Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10075380
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 42
Found at i:7882163 original size:33 final size:33
Alignment explanation
Indices: 7882115--7882195 Score: 126
Period size: 33 Copynumber: 2.5 Consensus size: 33
7882105 AAAATCGCAA
**
7882115 TGCGATTTTGGTTTCGCGTTGCAATTCTCTAGT
1 TGCGATTTTCATTTCGCGTTGCAATTCTCTAGT
* *
7882148 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCAATTCTCTAGT
7882181 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
7882196 TCTCGTTGCG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCAATTCTCTAGT
Found at i:7882228 original size:41 final size:41
Alignment explanation
Indices: 7882171--7882248 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
7882161 TCGCGTTGCG
*
7882171 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
7882212 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
7882249 TCTTCTGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
Found at i:7882233 original size:20 final size:21
Alignment explanation
Indices: 7882172--7882247 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
7882162 CGCGTTGCGA
7882172 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
7882193 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
7882213 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
7882234 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
7882248 CTCTTCTGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:7882369 original size:33 final size:33
Alignment explanation
Indices: 7882327--7882397 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
7882317 AATACTAACT
*
7882327 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
7882360 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
7882393 TGAAA
1 TGAAA
7882398 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:7882905 original size:20 final size:20
Alignment explanation
Indices: 7882778--7882892 Score: 160
Period size: 20 Copynumber: 5.7 Consensus size: 20
7882768 CTTTAAATAT
7882778 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
7882798 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
7882820 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
7882839 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
*
7882859 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
7882879 CGCGTTGCGATTTA
1 CGCGTTGCGATTTA
7882893 TGTGTTCGCG
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.78
21 14 0.17
22 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:7882905 original size:40 final size:40
Alignment explanation
Indices: 7882777--7882931 Score: 177
Period size: 40 Copynumber: 3.9 Consensus size: 40
7882767 GCTTTAAATA
*
7882777 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTGT
** * *
7882818 TATCGTTGCGATTTACGGATACGCGTTGCGATATACG-GAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTG-T
* *
7882858 ACACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
* * ** *
7882898 TCGCGTTGTGATTTTCATATTCGCGTTGCGATTT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTT
7882932 TGGAAAATCG
Statistics
Matches: 95, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
40 65 0.68
41 30 0.32
ACGTcount: A:0.18, C:0.17, G:0.26, T:0.38
Consensus pattern (40 bp):
TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
Found at i:7882948 original size:21 final size:21
Alignment explanation
Indices: 7882918--7883000 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
7882908 ATTTTCATAT
*
7882918 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
7882939 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
7882960 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
7882981 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
7883001 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:7883049 original size:19 final size:19
Alignment explanation
Indices: 7883021--7883073 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
7883011 ATTCTGGGGA
7883021 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTTATT
*
7883040 TCGTGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTTATT
7883059 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
7883074 GTTGGTCATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.09, C:0.15, G:0.23, T:0.53
Consensus pattern (19 bp):
TCGCGTTGCGATTTTTATT
Found at i:7892541 original size:51 final size:51
Alignment explanation
Indices: 7892370--7893137 Score: 1248
Period size: 51 Copynumber: 14.9 Consensus size: 51
7892360 TCATAAAACG
* * * * ** *
7892370 TGTCTGCTCTCTATTCATTCAGAGAGTATAAGACTTGAACAATCTTTAATAAACG
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGAC-T---CAATCTTCAACGAACT
* * * * ** *
7892425 GGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAAAAATCTTCAATAAACA
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTC----AATCTTCAACGAACT
* * *
7892480 GGTCCGCTCCCTATTCTTTCAGGGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
7892531 AGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
7892582 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAATT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
7892633 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
7892684 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
7892735 TGTCTGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
7892786 TGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
7892837 TGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
7892888 TGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
*
7892939 TGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
7892990 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
7893041 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
7893092 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAAC
1 TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAAC
7893138 AAACGAATTT
Statistics
Matches: 685, Mismatches: 24, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
51 610 0.89
54 1 0.00
55 74 0.11
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (51 bp):
TGTCCGCTCCCTATTCATTCAGAGAGTATAGGACTCAATCTTCAACGAACT
Found at i:7894500 original size:18 final size:18
Alignment explanation
Indices: 7894477--7894577 Score: 54
Period size: 18 Copynumber: 5.7 Consensus size: 18
7894467 TCTTTTTTCA
7894477 TTTTTCTCTTTTC-CTTCC
1 TTTTTCTCTTTTCTCTT-C
*
7894495 TTTTTCCATTTTTTCTCTTC
1 TTTTT-C-TCTTTTCTCTTC
*
7894515 TTTTT-TCTTTTC-GTT-
1 TTTTTCTCTTTTCTCTTC
* *
7894530 TTTTCCATCATTT-T-TTC
1 TTTTTC-TCTTTTCTCTTC
*
7894547 TTTTTTCTCATTTTTTCTTC
1 -TTTTTCTC-TTTTCTCTTC
7894567 -TTTTCTCTTTT
1 TTTTTCTCTTTT
7894578 ATTTCTTCTT
Statistics
Matches: 65, Mismatches: 7, Indels: 23
0.68 0.07 0.24
Matches are distributed among these distances:
15 4 0.06
16 4 0.06
17 17 0.26
18 20 0.31
19 2 0.03
20 15 0.23
21 3 0.05
ACGTcount: A:0.04, C:0.23, G:0.01, T:0.72
Consensus pattern (18 bp):
TTTTTCTCTTTTCTCTTC
Found at i:7894520 original size:12 final size:13
Alignment explanation
Indices: 7894501--7894547 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 13
7894491 TTCCTTTTTC
7894501 CATTTTTTCTCTT
1 CATTTTTTCTCTT
*
7894514 C-TTTTTTCTTTT
1 CATTTTTTCTCTT
* *
7894526 CGTTTTTTC-CAT
1 CATTTTTTCTCTT
7894538 CATTTTTTCT
1 CATTTTTTCT
7894548 TTTTTCTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 20 0.71
13 8 0.29
ACGTcount: A:0.06, C:0.21, G:0.02, T:0.70
Consensus pattern (13 bp):
CATTTTTTCTCTT
Found at i:7894524 original size:27 final size:26
Alignment explanation
Indices: 7894467--7894577 Score: 86
Period size: 27 Copynumber: 4.2 Consensus size: 26
7894457 CTTTTATTTA
* *
7894467 TCTTTTTTCATTTTTCTCTT-TTCCTT
1 TCTTTTTCCATTTTTCTCTTCTT-TTT
*
7894493 CCTTTTTCCATTTTTTCTCTTCTTTTT
1 TCTTTTTCCA-TTTTTCTCTTCTTTTT
** *
7894520 TC-TTTTCGTTTTTTC-CATCATTTTT
1 TCTTTTTCCATTTTTCTCTTC-TTTTT
*
7894545 TCTTTTTTCTCATTTTT-TCTTCTTTTC
1 TC-TTTTTC-CATTTTTCTCTTCTTTTT
7894572 TCTTTT
1 TCTTTT
7894578 ATTTCTTCTT
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
24 3 0.04
25 13 0.19
26 17 0.25
27 24 0.36
28 10 0.15
ACGTcount: A:0.05, C:0.23, G:0.01, T:0.72
Consensus pattern (26 bp):
TCTTTTTCCATTTTTCTCTTCTTTTT
Found at i:7894535 original size:45 final size:44
Alignment explanation
Indices: 7894467--7894577 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 44
7894457 CTTTTATTTA
* *
7894467 TCTTTTTTCATTTTTCTCTTTTCCTTCCTTTTTCCATTTTTTCTC-T
1 TCTTTTTTC--TTTTCTCTTTTCCATCATTTTTCC-TTTTTTCTCAT
* *
7894513 TCTTTTTTCTTTTCGTTTTTTCCATCATTTTTTCTTTTTTCTCAT
1 TCTTTTTTCTTTTC-TCTTTTCCATCATTTTTCCTTTTTTCTCAT
7894558 T-TTTTCTTCTTTTCTCTTTT
1 TCTTTT-TTCTTTTCTCTTTT
7894578 ATTTCTTCTT
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
44 23 0.40
45 25 0.44
46 9 0.16
ACGTcount: A:0.05, C:0.23, G:0.01, T:0.72
Consensus pattern (44 bp):
TCTTTTTTCTTTTCTCTTTTCCATCATTTTTCCTTTTTTCTCAT
Found at i:7894551 original size:20 final size:18
Alignment explanation
Indices: 7894522--7894584 Score: 67
Period size: 17 Copynumber: 3.4 Consensus size: 18
7894512 TTCTTTTTTC
7894522 TTTTCGTTTTTTCCATCATT
1 TTTTC-TTTTTTCC-TCATT
7894542 TTTTCTTTTTT-CTCATT
1 TTTTCTTTTTTCCTCATT
*
7894559 TTTTCTTCTTTT-CTCTTT
1 TTTTCTT-TTTTCCTCATT
7894577 TATTTCTT
1 T-TTTCTT
7894585 CTTCAAGCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
17 12 0.30
18 11 0.28
19 12 0.30
20 5 0.12
ACGTcount: A:0.06, C:0.19, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTCTTTTTTCCTCATT
Found at i:7894582 original size:19 final size:18
Alignment explanation
Indices: 7894537--7894587 Score: 77
Period size: 17 Copynumber: 2.8 Consensus size: 18
7894527 GTTTTTTCCA
7894537 TCATTTTTTCTT-TTTTC
1 TCATTTTTTCTTCTTTTC
7894554 TCATTTTTTCTTCTTTTC
1 TCATTTTTTCTTCTTTTC
*
7894572 TCTTTTATTTCTTCTT
1 TCATTT-TTTCTTCTT
7894588 CAAGCAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 12 0.39
18 10 0.32
19 9 0.29
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.75
Consensus pattern (18 bp):
TCATTTTTTCTTCTTTTC
Found at i:7903106 original size:44 final size:46
Alignment explanation
Indices: 7903042--7903139 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 46
7903032 TTGTTATCCA
*
7903042 CAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGC-TTATT
1 CAAAAAGAAATCCTAACCGCATGATACCTAATTCGCATGCATTATT
* *
7903087 CAAAAATAAA-CCTAACCGCATGATACCTAGTTCGCATGCATTTATT
