Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10075380
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 42
Found at i:7582879 original size:31 final size:31
Alignment explanation
Indices: 7582834--7582938 Score: 129
Period size: 31 Copynumber: 3.4 Consensus size: 31
7582824 TAAAACTTGT
* * *
7582834 AATACAGTCGCCCAACATTTAGTCCGTTTGC
1 AATATAGTCCCCCAACATTTAGTCTGTTTGC
* * * *
7582865 AATATAGTCTCCCAACATTTAGTTTATTTAC
1 AATATAGTCCCCCAACATTTAGTCTGTTTGC
*
7582896 AATATGGTCCCCCAACATTTAGTCTGTTTGC
1 AATATAGTCCCCCAACATTTAGTCTGTTTGC
*
7582927 AATATGGTCCCC
1 AATATAGTCCCC
7582939 GAAATAACTG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (31 bp):
AATATAGTCCCCCAACATTTAGTCTGTTTGC
Found at i:7584412 original size:14 final size:14
Alignment explanation
Indices: 7584395--7584421 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7584385 ATATTAAATA
7584395 ATAAATATAATTAT
1 ATAAATATAATTAT
7584409 ATAAATATAATTA
1 ATAAATATAATTA
7584422 AAAAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAAATATAATTAT
Found at i:7585297 original size:28 final size:27
Alignment explanation
Indices: 7585254--7585330 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
7585244 TGCGGTATTA
** * *
7585254 ATTTTTTAATTTTAAAATTACGCATTT
1 ATTTTTTAATGATAAAATTAAGCATAT
* **
7585281 ATCTTTTTAATGATAAATTTAAGTGTAT
1 AT-TTTTTAATGATAAAATTAAGCATAT
*
7585309 ATTTTTTAATGATATAATTAAG
1 ATTTTTTAATGATAAAATTAAG
7585331 TATTTAATTG
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (27 bp):
ATTTTTTAATGATAAAATTAAGCATAT
Found at i:7588856 original size:30 final size:31
Alignment explanation
Indices: 7588822--7588906 Score: 104
Period size: 30 Copynumber: 2.8 Consensus size: 31
7588812 TCCAAAATTT
*
7588822 AACTTTTAAAAATTTACATTTTAGTCCT-TA
1 AACTTTTAAAAATTTACATTTTAGTCCTCCA
* * *
7588852 AACTTTTACAACTTTACAATTTAGT-CTCCA
1 AACTTTTAAAAATTTACATTTTAGTCCTCCA
*
7588882 AAC-TTTCAAAATTTACATTTTAGTC
1 AACTTTTAAAAATTTACATTTTAGTC
7588907 ACTAGATAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
29 19 0.42
30 26 0.58
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.44
Consensus pattern (31 bp):
AACTTTTAAAAATTTACATTTTAGTCCTCCA
Found at i:7593935 original size:39 final size:39
Alignment explanation
Indices: 7593879--7593976 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 39
7593869 ACATGCTTGT
* * *
7593879 AATATAATTGAAC--AAAAAATTAATTAATAACCTTTAA
1 AATATAATTGAACAAAAAAAATCAACTAATAACCTGTAA
* * *
7593916 AATATAATTGAACAAAAAAAATCAACTGATGATCTGTAA
1 AATATAATTGAACAAAAAAAATCAACTAATAACCTGTAA
*
7593955 AATATAGTTGAACAAAACAAAA
1 AATATAATTGAACAAAA-AAAA
7593977 AATGTAAAGC
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
37 13 0.25
39 34 0.67
40 4 0.08
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.27
Consensus pattern (39 bp):
AATATAATTGAACAAAAAAAATCAACTAATAACCTGTAA
Found at i:7596453 original size:22 final size:22
Alignment explanation
Indices: 7596423--7596493 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 22
7596413 TATAATATTA
*
7596423 TATATATATATATATATTAACTT
1 TATAAATATATATATATTAA-TT
* *
7596446 TA-AAATATTTTTATATTAATT
1 TATAAATATATATATATTAATT
*
7596467 TATTAAATATATTTTATTATTAATT
1 TA-TAAATATA-TATA-TATTAATT
7596492 TA
1 TA
7596494 ATTTAAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 4 0.10
22 14 0.35
23 8 0.20
24 4 0.10
25 10 0.25
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (22 bp):
TATAAATATATATATATTAATT
Found at i:7596494 original size:22 final size:22
Alignment explanation
Indices: 7596435--7596492 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
7596425 TATATATATA
*
7596435 TATATTAACTTTAAAATATTTT
1 TATATTAATTTTAAAATATTTT
*
7596457 TATATTAATTTATTAAATATATTT
1 TATATTAATTT-TAAAATAT-TTT
7596481 TATTATTAATTT
1 TA-TATTAATTT
7596493 AATTTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 10 0.32
23 7 0.23
24 5 0.16
25 9 0.29
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TATATTAATTTTAAAATATTTT
Found at i:7596499 original size:27 final size:27
Alignment explanation
Indices: 7596439--7596533 Score: 99
Period size: 28 Copynumber: 3.6 Consensus size: 27
7596429 TATATATATA
7596439 TTAACTTT-AAAATATTTT-TATATTAAT
1 TTAA-TTTAAAAATATTTTAT-TATTAAT
*
7596466 TT-A-TTAAATATATTTTATTATTAAT
1 TTAATTTAAAAATATTTTATTATTAAT
* *
7596491 TTAATTTAAAAAATATTTTATTTTTATT
1 TTAATTT-AAAAATATTTTATTATTAAT
*
7596519 TTTATTTAAAAATAT
1 TTAATTTAAAAATAT
7596534 ATATTTTATG
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
24 2 0.03
25 18 0.31
26 3 0.05
27 12 0.21
28 23 0.40
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (27 bp):
TTAATTTAAAAATATTTTATTATTAAT
Found at i:7610028 original size:265 final size:248
Alignment explanation
Indices: 7609494--7610106 Score: 796
Period size: 265 Copynumber: 2.4 Consensus size: 248
7609484 ATTATTCATA
*
7609494 TATTGAATAAAAATATTTTTTT-TTATTTC---GGGTCGGGTTTCTAATTCATATATTCGGGTCG
1 TATTGAATAAAAATATTTTTTTATTATTTCGGTGGGTCGGATTTCTAATTCATATATTCGGGTCG
7609555 GGTCGGGTGAAACTTTATTTTGGTCGGGTCGGGTTTTTTAAGTGTAATATTCGGGTCGGGTTGAG
66 GGTC-GGTGAAACTTTATTTTGGTCGGGTCGGGTTTTTTAAGTGTAATATTCGGGTCGGGTTGA-
* * *
7609620 TTCGGGTTTAGGGTGAAAAATACCCGACCCGAAAATATATATAATTTTACTTTATATATTTAGGA
129 -TCAGGTTTAGGGTGAAAAATACCCGACCCGAAAATATATATAATTTTACCTTATATATTTAGAA
* *
7609685 ATAATTACAATAATACCCCTCTATATATAATTTTTTTTCAATTAAGTCATTGTTTT
193 ATAATTACAATAATACCACTCTATATATAATTTTTTTTCAATTAAGTCACTGTTTT
7609741 TATTGAATAAAAATATTTTTTTATTATTTCGGATTGGGTCGGATTTCTAATTCATATATTCGGGT
1 TATTGAATAAAAATATTTTTTTATTATTTCGG--TGGGTCGGATTTCTAATTCATATATTCGGGT
*
7609806 CGGGTCAGGTGAAACTTTATTTTGGTCGGGTCATGTCGGTTTTTTTTAAGTGTGATATTCGGGTC
64 CGGGTC-GGTGAAACTTTATTTTGGTCGGGTC--G--GG--TTTTTTAAGTGTAATATTCGGGTC
*
7609871 -GG-T-A-CAGGTTTAGGGTGAAAAATACACAATCCGACCCGACCCAAATA-ATATATTTTTACC
122 GGGTTGATCAGGTTTAGGGTGAAAAAT--AC---CCGACCCGA---AAATATATATAATTTTACC
*
7609931 TTATATATTTATAAATAATTACAATAATACCACTCTATATATATATATATATTTTTCCAATTAAG
179 TTATATATTTAGAAATAATTACAATAATACCACTCTATATATA-AT-T-T-TTTTT-CAATTAAG
7609996 TCACTGTTTT
239 TCACTGTTTT
7610006 TATTGAATAAAAATATTTTTTTATTATTTCGGGTAGGGTC-GAGTTTCTAATTCATATATTCGGG
1 TATTGAATAAAAATATTTTTTTATTATTTC-GGT-GGGTCGGA-TTTCTAATTCATATATTCGGG
* *
7610070 TCGGATCGAGTGAAACTTTATTTTGGTTGGGTCGGGT
63 TCGGGTCG-GTGAAACTTTATTTTGGTCGGGTCGGGT
7610107 CTCGGATGGA
Statistics
Matches: 325, Mismatches: 12, Indels: 46
0.85 0.03 0.12
Matches are distributed among these distances:
247 22 0.07
248 7 0.02
253 78 0.24
255 3 0.01
256 1 0.00
257 3 0.01
258 11 0.03
259 24 0.07
260 51 0.16
261 9 0.03
262 1 0.00
263 2 0.01
264 9 0.03
265 102 0.31
266 2 0.01
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.42
Consensus pattern (248 bp):
TATTGAATAAAAATATTTTTTTATTATTTCGGTGGGTCGGATTTCTAATTCATATATTCGGGTCG
GGTCGGTGAAACTTTATTTTGGTCGGGTCGGGTTTTTTAAGTGTAATATTCGGGTCGGGTTGATC
AGGTTTAGGGTGAAAAATACCCGACCCGAAAATATATATAATTTTACCTTATATATTTAGAAATA
ATTACAATAATACCACTCTATATATAATTTTTTTTCAATTAAGTCACTGTTTT
Found at i:7613265 original size:10 final size:10
Alignment explanation
Indices: 7613250--7613275 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7613240 TTAGTGTATC
7613250 AAAACTTATG
1 AAAACTTATG
7613260 AAAACTTATG
1 AAAACTTATG
7613270 AAAACT
1 AAAACT
7613276 ACTGATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.12, G:0.08, T:0.27
Consensus pattern (10 bp):
AAAACTTATG
Found at i:7616494 original size:36 final size:36
Alignment explanation
Indices: 7616448--7616518 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
7616438 GTCATTGTTG
7616448 ATAAACATTGAATTGTATTACCATTTCCTTTTATTT
1 ATAAACATTGAATTGTATTACCATTTCCTTTTATTT
*
7616484 ATAAACATTGAATTGTATTACCATTTCTTTTTATT
1 ATAAACATTGAATTGTATTACCATTTCCTTTTATT
7616519 CCTTTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.31, C:0.13, G:0.06, T:0.51
Consensus pattern (36 bp):
ATAAACATTGAATTGTATTACCATTTCCTTTTATTT
Found at i:7620026 original size:25 final size:23
Alignment explanation
Indices: 7619992--7620045 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
7619982 AAATATAATA
7619992 AATAATATTATTTATTATAAAAATT
1 AATAATATTATTT-TTA-AAAAATT
* *
7620017 AATATTATTATTTTTAAAATATT
1 AATAATATTATTTTTAAAAAATT
7620040 AA-AATA
1 AATAATA
7620046 ATTTATTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 3 0.12
23 8 0.31
24 3 0.12
25 12 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
AATAATATTATTTTTAAAAAATT
Found at i:7620034 original size:22 final size:23
Alignment explanation
Indices: 7619994--7620052 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
7619984 ATATAATAAA
7619994 TAATATTATTTATTATAAAA-AT
1 TAATATTATTTATTATAAAATAT
*
7620016 TAATATTA-TTATTTTTAAAATAT
1 TAATATTATTTA-TTATAAAATAT
* *
7620039 TAAAATAATTTATT
1 TAATATTATTTATT
7620053 CATTATTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 15 0.48
23 10 0.32
24 3 0.10
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TAATATTATTTATTATAAAATAT
Found at i:7620424 original size:32 final size:32
Alignment explanation
Indices: 7620397--7620456 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
7620387 AATATAACTG
*
7620397 AATATATTA-TTATAATATTAA-AAATATAAT
1 AATATATTAGTAATAATATTAATAAATATAAT
*
7620427 ATTATATTAGTAATAATATTAATAAATATA
1 AATATATTAGTAATAATATTAATAAATATA
7620457 TTTTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 8 0.31
31 11 0.42
32 7 0.27
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (32 bp):
AATATATTAGTAATAATATTAATAAATATAAT
Found at i:7622606 original size:23 final size:22
Alignment explanation
Indices: 7622580--7622637 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 22
7622570 TAAGCTACCA
7622580 AAAGACAGAGAAAAGCGTGCCAC
1 AAAGACAGAGAAAA-CGTGCCAC
*
7622603 AAAGACAGAGATAAACGTGCCAT
1 AAAGACAGAGA-AAACGTGCCAC
7622626 AAAGACAGAGAA
1 AAAGACAGAGAA
7622638 CATGTCACGA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
22 1 0.03
23 29 0.88
24 3 0.09
ACGTcount: A:0.52, C:0.17, G:0.24, T:0.07
Consensus pattern (22 bp):
AAAGACAGAGAAAACGTGCCAC
Found at i:7635664 original size:151 final size:151
Alignment explanation
Indices: 7635222--7635669 Score: 515
Period size: 153 Copynumber: 2.9 Consensus size: 151
