAGTTTGATGATATGTCACATTAGTAAAAGGTTTAATTTTTTACTTTAACCCATGA
ACTAGATAAACTACTAATTAGAGATCATTTTATAAATTCAAAATAATTTAAGGACAAAATTCTAA
TTTACCCTTTTATATGTTTTAAGTTTCTTTATCCAACGGCTAAAAGATTGCAATCTATAAAAAAA
ATAAGAGGTGTTTGGATTTCTTCGTCTTCGATTAATAATGGTTTGTTCTTCGTTCAATAACAATG
GCGTTTAGAGTAGTGACCACAGATGAACGATGGTCGGTTGTGTGAGTTTAGGTCTTCAAAGGTCA
TGACTGTAAAGAAGAGGGAGGTGTCTGTTGCAAGAAGATGAAGTTGGGGAAAAAACATATAAAAA
GGTAAATTAGATCTTTGTCCCTTTTACTAACGTGTTACGTCATCAAATTAACGGAAGTCAATATT
TCAGTGGCCACATTTTAATTAAAACAAGACGAAAGTGACTACAAATTATGTTTTTTTAATCGAGT
GACCATACATTTCTAAAACTAAAACAAAAATGACCATCTTTGTAGTTTACCCTTAAATTTATTAT
AGTCTTCTATATACTGTGAA
Found at i:6722394 original size:2 final size:2
Alignment explanation
Indices: 6722382--6722416 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
6722372 CCCATTTTAA
6722382 CT CT C- CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
6722417 TCCTTTCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:6738344 original size:31 final size:32
Alignment explanation
Indices: 6738309--6738369 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
6738299 AAAAATATTT
* *
6738309 TTAAAT-TTAAAATA-TAAAAATATTCAAAAAA
1 TTAAATATAAAAATACTAAAAAAATT-AAAAAA
6738340 TTAAATATAAAAATACTAAAAAAATTAAAA
1 TTAAATATAAAAATACTAAAAAAATTAAAA
6738370 TGTAATTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 6 0.23
32 11 0.42
33 9 0.35
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (32 bp):
TTAAATATAAAAATACTAAAAAAATTAAAAAA
Found at i:6738370 original size:25 final size:25
Alignment explanation
Indices: 6738315--6738370 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 25
6738305 ATTTTTAAAT
* *
6738315 TTAAAATATAAAAATATTCAAAAAA
1 TTAAAATATAAAAATACTAAAAAAA
6738340 TT-AAATATAAAAATACTAAAAAAA
1 TTAAAATATAAAAATACTAAAAAAA
6738364 TTAAAAT
1 TTAAAAT
6738371 GTAATTACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 22 0.79
25 6 0.21
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (25 bp):
TTAAAATATAAAAATACTAAAAAAA
Found at i:6741130 original size:18 final size:19
Alignment explanation
Indices: 6741090--6741131 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
6741080 ATTATGAATA
6741090 GAAAATACAGACAAAATTT
1 GAAAATACAGACAAAATTT
* *
6741109 -AAAATATAGA-AGAATTT
1 GAAAATACAGACAAAATTT
6741126 GAAAAT
1 GAAAAT
6741132 TTCAAGAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.24
Consensus pattern (19 bp):
GAAAATACAGACAAAATTT
Found at i:6749355 original size:27 final size:27
Alignment explanation
Indices: 6749324--6749379 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
6749314 TAGATCATTA
6749324 CAGGCAGAGTTCAGTTAATAATTAATC
1 CAGGCAGAGTTCAGTTAATAATTAATC
6749351 CAGGCAGAGTTCAGTTAATAATTAATC
1 CAGGCAGAGTTCAGTTAATAATTAATC
6749378 CA
1 CA
6749380 TAACAAGCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (27 bp):
CAGGCAGAGTTCAGTTAATAATTAATC
Found at i:6756392 original size:58 final size:58
Alignment explanation
Indices: 6756319--6756433 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
6756309 AATTATTATT
* * *
6756319 TTTTATTTTATTTTAATATCCAAATTTTAATTTTTTAAAAATCATACATAATTTTTAG
1 TTTTATTTTATTTTAATATACAAATTTTAATTTTTAAAAAATCATACATAACTTTTAG
*
6756377 TTTTATTTTATTTTAATATATAAATTTTAATTTTTAAAAAATCATACATAACTTTTA
1 TTTTATTTTATTTTAATATACAAATTTTAATTTTTAAAAAATCATACATAACTTTTA
6756434 ATTTAAATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (58 bp):
TTTTATTTTATTTTAATATACAAATTTTAATTTTTAAAAAATCATACATAACTTTTAG
Found at i:6756580 original size:35 final size:35
Alignment explanation
Indices: 6756506--6756590 Score: 82
Period size: 35 Copynumber: 2.4 Consensus size: 35
6756496 TACATCATCG
* * **
6756506 TTAAAAAATAAGACAAATATCACATTAATAATTTTA
1 TTAAAAAATAA-AAAAATATCAAATTAATAATTAAA
*
6756542 TTAAAAAATAAAAAAATATTAAATTAA-AACTTAAA
1 TTAAAAAATAAAAAAATATCAAATTAATAA-TTAAA
* *
6756577 TTAAATATTAAAAA
1 TTAAAAAATAAAAA
6756591 TAATTTTTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
34 2 0.05
35 28 0.68
36 11 0.27
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (35 bp):
TTAAAAAATAAAAAAATATCAAATTAATAATTAAA
Found at i:6756587 original size:12 final size:12
Alignment explanation
Indices: 6756555--6756588 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
6756545 AAAAATAAAA
6756555 AAATATTAAATT
1 AAATATTAAATT
6756567 AAA-ACTTAAATT
1 AAATA-TTAAATT
6756579 AAATATTAAA
1 AAATATTAAA
6756589 AATAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.05
12 18 0.90
13 1 0.05
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
AAATATTAAATT
Found at i:6760032 original size:23 final size:21
Alignment explanation
Indices: 6759987--6760041 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 21
6759977 TTAAGGTGTC
*
6759987 AAATATTTTTTATTTATTTTT
1 AAATATTTTTTATTAATTTTT
6760008 AAATATTTTTATATTAAATTTTT
1 AAATATTTTT-TATT-AATTTTT
*
6760031 AAAGATTTTTT
1 AAATATTTTTT
6760042 TAAAGATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 10 0.33
22 5 0.17
23 15 0.50
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
AAATATTTTTTATTAATTTTT
Found at i:6760041 original size:12 final size:12
Alignment explanation
Indices: 6760026--6760052 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6760016 TTATATTAAA
6760026 TTTTTAAAGATT
1 TTTTTAAAGATT
6760038 TTTTTAAAGATT
1 TTTTTAAAGATT
6760050 TTT
1 TTT
6760053 GAAATGTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
TTTTTAAAGATT
Found at i:6763812 original size:30 final size:30
Alignment explanation
Indices: 6763776--6763833 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
6763766 AGAGTCGAGG
**
6763776 GTTACCTATGTCCTTCGGGACATATGGACA
1 GTTACCTATGTCCTTCGAAACATATGGACA
*
6763806 GTTACCTATGTTCTTCGAAACATATGGA
1 GTTACCTATGTCCTTCGAAACATATGGA
6763834 TAGTGGTCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (30 bp):
GTTACCTATGTCCTTCGAAACATATGGACA
Found at i:6766567 original size:11 final size:11
Alignment explanation
Indices: 6766542--6766589 Score: 53
Period size: 12 Copynumber: 4.2 Consensus size: 11
6766532 TTGCAATTCC
6766542 TTTATCTT-TT
1 TTTATCTTGTT
6766552 CTTTATCTTGTT
1 -TTTATCTTGTT
*
6766564 TTTAATCTTATT
1 TTT-ATCTTGTT
6766576 TCTTATCTTGTT
1 T-TTATCTTGTT
6766588 TT
1 TT
6766590 CAGCACCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 12 0.38
12 18 0.56
13 2 0.06
ACGTcount: A:0.12, C:0.12, G:0.04, T:0.71
Consensus pattern (11 bp):
TTTATCTTGTT
Found at i:6772951 original size:23 final size:22
Alignment explanation
Indices: 6772925--6772988 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
6772915 CAGCTCATAT
6772925 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGTAG
* * *
6772948 AATTACACCGGAGTGCCGCGTAG
1 AATTGCACC-TAGTGCCACGTAG
6772971 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
6772989 TATAATAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGTAG
Found at i:6773129 original size:103 final size:103
Alignment explanation
Indices: 6773004--6773530 Score: 982
Period size: 103 Copynumber: 5.1 Consensus size: 103
6772994 TAATGTCCAT
6773004 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
6773069 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
*
6773107 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
6773172 GACATCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
*
6773210 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTTTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
* *
6773275 GACCTCACACAAGTTCCAAAGAATACATATATATCCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
*
6773313 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
6773378 GACCTCACACATGTTCCAAAGAATACATATATGTTCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
6773416 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
6773481 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
6773519 AAGGACCACATA
1 AAGGACCACATA
6773531 GACCCTCTAC
Statistics
Matches: 409, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 409 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.25
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:6774039 original size:20 final size:20
Alignment explanation
Indices: 6774014--6774054 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
6774004 TTTTTTATTA
*
6774014 TGGGGGAATCGGTTCCCCTC
1 TGGGGGAATCGATTCCCCTC
* *
6774034 TGGGGGTATTGATTCCCCTC
1 TGGGGGAATCGATTCCCCTC
6774054 T
1 T
6774055 AGCGTTCTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.27, G:0.32, T:0.32
Consensus pattern (20 bp):
TGGGGGAATCGATTCCCCTC
Found at i:6774103 original size:21 final size:21
Alignment explanation
Indices: 6774079--6774121 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
6774069 TCATATTCGT
*
6774079 TTGAGGGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
*
6774100 TTGAATGGGTATCGATTCCCC
1 TTGAAGGGGTATCGATTCCCC
6774121 T
1 T
6774122 AGCCCAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.23, G:0.28, T:0.33
Consensus pattern (21 bp):
TTGAAGGGGTATCGATTCCCC
Found at i:6776852 original size:12 final size:12
Alignment explanation
Indices: 6776835--6776859 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6776825 GTTCTTAAGA
6776835 GAAGATAATGAG
1 GAAGATAATGAG
6776847 GAAGATAATGAG
1 GAAGATAATGAG
6776859 G
1 G
6776860 GTGACGGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (12 bp):
GAAGATAATGAG
Found at i:6777853 original size:19 final size:19
Alignment explanation
Indices: 6777829--6777872 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
6777819 TAGATCGTGA
6777829 AACGAATTATCATATTACC
1 AACGAATTATCATATTACC
*
6777848 AACGAATTATCATATTATC
1 AACGAATTATCATATTACC
6777867 AACGAA
1 AACGAA
6777873 GTTGGTTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (19 bp):
AACGAATTATCATATTACC
Found at i:6781853 original size:2 final size:2
Alignment explanation
Indices: 6781846--6781873 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6781836 ATCATACCAT
6781846 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6781874 ATAACCTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6795952 original size:18 final size:18
Alignment explanation
Indices: 6795929--6795989 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
6795919 CAGTAATCCT
6795929 ATTCCCTAGTAATCTTTC
1 ATTCCCTAGTAATCTTTC
6795947 ATTCCCTAGTAATC-TTC
1 ATTCCCTAGTAATCTTTC
* *
6795964 TATTCCCACTGGTAATCTTAC
1 -ATT-CC-CTAGTAATCTTTC
6795985 ATTCC
1 ATTCC
6795990 GTGAACCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
17 3 0.08
18 17 0.46
19 4 0.11
20 11 0.30
21 2 0.05
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.41
Consensus pattern (18 bp):
ATTCCCTAGTAATCTTTC
Found at i:6795988 original size:20 final size:18
Alignment explanation
Indices: 6795920--6795989 Score: 65
Period size: 18 Copynumber: 3.8 Consensus size: 18
6795910 CAACATTCTC
*
6795920 AGTAATCCT-ATT-CCCT
1 AGTAATCTTCATTCCCCT
6795936 AGTAATCTTTCATT-CCCT
1 AGTAATC-TTCATTCCCCT
6795954 AGTAATCTTCTATTCCCACT
1 AGTAATCTTC-ATTCCC-CT
*
6795974 GGTAATCTTACATTCC
1 AGTAATCTT-CATTCC
6795990 GTGAACCAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.15
17 4 0.09
18 17 0.37
19 2 0.04
20 15 0.33
21 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.07, T:0.40
Consensus pattern (18 bp):
AGTAATCTTCATTCCCCT
Found at i:6796549 original size:19 final size:19
Alignment explanation
Indices: 6796525--6796563 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
6796515 AAGCATAAGA
*
6796525 AAACACCAGCTCGTGAAGT
1 AAACACCAGCTAGTGAAGT
6796544 AAACACCAGCTAGTGAAGT
1 AAACACCAGCTAGTGAAGT
6796563 A
1 A
6796564 CAAATTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.23, G:0.21, T:0.15
Consensus pattern (19 bp):
AAACACCAGCTAGTGAAGT
Found at i:6802062 original size:21 final size:21
Alignment explanation
Indices: 6802020--6802062 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
6802010 TTTCTGGGCT
*
6802020 AGGGGAATCGATACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
6802041 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
6802062 A
1 A
6802063 ACGAATATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.23, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:6802114 original size:20 final size:20
Alignment explanation
Indices: 6802089--6802127 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6802079 AGAACGCTAA
*
6802089 GGGGGAATCGATACCCCCAG
1 GGGGGAACCGATACCCCCAG
*
6802109 GGGGGAACCGATTCCCCCA
1 GGGGGAACCGATACCCCCA
6802128 TAATAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.10
Consensus pattern (20 bp):
GGGGGAACCGATACCCCCAG
Found at i:6802935 original size:103 final size:103
Alignment explanation
Indices: 6802607--6802924 Score: 591
Period size: 103 Copynumber: 3.1 Consensus size: 103
6802597 GTAGAGGGTC
*
6802607 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
6802672 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATAA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
6802710 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
6802775 TTGATCCTTGGTATATGTATATAATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
6802813 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTAGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
6802878 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
6802916 TATGTGGTC
1 TATGTGGTC
6802925 TTTATGGACA
Statistics
Matches: 209, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 209 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:6802977 original size:23 final size:23
Alignment explanation
Indices: 6802951--6802994 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
6802941 TATGGCACTA
6802951 CGGTGCAATTCTACGCGGCACCC
1 CGGTGCAATTCTACGCGGCACCC