1 CAAAAAGAAATCCTAACCGCATGATACCTAATTCGCATGCA-TTATT
7903133 CGAAAAA
1 C-AAAAA
7903140 ACGAAAATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
44 27 0.57
45 9 0.19
46 6 0.13
47 5 0.11
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (46 bp):
CAAAAAGAAATCCTAACCGCATGATACCTAATTCGCATGCATTATT
Found at i:7915877 original size:23 final size:23
Alignment explanation
Indices: 7915820--7915890 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
7915810 ACACTTTACA
*
7915820 ATAAACCATTACCTATTACA-TAT
1 ATAAACGA-TACCTATTACATTAT
7915843 ATAAACGATACCTATTACATTAT
1 ATAAACGATACCTATTACATTAT
** * *
7915866 ATAAGGGCTACCTATTACATCAT
1 ATAAACGATACCTATTACATTAT
7915889 AT
1 AT
7915891 GTTTACCTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
22 11 0.26
23 31 0.74
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.34
Consensus pattern (23 bp):
ATAAACGATACCTATTACATTAT
Found at i:7916273 original size:21 final size:20
Alignment explanation
Indices: 7916243--7916296 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
7916233 GATAGACACT
*
7916243 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
7916264 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
7916287 TTACATTATA
1 TTACATTATA
7916297 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:7916284 original size:23 final size:23
Alignment explanation
Indices: 7916258--7916320 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7916248 ATATAACCAT
7916258 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
7916281 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
7916304 TACCTATTACATCATAT
1 TACCTATTACATTATAT
7916321 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:7916453 original size:429 final size:430
Alignment explanation
Indices: 7915558--7916922 Score: 2628
Period size: 429 Copynumber: 3.2 Consensus size: 430
7915548 GGATCGATAC
7915558 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
7915623 ATTTGATTGTTTTGATATTTTAT-AAA-A-TTTTAGAATTTTTAATTTAATAAT-A-ATATACCG
66 ATTTGATTGTTTTGATATTTTATAAAATATTTTTAGAATTTTTAATTTAATAATAATATATACCG
7915683 TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC-AA
131 TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
7915747 AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTAT-AAAAGGATAGA
196 AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGA
7915811 CACTTTACAATA-AACCATTACCTATTACA-TATATAAACGATACCTATTACATTATATAAGGGC
261 CACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGC
7915874 TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
326 TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
7915939 ATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 ATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
7915979 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
7916044 ATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATACC
66 ATTTGATTGTTTTGATATTTTATAAAATATT-TTTAGAATTTTTAATTTAATAATAATATATACC
7916109 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
130 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
7916174 AAGATAACCTTAAATT-ATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
195 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
7916238 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
260 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
7916303 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTAT-AAAAGGATC
325 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
7916367 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
390 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
7916408 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCAC-AAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
7916472 ATTTGATTGTTTTGATATTTTATAAAATATTTTTAGAATTTTTAATTTAATAATAATATATACCG
66 ATTTGATTGTTTTGATATTTTATAAAATATTTTTAGAATTTTTAATTTAATAATAATATATACCG
7916537 TAAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 T-AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
7916602 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
195 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
7916667 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
260 ACACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
7916732 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
325 CTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
7916797 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
390 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
7916838 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
7916903 ATTTGATTGTTTTGATATTT
66 ATTTGATTGTTTTGATATTT
7916923 CATTTCCACC
Statistics
Matches: 930, Mismatches: 0, Indels: 18
0.98 0.00 0.02
Matches are distributed among these distances:
421 88 0.09
422 3 0.00
423 1 0.00
424 1 0.00
425 23 0.02
426 1 0.00
427 142 0.15
428 157 0.17
429 292 0.31
430 195 0.21
431 27 0.03
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.40
Consensus pattern (430 bp):
TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
ATTTGATTGTTTTGATATTTTATAAAATATTTTTAGAATTTTTAATTTAATAATAATATATACCG
TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAA
AGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGA
CACTTTACAATATAACCATTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGC
TACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCG
ATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
Found at i:7916702 original size:21 final size:20
Alignment explanation
Indices: 7916672--7916725 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
7916662 GATAGACACT
*
7916672 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
7916693 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
7916716 TTACATTATA
1 TTACATTATA
7916726 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:7916713 original size:23 final size:23
Alignment explanation
Indices: 7916687--7916749 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7916677 ATATAACCAT
7916687 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
7916710 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
7916733 TACCTATTACATCATAT
1 TACCTATTACATTATAT
7916750 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:7917207 original size:198 final size:199
Alignment explanation
Indices: 7916951--7917923 Score: 1655
Period size: 198 Copynumber: 4.9 Consensus size: 199
7916941 TGATTTAATA
*
7916951 ATTCTCTCATAAAACCGGTATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* * *
7917016 TTGGGTTCGATGATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGATTCACCTC
66 TTGGGTTCGATGATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTT
***
7917081 G-TAAAAATTCATTCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAG
131 GTTTTTAATTCATTCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAG
7917145 ACTT
196 ACTT
7917149 ATTCTCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
*
7917214 TTGGGTTCGATGATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTT
66 TTGGGTTCGATGATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTT
7917279 GTTTTTAATTCATTCTGGGAAAAAAAA-ATCGACACAAAC--TATTAGTGTCGACACATTATTTA
131 GTTTTTAATTCATTCT-GGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTA
7917341 GACTT
195 GACTT
7917346 ATTCTCTCATAAAACCGGTAT-A--GTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
*
7917408 TT-GGTTCGATGATTTTGGGATCGACACTTTTTTTATATGGATCGACACTTTA-TGGTGCACCTT
66 TTGGGTTCGATGATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTT
*
7917471 GTTTTTAATTCATTCTGGGAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAG
131 GTTTTTAATTCATTCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAG
7917536 ACTT
196 ACTT
*
7917540 ATTCTCTCAT-AACCCGGTATAATTGTACCGGTTAGATTGAAAAATTACATTATTACATTATACT
1 ATTCTCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACA-TATTACATTATACT
*
7917604 TTTGGGTTCGATGATTTTGGGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACC
65 TTTGGGTTCGATGATTTTGGGATCGACAC-TTTTTATATATGGATCGACACTTTATTGGTGCACC
*
7917669 TTGTTTTTAATTCATTCTGGGAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTT
129 TTGTTTTTAATTCATTCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTT
7917734 AGACTT
194 AGACTT
*
7917740 ATTCTCTCATAAAACCGGTATAATTGTACCGGTTAGATTAAAAAATTACATATTAC-TTATACTT
1 ATTCTCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
*
7917804 TTGGGTTCGATGATTTTGGGATCGACACTTTTTTATATATGGATCGACACTTTATTGATGCACCT
66 TTGGGTTCGATGATTTTGGGATCGACAC-TTTTTATATATGGATCGACACTTTATTGGTGCACCT
*** *
7917869 TG-TAAAAATTCATTCTGGAAAAAAAATATCGACACAAACTATATTAGTATCGACA
130 TGTTTTTAATTCATTCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACA
7917924 TGACCCTTAA
Statistics
Matches: 739, Mismatches: 23, Indels: 26
0.94 0.03 0.03
Matches are distributed among these distances:
191 9 0.01
192 38 0.05
193 58 0.08
194 81 0.11
196 26 0.04
197 66 0.09
198 199 0.27
199 120 0.16
200 105 0.14
201 37 0.05
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (199 bp):
ATTCTCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
TTGGGTTCGATGATTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATTGGTGCACCTT
GTTTTTAATTCATTCTGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAG
ACTT
Found at i:7918068 original size:19 final size:19
Alignment explanation
Indices: 7918005--7918065 Score: 95
Period size: 19 Copynumber: 3.2 Consensus size: 19
7917995 ATTCACATAA
*
7918005 AAAAATATAAATCGTATAC
1 AAAATTATAAATCGTATAC
7918024 AAAATTATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
7918043 AAAATTATAAAATCTTATAC
1 AAAATTAT-AAATCGTATAC
7918063 AAA
1 AAA
7918066 TTAACTCGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
19 26 0.67
20 13 0.33
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:7919282 original size:19 final size:19
Alignment explanation
Indices: 7919237--7919291 Score: 51
Period size: 19 Copynumber: 2.8 Consensus size: 19
7919227 TCCGGTATCA
*
7919237 TTTTACCGTTTTTATCATT
1 TTTTACCGTGTTTATCATT
*
7919256 TTGATACCG-GTTTATCATAT
1 TT-TTACCGTGTTTATCAT-T
7919276 TTTTACC-TGTTATATC
1 TTTTACCGTGTT-TATC
7919292 GTTGTGGATC
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.20, C:0.16, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTTACCGTGTTTATCATT
Found at i:7919448 original size:20 final size:20
Alignment explanation
Indices: 7919400--7919449 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