7635212 CTCATTCTCT
* * * * * * *
7635222 TAATACATTACACTATTTTTGTATACTTTTTT-AAAAATAATGGGATGCACATATTCTCTCATGG
1 TAAT-CATTAAACTAATTTT-TATATTTTTTTCTAAAATAATGGGATGTACATATTCTCTTAGGG
* * * * *
7635286 GCTTAGTGCGTCCACCCTTGCTGTATGCATCAATCACAATTCTATAATAAACTTGCTAAATCTCC
64 GCTTAGTGCATCCACCCTTGTTGCATGCATCACTCACAATTCTATAGTAAACTTGCTAAATCTCC
* *
7635351 CTATCAACAACCCCTCTCGGCCGC
129 C-AACAACAACCCCTCTCGACCGC
* * *
7635375 TAATCATTAAACTAATTTTTATATGTTTTTTTCTAAAATAATGGAATGTAAATATTCT-TTAGAG
1 TAATCATTAAACTAATTTTTATA--TTTTTTTCTAAAATAATGGGATGTACATATTCTCTTAGGG
* * * * *
7635439 GCTCAGTGCATCCACCCTTGTTGCATGCATCACCCAGAGTTCTATAGTGAACTTGCTAAATCTCC
64 GCTTAGTGCATCCACCCTTGTTGCATGCATCACTCACAATTCTATAGTAAACTTGCTAAATCTCC
* *
7635504 CTACCAACAACCCCTCTCGACCGT
129 C-AACAACAACCCCTCTCGACCGC
* * * *
7635528 TAGTTATTAAACTGATTTTTATA-TTTTTTCTAAAATAATGGGATGTGCATATTCTCTTAGGGGC
1 TAATCATTAAACTAATTTTTATATTTTTTTCTAAAATAATGGGATGTACATATTCTCTTAGGGGC
* * * * *
7635592 TTAGTGCATCCACCCTCGTTGCATACATCACTCACAATTCGATCGTAAACTTGTTAAATCTCCCA
66 TTAGTGCATCCACCCTTGTTGCATGCATCACTCACAATTCTATAGTAAACTTGCTAAATCTCCCA
7635657 ACAAACAACCCCT
131 AC-AACAACCCCT
7635670 TTCAGCCACT
Statistics
Matches: 249, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
150 31 0.12
151 75 0.30
152 13 0.05
153 109 0.44
154 21 0.08
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (151 bp):
TAATCATTAAACTAATTTTTATATTTTTTTCTAAAATAATGGGATGTACATATTCTCTTAGGGGC
TTAGTGCATCCACCCTTGTTGCATGCATCACTCACAATTCTATAGTAAACTTGCTAAATCTCCCA
ACAACAACCCCTCTCGACCGC
Found at i:7636482 original size:6 final size:6
Alignment explanation
Indices: 7636471--7636500 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
7636461 TATGTTTAGT
7636471 TTATAA TTATAA TTATAA TTATAA TTATAA
1 TTATAA TTATAA TTATAA TTATAA TTATAA
7636501 GCGTTCATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTATAA
Found at i:7645262 original size:22 final size:20
Alignment explanation
Indices: 7645235--7645276 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
7645225 AGGTTGATTT
*
7645235 TTTTTATCTTTTAAAAATAATA
1 TTTTTAT-TATTAAAAA-AATA
7645257 TTTTTATTATTAAAAAAATA
1 TTTTTATTATTAAAAAAATA
7645277 AAAAGATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 8 0.42
22 7 0.37
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTTTATTATTAAAAAAATA
Found at i:7648340 original size:63 final size:62
Alignment explanation
Indices: 7648261--7648476 Score: 281
Period size: 64 Copynumber: 3.4 Consensus size: 62
7648251 AGTCTAATAT
* * * * *
7648261 CCTTCGCTGTGAAGTTGAAATTG-GCTCTGACATTGGGAAGTTGTTTGTTGACAGCCAGCGGCC
1 CCTTCGTTGTGAAGTTGAACTTGTGCTCTGACACTGGGAA-AT-TTTGTTGACAACCAGCGGCC
* * *
7648324 CCTTCGTTGTGAAGTTGAACTTGTGCTATCTTAAACTGGGAAATTTTGTTGACAACCAGTGGCC
1 CCTTCGTTGTGAAGTTGAACTTGTGC--TCTGACACTGGGAAATTTTGTTGACAACCAGCGGCC
* *
7648388 CCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGACACTGGCAAATTTTGTTGACAACCAGCGGCC
1 CCTTCGTTGTGAAGTTGAACTTGTG--CTCTGACACTGGGAAATTTTGTTGACAACCAGCGGCC
7648452 CCTTCGTTGTGAAGTTGAACTTGTG
1 CCTTCGTTGTGAAGTTGAACTTGTG
7648477 TTGTCTTGAG
Statistics
Matches: 135, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
63 21 0.16
64 102 0.76
65 1 0.01
66 11 0.08
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.33
Consensus pattern (62 bp):
CCTTCGTTGTGAAGTTGAACTTGTGCTCTGACACTGGGAAATTTTGTTGACAACCAGCGGCC
Found at i:7648345 original size:106 final size:105
Alignment explanation
Indices: 7648137--7648348 Score: 334
Period size: 105 Copynumber: 2.0 Consensus size: 105
7648127 TGCAAGTTGC
*
7648137 GTTGTTTCGAGGCCAATATCCTTCGCCGTGAAGTTGAAATTGACTCTGAAACTGGAAAGTGTTTG
1 GTTGTCTCGAGGCCAATATCCTTCGCCGTGAAGTTGAAATTGACTCTGAAACTGGAAAGTGTTTG
7648202 TTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGT
66 TTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGT
* * * * * * *
7648242 GTTGTCTCGAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGACATTGGGAAGTTGTTT
1 GTTGTCTCGAGGCCAATATCCTTCGCCGTGAAGTTGAAATTGACTCTGAAACTGGAAAG-TGTTT
*
7648307 GTTGACAGCCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGT
65 GTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGT
7648348 G
1 G
7648349 CTATCTTAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
105 51 0.53
106 46 0.47
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (105 bp):
GTTGTCTCGAGGCCAATATCCTTCGCCGTGAAGTTGAAATTGACTCTGAAACTGGAAAGTGTTTG
TTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGT
Found at i:7648477 original size:64 final size:64
Alignment explanation
Indices: 7648304--7648482 Score: 295
Period size: 64 Copynumber: 2.8 Consensus size: 64
7648294 TGGGAAGTTG
* * * * *
7648304 TTTGTTGACAGCCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGCTATCTTAAACTGGGAAAT
1 TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGCAAAT
* *
7648368 TTTGTTGACAACCAGTGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGACACTGGCAAAT
1 TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGCAAAT
7648432 TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
1 TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
7648483 TGAGTGGAAC
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 107 1.00
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.35
Consensus pattern (64 bp):
TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTGAAACTGGCAAAT
Found at i:7649597 original size:12 final size:12
Alignment explanation
Indices: 7649582--7649609 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7649572 TTTCTTTCAG
7649582 TTTTTTTGTTTT
1 TTTTTTTGTTTT
7649594 TTTTTTTGTTTT
1 TTTTTTTGTTTT
7649606 TTTT
1 TTTT
7649610 CATCTTTGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (12 bp):
TTTTTTTGTTTT
Found at i:7660565 original size:2 final size:2
Alignment explanation
Indices: 7660558--7660598 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
7660548 GTTAGGTTAC
7660558 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7660599 GAAATTAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7662013 original size:2 final size:2
Alignment explanation
Indices: 7662008--7662045 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7661998 ATATGTTTAT
7662008 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7662046 ACGAATGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7662740 original size:23 final size:22
Alignment explanation
Indices: 7662713--7662756 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7662703 ATTTAATGGT
* *
7662713 CAAATTGATATTTTATCTAAAA
1 CAAAATGATAATTTATCTAAAA
*
7662735 CAAAATGATAATTTATTTAAAA
1 CAAAATGATAATTTATCTAAAA
7662757 TTTAAGAGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (22 bp):
CAAAATGATAATTTATCTAAAA
Found at i:7667683 original size:16 final size:17
Alignment explanation
Indices: 7667662--7667693 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7667652 ATTGATATGA
7667662 AAAAAATAT-TAAATTG
1 AAAAAATATATAAATTG
7667678 AAAAAATATATAAATT
1 AAAAAATATATAAATT
7667694 AAGGTGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (17 bp):
AAAAAATATATAAATTG
Found at i:7667965 original size:19 final size:19
Alignment explanation
Indices: 7667925--7667964 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7667915 ATATTTTTAA
*
7667925 TTTATATTTTATCTCTTCT
1 TTTATATTTTATCTATTCT
*
7667944 TTTATTTTTTATCTATT-T
1 TTTATATTTTATCTATTCT
7667962 TTT
1 TTT
7667965 TCAGCGTCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATATTTTATCTATTCT
Found at i:7669842 original size:61 final size:61
Alignment explanation
Indices: 7669766--7669892 Score: 193
Period size: 61 Copynumber: 2.1 Consensus size: 61
7669756 AAGAGTAAAC
* * * * *
7669766 TCTTTAATTTGTAATTAAAATTATTTGTATTGTTCTTTTATATATTTTTCATCGTATTTTT
1 TCTTTCATTTGTAATTAAAATGATTCGTATTGTTCTTTTATATACTTCTCATCGTATTTTT
*
7669827 TCTTTCATTTGTAATTAAAATGATTCGTATTGTTCTTTTATATACTTCTCATTGTATTTTT
1 TCTTTCATTTGTAATTAAAATGATTCGTATTGTTCTTTTATATACTTCTCATCGTATTTTT
7669888 T-TTTC
1 TCTTTC
7669893 TTCTCAAGTG
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
60 4 0.07
61 56 0.93
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.61
Consensus pattern (61 bp):
TCTTTCATTTGTAATTAAAATGATTCGTATTGTTCTTTTATATACTTCTCATCGTATTTTT
Found at i:7674336 original size:14 final size:15
Alignment explanation
Indices: 7674316--7674358 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
7674306 TTATGGTCAC
7674316 ATTAAAATTATATAT
1 ATTAAAATTATATAT
7674331 -TTAAAATCATATATAT
1 ATTAAAAT--TATATAT
7674347 ATTAAAA-TATAT
1 ATTAAAATTATAT
7674359 TGTTAGCGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 12 0.48
16 7 0.28
17 6 0.24
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
ATTAAAATTATATAT
Found at i:7674345 original size:16 final size:16
Alignment explanation
Indices: 7674316--7674358 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
7674306 TTATGGTCAC
7674316 ATTAAAAT-TATATAT
1 ATTAAAATATATATAT
7674331 -TTAAAATCATATATAT
1 ATTAAAAT-ATATATAT
7674347 ATTAAAATATAT
1 ATTAAAATATAT
7674359 TGTTAGCGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 7 0.28
16 11 0.44
17 7 0.28
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTAAAATATATATAT
Found at i:7681011 original size:24 final size:24
Alignment explanation
Indices: 7680946--7681018 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
7680936 CGTTCGGTAA
*
7680946 TATGTTCGTTCATTTATATTAGTT
1 TATGTTCGTTCATTTATGTTAGTT
*
7680970 TATGTTCATTCATTTATGTTCA-TT
1 TATGTTCGTTCATTTATGTT-AGTT
*
7680994 TATGTTCGTTCGTTTATGTTTAGTT
1 TATGTTCGTTCATTTATG-TTAGTT
7681019 CAATCTCTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 37 0.88
25 5 0.12
ACGTcount: A:0.18, C:0.10, G:0.14, T:0.59
Consensus pattern (24 bp):
TATGTTCGTTCATTTATGTTAGTT
Found at i:7681241 original size:24 final size:24
Alignment explanation
Indices: 7681209--7681266 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
7681199 TCATTTATTA
* * *
7681209 TGTTCGTTTACTTTCGTTCGTTTG
1 TGTTTGTTTACGTTCATTCGTTTG
7681233 TGTTTGTTTACGTTCATTCGTTTG
1 TGTTTGTTTACGTTCATTCGTTTG
7681257 TGTTTGTTTA
1 TGTTTGTTTA
7681267 TCATTTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.07, C:0.12, G:0.21, T:0.60
