Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10075380
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 42
Found at i:1681410 original size:35 final size:35
Alignment explanation
Indices: 1681361--1681446 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 35
1681351 ATTGAAGTAT
** * *
1681361 TTTAGAATTTAATTGAAGTATTTTAGAATTTAGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
* * *
1681396 TTTAGAATAAAATTGAATTACTTTGGAAATTGGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
*
1681431 TTTAGAATGAAATTGA
1 TTTAGAATAAAATTGA
1681447 TGACTGTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.37, C:0.01, G:0.21, T:0.41
Consensus pattern (35 bp):
TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
Found at i:1681589 original size:31 final size:29
Alignment explanation
Indices: 1681551--1681621 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
1681541 TGTGGTTTAA
1681551 GTTGGGGGACCATATTGCAAACGGAATAAAT
1 GTTGGGGGACCATATTGC-AA-GGAATAAAT
** **
1681582 GTTGGGGGACTGTATTGCAAGGTTTAAAT
1 GTTGGGGGACCATATTGCAAGGAATAAAT
1681611 GTTGGGGGACC
1 GTTGGGGGACC
1681622 TAAATGCAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 17 0.49
30 2 0.06
31 16 0.46
ACGTcount: A:0.27, C:0.11, G:0.35, T:0.27
Consensus pattern (29 bp):
GTTGGGGGACCATATTGCAAGGAATAAAT
Found at i:1682731 original size:15 final size:15
Alignment explanation
Indices: 1682711--1682741 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1682701 TCTCAAGGTT
1682711 TAAAAATGACATAAA
1 TAAAAATGACATAAA
1682726 TAAAAATGACATAAA
1 TAAAAATGACATAAA
1682741 T
1 T
1682742 CGATCGCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (15 bp):
TAAAAATGACATAAA
Found at i:1684963 original size:19 final size:18
Alignment explanation
Indices: 1684939--1684974 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
1684929 TATTACTGTA
*
1684939 ATTATTATCTAATTTTTCT
1 ATTATTATAT-ATTTTTCT
1684958 ATTATTATATATTTTTC
1 ATTATTATATATTTTTC
1684975 CTCTCTCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTATTATATATTTTTCT
Found at i:1685074 original size:119 final size:122
Alignment explanation
Indices: 1684946--1685190 Score: 442
Period size: 125 Copynumber: 2.0 Consensus size: 122
1684936 GTAATTATTA
1684946 TCTAATTTTTC-TATTATTATATATTTTT-C-CTCTCTCATATTTAGCTATTATATATATATGGA
1 TCTAATTTTTCTTATTATTATATATTTTTCCTCTCTCTCATATTTAGCTATTATATATATATGGA
1685008 ATTAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTTACATT
66 ATTAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTTACATT
1685065 TCTAATTTTTCTATTATTATTATATATTTTTCCCTCTCTCTCATATTTAGCTATTATATATATAT
1 TCTAATTTTTC--TTATTATTATATATTTTT-CCTCTCTCTCATATTTAGCTATTATATATATAT
1685130 GGAATTAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTTACATT
63 GGAATTAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTTACATT
1685190 T
1 T
1685191 TTTATATACA
Statistics
Matches: 120, Mismatches: 0, Indels: 6
0.95 0.00 0.05
Matches are distributed among these distances:
119 11 0.09
122 17 0.14
124 1 0.01
125 91 0.76
ACGTcount: A:0.28, C:0.11, G:0.04, T:0.56
Consensus pattern (122 bp):
TCTAATTTTTCTTATTATTATATATTTTTCCTCTCTCTCATATTTAGCTATTATATATATATGGA
ATTAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTTACATT
Found at i:1695872 original size:13 final size:13
Alignment explanation
Indices: 1695854--1695879 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1695844 GTCCTAAGTT
1695854 GAAAAAAAAAAGA
1 GAAAAAAAAAAGA
1695867 GAAAAAAAAAAGA
1 GAAAAAAAAAAGA
1695880 ACGTTTAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
GAAAAAAAAAAGA
Found at i:1696854 original size:105 final size:105