7919390 TCGACACTTT
7919400 TAATTTTACCGGTTTTATCA
1 TAATTTTACCGGTTTTATCA
*
7919420 T-TTTGTTACCGGTTTTATCA
1 TAATT-TTACCGGTTTTATCA
7919440 TAATTTTACC
1 TAATTTTACC
7919450 TGGTATATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 2 0.08
20 22 0.85
21 2 0.08
ACGTcount: A:0.22, C:0.16, G:0.10, T:0.52
Consensus pattern (20 bp):
TAATTTTACCGGTTTTATCA
Found at i:7921557 original size:44 final size:44
Alignment explanation
Indices: 7921474--7921559 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
7921464 TTTTAACCAT
* * **
7921474 CATTTTTTAATTATTGTCAATCAAATCATCCAATTATTTAAATG
1 CATTTTTGAATTATTGTCAATCAAACCATCCAACCATTTAAATG
* *
7921518 CATTTTTGAATTCTTGTCAATCAGACCA-CCTAACCATTTAAA
1 CATTTTTGAATTATTGTCAATCAAACCATCC-AACCATTTAAA
7921560 CACGTTCAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.41
Consensus pattern (44 bp):
CATTTTTGAATTATTGTCAATCAAACCATCCAACCATTTAAATG
Found at i:7925466 original size:2 final size:2
Alignment explanation
Indices: 7925459--7925485 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7925449 AAAGGATAAT
7925459 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7925486 GATTATCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7931702 original size:79 final size:79
Alignment explanation
Indices: 7931571--7931717 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 79
7931561 AGAAAATAAG
* * * * *
7931571 TAAAATGTTATAAACTTAAAATAATTTATTATAGATTTAAAGAAATTAAAATTGTTACAAACTTA
1 TAAAATGGTATAAACTTAAAATAACTTATTATAGACTTAAAGAAATTAAAATTATTACAAAATTA
7931636 AATAATCTTTAAAT
66 AATAATCTTTAAAT
* ***
7931650 TAAAATGGTATAAACTT-AAATGAACTTGTTATAGACTTGGGGAAATTAAAATTATTACAAAATT
1 TAAAATGGTATAAACTTAAAAT-AACTTATTATAGACTTAAAGAAATTAAAATTATTACAAAATT
7931714 AAAT
65 AAAT
7931718 GATTTTATTA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 4 0.07
79 54 0.93
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (79 bp):
TAAAATGGTATAAACTTAAAATAACTTATTATAGACTTAAAGAAATTAAAATTATTACAAAATTA
AATAATCTTTAAAT
Found at i:7931798 original size:23 final size:25
Alignment explanation
Indices: 7931771--7931822 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 25
7931761 AATGCAACTT
*
7931771 AAATATTATAGT-ACAAATAAA-AA
1 AAATATAATAGTGACAAATAAATAA
* *
7931794 AAATATAATATTGATAAATAAATAA
1 AAATATAATAGTGACAAATAAATAA
7931819 AAAT
1 AAAT
7931823 TATGTCATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 10 0.42
24 8 0.33
25 6 0.25
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (25 bp):
AAATATAATAGTGACAAATAAATAA
Found at i:7933443 original size:188 final size:185
Alignment explanation
Indices: 7933084--7933645 Score: 656
Period size: 188 Copynumber: 3.0 Consensus size: 185
7933074 GGTTGCATCA
*
7933084 AAAATGTTATCAGAGTTATAA-CTGACGGAGCCTTTTAATTTCCTACGATAAGAAAATAAGTTAA
1 AAAATGTTATCAGAGTT-TAAGCTGATGGAGCCTTTTAATTTCCTACGATAAGAAAATAAGTTAA
* *
7933148 AAACTGAAAATGTTATGAACATATATAACAAATACGATTGCGCCCAATAATGTATTGTTTCAGTA
65 AAACTGAAAATGTTATGAACATATATAATAAATACGATTGCACCCAATAATGTATTGTTTCAGTA
* * * * *
7933213 AGGAAGGAGGTTGTAATATGGAATCTTAATCTTTTTAATAATAAAATGGGTTGTGCCT
130 AGAAATGAGGTTGTAATATGAAATCTTAATATTTTTAATAATAAAAT-GGTT-CGCCT
7933271 AAAATGTTATCAGAGTTTAAGCTGATGGAGCCTTTTAATTTCCTACGATAAGAAAATAAGTTAAA
1 AAAATGTTATCAGAGTTTAAGCTGATGGAGCCTTTTAATTTCCTACGATAAGAAAATAAGTTAAA
* * * *
7933336 AACTGAAAAATATTATGAACATATATAATAAGTATGATCGCACCCAATAATGTATTGTTTCAGTA
66 AACTG-AAAATGTTATGAACATATATAATAAATACGATTGCACCCAATAATGTATTGTTTCAGTA
* * *
7933401 AAAAATGAGTTTGTAATATGAAATCTTAATATTTTAAATAATAAAA-----CGCCT
130 AGAAATGAGGTTGTAATATGAAATCTTAATATTTTTAATAATAAAATGGTTCGCCT
* * * * * * *
7933452 AAAATATTATCAGAGTTTAAGATGAT-AAGGTCTTTTAATTTCCCATGATAAGAAAATAAGTTTA
1 AAAATGTTATCAGAGTTTAAGCTGATGGA-GCCTTTTAATTTCCTACGATAAGAAAATAAGTTAA
* * * * ** * *
7933516 AAACTCAAAATGTTATAAATATGTATAATAAATACGATTGCATACAATAATGT-TATGATTCAAT
65 AAACTGAAAATGTTATGAACATATATAATAAATACGATTGCACCCAATAATGTAT-TGTTTCAGT
* * * * * *
7933580 AAGAAAT-AGGTTGTGATTTGTAATGTTAATATTTTTATTAATAAAATAGGTTACGCCC
129 AAGAAATGAGGTTGTAATATGAAATCTTAATATTTTTAATAATAAAAT-GGTT-CGCCT
7933638 AAGAATGT
1 AA-AATGT
7933646 CATGGTTCAT
Statistics
Matches: 319, Mismatches: 44, Indels: 24
0.82 0.11 0.06
Matches are distributed among these distances:
179 33 0.10
180 52 0.16
181 64 0.20
186 9 0.03
187 69 0.22
188 92 0.29
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (185 bp):
AAAATGTTATCAGAGTTTAAGCTGATGGAGCCTTTTAATTTCCTACGATAAGAAAATAAGTTAAA
AACTGAAAATGTTATGAACATATATAATAAATACGATTGCACCCAATAATGTATTGTTTCAGTAA
GAAATGAGGTTGTAATATGAAATCTTAATATTTTTAATAATAAAATGGTTCGCCT
Found at i:7933917 original size:264 final size:264
Alignment explanation
Indices: 7933447--7934487 Score: 1331
Period size: 264 Copynumber: 3.9 Consensus size: 264
7933437 AATAATAAAA
* * * ** * *
7933447 CGCCTAAAATATTATCAGAGTTTAAGATGAT-AAGGTCTTTTAATTTCCCATGATAAGAAAATAA
1 CGCCTAAAATATTATCAAAGTTTAAGATGATGGA-GCCTTGGAGTTTCCCACGATAAGAAAATAA
* * **** * *
7933511 GTTTAAAA-CTCAAAATGTTATAAATATGTATAATAAATACGATTGCATACAATAATGTTATGAT
65 G-TTAAAAGCTTAAAATGTTATAAATATGTATAATAAATACGGTTGTGCCCAATAATGTCATGGT
*
7933575 TCAATAAGAAATAGGTTGTGATTTGTAATGTTAATATTTTTATTAATAAAATAGGTTACGCCCAA
129 TCAATAAGAAATAGGTTGTGATTTGTAATGTTAATATTTTTATTAATAAAATAGATTACGCCCAA
* * * *
7933640 GAATGTCATGGTTCATTAAGAAAGCAAGTTGCATTATGGAATCTTACTATTTTTAATAATAAAAT
194 GAATGTCATGGTTCAATAAGAAAGCATGTTGCAATATGGAATCTTAATATTTTTAATAATAAAAT
7933705 GGGTTG
259 GGGTTG
* * *
7933711 CGCCTAAAATATTATCAAAGTTTAAGATGATTGAGCCTTGGAGTTTCCCGCGATAATAAAATAAG
1 CGCCTAAAATATTATCAAAGTTTAAGATGATGGAGCCTTGGAGTTTCCCACGATAAGAAAATAAG
* *
7933776 TTAAAAGCTTAAAATGTTATGAATATGTATAATAAATACAGTTGTGCCCAATAATGTCATGGTTC
66 TTAAAAGCTTAAAATGTTATAAATATGTATAATAAATACGGTTGTGCCCAATAATGTCATGGTTC
* * **
7933841 AATAAGAAATAGGTT-TAGATTTTTAATGTTAATATTTTTATTAATAAAATAGGTTGTGCCCAAG
131 AATAAGAAATAGGTTGT-GATTTGTAATGTTAATATTTTTATTAATAAAATAGATTACGCCCAAG
* * *
7933905 AATG-CTATGGTTCAGTAAGAAAGTATGTTGCAATCTGGAATCTTAATATTTTTAATAATAAAAT
195 AATGTC-ATGGTTCAATAAGAAAGCATGTTGCAATATGGAATCTTAATATTTTTAATAATAAAAT
* *
7933969 GAGTTC
259 GGGTTG
* * * * * * *
7933975 CGCTTAAAATATTATCAGAGTTTAAGTTGATGGAGCCTTGAAGTTTCACATGATAAGAACATAAG
1 CGCCTAAAATATTATCAAAGTTTAAGATGATGGAGCCTTGGAGTTTCCCACGATAAGAAAATAAG
* *
7934040 TTAAAAG-TTGAAAATGTTATGAATATGTATAATAAATACGGTTGTGCCCAATAATGTCATTGTT
66 TTAAAAGCTT-AAAATGTTATAAATATGTATAATAAATACGGTTGTGCCCAATAATGTCATGGTT
* * * **
7934104 CAATAAAAAATAGGTTGTGATTTGTAATGTTAATATTTTTACTAATAAAATAAATTACATCCAAG
130 CAATAAGAAATAGGTTGTGATTTGTAATGTTAATATTTTTATTAATAAAATAGATTACGCCCAAG
* * * * *
7934169 AATGTCATGGTTCACTAAGAAAACATGTTGCAATCTGGAATCTTACTATTTTTAATATTAAAATG
195 AATGTCATGGTTCAATAAGAAAGCATGTTGCAATATGGAATCTTAATATTTTTAATAATAAAATG
7934234 GGTTG
260 GGTTG
* * * **
7934239 CACCTAAAATATTATCAAAGTTTAAGCTGATGGAGCTTTGGAGTTTATCACGATAAGAAAATAAG
1 CGCCTAAAATATTATCAAAGTTTAAGATGATGGAGCCTTGGAGTTTCCCACGATAAGAAAATAAG
* * * *
7934304 TTAAAAGTTTCAAATGTTATAAATAAGTATAATAAATACGGTTGCGCCCAATAATGTCATGGTTC
66 TTAAAAGCTTAAAATGTTATAAATATGTATAATAAATACGGTTGTGCCCAATAATGTCATGGTTC
* * * * * *
7934369 AATAAGAAATAGGGTT-T-ATTTATTTAATGTTAATATTTTTATTAATAAAAAATATTCCGTCAA
131 AATAAGAAATA-GGTTGTGA-TT-TGTAATGTTAATATTTTTATTAATAAAATAGATTACGCCCA
* *
7934432 AAAATGTCATGGTTCAATAAGAAAGTATGTTGCAATATGGAATCTTAATATTTTTA
193 AGAATGTCATGGTTCAATAAGAAAGCATGTTGCAATATGGAATCTTAATATTTTTA
7934488 TTAACAATCT
Statistics
Matches: 679, Mismatches: 87, Indels: 21
0.86 0.11 0.03
Matches are distributed among these distances:
263 11 0.02
264 575 0.85
265 93 0.14
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.36
Consensus pattern (264 bp):
CGCCTAAAATATTATCAAAGTTTAAGATGATGGAGCCTTGGAGTTTCCCACGATAAGAAAATAAG
TTAAAAGCTTAAAATGTTATAAATATGTATAATAAATACGGTTGTGCCCAATAATGTCATGGTTC
AATAAGAAATAGGTTGTGATTTGTAATGTTAATATTTTTATTAATAAAATAGATTACGCCCAAGA
ATGTCATGGTTCAATAAGAAAGCATGTTGCAATATGGAATCTTAATATTTTTAATAATAAAATGG
GTTG
Found at i:7934504 original size:28 final size:28
Alignment explanation
Indices: 7934464--7934519 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
7934454 AAGTATGTTG
7934464 CAATATGGAATCTTAATATTTTTATTAA
1 CAATATGGAATCTTAATATTTTTATTAA
*
7934492 CAATCTGGAATCTTAATATTTTTATTAA
1 CAATATGGAATCTTAATATTTTTATTAA
7934520 TAAAATGGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (28 bp):
CAATATGGAATCTTAATATTTTTATTAA
Found at i:7940054 original size:20 final size:20
Alignment explanation
Indices: 7940025--7940062 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7940015 TTTGATTCAC
7940025 GGAATATAAGATTATCAGTG
1 GGAATATAAGATTATCAGTG
*
7940045 GGAATGTAAGATTATCAG
1 GGAATATAAGATTATCAG
7940063 AGAATATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.05, G:0.26, T:0.29
Consensus pattern (20 bp):
GGAATATAAGATTATCAGTG
Found at i:7948255 original size:2 final size:2
Alignment explanation
Indices: 7948248--7948290 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
7948238 TCCCAACCTC
7948248 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7948290 T
1 T
7948291 TATGAATTGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7948754 original size:21 final size:22
Alignment explanation
Indices: 7948729--7948783 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
7948719 AAAGATATAA
7948729 TTTTAAAAATATTTTT-ATTAT
1 TTTTAAAAATATTTTTAATTAT
*
7948750 TTTT--ATATATTTTTAAATTAT
1 TTTTAAAAATATTTTT-AATTAT
*
7948771 TATTAAAAATATT
1 TTTTAAAAATATT
7948784 AAATATACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
19 9 0.33
21 12 0.44
23 6 0.22
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTAAAAATATTTTTAATTAT
Found at i:7953111 original size:21 final size:21
Alignment explanation
Indices: 7953085--7953124 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7953075 AAAGAGATCA
7953085 ATCATTTTCATCGAGGGATAT
1 ATCATTTTCATCGAGGGATAT
* *
7953106 ATCATTTTCCTCGTGGGAT
1 ATCATTTTCATCGAGGGAT
7953125 CGATCCAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (21 bp):
ATCATTTTCATCGAGGGATAT
Found at i:7959469 original size:20 final size:21
Alignment explanation
Indices: 7959439--7959479 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
7959429 GTCTATTATC
*
7959439 TTTTCTATTTATTTTTTTAAT
1 TTTTCTATTTAGTTTTTTAAT
7959460 TTTTCT-TTTAGTTTTTTAAT
1 TTTTCTATTTAGTTTTTTAAT
7959480 AAGAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTTCTATTTAGTTTTTTAAT
Found at i:7968238 original size:30 final size:31
Alignment explanation
Indices: 7968164--7968266 Score: 190