Consensus pattern (24 bp):
TGTTTGTTTACGTTCATTCGTTTG
Found at i:7682713 original size:35 final size:35
Alignment explanation
Indices: 7682674--7682791 Score: 218
Period size: 35 Copynumber: 3.4 Consensus size: 35
7682664 TTTGAAATTG
*
7682674 TATTTATTTAATAGTTTAAGTTGATTAAAATATAA
1 TATTTATTTAATAGTTTAAGTTGATTAAAAGATAA
7682709 TATTTATTTAATAGTTTAAGTTGATTAAAAGATAA
1 TATTTATTTAATAGTTTAAGTTGATTAAAAGATAA
*
7682744 TATTTATTTAATAGTTTAAGTTGATTAAAAGATTA
1 TATTTATTTAATAGTTTAAGTTGATTAAAAGATAA
7682779 TATTTATTTAATA
1 TATTTATTTAATA
7682792 TTTTTTAATC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 81 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (35 bp):
TATTTATTTAATAGTTTAAGTTGATTAAAAGATAA
Found at i:7686269 original size:30 final size:31
Alignment explanation
Indices: 7686225--7686309 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 31
7686215 TTAAGAGGAT
* * *
7686225 GAATTTTAATTTATAAAATTTTTGG-G-GAAC
1 GAATTTAAACTTATAAAATTTTAGGAGTG-AC
*
7686255 GAATTTAAACTTATATAATTTTAGGAGTGAC
1 GAATTTAAACTTATAAAATTTTAGGAGTGAC
* *
7686286 CAACTTAAACTTATAAAATTTTAG
1 GAATTTAAACTTATAAAATTTTAG
7686310 AAGGATAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
30 21 0.46
31 24 0.52
32 1 0.02
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (31 bp):
GAATTTAAACTTATAAAATTTTAGGAGTGAC
Found at i:7689082 original size:30 final size:31
Alignment explanation
Indices: 7689010--7689099 Score: 98
Period size: 29 Copynumber: 3.0 Consensus size: 31
7689000 TTTTTGTTTG
*
7689010 ACCCCTGAACTTTAGAA-AAAATATTAATTTA
1 ACCCCTAAACTTTA-AATAAAATATTAATTTA
*
7689041 A--CCTAAACTTTAAATAAAATATTATTTTA
1 ACCCCTAAACTTTAAATAAAATATTAATTTA
* *
7689070 ACCCCT-AACTTTAGATAAAAATATCAATTT
1 ACCCCTAAACTTTAAAT-AAAATATTAATTT
7689100 GATCTTTGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
28 2 0.04
29 24 0.48
30 9 0.18
31 15 0.30
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.36
Consensus pattern (31 bp):
ACCCCTAAACTTTAAATAAAATATTAATTTA
Found at i:7699547 original size:18 final size:19
Alignment explanation
Indices: 7699507--7699548 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
7699497 AAAATATAGT
* *
7699507 ATTTTTATGATAATTTTAT
1 ATTTTTATGATAATTTAAA
*
7699526 ATTTTTAT-TTAATTTAAA
1 ATTTTTATGATAATTTAAA
7699544 ATTTT
1 ATTTT
7699549 ATAAATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
ATTTTTATGATAATTTAAA
Found at i:7702577 original size:19 final size:20
Alignment explanation
Indices: 7702553--7702599 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
7702543 ACGTTTTATA
*
7702553 AACAGTAA-AATACGGTATG
1 AACAGTAACAATACCGTATG
7702572 AACAGTGAACAATACCGTATG
1 AACAGT-AACAATACCGTATG
*
7702593 AATAGTA
1 AACAGTA
7702600 GTGAATAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.25
20 3 0.12
21 15 0.62
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (20 bp):
AACAGTAACAATACCGTATG
Found at i:7703094 original size:51 final size:51
Alignment explanation
Indices: 7702863--7703335 Score: 425
Period size: 55 Copynumber: 8.9 Consensus size: 51
7702853 ACGAGTCTGT
* * *
7702863 TCCCTATTCCTTCAG-GAAGTATAAGACTCGAACAATCTTCATA-AAATGTGTCTGC
1 TCCCTATTCCTTCAGAG-AGTATAGGACT----CAATCTTCA-ACAAACGTGTCCGC
* * * *
7702918 TCTCTATTCATTCAGAGAGTATAAGACTTGAACAATCTTCAATAAAACAG-GTCCGC
1 TCCCTATTCCTTCAGAGAGTATAGGAC-T---CAATCTTCAA-CAAAC-GTGTCCGC
* * * * *
7702974 TCTCTACTCCTTCAGAGAGTATAGAACTCGGAAAATCTTCAATAAACAG-GCCCGC
1 TCCCTATTCCTTCAGAGAGTATAGGACTC----AATCTTCAACAAAC-GTGTCCGC
* * * * *
7703029 TCTCTATTCTTTCAGAGAGTATAGGACTCAATTTTTAACAAACGTGTTCGC
1 TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACGTGTCCGC
* *
7703080 TCCCTATTCCTTCAGAGAGTATAGAACTCGAGCAATCTTCATA-AAACGGGTCCGC
1 TCCCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCA-ACAAACGTGTCCGC
* * * *
7703135 TCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACGAACTTGTCCGC
1 TCCCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCAACAAACGTGTCCGC
* * *
7703190 TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCTGC
1 TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACGTGTCCGC
*
7703241 TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACTTGTCCGC
1 TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACGTGTCCGC
*
7703292 TCCCTATTCTTTCAGAGAGTATAGGACTCAATCTTCAACAAACG
1 TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACG
7703336 AATTTGCTTC
Statistics
Matches: 365, Mismatches: 37, Indels: 36
0.83 0.08 0.08
Matches are distributed among these distances:
50 1 0.00
51 153 0.42
52 1 0.00
54 2 0.01
55 164 0.45
56 43 0.12
57 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (51 bp):
TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACGTGTCCGC
Found at i:7703148 original size:161 final size:159
Alignment explanation
Indices: 7702863--7703334 Score: 518
Period size: 161 Copynumber: 2.9 Consensus size: 159
7702853 ACGAGTCTGT
* * *
7702863 TCCCTATTCCTTCAG-GAAGTATAAGACTCGAACAATCTTCATA-AAATGTGTCTGCTCTCTATT
1 TCCCTATTCCTTCAGAG-AGTATAGGACT----CAATCTTCA-ACAAACGTGTCTGCTCCCTATT
* *
7702926 CATTCAGAGAGTATA-AGACTTGAACAATCTTCAATAAAACAGGTCCGCTCTCTACTCCTTCAGA
60 CCTTCAGAGAGTATAGA-AC-TG-ACAATCTTC-ATAAAACAGGTCCGCTCTCTATTCCTTCAGA
*
7702990 GAGTATAGAACTCGGAA-AATCTTCAATAAACAGGCCCGC
121 GAGTATAGAACTC-GAACAATCTTCAACAAACAGGCCCGC
* * * *
7703029 TCTCTATTCTTTCAGAGAGTATAGGACTCAATTTTTAACAAACGTGT-TCGCTCCCTATTCCTTC
1 TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACGTGTCT-GCTCCCTATTCCTTC
*
7703093 AGAGAGTATAGAACTCGAGCAATCTTCATAAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATA
65 AGAGAGTATAGAACT-GA-CAATCTTCATAAAACAGGTCCGCTCTCTATTCCTTCAGAGAGTATA
* ** *
7703158 GAACTCGAACAATCTTCAACGAACTTGTCCGC
128 GAACTCGAACAATCTTCAACAAACAGGCCCGC
* *
7703190 TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACTTGTCTGCTCCCTATTCCTTCA
1 TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACGTGTCTGCTCCCTATTCCTTCA
* ** * * *
7703255 GAGAGTATAGGACT--CAATCTTCA-ACAAACTTGTCCGCTCCCTATTCTTTCAGAGAGTATAGG
66 GAGAGTATAGAACTGACAATCTTCATA-AAACAGGTCCGCTCTCTATTCCTTCAGAGAGTATAGA
7703317 ACT----CAATCTTCAACAAAC
130 ACTCGAACAATCTTCAACAAAC
7703335 GAATTTGCTT
Statistics
Matches: 269, Mismatches: 28, Indels: 31
0.82 0.09 0.09
Matches are distributed among these distances:
153 14 0.05
156 1 0.00
157 44 0.16
160 3 0.01
161 133 0.49
162 49 0.18
163 1 0.00
166 23 0.09
167 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (159 bp):
TCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACGTGTCTGCTCCCTATTCCTTCA
GAGAGTATAGAACTGACAATCTTCATAAAACAGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAA
CTCGAACAATCTTCAACAAACAGGCCCGC
Found at i:7704680 original size:16 final size:16
Alignment explanation
Indices: 7704648--7704752 Score: 80
Period size: 15 Copynumber: 6.7 Consensus size: 16
7704638 TGAACCCTCC
* *
7704648 TTTT-ATTTCTCTTTT
1 TTTTCATTTTTCTCTT
7704663 TTTTCATTTTTCTC-T
1 TTTTCATTTTTCTCTT
7704678 TTTT-ATTTTTCTTTCTTT
1 TTTTCATTTTTC--TC-TT
*
7704696 TTTTCATTTTTAT-TT
1 TTTTCATTTTTCTCTT
7704711 TTTCTCATTTTT-TCTT
1 TTT-TCATTTTTCTCTT
7704727 TTCTTC-TTTTTCT-TT
1 TT-TTCATTTTTCTCTT
*
7704742 TTCTCATTTTT
1 TTTTCATTTTT
7704753 ATTATTATTT
Statistics
Matches: 75, Mismatches: 4, Indels: 22
0.74 0.04 0.22
Matches are distributed among these distances:
14 9 0.12
15 29 0.39
16 24 0.32
17 2 0.03
18 5 0.07
19 6 0.08
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTCATTTTTCTCTT
Found at i:7704696 original size:24 final size:24
Alignment explanation
Indices: 7704659--7704775 Score: 111
Period size: 24 Copynumber: 5.0 Consensus size: 24
7704649 TTTATTTCTC
7704659 TTTTTTTTCATTTTTCTC-TTTTTA
1 TTTTTTTTC-TTTTTCTCATTTTTA
*
7704683 TTTTTCTTTCTTTTTTTCATTTTTA
1 TTTTT-TTTCTTTTTCTCATTTTTA
* *
7704708 TTTTTTCTCATTTTT-TC--TTTTC
1 TTTTTTTTC-TTTTTCTCATTTTTA
*
7704730 TTCTTTTTCTTTTTCTCATTTTTA
1 TTTTTTTTCTTTTTCTCATTTTTA
*
7704754 TTATTATTT-TTTTT-TCATTTTT
1 TT-TTTTTTCTTTTTCTCATTTTT
7704776 CGTTTTTTCG
Statistics
Matches: 78, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
21 5 0.06
22 13 0.17
23 8 0.10
24 28 0.36
25 24 0.31
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.79
Consensus pattern (24 bp):
TTTTTTTTCTTTTTCTCATTTTTA
Found at i:7704697 original size:32 final size:32
Alignment explanation
Indices: 7704653--7704776 Score: 117
Period size: 33 Copynumber: 3.7 Consensus size: 32
7704643 CCTCCTTTTA
*
7704653 TTTCTCTTTTTTTTCATTTTTCTCTTTTTATT
1 TTTCTTTTTTTTTTCATTTTTCTCTTTTTATT
* *
7704685 TTTCTTTCTTTTTTTCATTTTTATTTTTTCTCATTT
1 TTTCTTT-TTTTTTTCATTTTTCTCTTTT-T-A-TT
7704721 TTTCTTTTCTTCTTTTTC-TTTTTCTCATTTTTATT
1 TTTC-TTT-TT-TTTTTCATTTTTCTC-TTTTTATT
* *
7704756 ATT-ATTTTTTTTTCATTTTTC
1 TTTCTTTTTTTTTTCATTTTTC
7704777 GTTTTTTCGT
Statistics
Matches: 77, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
31 6 0.08
32 14 0.18
33 21 0.27
34 1 0.01
35 5 0.06
36 7 0.09
37 13 0.17
38 10 0.13
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (32 bp):
TTTCTTTTTTTTTTCATTTTTCTCTTTTTATT
Found at i:7704713 original size:14 final size:14
Alignment explanation
Indices: 7704662--7704795 Score: 65
Period size: 15 Copynumber: 9.8 Consensus size: 14
7704652 ATTTCTCTTT
7704662 TTTTTCATTTTTCTC-
1 TTTTT-ATTTTT-TCA
7704677 TTTTTA-TTTTTC-
1 TTTTTATTTTTTCA
*
7704689 TTTCT-TTTTTTCA
1 TTTTTATTTTTTCA
7704702 TTTTTATTTTTTCTCA
1 TTTTTA-TTTTT-TCA
*
7704718 TTTTTTCTTTTCTTC-
1 -TTTTTATTTT-TTCA
*
7704733 TTTTTCTTTTTCTCA
1 TTTTTATTTTT-TCA
*
7704748 TTTTTA-TTATT-A
1 TTTTTATTTTTTCA
7704760 --TTT-TTTTTTCA
1 TTTTTATTTTTTCA
* *
7704771 TTTTTCGTTTTTTCG
1 TTTTT-ATTTTTTCA
7704786 TTTTT-TTTTT
1 TTTTTATTTTT
7704796 AATTTCTTCT
Statistics
Matches: 97, Mismatches: 7, Indels: 32
0.71 0.05 0.24
Matches are distributed among these distances:
10 7 0.07
11 1 0.01
12 13 0.13
13 18 0.19
14 16 0.16
15 27 0.28
16 9 0.09
17 6 0.06
ACGTcount: A:0.07, C:0.13, G:0.01, T:0.78
Consensus pattern (14 bp):
TTTTTATTTTTTCA
Found at i:7704745 original size:30 final size:32
Alignment explanation
Indices: 7704689--7704752 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 32
7704679 TTTATTTTTC
* *
7704689 TTTCTTTTTTTCATTTTTATTTTTTCTCATTT
1 TTTCTTTTCTTCATTTTTACTTTTTCTCATTT