*
6802974 CGGTGCAATTCTACGTGGCAC
1 CGGTGCAATTCTACGCGGCAC
6802995 TTAGGTGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.18, C:0.34, G:0.27, T:0.20
Consensus pattern (23 bp):
CGGTGCAATTCTACGCGGCACCC
Found at i:6803001 original size:23 final size:22
Alignment explanation
Indices: 6802943--6803006 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
6802933 CATTATTATA
6802943 TGGCACTACGGTGCAATTCTACG
1 TGGCACTA-GGTGCAATTCTACG
* **
6802966 CGGCACCCCGGTGCAATTCTACG
1 TGGCA-CTAGGTGCAATTCTACG
6802989 TGGCACTTAGGTGCAATT
1 TGGCAC-TAGGTGCAATT
6803007 ATATGAGCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.03
23 31 0.94
24 1 0.03
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (22 bp):
TGGCACTAGGTGCAATTCTACG
Found at i:6809093 original size:21 final size:21
Alignment explanation
Indices: 6809051--6809093 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
6809041 TTTATAGGCT
*
6809051 AGGGGAATCGATACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
6809072 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
6809093 A
1 A
6809094 ACGAATATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.23, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:6809145 original size:20 final size:20
Alignment explanation
Indices: 6809120--6809158 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6809110 AGAACGCTAA
*
6809120 GGGGGAATCGATACCCCCAG
1 GGGGGAACCGATACCCCCAG
*
6809140 GGGGGAACCGATTCCCCCA
1 GGGGGAACCGATACCCCCA
6809159 TAATAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.10
Consensus pattern (20 bp):
GGGGGAACCGATACCCCCAG
Found at i:6809819 original size:103 final size:103
Alignment explanation
Indices: 6809640--6809960 Score: 597
Period size: 103 Copynumber: 3.1 Consensus size: 103
6809630 GTAGAGGGTC
* *
6809640 TATGTGGTCCTTCAGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
6809705 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
6809743 TATGTAGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
6809808 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
6809846 TATGTGGTCTTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
6809911 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
6809949 TATGTGGTCCTT
1 TATGTGGTCCTT
6809961 ATGGACATTA
Statistics
Matches: 211, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 211 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:6810034 original size:23 final size:23
Alignment explanation
Indices: 6809985--6810039 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
6809975 ATGGCAATAC
*
6809985 GGTGCAATTCTACGCGACACCCC
1 GGTGCAATTCTACGCGACACCCA
* * **
6810008 GGTGCAATTCTACGTGGCACTTA
1 GGTGCAATTCTACGCGACACCCA
6810031 GGTGCAATT
1 GGTGCAATT
6810040 ATATGAGCTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.25
Consensus pattern (23 bp):
GGTGCAATTCTACGCGACACCCA
Found at i:6810700 original size:127 final size:127
Alignment explanation
Indices: 6810474--6810729 Score: 503
Period size: 127 Copynumber: 2.0 Consensus size: 127
6810464 CTCTGAATAT
6810474 TTTGGTAAACTTATATTACCATATGTATATTATTGTATTTTTCGTAATATAAGTTCAAGTATTTT
1 TTTGGTAAACTTATATTACCATATGTATATTATTGTATTTTTCGTAATATAAGTTCAAGTATTTT
*
6810539 ACTATTATTTTTAATGAGTTGTGTTTTAAAAGTCAATGTAATATCTCTGACTCGTATCCGGG
66 ACTATTATTTGTAATGAGTTGTGTTTTAAAAGTCAATGTAATATCTCTGACTCGTATCCGGG
6810601 TTTGGTAAACTTATATTACCATATGTATATTATTGTATTTTTCGTAATATAAGTTCAAGTATTTT
1 TTTGGTAAACTTATATTACCATATGTATATTATTGTATTTTTCGTAATATAAGTTCAAGTATTTT
6810666 ACTATTATTTGTAATGAGTTGTGTTTTAAAAGTCAATGTAATATCTCTGACTCGTATCCGGG
66 ACTATTATTTGTAATGAGTTGTGTTTTAAAAGTCAATGTAATATCTCTGACTCGTATCCGGG
6810728 TT
1 TT
6810730 GGGATACGGG
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.46
Consensus pattern (127 bp):
TTTGGTAAACTTATATTACCATATGTATATTATTGTATTTTTCGTAATATAAGTTCAAGTATTTT
ACTATTATTTGTAATGAGTTGTGTTTTAAAAGTCAATGTAATATCTCTGACTCGTATCCGGG
Found at i:6811578 original size:109 final size:109
Alignment explanation
Indices: 6811387--6811608 Score: 327
Period size: 109 Copynumber: 2.0 Consensus size: 109
6811377 ATGATCAAGC
** *
6811387 AAACAAGAAGCCCATGGTTGCAGCATCTGATATGAAGGCAAAAGATTAAGAGCAAAAGGGAACTA
1 AAACAAGAAGCCCATGGTTGCAGCATCCAATATGAAGGCAAAAGATTAAGAACAAAAGGGAACTA
* *
6811452 TGCGATAAAAGAGATCCCTAAGTAATCACATTTCTTAAACAAAT
66 TGCGATAAAAGAGATCCCTAAGCAATCACATTTCTTAAACAAAA
* * * *
6811496 AAACAAGAAGCTCATGGTTGCAGCATCCAATATGAAGGCAAAATATTAGGAACAAAAGGGAAGTA
1 AAACAAGAAGCCCATGGTTGCAGCATCCAATATGAAGGCAAAAGATTAAGAACAAAAGGGAACTA
* * * *
6811561 TGTGATAAAATAGATCCCTAGGCAATCACATTTCTTAAGCAAAA
66 TGCGATAAAAGAGATCCCTAAGCAATCACATTTCTTAAACAAAA
6811605 AAAC
1 AAAC
6811609 TTTGAAAATG
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
109 100 1.00
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.20
Consensus pattern (109 bp):
AAACAAGAAGCCCATGGTTGCAGCATCCAATATGAAGGCAAAAGATTAAGAACAAAAGGGAACTA
TGCGATAAAAGAGATCCCTAAGCAATCACATTTCTTAAACAAAA
Found at i:6814248 original size:60 final size:60
Alignment explanation
Indices: 6814170--6814289 Score: 138
Period size: 60 Copynumber: 2.0 Consensus size: 60
6814160 TAAAATACAC
* * * * *
6814170 AAATGGTCCCTCAATTATAGGATGA-TATTTTATTGAATTCA-TTGACTATTAAAATTTATA
1 AAATAGTCCCTCAATTATAGG-TCATTACTTTATTG-AGTCATTTGACTATTAAAAGTTATA
*
6814230 AAATAGTCCCT-AAGTTATAGGTCATTACTTTGTTGAGTCATTTGACTATTAAAAGTTATA
1 AAATAGTCCCTCAA-TTATAGGTCATTACTTTATTGAGTCATTTGACTATTAAAAGTTATA
6814290 GAATGATCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
59 8 0.16
60 43 0.84
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (60 bp):
AAATAGTCCCTCAATTATAGGTCATTACTTTATTGAGTCATTTGACTATTAAAAGTTATA
Found at i:6817329 original size:229 final size:227
Alignment explanation
Indices: 6816924--6817372 Score: 790
Period size: 229 Copynumber: 2.0 Consensus size: 227
6816914 GTAAATTATC
* * *
6816924 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
**
6816989 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
6817054 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
6817119 AAACATAAATTACATAACTTTCAAAAAAGTATA
196 AAACATAAATTACATAACTTT-AAAAAAGTATA
* *
6817152 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTATTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACT-GTGAAAACATATTTATTATTATATTTAG
*
6817217 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATT
* *
6817282 TTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATT
130 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
6817347 GAAACATAAATTACATAACTTTAAAA
195 GAAACATAAATTACATAACTTTAAAA
6817373 GCAGTTATAA
Statistics
Matches: 210, Mismatches: 10, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
228 39 0.19
229 171 0.81
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.39
Consensus pattern (227 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTAAAAAAGTATA
Found at i:6817626 original size:20 final size:19
Alignment explanation
Indices: 6817603--6817649 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
6817593 CGATATAACA
6817603 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
6817623 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
6817643 GGTAAAA
1 GGTAAAA
6817650 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:6817651 original size:17 final size:19
Alignment explanation
Indices: 6817612--6817654 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
6817602 AGGTAAAAAT
6817612 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
6817632 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
6817649 ATGATA
1 ATGATA
6817655 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:6819929 original size:21 final size:21
Alignment explanation
Indices: 6819882--6819946 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
6819872 AAGACAATCA
* *
6819882 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
6819904 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
6819924 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
6819945 AG
1 AG
6819947 GCATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:6820021 original size:33 final size:33
Alignment explanation
Indices: 6819979--6820044 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
6819969 AAATAGATGG
*
6819979 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
6820012 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
6820045 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:6821858 original size:19 final size:19
Alignment explanation
Indices: 6821834--6821882 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
6821824 AATGTAGGGT
6821834 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
6821853 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
6821872 T-ATTTTCGTAT
1 TAATTTT-GTAT
6821883 GTGAATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 5 0.18
19 23 0.82
ACGTcount: A:0.31, C:0.04, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:6822398 original size:197 final size:197
Alignment explanation
Indices: 6822007--6823281 Score: 2333
Period size: 197 Copynumber: 6.5 Consensus size: 197
6821997 GGCCAAAAGG
*
6822007 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGATTTTATGTGAGAATATGTCTAAATAATG
1 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
*
6822072 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGTGCACC
66 TGTCGACACTAATATAGTTTGTGTCGATA-TTTATTTCCAGAATGAATGGAAAACAGGGTGCACC
6822137 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
130 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
6822202 AAT
195 AAT
6822205 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
1 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
6822270 TGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATGGAAAACAGGGTGCACCA
66 TGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATGGAAAACAGGGTGCACCA
6822335 TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTA
131 TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTA
6822400 AT
196 AT
6822402 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
1 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
6822467 TGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATGGAAAACAGGGTGCACCA
66 TGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATGGAAAACAGGGTGCACCA
*
6822532 TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAATTATAATGTA
131 TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTA
6822597 AT
196 AT
*
6822599 ATGTAATTTTTCAATCTAACCGGTACAATTATATCGGTTTTATGTGAGAATATGTCTAAATAATG
1 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
*
6822664 TGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATGAAAAACAGGGTGCACCA
66 TGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATGGAAAACAGGGTGCACCA
*
6822729 TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAATTATAATGTA
131 TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTA
6822794 AT
196 AT
* *
6822796 ATGTAATTTTTCAATCTAACTGGTACAATTATACCGGTTTTATGTGAGAATATGACTAAATAATG
1 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
* * * *
6822861 TGTCGACACTAATATAGTTTGTGTCGATACTAATTT--AAATATGAATGGAAAACATGGTGCACC
66 TGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGA-ATGAATGGAAAACAGGGTGCACC
*
6822924 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAACATCATCGAACCCAAAAGTATAATGT
130 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
6822989 AAT
195 AAT
*
6822992 ATGTAATTTTTCAATCTAATCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
1 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
* * *
6823057 TGTCGACACTAATATAGTTTGTGTCGATACTAATTT--AAATATGAATGGAAAACAGGGTGCACC
66 TGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGA-ATGAATGGAAAACAGGGTGCACC
*
6823120 ATAAAGTGTCGATCCGTATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
130 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
6823185 AAT
195 AAT
6823188 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
1 ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
6823253 TGTCGACACTAATATAGTTTGTGTCGATA
66 TGTCGACACTAATATAGTTTGTGTCGATA
6823282 CTAATTTAAA
Statistics
Matches: 1054, Mismatches: 22, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
195 2 0.00
196 370 0.35
197 589 0.56
198 93 0.09
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (197 bp):
ATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGTGAGAATATGTCTAAATAATG
TGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATGGAAAACAGGGTGCACCA
TAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTA
AT
Found at i:6824773 original size:24 final size:25
Alignment explanation
Indices: 6824745--6824818 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 25
6824735 GGTCGCAGAA
6824745 GATGAATCA-GACGATGAAGATGAC
1 GATGAATCATGACGATGAAGATGAC
* * *
6824769 GATG-ATGATGACGATGAAGCTGGC
1 GATGAATCATGACGATGAAGATGAC
* *
6824793 GATGAAGATGATGACGATGATGATGA
1 GATG-A-ATCATGACGATGAAGATGA
6824819 TGAAGATGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
23 3 0.08
24 21 0.52
27 16 0.40
ACGTcount: A:0.36, C:0.09, G:0.34, T:0.20
Consensus pattern (25 bp):
GATGAATCATGACGATGAAGATGAC
Found at i:6824777 original size:3 final size:3
Alignment explanation
Indices: 6824757--6824831 Score: 60
Period size: 3 Copynumber: 25.0 Consensus size: 3
6824747 TGAATCAGAC
* * * * * ** *
6824757 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
6824805 GAC GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
6824832 CCAAACAAGT
Statistics
Matches: 53, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.36, C:0.07, G:0.35, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:6824831 original size:12 final size:12