Period size: 31 Copynumber: 3.4 Consensus size: 31
7968154 CACATATTAA
*
7968164 TTAAATAAAAATGAATATAATCATATCTCAG
1 TTAAATAAAAATGAATATAATCATATCTTAG
7968195 TTAAATAAAAATGAATATAATCATATCTTAG
1 TTAAATAAAAATGAATATAATCATATCTTAG
7968226 TTAAAT-AAAATGAATATAATCATATCTTAG
1 TTAAATAAAAATGAATATAATCATATCTTAG
7968256 TTAAATAAAAA
1 TTAAATAAAAA
7968267 AGAAAGTGTC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
30 30 0.43
31 40 0.57
ACGTcount: A:0.53, C:0.07, G:0.06, T:0.34
Consensus pattern (31 bp):
TTAAATAAAAATGAATATAATCATATCTTAG
Found at i:7975784 original size:14 final size:14
Alignment explanation
Indices: 7975765--7975799 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
7975755 AATTTTGTTT
7975765 TCATTTTCTGGAAA
1 TCATTTTCTGGAAA
7975779 TCATTTTCTGGAAA
1 TCATTTTCTGGAAA
7975793 TCATTTT
1 TCATTTT
7975800 GTTTGCTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.49
Consensus pattern (14 bp):
TCATTTTCTGGAAA
Found at i:7993825 original size:18 final size:18
Alignment explanation
Indices: 7993802--7993840 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
7993792 GATGCTTCTT
7993802 TGAAATATAGAAATAAAA
1 TGAAATATAGAAATAAAA
7993820 TGAAATATAGAAATAAAA
1 TGAAATATAGAAATAAAA
7993838 TGA
1 TGA
7993841 TACAATTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.13, T:0.23
Consensus pattern (18 bp):
TGAAATATAGAAATAAAA
Found at i:7995922 original size:26 final size:26
Alignment explanation
Indices: 7995891--7995943 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
7995881 TTGTAACTGG
7995891 TTTGATAACAGAACTGAATACTTCAT
1 TTTGATAACAGAACTGAATACTTCAT
7995917 TTTGATAACAGAACTGAATACTTCAT
1 TTTGATAACAGAACTGAATACTTCAT
7995943 T
1 T
7995944 AAAATCGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (26 bp):
TTTGATAACAGAACTGAATACTTCAT
Found at i:7996421 original size:69 final size:69
Alignment explanation
Indices: 7996310--7996450 Score: 219
Period size: 69 Copynumber: 2.0 Consensus size: 69
7996300 TAAACCTATT
*** * *
7996310 TGAACACTAGTTTCAGCCTCATTCTCAACAATTGGTAGAAGTTTCTCTTGCAGATCACCAAGAGC
1 TGAACACTAGTTTCAGCCTCATTCTCAACAATCAATAGAAGTTCCTCTTGCAGATCACCAAGAAC
7996375 TTCC
66 TTCC
* *
7996379 TGAACACTAGTTTCAGCCTTATTCTCAATAATCAATAGAAGTTCCTCTTGCAGATCACCAAGAAC
1 TGAACACTAGTTTCAGCCTCATTCTCAACAATCAATAGAAGTTCCTCTTGCAGATCACCAAGAAC
7996444 TTCC
66 TTCC
7996448 TGA
1 TGA
7996451 GACATGACAG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (69 bp):
TGAACACTAGTTTCAGCCTCATTCTCAACAATCAATAGAAGTTCCTCTTGCAGATCACCAAGAAC
TTCC
Found at i:8006361 original size:108 final size:107
Alignment explanation
Indices: 8006172--8006385 Score: 347
Period size: 108 Copynumber: 2.0 Consensus size: 107
8006162 TCTATATAGA
* *
8006172 TGATTGAAAGGAAATATTTATTTAGTTCCCAAATTTGCCAGGGTGGGTGCATTTGCTTTCTCATA
1 TGATTGAAAGGAAATATTCATTTAGTTCCCAAATTTACCAGGGTGGGTGCATTTGCTTTCTCATA
8006237 GACCATTCTGATAATTGGTTGCTTATTGGCACTGAAAACTGTT
66 GACCATTCTGATAATTGGTTGCTTATTGGCA-TGAAAACTGTT
* * *
8006280 TGATTGAAAGTAAATATTCATTTAGTTCCTAAATTTACCAGGGTGGGTGCATTTGCTTTCTCATT
1 TGATTGAAAGGAAATATTCATTTAGTTCCCAAATTTACCAGGGTGGGTGCATTTGCTTTCTCATA
** *
8006345 GATGATTCTGATAATTGGTTGCTTATTGGCATTAAAACTGT
66 GACCATTCTGATAATTGGTTGCTTATTGGCATGAAAACTGT
8006386 ATATGTTTTA
Statistics
Matches: 98, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
107 9 0.09
108 89 0.91
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.40
Consensus pattern (107 bp):
TGATTGAAAGGAAATATTCATTTAGTTCCCAAATTTACCAGGGTGGGTGCATTTGCTTTCTCATA
GACCATTCTGATAATTGGTTGCTTATTGGCATGAAAACTGTT
Found at i:8014899 original size:20 final size:20
Alignment explanation
Indices: 8014874--8014944 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
8014864 GTTGCATTTA
*
8014874 GCGTTGCGATTTTTCAGTTC
1 GCGTTGCGATTTTTCAATTC
* * *
8014894 GCGTTGCGATAGTTTAAAATC
1 GCGTTGCGAT-TTTTCAATTC
* *
8014915 GCGTTGCGATTTTCCATTTC
1 GCGTTGCGATTTTTCAATTC
*
8014935 GCGTTACGAT
1 GCGTTGCGAT
8014945 AGTCTACAAT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 24 0.60
21 16 0.40
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (20 bp):
GCGTTGCGATTTTTCAATTC
Found at i:8017005 original size:21 final size:21
Alignment explanation
Indices: 8016979--8017019 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8016969 ACACGCTTTT
8016979 AGCTTAGGAGATTGTTAAGGA
1 AGCTTAGGAGATTGTTAAGGA
8017000 AGCTTAGGAGATTGTTAAGG
1 AGCTTAGGAGATTGTTAAGG
8017020 GCTATGCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.34, T:0.29
Consensus pattern (21 bp):
AGCTTAGGAGATTGTTAAGGA
Found at i:8018433 original size:2 final size:2
Alignment explanation
Indices: 8018426--8018462 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8018416 TTAATAGATT
8018426 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8018463 AATCGCAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8018888 original size:19 final size:18
Alignment explanation
Indices: 8018864--8018900 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
8018854 ATATTGTTTC
8018864 TCTTTTCTCAATAGTATTT
1 TCTTTTCTCAATAG-ATTT
*
8018883 TCTTTTTTCAATAGATTT
1 TCTTTTCTCAATAGATTT
8018901 ATGGAGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.22, C:0.14, G:0.05, T:0.59
Consensus pattern (18 bp):
TCTTTTCTCAATAGATTT
Found at i:8027558 original size:2 final size:2
Alignment explanation
Indices: 8027551--8027576 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8027541 TAATGGTATT
8027551 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
8027577 TTTACCTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8028414 original size:18 final size:18
Alignment explanation
Indices: 8028391--8028454 Score: 78
Period size: 18 Copynumber: 3.5 Consensus size: 18
8028381 TTTTTCATTT
8028391 TTATTATTATTATTAAAA
1 TTATTATTATTATTAAAA
8028409 TTATTATTATTATATATAATA
1 TTATTATTATTAT-TA-AA-A
8028430 TTA-TATTATTATT-AAA
1 TTATTATTATTATTAAAA
*
8028446 TAATTATTA
1 TTATTATTA
8028455 CAAGCCCAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
16 3 0.07
17 7 0.17
18 13 0.32
19 3 0.07
20 11 0.27
21 4 0.10
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTATTATTATTATTAAAA
Found at i:8028454 original size:3 final size:3
Alignment explanation
Indices: 8028391--8028443 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
8028381 TTTTTCATTT
** *
8028391 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA -TA TATA ATA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
8028435 TTA TTA TTA
1 TTA TTA TTA
8028444 AATAATTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
2 4 0.10
3 35 0.85
4 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:8036711 original size:2 final size:2
Alignment explanation
Indices: 8036706--8036749 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
8036696 AATGTTATTA
8036706 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8036748 AT
1 AT
8036750 TAAAATCTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8037963 original size:20 final size:19
Alignment explanation
Indices: 8037940--8037982 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8037930 TTCAGTATTA
8037940 ATATTAACCCCTAAGTATCG
1 ATATTAACCCCT-AGTATCG
**
8037960 ATATTAACTTCTAGTATCG
1 ATATTAACCCCTAGTATCG
8037979 ATAT
1 ATAT
8037983 CAACTGGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (19 bp):
ATATTAACCCCTAGTATCG
Found at i:8040873 original size:24 final size:24
Alignment explanation
Indices: 8040846--8040893 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
8040836 CTCCTTCAGA
*
8040846 TTCTCCTACTCCTTCGGATGCTTC
1 TTCTCCTACTCCTTCAGATGCTTC
*
8040870 TTCTCCTTCTCCTTCAGATGCTTC
1 TTCTCCTACTCCTTCAGATGCTTC
8040894 CTCGCTTTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.08, C:0.38, G:0.10, T:0.44
Consensus pattern (24 bp):
TTCTCCTACTCCTTCAGATGCTTC
Found at i:8040875 original size:18 final size:18
Alignment explanation
Indices: 8040831--8040878 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
8040821 TTTCCTCCAA
*
8040831 TTCTTCTCCTTCAGATTC
1 TTCTTCTCCTTCAGATGC
* * *
8040849 TCCTACTCCTTCGGATGC
1 TTCTTCTCCTTCAGATGC
8040867 TTCTTCTCCTTC
1 TTCTTCTCCTTC
8040879 TCCTTCAGAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.08, C:0.38, G:0.08, T:0.46
Consensus pattern (18 bp):
TTCTTCTCCTTCAGATGC
Found at i:8042902 original size:15 final size:15
Alignment explanation
Indices: 8042882--8042911 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8042872 CATTTCCTTT
8042882 AATCCGAACAATAAA
1 AATCCGAACAATAAA
8042897 AATCCGAACAATAAA
1 AATCCGAACAATAAA
8042912 CTTTTATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.20, G:0.07, T:0.13
Consensus pattern (15 bp):
AATCCGAACAATAAA
Found at i:8048291 original size:16 final size:15
Alignment explanation
Indices: 8048260--8048297 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
8048250 ATGGAACAAG
8048260 TAAAAAATTGATAAA
1 TAAAAAATTGATAAA
8048275 TAAAAAATTAAGA-AAA
1 TAAAAAATT--GATAAA
8048291 TAAAAAA
1 TAAAAAA
8048298 CGATAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 10 0.48
17 2 0.10
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (15 bp):
TAAAAAATTGATAAA
Found at i:8061432 original size:13 final size:15
Alignment explanation
Indices: 8061400--8061436 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
8061390 GTGGACCCTG
*
8061400 AAAAAGTAATGAATT
1 AAAAAATAATGAATT
8061415 AAAAAATAAT-AA-T
1 AAAAAATAATGAATT
8061428 AAAAAATAA
1 AAAAAATAA
8061437 AAAGAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (15 bp):
AAAAAATAATGAATT
Found at i:8061626 original size:38 final size:37
Alignment explanation
Indices: 8061487--8061659 Score: 117
Period size: 38 Copynumber: 4.6 Consensus size: 37
8061477 TTTAAAAAAA
* *
8061487 TTAAAAACATATA--ATACATA-TTTTCAAATAATG-TT
1 TTAAAAATATATATTATAAATATTTTTC-AA-AATGATT
* * * *
8061522 TTAAAAATATATATTATATATATACTTTCTAAAAAAGGTT
1 TTAAAAATATATATTATA-A-ATA-TTTTTCAAAATGATT
* * *
8061562 TTCAAAATCATATACTAT--ATAGTTTTCAAAATGATT
1 TTAAAAAT-ATATATTATAAATATTTTTCAAAATGATT
*
8061598 TTAAAAACTATATATTATAAATATTTTTCAAACTGATTTT
1 TTAAAAA-TATATATTATAAATATTTTTCAAAATGA--TT
*
8061638 TTAAAAAT-TATATTATATATAT
1 TTAAAAATATATATTATAAATAT
8061660 ATATATATTT
Statistics
Matches: 108, Mismatches: 17, Indels: 23
0.73 0.11 0.16
Matches are distributed among these distances:
35 12 0.11
36 24 0.22
37 7 0.06
38 27 0.25
39 7 0.06
40 20 0.19
41 11 0.10
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (37 bp):