7704721 TTTCTTTTCTTC-TTTTT-CTTTTTCTCATTT
1 TTTCTTTTCTTCATTTTTACTTTTTCTCATTT
7704751 TT
1 TT
7704753 ATTATTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 14 0.47
31 5 0.17
32 11 0.37
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (32 bp):
TTTCTTTTCTTCATTTTTACTTTTTCTCATTT
Found at i:7704767 original size:30 final size:32
Alignment explanation
Indices: 7704709--7704776 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 32
7704699 TCATTTTTAT
7704709 TTTTTCTCATTTTTTCT-TT-TCTTCTTTTTC-
1 TTTTTCTCATTTTTTCTATTAT-TTCTTTTTCA
*
7704739 TTTTTCTCATTTTTAT-TATTATTTTTTTTTCA
1 TTTTTCTCATTTTT-TCTATTATTTCTTTTTCA
7704771 TTTTTC
1 TTTTTC
7704777 GTTTTTTCGT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
30 15 0.45
31 11 0.33
32 7 0.21
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (32 bp):
TTTTTCTCATTTTTTCTATTATTTCTTTTTCA
Found at i:7704783 original size:46 final size:45
Alignment explanation
Indices: 7704689--7704790 Score: 111
Period size: 46 Copynumber: 2.2 Consensus size: 45
7704679 TTTATTTTTC
* *
7704689 TTTCTTTTTTTCATTTTTATTTTTTCTCATTTTTTCTTTTCTTCTT
1 TTTCTTTTTCTCATTTTTATTTTTTCT-ATTTTTTCTTTTCGTCTT
7704735 TTTCTTTTTCTCATTTTTATTATTATT-T-TTTTTTCATTTTTCGT-TT
1 TTTCTTTTTCTCATTTTTATT-TT-TTCTATTTTTTC--TTTTCGTCTT
7704781 TTTCGTTTTT
1 TTTC-TTTTT
7704791 TTTTTAATTT
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
45 7 0.14
46 26 0.53
47 14 0.29
48 2 0.04
ACGTcount: A:0.08, C:0.13, G:0.02, T:0.77
Consensus pattern (45 bp):
TTTCTTTTTCTCATTTTTATTTTTTCTATTTTTTCTTTTCGTCTT
Found at i:7704794 original size:71 final size:72
Alignment explanation
Indices: 7704648--7704784 Score: 183
Period size: 71 Copynumber: 1.9 Consensus size: 72
7704638 TGAACCCTCC
* * *
7704648 TTTTATTTCTCTTTTTTTTCATTTTTCTCTTTTTATTTTTCTTTCTTTTTTTCATTTTTATTTTT
1 TTTTATTTCTCTTCTTTTTCATTTTTCTCTTTTTATTATTCATTCTTTTTTTCATTTTTATTTTT
7704713 TCTCATT
66 TCTCATT
* *
7704720 TTTTCTTT-TCTTCTTTTTC-TTTTTCTCATTTTTATTATT-ATT-TTTTTTTCATTTTTCGTTT
1 TTTTATTTCTCTTCTTTTTCATTTTTCTC-TTTTTATTATTCATTCTTTTTTTCATTTTT-ATTT
7704781 TTTC
64 TTTC
7704785 GTTTTTTTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
69 14 0.24
70 17 0.29
71 20 0.34
72 7 0.12
ACGTcount: A:0.08, C:0.14, G:0.01, T:0.77
Consensus pattern (72 bp):
TTTTATTTCTCTTCTTTTTCATTTTTCTCTTTTTATTATTCATTCTTTTTTTCATTTTTATTTTT
TCTCATT
Found at i:7718548 original size:32 final size:32
Alignment explanation
Indices: 7718444--7718568 Score: 103
Period size: 31 Copynumber: 4.0 Consensus size: 32
7718434 AACCTCAGCA
* * * *
7718444 ACTGTCCATAGGTCTCGTAGAACCTAGGTAA-
1 ACTGTCCATATGTCCCGAAGAACATAGGTAAT
* * * ** *
7718475 ATTGTCTATATGTTCCTTAGAATATAGGT-AT
1 ACTGTCCATATGTCCCGAAGAACATAGGTAAT
7718506 ACTGTCCATATGTCCCGAA-AGACATAGGTAAT
1 ACTGTCCATATGTCCCGAAGA-ACATAGGTAAT
* * *
7718538 TCTGTCCATATGTTCCGTAGAACATAGGTAA
1 ACTGTCCATATGTCCCGAAGAACATAGGTAA
7718569 ACCCTCGACT
Statistics
Matches: 73, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
30 2 0.03
31 42 0.58
32 28 0.38
33 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (32 bp):
ACTGTCCATATGTCCCGAAGAACATAGGTAAT
Found at i:7723049 original size:4 final size:4
Alignment explanation
Indices: 7723040--7723068 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7723030 AATTAAACTT
7723040 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
7723069 GTATGTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:7736409 original size:20 final size:20
Alignment explanation
Indices: 7736384--7736444 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 20
7736374 ATCAGATTGT
7736384 CCAGGGGTACAGATTCCCCC
1 CCAGGGGTACAGATTCCCCC
7736404 CCAGGGGGTACAGATT-CCCC
1 CCA-GGGGTACAGATTCCCCC
*
7736424 CCAGGGGTACCGATTACCCCC
1 CCAGGGGTACAGATT-CCCCC
7736445 TGTCTAACGG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 11 0.30
20 10 0.27
21 16 0.43
ACGTcount: A:0.20, C:0.39, G:0.26, T:0.15
Consensus pattern (20 bp):
CCAGGGGTACAGATTCCCCC
Found at i:7736430 original size:19 final size:20
Alignment explanation
Indices: 7736384--7736444 Score: 88
Period size: 20 Copynumber: 3.0 Consensus size: 20
7736374 ATCAGATTGT
*
7736384 CCAGGGGTACAGATTCCCCC
1 CCAGGGGTACAGATTACCCC
7736404 CCAGGGGGTACAGATT-CCCC
1 CCA-GGGGTACAGATTACCCC
*
7736424 CCAGGGGTACCGATTACCCC
1 CCAGGGGTACAGATTACCCC
7736444 C
1 C
7736445 TGTCTAACGG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
19 11 0.29
20 15 0.39
21 12 0.32
ACGTcount: A:0.20, C:0.39, G:0.26, T:0.15
Consensus pattern (20 bp):
CCAGGGGTACAGATTACCCC
Found at i:7736569 original size:21 final size:21
Alignment explanation
Indices: 7736543--7736593 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
7736533 AATTGTTTCT
7736543 CATCCCCAAACGGCTTCAAAA
1 CATCCCCAAACGGCTTCAAAA
7736564 CATCCCCAAACGGCTTCAAAA
1 CATCCCCAAACGGCTTCAAAA
7736585 CATCCCCAA
1 CATCCCCAA
7736594 CGACTATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.37, C:0.41, G:0.08, T:0.14
Consensus pattern (21 bp):
CATCCCCAAACGGCTTCAAAA
Found at i:7746519 original size:18 final size:19
Alignment explanation
Indices: 7746478--7746519 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
7746468 CACGAGATAA
7746478 TGCTCTCCCAAGATTAATT
1 TGCTCTCCCAAGATTAATT
7746497 TGCTCTCCCAAGATTAA-T
1 TGCTCTCCCAAGATTAATT
7746515 TGCTC
1 TGCTC
7746520 GAATAAGGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.36
Consensus pattern (19 bp):
TGCTCTCCCAAGATTAATT
Found at i:7748182 original size:20 final size:20
Alignment explanation
Indices: 7748157--7748199 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7748147 CTTTTATGAT
*
7748157 AATTAAATTAACTATCAATA
1 AATTAAACTAACTATCAATA
* *
7748177 AATTAAACTAACTTTTAATA
1 AATTAAACTAACTATCAATA
7748197 AAT
1 AAT
7748200 AATTTTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTAAACTAACTATCAATA
Found at i:7751981 original size:23 final size:23
Alignment explanation
Indices: 7751951--7751994 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
7751941 ATCCCACGAC
7751951 CTCAAGGTTAAGAACCTTGTGCT
1 CTCAAGGTTAAGAACCTTGTGCT
7751974 CTCAAGGTTAAGAACCTTGTG
1 CTCAAGGTTAAGAACCTTGTG
7751995 TTCTACCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (23 bp):
CTCAAGGTTAAGAACCTTGTGCT
Found at i:7761185 original size:16 final size:16
Alignment explanation
Indices: 7761164--7761194 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7761154 GACTGACATA
7761164 CATCTAAAAACAAATG
1 CATCTAAAAACAAATG
*
7761180 CATCTACAAACAAAT
1 CATCTAAAAACAAAT
7761195 CTTCTGCTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.23, G:0.03, T:0.19
Consensus pattern (16 bp):
CATCTAAAAACAAATG
Found at i:7765369 original size:175 final size:175
Alignment explanation
Indices: 7765078--7765421 Score: 530
Period size: 175 Copynumber: 2.0 Consensus size: 175
7765068 TTATTTTTCC
* ** **
7765078 TTTCACTAACTCCATTTTACTACAGTGAATAAGGAGTTGTCAACTAATGCTCAATGTCAGCTTCT
1 TTTCACTAACTCCACTTTACTACAGCAAATAAGGAAATGTCAACTAATGCTCAATGTCAGCTTCT
* *
7765143 TCATAAAATGCATTGAAATTTTCTAACGTATACTCTTTTCCATTGTCAGACCTCAATATT-TGAA
66 TCATAAAATGCATTGAAATTTTCTAACGTATACTCATTTCCATTATCAGACCTCAATATTAT-AA
*
7765207 TGTGATTGCCACTTTGATTTTCCACCATTCTTTTGAATTTTCAAAA
130 TGTGATTGCCACTTTGATTTTCCACCATTCTTTTAAATTTTCAAAA
* *
7765253 TTTCACTAACTCCACTTTGCTACAGCAAATAAGGAAATGTCAACTGATGCTCAATGTCAGCTTCT
1 TTTCACTAACTCCACTTTACTACAGCAAATAAGGAAATGTCAACTAATGCTCAATGTCAGCTTCT
* * *
7765318 TCATAAAATGCATTGAAATTATT-TTACGTATACTCATTTCCATTATCAGACCTTACTATTATAA
66 TCATAAAATGCATTGAAATT-TTCTAACGTATACTCATTTCCATTATCAGACCTCAATATTATAA
*
7765382 TGTGATTGCCACTTTGATTTTCTACCATTCTTTTAAATTT
130 TGTGATTGCCACTTTGATTTTCCACCATTCTTTTAAATTT
7765422 CCAGAATGCT
Statistics
Matches: 153, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
175 150 0.98
176 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.40
Consensus pattern (175 bp):
TTTCACTAACTCCACTTTACTACAGCAAATAAGGAAATGTCAACTAATGCTCAATGTCAGCTTCT
TCATAAAATGCATTGAAATTTTCTAACGTATACTCATTTCCATTATCAGACCTCAATATTATAAT
GTGATTGCCACTTTGATTTTCCACCATTCTTTTAAATTTTCAAAA
Found at i:7777442 original size:712 final size:709
Alignment explanation
Indices: 7776082--7777493 Score: 2797
Period size: 712 Copynumber: 2.0 Consensus size: 709
7776072 TCTTTGTTTC
7776082 CCATTTTTTTAGGTCATGAGTTTTAGACTTACTGTGAGTATTCTCTTCTCTTTTATTGTCAGTGA
1 CCATTTTTTTAGGTCATGAGTTTTAGACTTACTGTGAGTATTCTCTTCTCTTTTATTGTCAGTGA
7776147 TGGAACATGACGGAGGCCGTTGTCTTCCTAAAATTTTCAAAGTGCCATACATTTTAAATATTTTT
66 TGGAACATGACGGAGGCCGTTGTCTTCCTAAAATTTTCAAAGTGCCATACATTTTAAATATTTTT
7776212 TATATTTTTATGATAATATTTTATATTTTAAAAAAAAAATAATTTTATGTCCTTTTAAATTTTAT
131 TATATTTTTATGATAATATTTTATATTTTAAAAAAAAAATAATTTTATGTCCTTTTAAATTTTAT
7776277 TAGTCCACCCTTCATATAAAATATTTACATAGATGCATACTTGTATTAAAATCTCTTATTTAAAG
196 TAGTCCACCCTTCATATAAAATATTTACATAGATGCATACTTGTATTAAAATCTCTTATTTAAAG
7776342 GATATTTTAGTTTATTTTGTTTTTCTTCCATTGTCTTGTATCAACAGAAGTAGAAAAAATCATTT
261 GATATTTTAGTTTATTTTGTTTTTCTTCCATTGTCTTGTATCAACAGAAGTAGAAAAAATCATTT
7776407 CTAATCTTAAATTTTAATTTCTTAATTAATTTTATGTAAAAGCATATGTTTTTTTTAAATCATTA
326 CTAATCTTAAATTTTAATTTCTTAATTAATTTTATGTAAAAGCATATGTTTTTTTTAAATCATTA
7776472 ACCTAATAATTTCATGGATAAATGGTTCTAACATTGAATTGAAGGAGGTAATTGTGAGTAATGAA
391 ACCTAATAATTTCATGGATAAATGGTTCTAACATTGAATTGAAGGAGGTAATTGTGAGTAATGAA
7776537 TTAAGGCCAACACGTACACCGTTTCTGATGCTTTTCAATTTTTATAATTTTTCATCATCAGTGCT
456 TTAAGGCCAACACGTACACCGTTTCTGATGCTTTTCAATTTTTATAATTTTTCATCATCAGTGCT
7776602 CAACTAACAAAAGAAATTGACTAAAAAACCACATTAACTTATTTTACCATTTTAAATTAGCCCTA
521 CAACTAACAAAAGAAATTGACTAAAAAACCACATTAACTTATTTTACCATTTTAAATTAGCCCTA
7776667 ATATTTCACACTTTGATTAATGGTTAATTAAAGCCACTTATTCCAAACAAAAAATACTTACGTTA
586 ATATTTCACACTTTGATTAATGGTTAATTAAAGCCACTTATTCCAAACAAAAAATACTTACGTTA
7776732 AACTTTTTATGGTAGAGAGGTAGAGATTTCGAGTTTGACCAATTATATTTCGAGTTTGA
651 AACTTTTTATGGTAGAGAGGTAGAGATTTCGAGTTTGACCAATTATATTTCGAGTTTGA
7776791 CCATTTTTTTAGGTCATGAGTTTTAGACTTACTGTGAGTATTCTCTTCTCTTTTATTGTCAGTGA
1 CCATTTTTTTAGGTCATGAGTTTTAGACTTACTGTGAGTATTCTCTTCTCTTTTATTGTCAGTGA
7776856 TGGAACATGACGGAGGCCGTTGTCTTCCTAAAATTTTCAAAGTGCCATACATTTTAAATATTTTT
66 TGGAACATGACGGAGGCCGTTGTCTTCCTAAAATTTTCAAAGTGCCATACATTTTAAATATTTTT