Alignment explanation
Indices: 6824754--6824827 Score: 85
Period size: 12 Copynumber: 6.2 Consensus size: 12
6824744 AGATGAATCA
6824754 GACGATGAAGAT
1 GACGATGAAGAT
*
6824766 GACGATGATGAT
1 GACGATGAAGAT
*
6824778 GACGATGAAGCT
1 GACGATGAAGAT
*
6824790 GGCGATGAAGAT
1 GACGATGAAGAT
* * *
6824802 GATGACGATGAT
1 GACGATGAAGAT
*
6824814 GATGATGAAGAT
1 GACGATGAAGAT
6824826 GA
1 GA
6824828 TGATCCAAAC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 51 1.00
ACGTcount: A:0.36, C:0.08, G:0.35, T:0.20
Consensus pattern (12 bp):
GACGATGAAGAT
Found at i:6825805 original size:21 final size:22
Alignment explanation
Indices: 6825761--6825805 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
6825751 ATTACATATC
* *
6825761 TTTAAAAAAAGTATCGATCCTT
1 TTTAAAAAAAGTATCGAACATT
*
6825783 TTTATAAAAAGTAT-GAACATT
1 TTTAAAAAAAGTATCGAACATT
6825804 TT
1 TT
6825806 CAACATATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (22 bp):
TTTAAAAAAAGTATCGAACATT
Found at i:6826120 original size:183 final size:183
Alignment explanation
Indices: 6825812--6826621 Score: 1476
Period size: 183 Copynumber: 4.4 Consensus size: 183
6825802 TTTTCAACAT
** * * * * * *
6825812 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATA
6825877 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
6825942 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
6825995 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATA
6826060 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
6826125 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
6826178 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATA
6826243 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
**
6826308 AATGTGTCGATACGATTTAAAAAAGTGGAGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
*
6826361 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGATTGTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATA
6826426 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
6826491 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
* * * *
6826544 ATTATAATGTAATAGATAATTTTATAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATA
*
6826609 TGTCTACAACCTA
66 GGTCTACAACCTA
6826622 AAATGTGTCG
Statistics
Matches: 608, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 608 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (183 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
Found at i:6829162 original size:28 final size:23
Alignment explanation
Indices: 6829106--6829159 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
6829096 TAACTACAAG
*
6829106 TATATAATGTAATAGGTATCGTT
1 TATATAATGTAATAGGTAGCGTT
*
6829129 TATATAATGTAATAGGTAGCGCT
1 TATATAATGTAATAGGTAGCGTT
6829152 TATATAAT
1 TATATAAT
6829160 ATATTGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.41
Consensus pattern (23 bp):
TATATAATGTAATAGGTAGCGTT
Found at i:6829612 original size:18 final size:18
Alignment explanation
Indices: 6829591--6829627 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6829581 GTAATTGGAG
6829591 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
6829609 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
6829627 T
1 T
6829628 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:6829635 original size:24 final size:24
Alignment explanation
Indices: 6829583--6829629 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
6829573 TTTCATATGT
* *
6829583 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
6829607 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
6829630 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:6829927 original size:39 final size:39
Alignment explanation
Indices: 6829884--6829970 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
6829874 TCCGATGCTC
*
6829884 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
* *
6829923 ATCAAAATTCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
6829962 ATCAAAATC
1 ATCAAAATC
6829971 TACAACTTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:6830421 original size:23 final size:23
Alignment explanation
Indices: 6830390--6830462 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
6830380 ATAGGTAAAA
*
6830390 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6830413 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6830436 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6830459 ATAT
1 ATAT
6830463 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6830855 original size:23 final size:23
Alignment explanation
Indices: 6830824--6830896 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
6830814 ATAGGTAAAA
*
6830824 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6830847 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
6830870 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
6830893 ATAT
1 ATAT
6830897 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6830986 original size:434 final size:432
Alignment explanation
Indices: 6830179--6831245 Score: 2014
Period size: 434 Copynumber: 2.5 Consensus size: 432
6830169 TTATCTTTGG
*
6830179 TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTT
1 TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTT
6830244 TTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
66 TTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
* *
6830309 GAAACATAAATTACGTAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAGGTATGGACACTTTC
131 GAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTC
6830374 AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA
196 AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA
*
6830439 TAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTT
261 TAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATACTTTT
6830504 TTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATTTTAATTTAGTAA
326 TTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATTTTAATTTAGTAA
6830569 TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
391 TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
6830611 TTTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTT
1 -TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTT
6830676 TTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA
65 TTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAA
*
6830741 TTGAAACATAAATTACATAACTTTAAAATAAGTATCGATCCTTTTTATAAAAAGTATGGACACTT
129 TTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTT
6830806 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
194 TCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
6830871 TATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATACTT
259 TATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATACTT
*
6830936 TTTTCACTGTTGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATTTTAATTTAGT
324 TTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATTTTAATTTAGT
6831001 AATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
389 AATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
*
6831045 TT-A--TTATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTT
1 TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTT
* *
6831107 TTGTGCAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATTCAAAAAATT
66 TTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
6831172 GAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTC
131 GAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTC
6831237 AATATAATA
196 AATATAATA
6831246 TAATGTAATA
Statistics
Matches: 623, Mismatches: 10, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
429 81 0.13
430 113 0.18
432 1 0.00
433 122 0.20
434 306 0.49
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (432 bp):
TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTT
TTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
GAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTC
AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA
TAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATACTTTT
TTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATTTTAATTTAGTAA
TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
Found at i:6838346 original size:19 final size:20
Alignment explanation
Indices: 6838317--6838354 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
6838307 AGAAATTTGT
6838317 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
6838337 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
6838355 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:6838398 original size:63 final size:62
Alignment explanation
Indices: 6838322--6838480 Score: 185
Period size: 63 Copynumber: 2.5 Consensus size: 62
6838312 TTTGTTGAAG
* * *
6838322 GTGCATCGATGCATATGAAGTGCATCGATGCATTAAT-TTAAATACAAACATCGAATGTCGTCA
1 GTGCATCGATGCATA-GAAGTGCATCGATGCATTAATAATAAA-ACAAACATCGAATGCCCTCA
* * * ** **
6838385 GTGCATCGGTGCATAAGGAGTGTATCGATGCATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCAT-AGAAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
6838448 GTGCATCGATGCATCAGAAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGAAGTGCATCGATGCAT
6838481 GCCTCCATTA
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
63 75 0.94
64 5 0.06
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (62 bp):
GTGCATCGATGCATAGAAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
Found at i:6839252 original size:149 final size:150
Alignment explanation
Indices: 6838936--6839241 Score: 587
Period size: 149 Copynumber: 2.0 Consensus size: 150
6838926 GGGTAGAGGG
*
6838936 TCTACGCGGTCCTTCGGGATATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACAC
1 TCTACGCGGTCCTTCGGGA-ATATATATATATTATGTGGAACATGTGTGAAGTCTTGTAAGACAC
6839001 ATACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTAT
65 ATACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTAT
6839066 TATATGGCACTACGGTGCAAT
130 TATATGGCACTACGGTGCAAT
6839087 TCTACGCGGTCCTTCGGG-ATATATATATATTATGTGGAACATGTGTGAAGTCTTGTAAGACACA
1 TCTACGCGGTCCTTCGGGAATATATATATATTATGTGGAACATGTGTGAAGTCTTGTAAGACACA
6839151 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
6839216 ATATGGCACTACGGTGCAAT
131 ATATGGCACTACGGTGCAAT
6839236 TCTACG
1 TCTACG
6839242 TGGCACTTCG
Statistics
Matches: 154, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
149 136 0.88
151 18 0.12
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (150 bp):
TCTACGCGGTCCTTCGGGAATATATATATATTATGTGGAACATGTGTGAAGTCTTGTAAGACACA
TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATAATATGTGGTCCTTATGGACATTATT
ATATGGCACTACGGTGCAAT
Found at i:6839253 original size:23 final size:23
Alignment explanation
Indices: 6839219--6839264 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
6839209 CATTATTATA
*
6839219 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTATACG
*
6839242 TGGCACTTCGGTGCAATTATACG
1 TGGCACTACGGTGCAATTATACG
6839265 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATACG
Found at i:6841641 original size:23 final size:23
Alignment explanation
Indices: 6841611--6841661 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
6841601 AAAAATTCTT
6841611 AAACTTAACTCGATTGAAGCCTC
1 AAACTTAACTCGATTGAAGCCTC
6841634 AAACTTAACTCGATTGAAGCCTC
1 AAACTTAACTCGATTGAAGCCTC
6841657 AAACT
1 AAACT
6841662 CAAACATGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (23 bp):
AAACTTAACTCGATTGAAGCCTC
Found at i:6852565 original size:20 final size:21
Alignment explanation
Indices: 6852529--6852567 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6852519 ATTATTTTTA
*
6852529 TAATTTTTAAAAGTTTAATGC
1 TAATTTTGAAAAGTTTAATGC
6852550 TAATTTTGAAAA-TTTAAT
1 TAATTTTGAAAAGTTTAAT
6852568 ACTCTTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (21 bp):
TAATTTTGAAAAGTTTAATGC
Found at i:6874009 original size:18 final size:18
Alignment explanation
Indices: 6873988--6874047 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
6873978 TAATTTAGAG
6873988 TATACATCACAATTCTCA
1 TATACATCACAATTCTCA
* *
6874006 TATACAT--TAATT-TAGA
1 TATACATCACAATTCT-CA
6874022 GTATACATCACAATTCTCA
1 -TATACATCACAATTCTCA
6874041 TATACAT
1 TATACAT
6874048 TATGATGCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
15 1 0.03
16 5 0.15
17 7 0.21
18 14 0.42
19 5 0.15
20 1 0.03
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.37
Consensus pattern (18 bp):
TATACATCACAATTCTCA
Found at i:6874024 original size:35 final size:35
Alignment explanation
Indices: 6873978--6874049 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
6873968 AGTATATCAC
6873978 TAATTTAGAGTATACATCACAATTCTCATATACAT
1 TAATTTAGAGTATACATCACAATTCTCATATACAT
6874013 TAATTTAGAGTATACATCACAATTCTCATATACAT
1 TAATTTAGAGTATACATCACAATTCTCATATACAT
6874048 TA
1 TA
6874050 TGATGCTAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.38
Consensus pattern (35 bp):
TAATTTAGAGTATACATCACAATTCTCATATACAT
Found at i:6876786 original size:23 final size:23
Alignment explanation
Indices: 6876760--6876807 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
6876750 ATAAAGTACA
*
6876760 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
** *
6876783 ATAATGTAATAGGTAGTGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
6876806 AT
1 AT
6876808 TTACCTAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:6877259 original size:23 final size:23
Alignment explanation
Indices: 6877233--6877295 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
6877223 ATATAACCAC
6877233 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
6877256 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
6877279 TACCTATTACATCATAT
1 TACCTATTACATTATAT