Alignment explanation
Indices: 1696672--1697340 Score: 1223
Period size: 105 Copynumber: 6.4 Consensus size: 105
1696662 AGGTTTTACC
1696672 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1696737 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
1696777 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTACAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
1696842 ATGAAGGGACCGCTGGTTGTCGACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
1696882 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
1696947 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
1696987 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGATTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1697052 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
1697092 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
1697157 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
**
1697197 CAGAGCCAATTTCTGCTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1697262 ACGAAGGGACCGCTGGTTGTCAACAAACA-TTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
1697301 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
1697341 GAAACAACAC
Statistics
Matches: 546, Mismatches: 18, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
104 48 0.09
105 498 0.91
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
Found at i:1698925 original size:19 final size:18
Alignment explanation
Indices: 1698901--1698936 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
1698891 TATTACTGTA
*
1698901 ATTATTATCTAATTTTTCT
1 ATTATTATAT-ATTTTTCT
1698920 ATTATTATATATTTTTC
1 ATTATTATATATTTTTC
1698937 CCTCTCTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTATTATATATTTTTCT
Found at i:1699113 original size:121 final size:119
Alignment explanation
Indices: 1698908--1699148 Score: 448
Period size: 121 Copynumber: 2.0 Consensus size: 119
1698898 GTAATTATTA
1698908 TCTAATTTTTCTATTATTATATATTTTTCCCTCTCTCTCATATTTAGCTATTATATATATGGAAT
1 TCTAATTTTTCTATTATTATATATTTTTCCCTCTCTCTCATATTTAGCTATTATATATATGGAAT
1698973 TAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTACATT
66 TAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTACATT
1699027 TCTAATTTTTCTATTATTATTATATATTTTTCCCTCTCTCTCATATTTAGCTA-TATATATATGG
1 TCTAATTTTTC---TATTATTATATATTTTTCCCTCTCTCTCATATTTAGCTATTATATATATGG
1699091 AATTAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTACATT
63 AATTAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTACATT
1699148 T
1 T
1699149 TTTATATACA
Statistics
Matches: 119, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
119 11 0.09
121 69 0.58
122 39 0.33
ACGTcount: A:0.28, C:0.12, G:0.04, T:0.56
Consensus pattern (119 bp):
TCTAATTTTTCTATTATTATATATTTTTCCCTCTCTCTCATATTTAGCTATTATATATATGGAAT
TAATATTATTATATGTTTTTTATTAATTTTACCTTATACGCTATTATTTACATT
Found at i:1705915 original size:23 final size:24
Alignment explanation
Indices: 1705870--1705915 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
1705860 TTTGTTTTTC
*
1705870 AAAATCTATTTTTACTTTCAAAAG
1 AAAATCTATTTTAACTTTCAAAAG
1705894 AAAATC-ATTTTCAACTTT-AAAA
1 AAAATCTATTTT-AACTTTCAAAA
1705916 TTTGAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.39
Consensus pattern (24 bp):
AAAATCTATTTTAACTTTCAAAAG
Found at i:1706293 original size:21 final size:21
Alignment explanation
Indices: 1706273--1706311 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1706263 CTCATATCAT
*
1706273 TCTTTTTC-TTGTTCTTCTCA
1 TCTTTTTCTTTCTTCTTCTCA
1706293 TCTTTTTCTTTCTTCTTCT
1 TCTTTTTCTTTCTTCTTCT
1706312 TATGGAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.03, C:0.26, G:0.03, T:0.69