7776921 TATATTTTTATGATAATATTTTATATTTTAAAAAAAAAATTATAATTTTATGTCCTTTTAAATTT
131 TATATTTTTATGATAATATTTTATATTTT-AAAAAAAAA--ATAATTTTATGTCCTTTTAAATTT
7776986 TATTAGTCCACCCTTCATATAAAATATTTACATAGATGCATACTTGTATTAAAATCTCTTATTTA
193 TATTAGTCCACCCTTCATATAAAATATTTACATAGATGCATACTTGTATTAAAATCTCTTATTTA
7777051 AAGGATATTTTAGTTTATTTTGTTTTTCTTCCATTGTCTTGTATCAACAGAAGTAGAAAAAATCA
258 AAGGATATTTTAGTTTATTTTGTTTTTCTTCCATTGTCTTGTATCAACAGAAGTAGAAAAAATCA
7777116 TTTCTAATCTTAAATTTTAATTTCTTAATTAATTTTATGTAAAAGCATATGTTTTTTTTAAATCA
323 TTTCTAATCTTAAATTTTAATTTCTTAATTAATTTTATGTAAAAGCATATGTTTTTTTTAAATCA
7777181 TTAACCTAATAATTTCATGGATAAATGGTTCTAACATTGAATTGAAGGAGGTAATTGTGAGTAAT
388 TTAACCTAATAATTTCATGGATAAATGGTTCTAACATTGAATTGAAGGAGGTAATTGTGAGTAAT
7777246 GAATTAAGGCCAACACGTACACCGTTTCTGATGCTTTTCAATTTTTATAATTTTTCATCATCAGT
453 GAATTAAGGCCAACACGTACACCGTTTCTGATGCTTTTCAATTTTTATAATTTTTCATCATCAGT
7777311 GCTCAACTAACAAAAGAAATTGACTAAAAAACCACATTAACTTATTTTACCATTTTAAATTAGCC
518 GCTCAACTAACAAAAGAAATTGACTAAAAAACCACATTAACTTATTTTACCATTTTAAATTAGCC
7777376 CTAATATTTCACACTTTGATTAATGGTTAATTAAAGCCACTTATTCCAAACAAAAAATACTTACG
583 CTAATATTTCACACTTTGATTAATGGTTAATTAAAGCCACTTATTCCAAACAAAAAATACTTACG
7777441 TTAAACTTTTTATGGTAGAGAGGTAGAGATTTCGAGTTTGACCAATTATATTT
648 TTAAACTTTTTATGGTAGAGAGGTAGAGATTTCGAGTTTGACCAATTATATTT
7777494 TTTTTAAATA
Statistics
Matches: 700, Mismatches: 0, Indels: 3
1.00 0.00 0.00
Matches are distributed among these distances:
709 159 0.23
710 9 0.01
712 532 0.76
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (709 bp):
CCATTTTTTTAGGTCATGAGTTTTAGACTTACTGTGAGTATTCTCTTCTCTTTTATTGTCAGTGA
TGGAACATGACGGAGGCCGTTGTCTTCCTAAAATTTTCAAAGTGCCATACATTTTAAATATTTTT
TATATTTTTATGATAATATTTTATATTTTAAAAAAAAAATAATTTTATGTCCTTTTAAATTTTAT
TAGTCCACCCTTCATATAAAATATTTACATAGATGCATACTTGTATTAAAATCTCTTATTTAAAG
GATATTTTAGTTTATTTTGTTTTTCTTCCATTGTCTTGTATCAACAGAAGTAGAAAAAATCATTT
CTAATCTTAAATTTTAATTTCTTAATTAATTTTATGTAAAAGCATATGTTTTTTTTAAATCATTA
ACCTAATAATTTCATGGATAAATGGTTCTAACATTGAATTGAAGGAGGTAATTGTGAGTAATGAA
TTAAGGCCAACACGTACACCGTTTCTGATGCTTTTCAATTTTTATAATTTTTCATCATCAGTGCT
CAACTAACAAAAGAAATTGACTAAAAAACCACATTAACTTATTTTACCATTTTAAATTAGCCCTA
ATATTTCACACTTTGATTAATGGTTAATTAAAGCCACTTATTCCAAACAAAAAATACTTACGTTA
AACTTTTTATGGTAGAGAGGTAGAGATTTCGAGTTTGACCAATTATATTTCGAGTTTGA
Found at i:7781269 original size:18 final size:18
Alignment explanation
Indices: 7781246--7781282 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7781236 ACGCTCCCCG
7781246 CCCTTGTATAATCTTTTC
1 CCCTTGTATAATCTTTTC
7781264 CCCTTGTATAATCTTTTC
1 CCCTTGTATAATCTTTTC
7781282 C
1 C
7781283 GCTTCGTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.30, G:0.05, T:0.49
Consensus pattern (18 bp):
CCCTTGTATAATCTTTTC
Found at i:7785106 original size:473 final size:473
Alignment explanation
Indices: 7784221--7785166 Score: 1883
Period size: 473 Copynumber: 2.0 Consensus size: 473
7784211 ATAGAACTTT
7784221 TAATAAAAAGAATCAAGCTATAAGATGGTTATTTCTTCTATTTTGCAGGAACCTGGTAAACAGAC
1 TAATAAAAAGAATCAAGCTATAAGATGGTTATTTCTTCTATTTTGCAGGAACCTGGTAAACAGAC
7784286 TAAACAGGTGCAGCCTGAAAAGAAAGAAGATCCCAATTTCCAGGCATTCACTAGGAGAAAGTACT
66 TAAACAGGTGCAGCCTGAAAAGAAAGAAGATCCCAATTTCCAGGCATTCACTAGGAGAAAGTACT
7784351 CATTAAAGGGTTGATTAAATCAATCCATAATTCCTTAATGCTTTTAATATGGCTTTCGATAGAGG
131 CATTAAAGGGTTGATTAAATCAATCCATAATTCCTTAATGCTTTTAATATGGCTTTCGATAGAGG
*
7784416 AAAGTAACAAATTACATATTCATATGGAATGTTTTATTATCAAAATACTGATGTGTAGGTTCTCC
196 AAAGTAACAAATTACATATTCATATCGAATGTTTTATTATCAAAATACTGATGTGTAGGTTCTCC
7784481 GTATCGAAGCGAAAATGATAGAATTACAAGCAAAAACTTGAGAAATAAATTGCAGATGCTTATAG
261 GTATCGAAGCGAAAATGATAGAATTACAAGCAAAAACTTGAGAAATAAATTGCAGATGCTTATAG
7784546 TAGACGCGTATTTTCTGGTGCTCACAGTCGAGCTCAAATAACATACCTGGTACATGCTACCAAGT
326 TAGACGCGTATTTTCTGGTGCTCACAGTCGAGCTCAAATAACATACCTGGTACATGCTACCAAGT
7784611 TTCTGGAAGATGCATATTTAGAGGGGAGGCAAACATCGAACATATAGCATCTATTCTAGACTGAA
391 TTCTGGAAGATGCATATTTAGAGGGGAGGCAAACATCGAACATATAGCATCTATTCTAGACTGAA
7784676 TGCTAATTTAGGAGGGAG
456 TGCTAATTTAGGAGGGAG
7784694 TAATAAAAAGAATCAAGCTATAAGATGGTTATTTCTTCTATTTTGCAGGAACCTGGTAAACAGAC
1 TAATAAAAAGAATCAAGCTATAAGATGGTTATTTCTTCTATTTTGCAGGAACCTGGTAAACAGAC
7784759 TAAACAGGTGCAGCCTGAAAAGAAAGAAGATCCCAATTTCCAGGCATTCACTAGGAGAAAGTACT
66 TAAACAGGTGCAGCCTGAAAAGAAAGAAGATCCCAATTTCCAGGCATTCACTAGGAGAAAGTACT
7784824 CATTAAAGGGTTGATTAAATCAATCCATAATTCCTTAATGCTTTTAATATGGCTTTCGATAGAGG
131 CATTAAAGGGTTGATTAAATCAATCCATAATTCCTTAATGCTTTTAATATGGCTTTCGATAGAGG
7784889 AAAGTAACAAATTACATATTCATATCGAATGTTTTATTATCAAAATACTGATGTGTAGGTTCTCC
196 AAAGTAACAAATTACATATTCATATCGAATGTTTTATTATCAAAATACTGATGTGTAGGTTCTCC
7784954 GTATCGAAGCGAAAATGATAGAATTACAAGCAAAAACTTGAGAAATAAATTGCAGATGCTTATAG
261 GTATCGAAGCGAAAATGATAGAATTACAAGCAAAAACTTGAGAAATAAATTGCAGATGCTTATAG
7785019 TAGACGCGTATTTTCTGGTGCTCACAGTCGAGCTCAAATAACATACCTGGTACATGCTACCAAGT
326 TAGACGCGTATTTTCTGGTGCTCACAGTCGAGCTCAAATAACATACCTGGTACATGCTACCAAGT
7785084 TTCTGGAAGATGCATATTTAGAGGGGAGGCAAACATCGAACATATAGCATCTATTCTAGACTGAA
391 TTCTGGAAGATGCATATTTAGAGGGGAGGCAAACATCGAACATATAGCATCTATTCTAGACTGAA
7785149 TGCTAATTTAGGAGGGAG
456 TGCTAATTTAGGAGGGAG
7785167 ATGATATTTA
Statistics
Matches: 472, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
473 472 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (473 bp):
TAATAAAAAGAATCAAGCTATAAGATGGTTATTTCTTCTATTTTGCAGGAACCTGGTAAACAGAC
TAAACAGGTGCAGCCTGAAAAGAAAGAAGATCCCAATTTCCAGGCATTCACTAGGAGAAAGTACT
CATTAAAGGGTTGATTAAATCAATCCATAATTCCTTAATGCTTTTAATATGGCTTTCGATAGAGG
AAAGTAACAAATTACATATTCATATCGAATGTTTTATTATCAAAATACTGATGTGTAGGTTCTCC
GTATCGAAGCGAAAATGATAGAATTACAAGCAAAAACTTGAGAAATAAATTGCAGATGCTTATAG
TAGACGCGTATTTTCTGGTGCTCACAGTCGAGCTCAAATAACATACCTGGTACATGCTACCAAGT
TTCTGGAAGATGCATATTTAGAGGGGAGGCAAACATCGAACATATAGCATCTATTCTAGACTGAA
TGCTAATTTAGGAGGGAG
Found at i:7787826 original size:20 final size:20
Alignment explanation
Indices: 7787787--7787826 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7787777 TCTGGGCTAG
* *
7787787 GGGAATCGGTACCCATTCAA
1 GGGAATCGATACCCACTCAA
*
7787807 GGGAATCGATACCCCCTCAA
1 GGGAATCGATACCCACTCAA
7787827 CGAATATGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.17
Consensus pattern (20 bp):
GGGAATCGATACCCACTCAA
Found at i:7787877 original size:19 final size:19
Alignment explanation
Indices: 7787853--7787889 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7787843 GAATGCTTGA
*
7787853 GGGGAATCGATACCCCCAG
1 GGGGAACCGATACCCCCAG
*
7787872 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
7787890 TATAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.35, G:0.30, T:0.11
Consensus pattern (19 bp):
GGGGAACCGATACCCCCAG
Found at i:7787913 original size:14 final size:14
Alignment explanation
Indices: 7787894--7787920 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7787884 CCCCCATATA
7787894 AAAAAAAGAAGAAG
1 AAAAAAAGAAGAAG
7787908 AAAAAAAGAAGAA
1 AAAAAAAGAAGAA
7787921 AGACTAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAGAAG
Found at i:7788570 original size:23 final size:23
Alignment explanation
Indices: 7788526--7788570 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7788516 ATTATTATAT
*
7788526 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
7788549 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
7788571 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:7794658 original size:21 final size:21
Alignment explanation
Indices: 7794616--7794658 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7794606 TTTCTGGGCT
* *
7794616 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
7794637 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
7794658 A
1 A
7794659 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:7794710 original size:20 final size:20
Alignment explanation
Indices: 7794685--7794722 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7794675 GAATGCTTGA
*
7794685 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
7794705 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
7794723 TATAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:7794747 original size:13 final size:13
Alignment explanation
Indices: 7794728--7794757 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
7794718 CCCCATATAA
7794728 AAAAAAAGAAGAAG
1 AAAAAAA-AAGAAG
7794742 AAAAAAAAAGAAG
1 AAAAAAAAAGAAG
7794755 AAA
1 AAA
7794758 GACTAAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGAAG
Found at i:7794747 original size:16 final size:16
Alignment explanation
Indices: 7794726--7794756 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7794716 TCCCCCATAT
7794726 AAAAAAAAAGAAGAAG
1 AAAAAAAAAGAAGAAG
7794742 AAAAAAAAAGAAGAA
1 AAAAAAAAAGAAGAA
7794757 AGACTAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAGAAG
Found at i:7795435 original size:23 final size:23
Alignment explanation
Indices: 7795368--7795427 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
7795358 ATTATTATAT
*
7795368 GGCACTACGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
7795391 GGCACTTCGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
7795414 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
7795428 TTTATACGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.18, C:0.30, G:0.28, T:0.23
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:7802989 original size:18 final size:16
Alignment explanation
Indices: 7802965--7803010 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
7802955 TAGAATACTT
*
7802965 TAAATATAAAAAAATAT
1 TAAATATAAAAAAA-AG
*
7802982 TAAAATATTAAAAAAAG
1 T-AAATATAAAAAAAAG
7802999 TAAATATAAAAA
1 TAAATATAAAAA
7803011 TTTAAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 10 0.40
17 3 0.12
18 12 0.48
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (16 bp):
TAAATATAAAAAAAAG
Found at i:7805011 original size:17 final size:18
Alignment explanation
Indices: 7804986--7805029 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
7804976 CATGTATGTA
*
7804986 TTATTAATAAATAATTA-T
1 TTATAAATAAAT-ATTACT
7805004 TT-TAAATAAATATTACT
1 TTATAAATAAATATTACT
7805021 TTATAAATA
1 TTATAAATA
7805030 CTCTAGATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.17
17 11 0.48
18 8 0.35