TTAAAAATATATATTATAAATATTTTTCAAAATGATT
Found at i:8061706 original size:115 final size:111
Alignment explanation
Indices: 8061487--8061746 Score: 255
Period size: 116 Copynumber: 2.3 Consensus size: 111
8061477 TTTAAAAAAA
*
8061487 TTAAAAACATATA-ATACATA-TTTTCAAATAATGTTTTAAAAATATATATTATATATATACTTT
1 TTAAAAACATATATATAAATATTTTTCAAATAATGTTTTAAAAATATATATTATATATATACTTT
**
8061550 CTAAAAAAGGTTTTCAAAATCATATACTATATAGTTTTCAAAATGATT
66 CTAAAAAA-GAATTCAAAATCATATACTATATAG-TTTCAAAATGATT
* *
8061598 TTAAAAACTATATATTATAAATATTTTTCAAACTGATTTTTTAAAAATTATATTATATATATATA
1 TTAAAAAC-ATATA-TATAAATATTTTTCAAA-TAATGTTTTAAAAA-TATA-TAT-TATATATA
* *
8061663 TA-TATT-TAAAAAA-AATTCGAAAATTATATTA-TATATA-TTTCAAAATGTTT
60 TACT-TTCTAAAAAAGAATTC-AAAATCATA-TACTATATAGTTTCAAAATGATT
* *
8061713 TTAAAAAAAACTATATAATATATATGTTTTCAAA
1 TT-AAAAACA-TATAT-ATAAATAT-TTTTCAAA
8061747 ACTTATATAA
Statistics
Matches: 125, Mismatches: 9, Indels: 24
0.79 0.06 0.15
Matches are distributed among these distances:
111 8 0.06
112 5 0.04
114 6 0.05
115 24 0.19
116 31 0.25
117 26 0.21
118 13 0.10
119 12 0.10
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.43
Consensus pattern (111 bp):
TTAAAAACATATATATAAATATTTTTCAAATAATGTTTTAAAAATATATATTATATATATACTTT
CTAAAAAAGAATTCAAAATCATATACTATATAGTTTCAAAATGATT
Found at i:8061742 original size:28 final size:28
Alignment explanation
Indices: 8061711--8061783 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 28
8061701 TTCAAAATGT
8061711 TTTTAAAAAAAAC-TATATAATATATATG
1 TTTT-AAAAAAACTTATATAATATATATG
*
8061739 TTTT--CAAAACTTATATAATATATATG
1 TTTTAAAAAAACTTATATAATATATATG
* * *
8061765 TTTTCAAAAACCATATATA
1 TTTTAAAAAAACTTATATA
8061784 TATTTTCAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
25 5 0.13
26 19 0.50
28 14 0.37
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (28 bp):
TTTTAAAAAAACTTATATAATATATATG
Found at i:8061759 original size:24 final size:25
Alignment explanation
Indices: 8061719--8061786 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 25
8061709 GTTTTTAAAA
8061719 AAAACTATATAATATATATGTTTTC
1 AAAACTATATAATATATATGTTTTC
8061744 AAAACTTATATAATATATATGTTTTC
1 AAAAC-TATATAATATATATGTTTTC
*
8061770 AAAAACCATAT-ATATAT
1 -AAAACTATATAATATAT
8061787 TTTCAAAATG
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
25 11 0.28
26 24 0.60
27 5 0.12
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (25 bp):
AAAACTATATAATATATATGTTTTC
Found at i:8062980 original size:12 final size:12
Alignment explanation
Indices: 8062943--8062980 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
8062933 TAATTTAAGT
8062943 ATATTATATATAA
1 ATATTA-ATATAA
8062956 ATATTAA-ACTAA
1 ATATTAATA-TAA
8062968 ATATTAATATAA
1 ATATTAATATAA
8062980 A
1 A
8062981 CATTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
11 1 0.04
12 15 0.65
13 7 0.30
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
ATATTAATATAA
Found at i:8063361 original size:3 final size:3
Alignment explanation
Indices: 8063355--8063383 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8063345 AGTATTCACA
8063355 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8063384 AATTCAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8066586 original size:19 final size:19
Alignment explanation
Indices: 8066564--8066600 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8066554 TAAAATACTA
*
8066564 AAATAAAAATATTCTATTG
1 AAATAAAAATATTATATTG
8066583 AAATAAAAATATTATATT
1 AAATAAAAATATTATATT
8066601 ACATTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (19 bp):
AAATAAAAATATTATATTG
Found at i:8072269 original size:20 final size:23
Alignment explanation
Indices: 8072214--8072278 Score: 73
Period size: 24 Copynumber: 2.9 Consensus size: 23
8072204 TATCGATGCA
*
8072214 TAAGGAGTGCATCGATACACATGT
1 TAAGGAATGCATCGATACAC-TGT
*
8072238 TAAGGGATGCATCGATACACTG-
1 TAAGGAATGCATCGATACACTGT
*
8072260 T-A-GAATGCATCGATGCACT
1 TAAGGAATGCATCGATACACT
8072279 TCAAAGGGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 15 0.41
21 1 0.03
22 1 0.03
23 2 0.05
24 18 0.49
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (23 bp):
TAAGGAATGCATCGATACACTGT
Found at i:8075328 original size:26 final size:26
Alignment explanation
Indices: 8075285--8075334 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
8075275 TTATATTTTC
* *
8075285 ATTCTCATAAAACGTTATGAATTCGT
1 ATTCTCATAAAAAGTTATAAATTCGT
* *
8075311 ATTCTCTTAAAAATTTATAAATTC
1 ATTCTCATAAAAAGTTATAAATTC
8075335 AACCTTGACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (26 bp):
ATTCTCATAAAAAGTTATAAATTCGT
Found at i:8077661 original size:19 final size:19
Alignment explanation
Indices: 8077637--8077734 Score: 133
Period size: 19 Copynumber: 4.9 Consensus size: 19
8077627 CGTTGCGATT
8077637 TTGGACTATCGCAACGAAC
1 TTGGACTATCGCAACGAAC
*
8077656 TTGGACTATCGCAACGAAT
1 TTGGACTATCGCAACGAAC
*
8077675 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAA--CGAAC
*
8077698 TTCGACTATCGCAACGAAC
1 TTGGACTATCGCAACGAAC
8077717 TTGGACTATCGCAACGAA
1 TTGGACTATCGCAACGAA
8077735 TTTGTAATAA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
19 46 0.67
21 14 0.20
23 9 0.13
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.21
Consensus pattern (19 bp):
TTGGACTATCGCAACGAAC
Found at i:8077705 original size:42 final size:40
Alignment explanation
Indices: 8077644--8077734 Score: 123
Period size: 42 Copynumber: 2.3 Consensus size: 40
8077634 ATTTTGGACT
* *
8077644 ATCGCAACGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTCGACTATCGCAACGAACTTGGAATAA
*
8077684 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGACT--
1 ATCGCAA--CGAACTTCGACTATCGCAACGAACTTGGAATAA
8077724 ATCGCAACGAA
1 ATCGCAACGAA
8077735 TTTGTAATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
38 4 0.09
40 14 0.30
42 28 0.61
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (40 bp):
ATCGCAACGAACTTCGACTATCGCAACGAACTTGGAATAA
Found at i:8077735 original size:61 final size:61
Alignment explanation
Indices: 8077640--8077772 Score: 248
Period size: 61 Copynumber: 2.2 Consensus size: 61
8077630 TGCGATTTTG
8077640 GACTATCGCAACGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
8077701 GACTATCGCAACGAACTTGGACTATCGCAACGAATTTGTAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
8077762 AACTATCGCAA
1 GACTATCGCAA
8077773 ATCAGTTTCC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 70 1.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (61 bp):
GACTATCGCAACGAACTTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:8078822 original size:20 final size:21
Alignment explanation
Indices: 8078797--8078842 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
8078787 GGGTTTAACA
*
8078797 ATAAATTAGATT-TTTTATTT
1 ATAAAATAGATTATTTTATTT
*
8078817 -TAAAATATATTATTTTATTT
1 ATAAAATAGATTATTTTATTT
8078837 ATAAAA
1 ATAAAA
8078843 AAAGTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 9 0.41
20 8 0.36
21 5 0.23
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
ATAAAATAGATTATTTTATTT
Found at i:8086216 original size:92 final size:91
Alignment explanation
Indices: 8086053--8086237 Score: 318
Period size: 92 Copynumber: 2.0 Consensus size: 91
8086043 CTCTCAAACC
* *
8086053 TTTGCTGCTTCTGAACTCCATCCTCCATCCTCTGCCTCAGGTACTGCACCCGTTTTCTAATATTT
1 TTTGCTGCTTCTGAACTCCACCCTCAATCCTCTGCCTCAGGTACTGCACCCGTTTTCTAATATTT
8086118 TCTTTTTTACTTCACCCTTTTTTTATT
66 TCTTTTTTACTTCA-CCTTTTTTTATT
* *
8086145 TTTGCTGCTTCTGAACTCCACCCTCAATCCTCTGCCTCCGGTACTGCTCCC-TTTTCTAATATTT
1 TTTGCTGCTTCTGAACTCCACCCTCAATCCTCTGCCTCAGGTACTGCACCCGTTTTCTAATATTT
8086209 TCTTTTTTACTTCACCTTTTTTTATT
66 TCTTTTTTACTTCACCTTTTTTTATT
8086235 TTT
1 TTT
8086238 CCTGGTAAAG
Statistics
Matches: 89, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
90 15 0.17
91 27 0.30
92 47 0.53
ACGTcount: A:0.14, C:0.30, G:0.08, T:0.48
Consensus pattern (91 bp):
TTTGCTGCTTCTGAACTCCACCCTCAATCCTCTGCCTCAGGTACTGCACCCGTTTTCTAATATTT
TCTTTTTTACTTCACCTTTTTTTATT
Found at i:8086761 original size:21 final size:22
Alignment explanation
Indices: 8086735--8086778 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8086725 AAAATAATAT
*
8086735 ATTAAATT-TTTATTTTTTTAA
1 ATTAAATTATTTATTCTTTTAA
*
8086756 ATTAAATTATTTGTTCTTTTAA
1 ATTAAATTATTTATTCTTTTAA
8086778 A
1 A
8086779 ATCAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
ATTAAATTATTTATTCTTTTAA
Found at i:8089354 original size:15 final size:15
Alignment explanation
Indices: 8089331--8089362 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8089321 TTCTCAGGTA
*
8089331 TCTCTCTTTTCATCT
1 TCTCCCTTTTCATCT
8089346 TCTCCCTTTTCATCT
1 TCTCCCTTTTCATCT
8089361 TC
1 TC
8089363 CTTGACCTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.38, G:0.00, T:0.56
Consensus pattern (15 bp):
TCTCCCTTTTCATCT
Found at i:8098105 original size:2 final size:2
Alignment explanation
Indices: 8098094--8098137 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
8098084 ATCTATAAAG
8098094 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8098135 TA T
1 TA T
8098138 TTATGTGTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8098726 original size:23 final size:23
Alignment explanation
Indices: 8098700--8098747 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
8098690 ATAAAGTACA
*
8098700 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
8098723 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
8098746 AT
1 AT
8098748 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:8099154 original size:21 final size:20
Alignment explanation
Indices: 8099124--8099177 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
8099114 GATAGACACT
*
8099124 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
8099145 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
8099168 TTACATTATA
1 TTACATTATA
8099178 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:8099165 original size:23 final size:23
Alignment explanation
Indices: 8099139--8099201 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
8099129 ATATAACCAT
8099139 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
8099162 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
8099185 TACCTATTACATCATAT
1 TACCTATTACATTATAT
8099202 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:8101900 original size:200 final size:199
Alignment explanation
Indices: 8101510--8102669 Score: 2090