6877296 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:6877692 original size:23 final size:23
Alignment explanation
Indices: 6877666--6877728 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
6877656 ATATAACCAC
6877666 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
6877689 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
6877712 TACCTATTACATCATAT
1 TACCTATTACATTATAT
6877729 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:6878126 original size:23 final size:23
Alignment explanation
Indices: 6878100--6878162 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
6878090 ATATAACCAC
6878100 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
6878123 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
6878146 TACCTATTACATCATAT
1 TACCTATTACATTATAT
6878163 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:6878213 original size:434 final size:434
Alignment explanation
Indices: 6876874--6878374 Score: 2870
Period size: 433 Copynumber: 3.5 Consensus size: 434
6876864 TATTACATTA
* *
6876874 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTATTTTAAAGTTATGTAAT
*
6876939 TTATGTTTCAA-TTTTTTGAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
6877003 ATTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 ATTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
*
6877068 A-TA-A-T-AATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAA
196 ACAACATTAAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAA
*
6877129 AATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCAACAGTGAAAAAAGTATGGAC
261 AATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGAC
6877194 ACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATAC
326 ACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATAC
6877259 CTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 CTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
6877303 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTATTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTATTTTAAAGTTATGTAAT
*
6877368 TTATGTTTCAATTTTTTTTAATAGTGTTTCGTGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
6877433 ATTTGCACAAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 ATTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
6877498 ACAACATTAAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAA
196 ACAACATTAAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAA
6877563 AATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGAC
261 AATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGAC
6877628 ACTTTTAT-AAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATAC
326 ACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATAC
6877692 CTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 CTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
6877736 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTATTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTATTTTAAAGTTATGTAAT
6877801 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
6877866 ATTTGCACAAAAAATTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 ATTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
6877931 ACAACATTAAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAA
196 ACAACATTAAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAA
6877996 AATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGAC
261 AATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGAC
6878061 ACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATAC
326 ACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATAC
6878126 CTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 CTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
6878170 TATTATATTGAAAGTGTCCATACCTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTATTTTAAAGTTATGTAAT
6878235 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
6878300 ATTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 ATTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
6878365 ACAACATTAA
196 ACAACATTAA
6878375 CCAAAGATAA
Statistics
Matches: 1055, Mismatches: 11, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
429 74 0.07
430 116 0.11
431 1 0.00
432 1 0.00
433 433 0.41
434 430 0.41
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.41
Consensus pattern (434 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTATTTTAAAGTTATGTAAT
TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
ATTTGCACAAAAAATTATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
ACAACATTAAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAA
AATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGAC
ACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATAC
CTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
Found at i:6878635 original size:39 final size:39
Alignment explanation
Indices: 6878581--6878666 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
6878571 CAAGTTGTAG
*
6878581 ATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* *
6878620 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
6878659 ATTTTGAT
1 ATTTTGAT
6878667 GAGCATCGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:6878950 original size:24 final size:25
Alignment explanation
Indices: 6878913--6878961 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
6878903 TAGTGGAGCC
6878913 GAAATATATAATTCAAACTCAAATT
1 GAAATATATAATTCAAACTCAAATT
* *
6878938 GAAATTTA-AATTCAAACTCCAATT
1 GAAATATATAATTCAAACTCAAATT
6878962 ACATATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.49, C:0.14, G:0.04, T:0.33
Consensus pattern (25 bp):
GAAATATATAATTCAAACTCAAATT
Found at i:6879408 original size:28 final size:26
Alignment explanation
Indices: 6879376--6879437 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 26
6879366 GATAGATACT
*
6879376 TTACAATATATTATATAAGCGCTACCTA
1 TTACAATATATTATA-AA-CGATACCTA
6879404 TTAC-AT-TA-TATAAACGATACCTA
1 TTACAATATATTATAAACGATACCTA
*
6879427 TTACATTATAT
1 TTACAATATAT
6879438 ACTTGTAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
23 12 0.41
24 3 0.10
25 6 0.21
26 2 0.07
27 2 0.07
28 4 0.14
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.39
Consensus pattern (26 bp):
TTACAATATATTATAAACGATACCTA
Found at i:6879415 original size:23 final size:23
Alignment explanation
Indices: 6879385--6879438 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
6879375 TTTACAATAT
* *
6879385 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAACGATACCTATTAC
6879408 ATTATATAAACGATACCTATTAC
1 ATTATATAAACGATACCTATTAC
6879431 ATTATATA
1 ATTATATA
6879439 CTTGTAGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.41, C:0.17, G:0.06, T:0.37
Consensus pattern (23 bp):
ATTATATAAACGATACCTATTAC