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
TTATAAATAAATATTACT
Found at i:7807873 original size:14 final size:14
Alignment explanation
Indices: 7807854--7807883 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7807844 CTATAATATT
*
7807854 TACTCTACACAGAG
1 TACTCTAAACAGAG
7807868 TACTCTAAACAGAG
1 TACTCTAAACAGAG
7807882 TA
1 TA
7807884 GCATCCGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.23
Consensus pattern (14 bp):
TACTCTAAACAGAG
Found at i:7816238 original size:22 final size:22
Alignment explanation
Indices: 7816213--7816256 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7816203 TGCACTTTCG
7816213 GTGCAACCCCTTTCTATGACTT
1 GTGCAACCCCTTTCTATGACTT
* *
7816235 GTGCAGCCCCTTTTTATGACTT
1 GTGCAACCCCTTTCTATGACTT
7816257 TTAACGAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.30, G:0.16, T:0.39
Consensus pattern (22 bp):
GTGCAACCCCTTTCTATGACTT
Found at i:7818203 original size:19 final size:18
Alignment explanation
Indices: 7818167--7818206 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
7818157 AAAAATTATT
*
7818167 AATATTTTAAAAAGTCAA
1 AATATTTTAAAAACTCAA
*
7818185 AATATTTCTAAAATCTCAA
1 AATATTT-TAAAAACTCAA
7818204 AAT
1 AAT
7818207 CTTTAATCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.35
Consensus pattern (18 bp):
AATATTTTAAAAACTCAA
Found at i:7818216 original size:15 final size:16
Alignment explanation
Indices: 7818196--7818235 Score: 73
Period size: 15 Copynumber: 2.6 Consensus size: 16
7818186 ATATTTCTAA
7818196 AATCTCAAAATC-TTT
1 AATCTCAAAATCTTTT
7818211 AATCTCAAAATCTTTT
1 AATCTCAAAATCTTTT
7818227 AATCTCAAA
1 AATCTCAAA
7818236 GCATCCACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (16 bp):
AATCTCAAAATCTTTT
Found at i:7829640 original size:20 final size:21
Alignment explanation
Indices: 7829605--7829650 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
7829595 ATAATATTAT
7829605 ATATATTTTAACATT-ACTAA
1 ATATATTTTAACATTAACTAA
** *
7829625 ATATATTTTATTATTAACTTA
1 ATATATTTTAACATTAACTAA
7829646 ATATA
1 ATATA
7829651 AAAATATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (21 bp):
ATATATTTTAACATTAACTAA
Found at i:7829890 original size:25 final size:23
Alignment explanation
Indices: 7829869--7829935 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 23
7829859 ATTTTTAAAT
7829869 TAAGTTAATAAAAAAATATTTAA
1 TAAGTTAATAAAAAAATATTTAA
* *
7829892 TAATTTAATATAAAAATATTTTAA
1 TAAGTTAATAAAAAAATA-TTTAA
7829916 -AAGTTAATATATAAAAATAT
1 TAAGTTAATA-A-AAAAATAT
7829936 ATGAATTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 24 0.65
24 6 0.16
25 7 0.19
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (23 bp):
TAAGTTAATAAAAAAATATTTAA
Found at i:7830137 original size:15 final size:15
Alignment explanation
Indices: 7830117--7830198 Score: 121
Period size: 15 Copynumber: 5.5 Consensus size: 15
7830107 TTCCAGAAAA
7830117 TGAATTACTGGAATT
1 TGAATTACTGGAATT
7830132 TGAATTACTGGAATT
1 TGAATTACTGGAATT
**
7830147 TGAATTACTGGAAAA
1 TGAATTACTGGAATT
7830162 TGAATTACTGGAATT
1 TGAATTACTGGAATT
**
7830177 TGAATT-CTGGAAAA
1 TGAATTACTGGAATT
7830191 TGAATTAC
1 TGAATTAC
7830199 ATTTCTGTAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
14 12 0.20
15 48 0.80
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (15 bp):
TGAATTACTGGAATT
Found at i:7830151 original size:30 final size:30
Alignment explanation
Indices: 7830117--7830198 Score: 139
Period size: 30 Copynumber: 2.8 Consensus size: 30
7830107 TTCCAGAAAA
**
7830117 TGAATTACTGGAATTTGAATTACTGGAATT
1 TGAATTACTGGAAAATGAATTACTGGAATT
7830147 TGAATTACTGGAAAATGAATTACTGGAATT
1 TGAATTACTGGAAAATGAATTACTGGAATT
7830177 TGAATT-CTGGAAAATGAATTAC
1 TGAATTACTGGAAAATGAATTAC
7830199 ATTTCTGTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 16 0.32
30 34 0.68
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (30 bp):
TGAATTACTGGAAAATGAATTACTGGAATT
Found at i:7830176 original size:45 final size:44
Alignment explanation
Indices: 7830112--7830198 Score: 147
Period size: 45 Copynumber: 2.0 Consensus size: 44
7830102 TGGTTTTCCA
**
7830112 GAAAATGAATTACTGGAATTTGAATTACTGGAATTTGAATTACTG
1 GAAAATGAATTACTGGAATTTGAATT-CTGGAAAATGAATTACTG
7830157 GAAAATGAATTACTGGAATTTGAATTCTGGAAAATGAATTAC
1 GAAAATGAATTACTGGAATTTGAATTCTGGAAAATGAATTAC
7830199 ATTTCTGTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 14 0.35
45 26 0.65
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (44 bp):
GAAAATGAATTACTGGAATTTGAATTCTGGAAAATGAATTACTG
Found at i:7830204 original size:20 final size:20
Alignment explanation
Indices: 7830181--7830250 Score: 122
Period size: 20 Copynumber: 3.5 Consensus size: 20
7830171 GGAATTTGAA
7830181 TTCTGGAAAATGAATTACAT
1 TTCTGGAAAATGAATTACAT
*
7830201 TTCTGTAAAATGAATTACAT
1 TTCTGGAAAATGAATTACAT
*
7830221 TTCTGGATAATGAATTACAT
1 TTCTGGAAAATGAATTACAT
7830241 TTCTGGAAAA
1 TTCTGGAAAA
7830251 CATCTGGAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (20 bp):
TTCTGGAAAATGAATTACAT
Found at i:7830450 original size:29 final size:29
Alignment explanation
Indices: 7830415--7830518 Score: 101
Period size: 29 Copynumber: 3.6 Consensus size: 29
7830405 CTTTACTAAA
* *
7830415 ATATTATTGAAATATATAAATAA-TATTAT
1 ATATTATT-AAATATAAAAAAAATTATTAT
7830444 -TCATTATTAAATATAAAAAAAATTATTAT
1 AT-ATTATTAAATATAAAAAAAATTATTAT
7830473 ATATTATTAAA-ATAAAAATATAA-TATCT-T
1 ATATTATTAAATATAAAAA-A-AATTAT-TAT
7830502 ATATTATTATAATATAA
1 ATATTATTA-AATATAA
7830519 TTGGTTATTT
Statistics
Matches: 65, Mismatches: 2, Indels: 14
0.80 0.02 0.17
Matches are distributed among these distances:
28 20 0.31
29 35 0.54
30 6 0.09
31 4 0.06
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (29 bp):
ATATTATTAAATATAAAAAAAATTATTAT
Found at i:7830460 original size:26 final size:26
Alignment explanation
Indices: 7830428--7830478 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7830418 TTATTGAAAT
* *
7830428 ATATAAATAATATTATTCAT-TATTAA
1 ATATAAAAAAAATTATT-ATATATTAA
7830454 ATATAAAAAAAATTATTATATATTA
1 ATATAAAAAAAATTATTATATATTA
7830479 TTAAAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
ATATAAAAAAAATTATTATATATTAA
Found at i:7830498 original size:24 final size:23
Alignment explanation
Indices: 7830457--7830503 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
7830447 TTATTAAATA
* *
7830457 TAAAAAAAATTATTATATATTAT
1 TAAAAAAAAATATAATATATTAT
*
7830480 TAAAATAAAAATATAATATCTTAT
1 TAAAA-AAAAATATAATATATTAT
7830504 ATTATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAAAAAAAATATAATATATTAT
Found at i:7830556 original size:22 final size:23
Alignment explanation
Indices: 7830531--7830574 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7830521 GGTTATTTTA
7830531 TATAATATTAAAAATA-TAATAT
1 TATAATATTAAAAATATTAATAT
* *
7830553 TATATTATTATAAATATTAATA
1 TATAATATTAAAAATATTAATA
7830575 AATATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TATAATATTAAAAATATTAATAT
Found at i:7830575 original size:26 final size:24
Alignment explanation
Indices: 7830546--7830608 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 24
7830536 TATTAAAAAT
7830546 ATAATATTATATTATTATAA-ATATTA
1 ATAATA-TATATT-TTA-AATATATTA
*
7830572 ATAA-ATATATTTTAAATATTTTA
1 ATAATATATATTTTAAATATATTA
7830595 ATAAT-TAATATTTT
1 ATAATAT-ATATTTT
7830609 GATGAAAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 2 0.06
23 13 0.39
24 13 0.39
25 1 0.03
26 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
ATAATATATATTTTAAATATATTA
Found at i:7830579 original size:22 final size:22
Alignment explanation
Indices: 7830535--7830591 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
7830525 ATTTTATATA
* *
7830535 ATATTAAAAATA-TAATATTAT
1 ATATTATAAATATTAATATAAT
7830556 ATTATTATAAATATTAATA-AAT
1 A-TATTATAAATATTAATATAAT
*
7830578 ATATTTTAAATATT
1 ATATTATAAATATT
7830592 TTAATAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 13 0.42
22 13 0.42
23 5 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATATTATAAATATTAATATAAT
Found at i:7830590 original size:52 final size:51
Alignment explanation
Indices: 7830471--7830591 Score: 124
Period size: 54 Copynumber: 2.3 Consensus size: 51
7830461 AAAAATTATT
**
7830471 ATATATTATTAAA-A-TAAAAATATAATATCTTATATTATTATAATATAATTG
1 ATATATT-TTAAATATTAAAAATATAATA-CTTATATTATTATAATATAATAA
*
7830522 GT-TATTTTATATAATATTAAAAATATAATA-TTATATTATTATAAATATTAATAA
1 ATATA-TTT-TA-AATATTAAAAATATAATACTTATATTATTAT-AATA-TAATAA
7830576 ATATATTTTAAATATT
1 ATATATTTTAAATATT
7830592 TTAATAATTA
Statistics
Matches: 58, Mismatches: 4, Indels: 15
0.75 0.05 0.19
Matches are distributed among these distances:
50 3 0.05
51 5 0.09
52 20 0.34
53 7 0.12
54 21 0.36
55 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (51 bp):
ATATATTTTAAATATTAAAAATATAATACTTATATTATTATAATATAATAA
Found at i:7830839 original size:42 final size:42
Alignment explanation
Indices: 7830780--7830899 Score: 222
Period size: 42 Copynumber: 2.9 Consensus size: 42
7830770 ATGAATTACA
*
7830780 TTCCGGAAAACGAATTACGTGAAACAAACACGGGAAAACGTT
1 TTCCGGAAAACGAATTACGTGAAACAAACACGGGAAAACATT
*
7830822 TTCCGGAAAACGAATTACGTGGAACAAACACGGGAAAACATT
1 TTCCGGAAAACGAATTACGTGAAACAAACACGGGAAAACATT
7830864 TTCCGGAAAACGAATTACGTGAAACAAACACGGGAA
1 TTCCGGAAAACGAATTACGTGAAACAAACACGGGAA
7830900 TTCGGGGAAA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (42 bp):
TTCCGGAAAACGAATTACGTGAAACAAACACGGGAAAACATT
Found at i:7831260 original size:31 final size:31
Alignment explanation
Indices: 7831224--7831282 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
7831214 ACCACATCTC
* * * *
7831224 AATTAAATATAAATAAAATTGATCATATTTT
1 AATTAAATAAAAACAAAAGTGAACATATTTT
7831255 AATTAAATAAAAACAAAAGTGAACATAT
1 AATTAAATAAAAACAAAAGTGAACATAT
7831283 ATTATATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (31 bp):
AATTAAATAAAAACAAAAGTGAACATATTTT
Found at i:7831965 original size:16 final size:15
Alignment explanation
Indices: 7831935--7831996 Score: 99
Period size: 16 Copynumber: 4.1 Consensus size: 15
7831925 ATAAAATATT
7831935 AATTATTTA-TTTTA
1 AATTATTTATTTTTA
7831949 AATTATTTAATTTTTA
1 AATTATTT-ATTTTTA
7831965 AATTATTTATTTTTTA
1 AATTATTTA-TTTTTA