Period size: 200 Copynumber: 5.8 Consensus size: 199
8101500 TCGAGAAGCA
*
8101510 AATTGTACTGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
1 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
*
8101575 TCGACAC-TTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAA
66 TCGACACTTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTAAAAATTCATTCTGGAAA
8101639 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCG
131 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCG
8101704 GTAT
196 GTAT
8101708 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
1 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
* *** *
8101773 TCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGA
66 TCGACACTTTTTTATATATGGATCGACACTTTATGGATGCACCTTG-TAAAAATTCATTCTGGAA
8101838 AAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACC
130 AAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACC
8101903 GGTAT
195 GGTAT
*
8101908 AATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
1 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
*
8101973 TCGACAC-TTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAA
66 TCGACACTTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTAAAAATTCATTCTGGAAA
8102037 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCG
131 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCG
8102102 GTAT
196 GTAT
8102106 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
1 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
* *** *
8102171 TCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGA
66 TCGACACTTTTTTATATATGGATCGACACTTTATGGATGCACCTTG-TAAAAATTCATTCTGGAA
8102236 AAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACC
130 AAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACC
8102301 GGTAT
195 GGTAT
8102306 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
1 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
* *** *
8102371 TCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGA
66 TCGACACTTTTTTATATATGGATCGACACTTTATGGATGCACCTTG-TAAAAATTCATTCTGGAA
8102436 AAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACC
130 AAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACC
8102501 GGTAT
195 GGTAT
*
8102506 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATAATTTTGGGTTCGATGATTTTGGGA
1 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
*
8102571 TCGACACTTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAA
66 TCGACACTTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTAAAAATTCATTCTGGAAA
8102636 AAAAATATCGACACAAACTATATTAGTGTCGACA
131 AAAAATATCGACACAAACTATATTAGTGTCGACA
8102670 TGACCCTTAA
Statistics
Matches: 930, Mismatches: 28, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
198 226 0.24
199 157 0.17
200 547 0.59
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (199 bp):
AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
TCGACACTTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTAAAAATTCATTCTGGAAA
AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCG
GTAT
Found at i:8102246 original size:398 final size:398
Alignment explanation
Indices: 8101510--8102669 Score: 2160
Period size: 398 Copynumber: 2.9 Consensus size: 398
8101500 TCGAGAAGCA
*
8101510 AATTGTACTGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
1 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
8101575 TCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAAA
66 TCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAAA
8101640 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
131 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
8101705 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
196 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
8101770 GGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
261 GGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
8101835 GGAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAA
326 GGAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAA
8101900 ACCGGTAT
391 ACCGGTAT
*
8101908 AATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
1 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
8101973 TCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAAA
66 TCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAAA
8102038 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
131 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
8102103 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
196 TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
8102168 GGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
261 GGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
8102233 GGAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAA
326 GGAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAA
8102298 ACCGGTAT
391 ACCGGTAT
8102306 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
1 AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
* * *** *
8102371 TCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGA
66 TCGACAC-TTTTTATATATGGATCGACACTTTATTGATGCACCTTG-TAAAAATTCATTCTGGAA
8102436 AAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACC
129 AAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACC
*
8102501 GGTATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATAATTTTGGGTTCGATGATTT
194 GGTATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTT
* * ***
8102566 TGGGATCGACACTTTTTTATATATGGATCGACACTTTATTGATGCACCTTG-TAAAAATTCATTC
259 TGGGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTC
*
8102630 TGGAAAAAAAATATCGACACAAACTATATTAGTGTCGACA
324 TGGGAAAAAAATATCGACACAAACTATATTAGTGTCGACA
8102670 TGACCCTTAA
Statistics
Matches: 744, Mismatches: 16, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
398 467 0.63
399 85 0.11
400 192 0.26
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (398 bp):
AATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGA
TCGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTAAAAATTCATTCTGGAAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGG
TATAATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTG
GGAAAAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAA
ACCGGTAT
Found at i:8102776 original size:37 final size:38
Alignment explanation
Indices: 8102735--8102814 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
8102725 TCTCATTCAT
*
8102735 AATTAT-ATTCACATAAAAAAATATAAATCGTATACAA
1 AATTATAAATCACATAAAAAAATATAAATCGTATACAA
** * * *
8102772 AATTATAAATCGTATACAAAATTATAAATCTTATACAA
1 AATTATAAATCACATAAAAAAATATAAATCGTATACAA
8102810 AATTA
1 AATTA
8102815 ACTCGACATT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 6 0.17
38 30 0.83
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.33
Consensus pattern (38 bp):
AATTATAAATCACATAAAAAAATATAAATCGTATACAA
Found at i:8102778 original size:19 final size:19
Alignment explanation
Indices: 8102751--8102814 Score: 110
Period size: 19 Copynumber: 3.4 Consensus size: 19
8102741 ATTCACATAA
*
8102751 AAAAATATAAATCGTATAC
1 AAAATTATAAATCGTATAC
8102770 AAAATTATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
8102789 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
8102808 AAAATTA
1 AAAATTA
8102815 ACTCGACATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:8104645 original size:33 final size:33
Alignment explanation
Indices: 8104608--8104673 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
8104598 CATCTTAATA
*
8104608 TCACCCCTTAACACCGAAACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
***
8104641 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
8104674 CCATCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.45, G:0.02, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCGAAACTTCTTTCACCACT
Found at i:8106830 original size:24 final size:24
Alignment explanation
Indices: 8106793--8106845 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
8106783 CCGTTCTATC
8106793 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
8106817 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
8106841 TATTT
1 TATTT
8106846 AATCGATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:8107036 original size:20 final size:19
Alignment explanation
Indices: 8106990--8107036 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
8106980 TCCGGTATCA
*
8106990 TTTTACCGTTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
8107009 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
8107030 TTTTACC
1 TTTTACC
8107037 TGTTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.19, C:0.17, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:8107202 original size:20 final size:20
Alignment explanation
Indices: 8107154--8107203 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
8107144 TCGACACTTT
*
8107154 TAATTTTACCGGTTTTATCA
1 TAATTTTACCGGTTTGATCA
*
8107174 T-TTTGTTACCGGTTTGATCA
1 TAATT-TTACCGGTTTGATCA
8107194 TAATTTTACC
1 TAATTTTACC
8107204 TGGTATATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (20 bp):
TAATTTTACCGGTTTGATCA
Found at i:8110241 original size:23 final size:23
Alignment explanation
Indices: 8110206--8110254 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
8110196 GTTTGACTCT
* *
8110206 ATTCATAATTACGTGAGTTTAAG
1 ATTCAAAAATACGTGAGTTTAAG
8110229 ATTCAAAAATACGTGAGTTTAAG
1 ATTCAAAAATACGTGAGTTTAAG
8110252 ATT
1 ATT
8110255 ATCAAGTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (23 bp):
ATTCAAAAATACGTGAGTTTAAG
Found at i:8110410 original size:63 final size:63
Alignment explanation
Indices: 8110332--8110450 Score: 175
Period size: 63 Copynumber: 1.9 Consensus size: 63
8110322 TAAGATATTA
* *
8110332 TCATGTTAGGAATTTGTAAGCGGAAAAATAACTAAACCAATATCAACATAAAATAAAATATGC
1 TCATGGTAGGAATTTGTAAGCAGAAAAATAACTAAACCAATATCAACATAAAATAAAATATGC
* * * * *
8110395 TCATGGTAGGTATTTGTAAGTAGAAAAATAATTAGACCAATATCAATATAAAATAA
1 TCATGGTAGGAATTTGTAAGCAGAAAAATAACTAAACCAATATCAACATAAAATAA
8110451 GACATGCACA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 49 1.00
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (63 bp):
TCATGGTAGGAATTTGTAAGCAGAAAAATAACTAAACCAATATCAACATAAAATAAAATATGC
Found at i:8110914 original size:42 final size:41
Alignment explanation
Indices: 8110854--8110970 Score: 207
Period size: 42 Copynumber: 2.8 Consensus size: 41
8110844 CCCCGAATTC