Consensus pattern (21 bp):
TCTTTTTCTTTCTTCTTCTCA
Found at i:1709240 original size:3 final size:3
Alignment explanation
Indices: 1709234--1709274 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
1709224 GTTGTTTACT
1709234 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1709275 CAACCATTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1711568 original size:41 final size:42
Alignment explanation
Indices: 1711502--1711743 Score: 224
Period size: 42 Copynumber: 5.8 Consensus size: 42
1711492 AAAATGGGCT
* ** * *
1711502 TTTAGCGGCGTTTTTTGAACAAACGCCGGTAAATACTCGTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAATACTCGTAC
* * * * *
1711544 TTTAGTGGTGTTTTTA-TATAAACGCCGCTAATTACT-ATAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAATACTCGTAC
* * * *
1711584 TTTAGCGGCGTTTT-TGTACAAACGCTGCTAAAAACTCGTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAATACTCGTAC
* * * * *
1711625 TTTAGCGGCGTTTTAAGCACAATCGCCTCTAAAGT-CCCGTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAA-TACTCGTAC
* * *
1711667 ATTAGCT-GTGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
1 TTTAG-TGGCGTTTTAAGTACAAACGCCGCTAAATACTCGTAC
*
1711709 TTTAGTGGCGTTTTAAGCACAAACGCCGCTAAATA
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAATA
1711744 TTTAGTCTTT
Statistics
Matches: 158, Mismatches: 35, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
40 31 0.20
41 34 0.22
42 93 0.59
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (42 bp):
TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAATACTCGTAC
Found at i:1714705 original size:43 final size:43
Alignment explanation
Indices: 1714683--1714941 Score: 349
Period size: 43 Copynumber: 6.0 Consensus size: 43
1714673 CAAATGACAT
* * * ** *
1714683 TAAATATACAGTCAATAGCGGCGTTTGTAAAGAAAAATGTTGT
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGACAAACGCCGC
* *
1714726 TAAATACACAGTCAATAACGGCATTTGTAAAGACAAACGCCGC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGACAAACGCCGC
*
1714769 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGACAAACGCCGC
* * * *
1714812 TAAATACACATTCAATAGCGGCGTTTGTAAA-AAAAACACCAC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGACAAACGCCGC
* *
1714854 TAAATGCACAGTCAATAGCGGCGTTTGTAAAGAAAAACGCCGC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGACAAACGCCGC
* **
1714897 TAAATACACAGTCAATAGCGACGTTTAAAAAGACAAACGCCGC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGACAAACGCCGC
1714940 TA
1 TA
1714942 TATGTCTCGA
Statistics
Matches: 190, Mismatches: 25, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
42 37 0.19
43 153 0.81
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (43 bp):
TAAATACACAGTCAATAGCGGCGTTTGTAAAGACAAACGCCGC
Found at i:1714885 original size:85 final size:86
Alignment explanation
Indices: 1714683--1714922 Score: 338
Period size: 85 Copynumber: 2.8 Consensus size: 86
1714673 CAAATGACAT
* * ** * *
1714683 TAAATATACAGTCAATAGCGGCGTTTGTAAAGAAAAATGTTGTTAAATACACAGTCAATAACGGC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGGC
* * * *
1714748 ATTTGTAAAGACAAACGCCGC
66 GTTTGTAAAGAAAAACACCAC
* * *
1714769 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGCTAAATACACATTCAATAGCGGC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGGC
1714834 GTTTGTAAA-AAAAACACCAC
66 GTTTGTAAAGAAAAACACCAC
* *
1714854 TAAATGCACAGTCAATAGCGGCGTTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGAC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGGC
1714919 GTTT
66 GTTT
1714923 AAAAAGACAA
Statistics
Matches: 136, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
85 72 0.53
86 64 0.47