7831981 AATTATTTATTTTTA
1 AATTATTTATTTTTA
7831996 A
1 A
7831997 GCCTATAAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.18
15 9 0.20
16 28 0.62
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
AATTATTTATTTTTA
Found at i:7831973 original size:9 final size:9
Alignment explanation
Indices: 7831945--7831989 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
7831935 AATTATTTAT
7831945 TTTAAATTA
1 TTTAAATTA
7831954 TTT-AATT-
1 TTTAAATTA
7831961 TTTAAATTA
1 TTTAAATTA
*
7831970 TTT--ATTT
1 TTTAAATTA
7831977 TTTAAATTA
1 TTTAAATTA
7831986 TTTA
1 TTTA
7831990 TTTTTAAGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
7 9 0.30
8 8 0.27
9 13 0.43
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTAAATTA
Found at i:7832598 original size:38 final size:38
Alignment explanation
Indices: 7832526--7832598 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
7832516 TTGATAGAAA
*
7832526 TTTTGAAAAGTGATTATTAAAAGTACAGTATAAAATAT
1 TTTTGAAAAGTGATTATTAAAAGTACAATATAAAATAT
* * *
7832564 TTTTTAAAAGTG-TTATTTAAAAGTCCAATTTAAAA
1 TTTTGAAAAGTGATTA-TTAAAAGTACAATATAAAA
7832599 ATTAACTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 3 0.10
38 27 0.90
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (38 bp):
TTTTGAAAAGTGATTATTAAAAGTACAATATAAAATAT
Found at i:7836308 original size:8 final size:8
Alignment explanation
Indices: 7836295--7836319 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7836285 CGGCGGAATA
7836295 GGTTTTGG
1 GGTTTTGG
7836303 GGTTTTGG
1 GGTTTTGG
7836311 GGTTTTGG
1 GGTTTTGG
7836319 G
1 G
7836320 TGTTCTTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (8 bp):
GGTTTTGG
Found at i:7836423 original size:20 final size:21
Alignment explanation
Indices: 7836369--7836431 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
7836359 GATTCCCCTG
7836369 TGGGGGGAATCGGTTCCCCTTCAA
1 TGGGGGG-ATCGGTT-CCC-TCAA
* *
7836393 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
7836413 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
7836432 TGCACCAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:7840437 original size:20 final size:21
Alignment explanation
Indices: 7840383--7840445 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
7840373 GATTCCCCTG
7840383 TGGGGGGAATCGGTTCCCCTTCAA
1 TGGGGGG-ATCGGTT-CCC-TCAA
* *
7840407 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
7840427 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
7840446 TGCACCAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:7860535 original size:16 final size:17
Alignment explanation
Indices: 7860509--7860546 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
7860499 GTTTAAGTTG
7860509 ATATATTATATATCATA
1 ATATATTATATATCATA
7860526 ATAT-TTATATATCATA
1 ATATATTATATATCATA
*
7860542 GTATA
1 ATATA
7860547 ATAAGTGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (17 bp):
ATATATTATATATCATA
Found at i:7862386 original size:15 final size:16
Alignment explanation
Indices: 7862366--7862396 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7862356 CAAAAGAACT
7862366 TTAAATTA-TATAAAA
1 TTAAATTAGTATAAAA
7862381 TTAAATTAGTATAAAA
1 TTAAATTAGTATAAAA
7862397 ACAAGATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
TTAAATTAGTATAAAA
Found at i:7872320 original size:2 final size:2
Alignment explanation
Indices: 7872313--7872364 Score: 83
Period size: 2 Copynumber: 27.5 Consensus size: 2
7872303 TAAGTAAATC
7872313 AT AT AT AT AT AT -T AT AT AT AT -T AT AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7872352 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
7872365 CACAAAAGTA
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
1 3 0.06
2 44 0.94
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7872364 original size:14 final size:14
Alignment explanation
Indices: 7872313--7872364 Score: 83
Period size: 13 Copynumber: 3.9 Consensus size: 14
7872303 TAAGTAAATC
7872313 ATATATATATAT-T
1 ATATATATATATAT
7872326 ATATATAT-TATAT
1 ATATATATATATAT
7872339 -TATATATATATAT
1 ATATATATATATAT
7872352 ATATATATATATA
1 ATATATATATATA
7872365 CACAAAAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.28
13 14 0.39
14 12 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATATATATATATAT
Found at i:7873441 original size:23 final size:24
Alignment explanation
Indices: 7873396--7873443 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7873386 TGTTCGTTTC
* * *
7873396 TATTTAATTTTACGTTTATAATAT
1 TATTTAAGTTTACATTTAAAATAT
7873420 TATTTAAGTTTA-ATTTAAAATAT
1 TATTTAAGTTTACATTTAAAATAT
7873443 T
1 T
7873444 TTCTATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (24 bp):
TATTTAAGTTTACATTTAAAATAT
Found at i:7873703 original size:21 final size:20
Alignment explanation
Indices: 7873568--7873723 Score: 82
Period size: 20 Copynumber: 7.8 Consensus size: 20
7873558 TGCCAAATGA
**
7873568 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
7873587 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* * ** *
7873607 CAGAATCACAAATCG-TTTC
1 CAAAATCGCAACGCGATTTT
*
7873626 CAAAATCGCAACGCGATCTT
1 CAAAATCGCAACGCGATTTT
* * * *
7873646 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
7873667 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
7873687 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
7873708 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
7873724 ACACATAAAT
Statistics
Matches: 101, Mismatches: 32, Indels: 7
0.72 0.23 0.05
Matches are distributed among these distances:
19 28 0.28
20 43 0.43
21 30 0.30
ACGTcount: A:0.39, C:0.26, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:7873822 original size:39 final size:40
Alignment explanation
Indices: 7873729--7873952 Score: 259
Period size: 39 Copynumber: 5.8 Consensus size: 40
7873719 CGCGAACACA
* * *
7873729 TAAATCGCAACGCGTATCCGTAAATCGCAACG-TGTATCC-
1 TAAATCGCAACGAGAATCCGTAAATCGCAACGAT-AATCCG
* * *
7873768 T--ATCGCAACGCGTATCCGTAAATCGCATGCG-T-ATCCG
1 TAAATCGCAACGAGAATCCGTAAATCGCA-ACGATAATCCG
* * *
7873805 TATATCGCAACGCGTATCC-TAAATCGCAACGATAATCCG
1 TAAATCGCAACGAGAATCCGTAAATCGCAACGATAATCCG
7873844 TAAATCGCAACGAGAATCCGTAAATCGCAACGATAATCCG
1 TAAATCGCAACGAGAATCCGTAAATCGCAACGATAATCCG
*
7873884 TAAATCGCAACGAGAATCTGT-AATCGCAACGATAATCCG
1 TAAATCGCAACGAGAATCCGTAAATCGCAACGATAATCCG
* *
7873923 T-AATCGCAACGAGAATCTGTAAATCACAAC
1 TAAATCGCAACGAGAATCCGTAAATCGCAAC
7873953 ACTGAAATTT
Statistics
Matches: 170, Mismatches: 7, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
36 4 0.02
37 29 0.17
38 32 0.19
39 65 0.38
40 40 0.24
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.21
Consensus pattern (40 bp):
TAAATCGCAACGAGAATCCGTAAATCGCAACGATAATCCG
Found at i:7873910 original size:19 final size:20
Alignment explanation
Indices: 7873690--7873952 Score: 245
Period size: 20 Copynumber: 13.5 Consensus size: 20
7873680 CGATTTTCCA
* ** *
7873690 AAATCGCAACGCGAATATGA
1 AAATCGCAACGAGAATCCGT
* *
7873710 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGAGAATC-CGT
* *
7873730 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGAGAATCCGT
* *
7873750 AAATCGCAACGTGTATCC-T
1 AAATCGCAACGAGAATCCGT
* *
7873769 --ATCGCAACGCGTATCCGT
1 AAATCGCAACGAGAATCCGT
* * *
7873787 AAATCGC-ATGCGTATCCGT
1 AAATCGCAACGAGAATCCGT
* * *
7873806 ATATCGCAACGCGTATCC-T
1 AAATCGCAACGAGAATCCGT
*
7873825 AAATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGT
7873845 AAATCGCAACGAGAATCCGT
1 AAATCGCAACGAGAATCCGT
*
7873865 AAATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGT
*
7873885 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGAGAATCCGT
*
7873905 -AATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGT
*
7873924 -AATCGCAACGAGAATCTGT
1 AAATCGCAACGAGAATCCGT
*
7873943 AAATCACAAC
1 AAATCGCAAC
7873953 ACTGAAATTT
Statistics
Matches: 211, Mismatches: 24, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
17 15 0.07
18 1 0.00
19 67 0.32
20 127 0.60
21 1 0.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGAGAATCCGT
Found at i:7877156 original size:19 final size:19
Alignment explanation
Indices: 7877100--7877286 Score: 201
Period size: 19 Copynumber: 10.7 Consensus size: 19
7877090 GCAACGAGAG
7877100 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7877119 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
7877133 AATCGCAATGCGGAAATG-A
1 AATCGCAATGC-GAAATGAA
7877152 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7877171 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7877190 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
7877204 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7877223 AATCGCAATGCG-AATGAA
1 AATCGCAATGCGAAATGAA
*
7877241 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
*
7877255 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
7877274 AATCGCATTGCGA
1 AATCGCAATGCGA
7877287 TTCTCCCGTT
Statistics
Matches: 143, Mismatches: 8, Indels: 34
0.77 0.04 0.18
Matches are distributed among these distances:
14 32 0.22
15 2 0.01
16 7 0.05
17 3 0.02
18 22 0.15
19 74 0.52
20 3 0.02
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:7877159 original size:52 final size:49
Alignment explanation
Indices: 7877086--7877280 Score: 259
Period size: 52 Copynumber: 3.8 Consensus size: 49
7877076 CGGAAATTAC
*
7877086 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAA-C-ATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAAGCAATGAA
*
7877133 AATCGCAATGCGGAAATGAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--C-GAGA-G-AATCGCAATGCGAAATGAAAATCGCAA-GC--AATGAA
7877190 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA-GC-AATGAA
*
7877241 AATCGCAACGAGAGAATCGCAATGCGAAATTAAAATCGCA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
7877281 TTGCGATTCT
Statistics
Matches: 133, Mismatches: 5, Indels: 16
0.86 0.03 0.10
Matches are distributed among these distances:
47 8 0.06
49 1 0.01
50 3 0.02
51 46 0.35
52 56 0.42
53 1 0.01
54 4 0.03
55 1 0.01
57 13 0.10
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (49 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAAGCAATGAA
Found at i:7877184 original size:71 final size:70