Found at i:6882231 original size:183 final size:183
Alignment explanation
Indices: 6881923--6882731 Score: 1485
Period size: 183 Copynumber: 4.4 Consensus size: 183
6881913 CGACACATTT
* * * *
6881923 TAGGTTGTAGACATATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
*
6881988 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACATTTTTTTAAATCGTATCGACACAT
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
6882053 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
6882106 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
6882171 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
6882236 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
6882289 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
6882354 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACA-
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
6882418 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
*
6882471 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATAT
1 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
6882536 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
*
6882601 TTTTCTTCCAATATGGACATAAAGTACCGACACAGTATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
* * * * *
6882654 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAATTTACCT
1 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
**
6882719 ATTTTATTATAAT
66 ATTACATTATAAT
6882732 ATGTTGAAAG
Statistics
Matches: 610, Mismatches: 15, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
182 181 0.30
183 429 0.70
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (183 bp):
TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
Found at i:6882594 original size:365 final size:366
Alignment explanation
Indices: 6881923--6882731 Score: 1512
Period size: 365 Copynumber: 2.2 Consensus size: 366
6881913 CGACACATTT
*
6881923 TAGGTTGTAGACATATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCT
*
6881988 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACATTTTTTTAAATCGTATCGACACAT
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
6882053 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
*
6882118 CTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCTATTACATTATAA
196 CTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATATATTACATTATAA
6882183 TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
261 TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
6882248 ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
326 ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
* * *
6882289 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCT
6882354 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACA-
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
6882418 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
131 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
6882483 CTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATATATTACATTATAA
196 CTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATATATTACATTATAA
6882548 TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
261 TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
*
6882613 ATGGACATAAAGTACCGACACAGTATTAAAAAGTGTCGATA
326 ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
* *
6882654 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAATTTACCT
1 TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCT
**
6882719 ATTTTATTATAAT
66 ATTACATTATAAT
6882732 ATGTTGAAAG
Statistics
Matches: 429, Mismatches: 14, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
365 305 0.71
366 124 0.29
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (366 bp):
TAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCT
ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGAC
CTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATATATTACATTATAA
TTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAAT
ATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATA
Found at i:6884207 original size:3 final size:3
Alignment explanation
Indices: 6884199--6884273 Score: 60
Period size: 3 Copynumber: 25.0 Consensus size: 3
6884189 ACTTGTTTGG
* * * ** * *
6884199 ATC ATC ATC TTC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC AGC TTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * *
6884247 ATC GTC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC
6884274 GTCAGCTTCA
Statistics
Matches: 53, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.23, C:0.35, G:0.07, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:6884216 original size:12 final size:12
Alignment explanation
Indices: 6884203--6884285 Score: 94
Period size: 12 Copynumber: 6.9 Consensus size: 12
6884193 GTTTGGATCA
*
6884203 TCATCTTCATCA
1 TCATCTTCATCG
* * *
6884215 TCATCATCGTCA
1 TCATCTTCATCG
6884227 TCATCTTCATCG
1 TCATCTTCATCG
* *
6884239 CCAGCTTCATCG
1 TCATCTTCATCG
*
6884251 TCATCATCATCG
1 TCATCTTCATCG
6884263 TCATCTTCATCG
1 TCATCTTCATCG
*
6884275 TCAGCTTCATC
1 TCATCTTCATC
6884286 TTCTGCGACC
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 59 1.00
ACGTcount: A:0.20, C:0.35, G:0.08, T:0.36
Consensus pattern (12 bp):
TCATCTTCATCG
Found at i:6884247 original size:36 final size:36
Alignment explanation
Indices: 6884207--6884285 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
6884197 GGATCATCAT
*
6884207 CTTCATCATCATCATCGTCATCATCTTCATCGCCAG
1 CTTCATCATCATCATCATCATCATCTTCATCGCCAG
* * *
6884243 CTTCATCGTCATCATCATCGTCATCTTCATCGTCAG
1 CTTCATCATCATCATCATCATCATCTTCATCGCCAG
6884279 CTTCATC
1 CTTCATC
6884286 TTCTGCGACC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.20, C:0.35, G:0.09, T:0.35
Consensus pattern (36 bp):
CTTCATCATCATCATCATCATCATCTTCATCGCCAG
Found at i:6884286 original size:18 final size:18
Alignment explanation
Indices: 6884227--6884288 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
6884217 ATCATCGTCA
*
6884227 TCATCTTCATCGCCAGCT
1 TCATCTTCATCGTCAGCT
* * * *
6884245 TCATCGTCATCATCATCG
1 TCATCTTCATCGTCAGCT
6884263 TCATCTTCATCGTCAGCT
1 TCATCTTCATCGTCAGCT
6884281 TCATCTTC
1 TCATCTTC
6884289 TGCGACCGCT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.18, C:0.35, G:0.10, T:0.37
Consensus pattern (18 bp):
TCATCTTCATCGTCAGCT
Found at i:6884288 original size:6 final size:6
Alignment explanation
Indices: 6884203--6884288 Score: 64
Period size: 6 Copynumber: 14.3 Consensus size: 6
6884193 GTTTGGATCA
* * * * * * * *
6884203 TCATCT TCATCA TCATCA TCGTCA TCATCT TCATCG CCAGCT TCATCG
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * *
6884251 TCATCA TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
6884289 TGCGACCGCT
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
6 62 1.00
ACGTcount: A:0.20, C:0.35, G:0.08, T:0.37
Consensus pattern (6 bp):
TCATCT
Done.