*
8110854 CCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTTT
1 CCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTTTT
8110895 CTCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTTTT
1 C-CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTTTT
8110937 CCGGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
1 CC-GTGTTTGTTTCACGTAATTCGTTTTCCGGAA
8110971 TGTAATTCAT
Statistics
Matches: 73, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
41 2 0.03
42 71 0.97
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (41 bp):
CCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAACGTTTT
Found at i:8111207 original size:22 final size:23
Alignment explanation
Indices: 8111160--8111220 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 23
8111150 TAATTATTAA
* *
8111160 AATATTTAAAAT-ATAT-TTATT
1 AATATTTATAATAATATAATATT
8111181 AATATTTATAATAATATAATATT
1 AATATTTATAATAATATAATATT
* *
8111204 -ATATTTTTAATATTATA
1 AATATTTATAATAATATA
8111221 TAAAATAATC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.32
22 19 0.56
23 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATATTTATAATAATATAATATT
Found at i:8111216 original size:31 final size:31
Alignment explanation
Indices: 8111171--8111319 Score: 96
Period size: 31 Copynumber: 5.1 Consensus size: 31
8111161 ATATTTAAAA
8111171 TATATTTATTAATATTTATAATAATATAATAT
1 TATATTT-TTAATATTTATAATAATATAATAT
*
8111203 TATATTTTTAATA-TTAT-ATAAAAT-A-AT
1 TATATTTTTAATATTTATAATAATATAATAT
*
8111230 CA-A---TT-ATA-TTATAATAATATAAGATAT
1 TATATTTTTAATATTTATAATAATAT-A-ATAT
8111257 TATATTTTT-AT-TTTAATAAT-ATATAATAAT
1 TATATTTTTAATATTT-ATAATAATATAAT-AT
*
8111287 T-T-TTTTTATATATTTAATAATGA-ATAATAT
1 TATATTTTTA-ATATTT-ATAATAATATAATAT
8111317 TAT
1 TAT
8111320 TTATATATTT
Statistics
Matches: 96, Mismatches: 4, Indels: 35
0.71 0.03 0.26
Matches are distributed among these distances:
22 7 0.07
23 8 0.08
26 2 0.02
27 6 0.06
28 7 0.07
29 9 0.09
30 13 0.14
31 31 0.32
32 13 0.14
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (31 bp):
TATATTTTTAATATTTATAATAATATAATAT
Found at i:8111280 original size:24 final size:23
Alignment explanation
Indices: 8111248--8111294 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
8111238 TTATAATAAT
* *
8111248 ATAAGATATTATATTTTTATTTTA
1 ATAAGATATAATAATTTT-TTTTA
*
8111272 ATAATATATAATAATTTTTTTTA
1 ATAAGATATAATAATTTTTTTTA
8111295 TATATTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
ATAAGATATAATAATTTTTTTTA
Found at i:8111293 original size:29 final size:29
Alignment explanation
Indices: 8111236--8111338 Score: 95
Period size: 29 Copynumber: 3.5 Consensus size: 29
8111226 TAATCAATTA
* *
8111236 TATTATAATAATATA-AGATATTATATTTT
1 TATTTTAATAATATATA-ATATTATTTTTT
8111265 TATTTTAATAATATATAATAATT-TTTTTT
1 TATTTTAATAATATATAAT-ATTATTTTTT
* *
8111294 ATATATTTAATAATGA-ATAATATTATTTATA
1 -TAT-TTTAATAAT-ATATAATATTATTTTTT
*
8111325 TATTTCAATAATAT
1 TATTTTAATAATAT
8111339 TTTAGTAAAG
Statistics
Matches: 62, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
28 1 0.02
29 29 0.47
30 13 0.21
31 18 0.29
32 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (29 bp):
TATTTTAATAATATATAATATTATTTTTT
Found at i:8111304 original size:28 final size:28
Alignment explanation
Indices: 8111273--8111336 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 28
8111263 TTTATTTTAA
* *
8111273 TAATATAT-AATAATTTTTTTTATATATT
1 TAATA-ATGAATAATATTATTTATATATT
8111301 TAATAATGAATAATATTATTTATATATT
1 TAATAATGAATAATATTATTTATATATT
8111329 TCAATAAT
1 T-AATAAT
8111337 ATTTTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 2 0.06
28 24 0.75
29 6 0.19
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (28 bp):
TAATAATGAATAATATTATTTATATATT
Found at i:8111582 original size:20 final size:20
Alignment explanation
Indices: 8111504--8111573 Score: 122
Period size: 20 Copynumber: 3.5 Consensus size: 20
8111494 TTTCCATATG
8111504 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
*
8111524 TTTTCCAAAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
*
8111544 TTTTACAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
8111564 TTTTCCAGAA
1 TTTTCCAGAA
8111574 TTCAAATTCC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:8111582 original size:40 final size:40
Alignment explanation
Indices: 8111504--8111582 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
8111494 TTTCCATATG
* **
8111504 TTTTCCAGAAATGTAATTCATTTTCCAAAAATGTAATTCA
1 TTTTACAGAAATGTAATTCATTTTCCAAAAATCAAATTCA
* *
8111544 TTTTACAGAAATGTAATTCATTTTCCAGAATTCAAATTC
1 TTTTACAGAAATGTAATTCATTTTCCAAAAATCAAATTC
8111583 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.41
Consensus pattern (40 bp):
TTTTACAGAAATGTAATTCATTTTCCAAAAATCAAATTCA
Found at i:8111592 original size:15 final size:15
Alignment explanation
Indices: 8111556--8111637 Score: 121
Period size: 15 Copynumber: 5.5 Consensus size: 15
8111546 TTACAGAAAT
**
8111556 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
8111571 G-AATTCAAATTCCA
1 GTAATTCAAATTCCA
**
8111585 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
8111600 GTAATTCAAATTCCA
1 GTAATTCAAATTCCA
8111615 GTAATTCAAATTCCA
1 GTAATTCAAATTCCA
8111630 GTAATTCA
1 GTAATTCA
8111638 TTTTCTGGAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
14 12 0.20
15 48 0.80
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:8111608 original size:30 final size:30
Alignment explanation
Indices: 8111556--8111637 Score: 139
Period size: 30 Copynumber: 2.8 Consensus size: 30
8111546 TTACAGAAAT
8111556 GTAATTCATTTTCCAG-AATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
8111585 GTAATTCATTTTCCAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
**
8111615 GTAATTCAAATTCCAGTAATTCA
1 GTAATTCATTTTCCAGTAATTCA
8111638 TTTTCTGGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 16 0.32
30 34 0.68
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (30 bp):
GTAATTCATTTTCCAGTAATTCAAATTCCA
Found at i:8111630 original size:45 final size:44
Alignment explanation
Indices: 8111556--8111642 Score: 147
Period size: 45 Copynumber: 2.0 Consensus size: 44
8111546 TTACAGAAAT
**
8111556 GTAATTCATTTTCCAGAATTCAAATTCCAGTAATTCATTTTCCA
1 GTAATTCAAATTCCAGAATTCAAATTCCAGTAATTCATTTTCCA
8111600 GTAATTCAAATTCCAGTAATTCAAATTCCAGTAATTCATTTTC
1 GTAATTCAAATTCCAG-AATTCAAATTCCAGTAATTCATTTTC
8111643 TGGAAAACCA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 14 0.35
45 26 0.65
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (44 bp):
GTAATTCAAATTCCAGAATTCAAATTCCAGTAATTCATTTTCCA
Found at i:8115082 original size:22 final size:21
Alignment explanation
Indices: 8115053--8115095 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
8115043 CTGCTGAAAA
* *
8115053 TTTAATTTTTTTTTTATATAT
1 TTTAATTTTTTCTATATATAT
8115074 TTTAGATTTTTTCTATATATAT
1 TTTA-ATTTTTTCTATATATAT
8115096 ATATATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTAATTTTTTCTATATATAT
Found at i:8126163 original size:28 final size:28
Alignment explanation
Indices: 8126123--8126179 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
8126113 CCAAATAAAG
8126123 ATGCATAATGAGATAATAAGACATTGAA
1 ATGCATAATGAGATAATAAGACATTGAA
8126151 ATGCATAATGAGATAATAAGACATTGAA
1 ATGCATAATGAGATAATAAGACATTGAA
8126179 A
1 A
8126180 AAACTATCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.51, C:0.07, G:0.18, T:0.25
Consensus pattern (28 bp):
ATGCATAATGAGATAATAAGACATTGAA
Found at i:8133125 original size:93 final size:93
Alignment explanation
Indices: 8132956--8133140 Score: 210
Period size: 93 Copynumber: 2.0 Consensus size: 93
8132946 AAACCTCACC
* * * * *
8132956 AGCTACAGGAATTAACTTTCGTTCAACAGATGAACCTGCTGGAGGTGCAGCAGGCTTCACTCTAT
1 AGCTACAAGAATTAACTTCCGTTCAACAGATGAACCTGCTGGAGATGCAACAGGCTTCACTCCAT
* * * * *
8133021 CTTCTATATTCACACATGATGAGCCACT
66 CATCAACATTCACACAAGATGAACCACT
* * * * * *
8133049 AGCTACAAGAGTTAACTTCCTTTCAGCAGATGTACCTGTTGGAGATGCAACAGGCTT-ATTTCCA
1 AGCTACAAGAATTAACTTCCGTTCAACAGATGAACCTGCTGGAGATGCAACAGGCTTCA-CTCCA
8133113 TCATCAACATTCACACAAGATGAACCAC
65 TCATCAACATTCACACAAGATGAACCAC
8133141 CTTCATTAGT
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (93 bp):
AGCTACAAGAATTAACTTCCGTTCAACAGATGAACCTGCTGGAGATGCAACAGGCTTCACTCCAT
CATCAACATTCACACAAGATGAACCACT
Found at i:8142235 original size:24 final size:24
Alignment explanation
Indices: 8142206--8142272 Score: 125
Period size: 24 Copynumber: 2.8 Consensus size: 24
8142196 ACATTGCTTA
8142206 TTGTGCATGAGTCTGTTAGAGTTG
1 TTGTGCATGAGTCTGTTAGAGTTG
8142230 TTGTGCATGAGTCTGTTAGAGTTG
1 TTGTGCATGAGTCTGTTAGAGTTG
*
8142254 TTGTGCATGAGTTTGTTAG
1 TTGTGCATGAGTCTGTTAG
8142273 GCATCTATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.16, C:0.07, G:0.33, T:0.43
Consensus pattern (24 bp):
TTGTGCATGAGTCTGTTAGAGTTG
Found at i:8142871 original size:18 final size:19
Alignment explanation
Indices: 8142848--8142884 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
8142838 TTAAAATAAA
*
8142848 AAATGTTTA-AATTACAAT
1 AAATGTTTACAACTACAAT
8142866 AAATGTTTACAACTACAAT
1 AAATGTTTACAACTACAAT
8142885 TGTAAACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (19 bp):
AAATGTTTACAACTACAAT
Found at i:8143862 original size:20 final size:19
Alignment explanation
Indices: 8143833--8143875 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
8143823 GATAATCAAG
8143833 TTTA-TTTAAA-AAGTAAAT
1 TTTATTTTAAACAA-TAAAT
8143851 ATTTATTTTAAACAATAAAT
1 -TTTATTTTAAACAATAAAT
8143871 TTTAT
1 TTTAT
8143876 GAAAGTAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.41
20 11 0.50
21 2 0.09
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
TTTATTTTAAACAATAAAT
Found at i:8144789 original size:3 final size:3
Alignment explanation
Indices: 8144781--8144831 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
8144771 TTGACTATTT
*
8144781 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TC TTC TTC TTC TTA
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8144828 TTC T
1 TTC T
8144832 CCTCCTCCTC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:8148737 original size:16 final size:16
Alignment explanation
Indices: 8148718--8148751 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8148708 CAATATACGA
8148718 ATAAAAATATATTTAT
1 ATAAAAATATATTTAT
**
8148734 ATAAATGTATATTTAT
1 ATAAAAATATATTTAT
8148750 AT
1 AT
8148752 TTAGATGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAAAAATATATTTAT
Found at i:8148825 original size:16 final size:18
Alignment explanation
Indices: 8148793--8148826 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
8148783 TATTAATGTA
8148793 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
8148811 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
8148827 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:8151880 original size:12 final size:12
Alignment explanation
Indices: 8151863--8151894 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
8151853 GCTGAAGCAG
8151863 CTGCTTCTAGTT
1 CTGCTTCTAGTT
8151875 CTGCTTCTAGTT
1 CTGCTTCTAGTT
8151887 CTGCTTCT
1 CTGCTTCT
8151895 TTGACAGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.28, G:0.16, T:0.50
Consensus pattern (12 bp):
CTGCTTCTAGTT
Found at i:8151942 original size:30 final size:30
Alignment explanation
Indices: 8151906--8152037 Score: 156
Period size: 30 Copynumber: 4.4 Consensus size: 30
8151896 TGACAGCTAT
*
8151906 TGCACCTGCATCAACAGTCCAGTCTTCTAA
1 TGCACCTGCATCAACAGTCCAATCTTCTAA
*
8151936 TGCACCTGCATCAACGGTCCAATCTTCTAA
1 TGCACCTGCATCAACAGTCCAATCTTCTAA
** *
8151966 TGTGCCTGCATCAAAAGTCCAATCTTCTAA
1 TGCACCTGCATCAACAGTCCAATCTTCTAA
** * ** *
8151996 TGCAGTTTCATCAATGGTCCAATCTTCTCA
1 TGCACCTGCATCAACAGTCCAATCTTCTAA
*
8152026 TGCACCTTCATC
1 TGCACCTGCATC
8152038 TGCTGTCCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 86 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (30 bp):
TGCACCTGCATCAACAGTCCAATCTTCTAA
Found at i:8152046 original size:30 final size:29
Alignment explanation
Indices: 8151922--8152065 Score: 101
Period size: 30 Copynumber: 4.8 Consensus size: 29
8151912 TGCATCAACA
* * * *
8151922 GTCCAGTCTTCTAATGCACCTGCATCAACG
1 GTCCAATCTTCTCATGCACCTTCATC-ATG
* ** * **
8151952 GTCCAATCTTCTAATGTGCCTGCATCAAAA
1 GTCCAATCTTCTCATGCACCTTCATC-ATG
* **
8151982 GTCCAATCTTCTAATGCAGTTTCATCAATG
1 GTCCAATCTTCTCATGCACCTTCATC-ATG
8152012 GTCCAATCTTCTCATGCACCTTCATC-TG
1 GTCCAATCTTCTCATGCACCTTCATCATG
* *
8152040 CTGTCCAAACTTCTCATGTACCTTCA
1 --GTCCAATCTTCTCATGCACCTTCA
8152066 CCAACCCTCC
Statistics
Matches: 95, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
28 2 0.02
30 93 0.98
ACGTcount: A:0.24, C:0.31, G:0.12, T:0.33
Consensus pattern (29 bp):
GTCCAATCTTCTCATGCACCTTCATCATG
Found at i:8152047 original size:60 final size:60
Alignment explanation
Indices: 8151906--8152037 Score: 174
Period size: 60 Copynumber: 2.2 Consensus size: 60
8151896 TGACAGCTAT
* *
8151906 TGCACCTGCATCAACAGTCCAGTCTTCTAATGCACCTGCATCAACGGTCCAATCTTCTAA
1 TGCACCTGCATCAAAAGTCCAATCTTCTAATGCACCTGCATCAACGGTCCAATCTTCTAA
** ** * * *
8151966 TGTGCCTGCATCAAAAGTCCAATCTTCTAATGCAGTTTCATCAATGGTCCAATCTTCTCA
1 TGCACCTGCATCAAAAGTCCAATCTTCTAATGCACCTGCATCAACGGTCCAATCTTCTAA
*
8152026 TGCACCTTCATC
1 TGCACCTGCATC
8152038 TGCTGTCCAA
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (60 bp):
TGCACCTGCATCAAAAGTCCAATCTTCTAATGCACCTGCATCAACGGTCCAATCTTCTAA
Found at i:8155520 original size:19 final size:20
Alignment explanation
Indices: 8155496--8155537 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
8155486 TAATAAACAA
8155496 AAAATAATAATTTA-TATAT
1 AAAATAATAATTTATTATAT
* *
8155515 AAAATACTGATTTATTATAT
1 AAAATAATAATTTATTATAT
8155535 AAA
1 AAA
8155538 CATATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
AAAATAATAATTTATTATAT
Found at i:8163170 original size:13 final size:13
Alignment explanation
Indices: 8163152--8163177 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8163142 AGTTTTCATA
8163152 TAATTTTAATTTT
1 TAATTTTAATTTT
8163165 TAATTTTAATTTT
1 TAATTTTAATTTT
8163178 ATATTAATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TAATTTTAATTTT
Found at i:8165596 original size:35 final size:37
Alignment explanation
Indices: 8165550--8165681 Score: 159
Period size: 38 Copynumber: 3.6 Consensus size: 37
8165540 TTCATTGGCC
8165550 ATAGAAATAAATCAAATG-AA-AGGTTAGCTTAAAAG
1 ATAGAAATAAATCAAATGAAATAGGTTAGCTTAAAAG
8165585 ATAGAAATAAATCAAATGAAAGGTTAGGTTAGCTTAAAAG
1 ATAGAAATAAATCAAATGAAA---TAGGTTAGCTTAAAAG
8165625 AT-G-AATAAATCAAATGAAATGTTAGGTTAGCTTAAAAG
1 ATAGAAATAAATCAAATGAAA---TAGGTTAGCTTAAAAG
*
8165663 --AGTAATAAATCAAATGAAA
1 ATAGAAATAAATCAAATGAAA
8165682 GGTTAGTTTA
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
35 18 0.20
36 2 0.02
37 1 0.01
38 50 0.56
39 1 0.01
40 17 0.19
ACGTcount: A:0.52, C:0.05, G:0.17, T:0.25
Consensus pattern (37 bp):
ATAGAAATAAATCAAATGAAATAGGTTAGCTTAAAAG
Found at i:8165641 original size:38 final size:39
Alignment explanation
Indices: 8165570--8165687 Score: 195
Period size: 38 Copynumber: 3.1 Consensus size: 39
8165560 ATCAAATGAA
8165570 AGGTTAGCTTAAAAGATAGAAATAAATCAAATGAAAGGTT
1 AGGTTAGCTTAAAAGAT-GAAATAAATCAAATGAAAGGTT
*
8165610 AGGTTAGCTTAAAAGATG-AATAAATCAAATGAAATGTT
1 AGGTTAGCTTAAAAGATGAAATAAATCAAATGAAAGGTT
*
8165648 AGGTTAGCTTAAAAGA-GTAATAAATCAAATGAAAGGTT
1 AGGTTAGCTTAAAAGATGAAATAAATCAAATGAAAGGTT
8165686 AG
1 AG
8165688 TTTATGAGGG
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
37 1 0.01
38 56 0.75
39 1 0.01
40 17 0.23
ACGTcount: A:0.48, C:0.05, G:0.20, T:0.26
Consensus pattern (39 bp):
AGGTTAGCTTAAAAGATGAAATAAATCAAATGAAAGGTT
Found at i:8170030 original size:21 final size:20
Alignment explanation
Indices: 8170000--8170045 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
8169990 ATTTAAAAAA
* *
8170000 TAAAAGTATATAATTTATTTT
1 TAAAAGTATAAAATAT-TTTT
*
8170021 TAAAATTATAAAATATTTTT
1 TAAAAGTATAAAATATTTTT
8170041 TAAAA
1 TAAAA
8170046 CTACATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TAAAAGTATAAAATATTTTT
Found at i:8176724 original size:110 final size:110
Alignment explanation
Indices: 8176575--8177193 Score: 747
Period size: 110 Copynumber: 5.8 Consensus size: 110
8176565 AACGAGTTTT
* * * *
8176575 CTCCCTATTCGTTCAGGGAGTATA-AGACTCGAACAATCTTCAGCAAACGTGTCTGCTCCCTATT
1 CTCCCTATTCCTTCAGAGAGTATAGA-ACTCGAACAATCTTCAACAAACGTGTCCGCTCCCTATT
* * **
8176639 CATTCAGGGAGTATAGAACTCGAACAATCTTCATA-AAACGGGTCCG
65 CATTCAGAGAGTATAGAACTCGAACAATCTTCA-ACGAACTTGTCCG
* *
8176685 CTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCGCTCTCTATTC
1 CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCGCTCCCTATTC
* * **
8176750 CTTCAGAGAGTATAGAACTCGAACAATCTTC-ATGAAACGGGTCCG
66 ATTCAGAGAGTATAGAACTCGAACAATCTTCAACG-AACTTGTCCG
* * *
8176795 CTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACTTGTACGCTCCCTATTC
1 CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCGCTCCCTATTC
*
8176860 ATTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCG
66 ATTCAGAGAGTATAGAACTCGAACAATCTTCAACGAACTTGTCCG
* * * *
8176901 CTCCCTATTCCTTCAGAGAGTATAGGACTCGAGCAATCTTCATA-AAACGGGTCCGCTCTCTATT
1 CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCA-ACAAACGTGTCCGCTCCCTATT
*
8176965 CCTTCAGAGAGTATAGAACTCGAACAATCTTCAACGAACTTGTCCG
65 CATTCAGAGAGTATAGAACTCGAACAATCTTCAACGAACTTGTCCG
* * * *
8177011 CTCCCTATTTCTTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCGCTCCCTATTC
1 CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCGCTCCCTATTC
* *
8177072 ATTTAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCG
66 ATTCAGAGAGTATAGAACTCGAACAATCTTCAACGAACTTGTCCG
* * * *
8177113 CTCCCTATTCATTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCCGCTCCCTATTC
1 CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCGCTCCCTATTC
* *
8177174 TTTCAGAGAGTATAGGACTC
66 ATTCAGAGAGTATAGAACTC
8177194 AATCTTCAAC
Statistics
Matches: 460, Mismatches: 38, Indels: 29
0.87 0.07 0.06
Matches are distributed among these distances:
102 98 0.21
105 1 0.00
106 131 0.28
107 3 0.01
108 1 0.00
110 225 0.49
111 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (110 bp):
CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCGCTCCCTATTC
ATTCAGAGAGTATAGAACTCGAACAATCTTCAACGAACTTGTCCG
Found at i:8176904 original size:51 final size:52
Alignment explanation
Indices: 8176575--8177203 Score: 653
Period size: 55 Copynumber: 11.8 Consensus size: 52
8176565 AACGAGTTTT
* * * * * * *
8176575 CTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAGCAAACGTGTCTG
1 CTCCCTATTCCTTCAGAGAGTATAGGACT---ACAATCTTCAACGAACTTGTCCG
* * * * **
8176630 CTCCCTATTCATTCAGGGAGTATAGAACTCGAACAATCTTCATA-AAACGGGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGGACT---ACAATCTTCA-ACGAACTTGTCCG
* * * *
8176685 CTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGGACT---ACAATCTTCAACGAACTTGTCCG
* * * **
8176740 CTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTC-ATGAAACGGGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGGACT---ACAATCTTCAACG-AACTTGTCCG
* * * *
8176795 CTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACTTGTACG
1 CTCCCTATTCCTTCAGAGAGTATAGGACT---ACAATCTTCAACGAACTTGTCCG
*
8176850 CTCCCTATTCATTCAGAGAGTATAGGACT-CAATCTTCAACGAACTTGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGGACTACAATCTTCAACGAACTTGTCCG
* **
8176901 CTCCCTATTCCTTCAGAGAGTATAGGACTCGAGCAATCTTCATA-AAACGGGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGGACT--A-CAATCTTCA-ACGAACTTGTCCG
* *
8176956 CTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACGAACTTGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGGACT---ACAATCTTCAACGAACTTGTCCG
*
8177011 CTCCCTATTTCTTCAGAGAGTATAGGACT-CAATCTTCAACGAACTTGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGGACTACAATCTTCAACGAACTTGTCCG
* *
8177062 CTCCCTATTCATTTAGAGAGTATAGGACT-CAATCTTCAACGAACTTGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGGACTACAATCTTCAACGAACTTGTCCG
*
8177113 CTCCCTATTCATTCAGAGAGTATAGGACT-CAATCTTCAACGAACTTGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGGACTACAATCTTCAACGAACTTGTCCG
*
8177164 CTCCCTATTCTTTCAGAGAGTATAGGACT-CAATCTTCAAC
1 CTCCCTATTCCTTCAGAGAGTATAGGACTACAATCTTCAAC
8177204 AAACGAATTT
Statistics
Matches: 521, Mismatches: 42, Indels: 26
0.88 0.07 0.04
Matches are distributed among these distances:
51 207 0.40
54 3 0.01
55 308 0.59
56 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (52 bp):
CTCCCTATTCCTTCAGAGAGTATAGGACTACAATCTTCAACGAACTTGTCCG
Found at i:8178567 original size:16 final size:16
Alignment explanation
Indices: 8178525--8178560 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
8178515 CCTCCTTTTA
8178525 TTTCTCTTTTTTCATT
1 TTTCTCTTTTTTCATT
8178541 TTTCTCTTTTTTCATT
1 TTTCTCTTTTTTCATT
8178557 TTTC
1 TTTC
8178561 ATTTTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTCTCTTTTTTCATT
Done.