Alignment explanation
Indices: 7877100--7877248 Score: 239
Period size: 71 Copynumber: 2.1 Consensus size: 70
7877090 GCAACGAGAG
7877100 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATG-AAATCGCAATGC
1 AATCGCAATGCGAAATGAAAATCCCAACGA-GAAAATCGCAATGC-GAAATGAAAATCGCAATGC
7877163 GAAATGAA
64 G-AATGAA
* *
7877171 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCCCAACGAGAAAATCGCAATGCGAAATGAAAATCGCAATGCGA
7877236 ATGAA
66 ATGAA
7877241 AATCGCAA
1 AATCGCAA
7877249 CGAGAGAATC
Statistics
Matches: 74, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
70 20 0.27
71 53 0.72
72 1 0.01
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (70 bp):
AATCGCAATGCGAAATGAAAATCCCAACGAGAAAATCGCAATGCGAAATGAAAATCGCAATGCGA
ATGAA
Found at i:7877227 original size:33 final size:34
Alignment explanation
Indices: 7877086--7877248 Score: 199
Period size: 33 Copynumber: 4.7 Consensus size: 34
7877076 CGGAAATTAC
*
7877086 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
*
7877119 AATCCCAAC-ATGAAAATCGCAATGCGGAAATG-A
1 AATCGCAACGATGAAAATCGCAATGC-GAAATGAA
7877152 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--CG--ATGAAAATCGCAATGCGAAATGAA
*
7877190 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
7877223 AATCGCAATGCGAATGAAAATCGCAA
1 AATCGCAA--CG-ATGAAAATCGCAA
7877249 CGAGAGAATC
Statistics
Matches: 113, Mismatches: 5, Indels: 20
0.82 0.04 0.14
Matches are distributed among these distances:
32 1 0.01
33 58 0.51
34 7 0.06
35 3 0.03
36 3 0.03
37 16 0.14
38 25 0.22
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.14
Consensus pattern (34 bp):
AATCGCAACGATGAAAATCGCAATGCGAAATGAA
Found at i:7877335 original size:19 final size:19
Alignment explanation
Indices: 7877295--7877392 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
7877285 GATTCTCCCG
7877295 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
7877315 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
7877334 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
7877348 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
7877367 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
7877386 TTGCGAT
1 TTGCGAT
7877393 AGTCAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:7877389 original size:52 final size:53
Alignment explanation
Indices: 7877276--7877392 Score: 218
Period size: 53 Copynumber: 2.2 Consensus size: 53
7877266 GAAATTAAAA
7877276 TCGCATTGCGATTCTCCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
*
7877329 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
7877381 TCGCATTGCGAT
1 TCGCATTGCGAT
7877393 AGTCAATTTT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 30 0.48
53 33 0.52
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:7877518 original size:14 final size:14
Alignment explanation
Indices: 7877499--7877535 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
7877489 CATCAATTAC
7877499 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
7877513 ACAAATCATCTTTT
1 ACAAATCAACTTTT
7877527 ACAAATCAA
1 ACAAATCAA
7877536 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:7879489 original size:19 final size:19
Alignment explanation
Indices: 7879449--7879513 Score: 78
Period size: 18 Copynumber: 3.4 Consensus size: 19
7879439 TAGTTTACTT
* *
7879449 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
7879469 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
7879488 TCGCAACGCG-AATGAAAA
1 TCGCAACGCGAAACCAAAA
7879506 TCGCAACG
1 TCGCAACG
7879514 ACAGAATCGC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.34
19 14 0.34
20 13 0.32
ACGTcount: A:0.45, C:0.28, G:0.17, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:7879523 original size:14 final size:14
Alignment explanation
Indices: 7879504--7879560 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
7879494 CGCGAATGAA
*
7879504 AATCGCAACGACAG
1 AATCGCAACGAAAG
7879518 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
7879535 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
7879551 AATCGCAACG
1 AATCGCAACG
7879561 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:7879540 original size:33 final size:33
Alignment explanation
Indices: 7879486--7879577 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
7879476 GCGAAACCAA
*
7879486 AATCGCAACGCG-AATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
7879518 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
7879551 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
7879578 TGCGATTTTG
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 11 0.20
33 45 0.80
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:7879542 original size:19 final size:19
Alignment explanation
Indices: 7879449--7879582 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
7879439 TAGTTTACTT
* *
7879449 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
7879469 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
7879488 TCGCAACGCG-AATGAAAA
1 TCGCAACGCGAAATGAAAA
*
7879506 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
7879520 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
7879539 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
7879553 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
7879572 TCGCAATGCGA
1 TCGCAACGCGA
7879583 TTTTGGTTTC
Statistics
Matches: 95, Mismatches: 8, Indels: 23
0.75 0.06 0.18
Matches are distributed among these distances:
14 16 0.17
16 13 0.14
17 8 0.08
18 12 0.13
19 34 0.36
20 12 0.13
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:7879600 original size:19 final size:19
Alignment explanation
Indices: 7879578--7879706 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
7879568 AAAATCGCAA
7879578 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
7879597 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
7879611 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
7879630 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
7879644 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
7879663 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
7879682 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
7879702 TGCGA
1 TGCGA
7879707 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:7879620 original size:33 final size:33
Alignment explanation
Indices: 7879578--7879669 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
7879568 AAAATCGCAA
7879578 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
7879611 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
7879644 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
7879670 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:7879870 original size:93 final size:93
Alignment explanation
Indices: 7879754--7880313 Score: 1072
Period size: 93 Copynumber: 6.1 Consensus size: 93
7879744 ATGGATTGCA
7879754 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
7879818 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
*
7879846 TCACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
7879911 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7879939 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
7880004 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7880032 TTACTTTCAACCAAAAGACAAAAC-AAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
7880096 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7880124 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
7880189 TAGCATAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7880217 TTACTTTCAACCAAAAGAC-AAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
7880281 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
7880309 TTACT
1 TTACT
7880314 AAGCAATCTA
Statistics
Matches: 461, Mismatches: 5, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
92 171 0.37
93 290 0.63
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:7880168 original size:185 final size:186
Alignment explanation
Indices: 7879754--7880313 Score: 1072
Period size: 185 Copynumber: 3.0 Consensus size: 186
7879744 ATGGATTGCA
7879754 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
7879818 TAGCAGAATTGGCAGCAACCGAACAAATTCACTTTCAACCAAAAGACAAAACAAAGACAAATACT
66 TAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACT
7879883 ATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
131 ATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
7879939 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
7880004 TAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAAC-AAGACAAATACT
66 TAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACT
7880068 ATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
131 ATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
7880124 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
7880189 TAGCATAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGAC-AAACAAAGACAAATACT
66 TAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACT
*
7880253 ATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAAT
131 ATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
7880309 TTACT
1 TTACT
7880314 AAGCAATCTA
Statistics
Matches: 370, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
184 4 0.01
185 255 0.69
186 111 0.30
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACT
ATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:7882071 original size:32 final size:32
Alignment explanation
Indices: 7882003--7882114 Score: 183
Period size: 32 Copynumber: 3.5 Consensus size: 32
7881993 TCTTTTGGTT
7882003 GAAATGAAAATCGCAAC-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACAGAGAATCGCAACGC
*
7882034 GAAATGAAAACCGCAACTAGAGAATCGC-ACGC
1 GAAATGAAAATCGCAAC-AGAGAATCGCAACGC
7882066 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAAC-AGAGAATCGCAACGC
7882099 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
7882115 TGCGATTTTG
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
31 16 0.21
32 30 0.40
33 29 0.39
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.10
Consensus pattern (32 bp):
GAAATGAAAATCGCAACAGAGAATCGCAACGC
Done.