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (86 bp):
TAAATACACAGTCAATAGCGGCGTTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGGC
GTTTGTAAAGAAAAACACCAC
Found at i:1714895 original size:128 final size:129
Alignment explanation
Indices: 1714683--1714941 Score: 385
Period size: 128 Copynumber: 2.0 Consensus size: 129
1714673 CAAATGACAT
* ******
1714683 TAAATATACAGTCAATAGCGGCGTTTGTAAAGAAAAATGTTGTTAAATACACAGTCAATAACGGC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGAAAAACACCACTAAATACACAGTCAATAACGGC
* * *
1714748 ATTTGTAAAGACAAACGCCGCTAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
66 ATTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGACGTTTAAAAAGACAAACGCCGC
* * *
1714812 TAAATACACATTCAATAGCGGCGTTTGTAAA-AAAAACACCACTAAATGCACAGTCAATAGCGGC
1 TAAATACACAGTCAATAGCGGCGTTTGTAAAGAAAAACACCACTAAATACACAGTCAATAACGGC
*
1714876 GTTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGACGTTTAAAAAGACAAACGCCGC
66 ATTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGACGTTTAAAAAGACAAACGCCGC
1714940 TA
1 TA
1714942 TATGTCTCGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
128 87 0.75
129 29 0.25
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (129 bp):
TAAATACACAGTCAATAGCGGCGTTTGTAAAGAAAAACACCACTAAATACACAGTCAATAACGGC
ATTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGACGTTTAAAAAGACAAACGCCGC
Found at i:1714971 original size:128 final size:129
Alignment explanation
Indices: 1714726--1714985 Score: 355
Period size: 128 Copynumber: 2.0 Consensus size: 129
1714716 AAAATGTTGT
* *
1714726 TAAATACACAGTCAATAACGGCATTTGTAAAGACAAACGCCGCTAAATACACAGTCAATAGCGGC
1 TAAATACACAGTCAATAACGGCATTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGAC
* * *
1714791 GTTTATAAAGACAAACGCCGCTAAATACACATTCAATAGCGGCGTTTGT-AAAAAAAACACCAC
66 GTTTAAAAAGACAAACGCCGCTAAATACACATCCAATAGCGGCATTTGTAAAAAAAAACACCAC
* * *
1714854 TAAATGCACAGTCAATAGCGGCGTTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGAC
1 TAAATACACAGTCAATAACGGCATTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGAC
* * * * * *
1714919 GTTTAAAAAGACAAACGCCGCTATATGTCTCGA-CCTATTGCGGCATTT-TAAAAAAAAACGCCA
66 GTTTAAAAAGACAAACGCCGCTAAAT-ACAC-ATCCAATAGCGGCATTTGTAAAAAAAAACACCA
1714982 C
129 C
1714983 TAA
1 TAA
1714986 CAATTGCGGC
Statistics
Matches: 115, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
128 85 0.74
129 29 0.25
130 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (129 bp):
TAAATACACAGTCAATAACGGCATTTGTAAAGAAAAACGCCGCTAAATACACAGTCAATAGCGAC
GTTTAAAAAGACAAACGCCGCTAAATACACATCCAATAGCGGCATTTGTAAAAAAAAACACCAC
Found at i:1715435 original size:53 final size:52
Alignment explanation
Indices: 1715369--1715476 Score: 162
Period size: 53 Copynumber: 2.1 Consensus size: 52
1715359 GTGACATGAA
* * *
1715369 TTTTTACTATTGATTATGCATATTTGTATTACTGAAATTTTATATTTGGTGT
1 TTTTTACAATTGATTAAGCATATTTGTATTACTGAAATTTTATATTTGGTAT
* *
1715421 TTTTATACAATTGATTAAGCATATTTGTATTGCTGAAATTTTATCTTTGGTAT
1 TTTT-TACAATTGATTAAGCATATTTGTATTACTGAAATTTTATATTTGGTAT
1715474 TTT
1 TTT
1715477 CATATAGTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
52 4 0.08
53 46 0.92
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.55
Consensus pattern (52 bp):
TTTTTACAATTGATTAAGCATATTTGTATTACTGAAATTTTATATTTGGTAT
Found at i:1719596 original size:60 final size:60
Alignment explanation
Indices: 1719526--1719703 Score: 275
Period size: 60 Copynumber: 3.0 Consensus size: 60
1719516 ATAATCAGGT
* * * *
1719526 GACTATTTTATAACTTTTAATAATTGGAAGACTCAACAAAATAATATTTTATAATTAAAG
1 GACTATTTTATAACTTTTAATAGTCGGAATACTCAACAAAATAATATCTTATAATTAAAG
*
1719586 GACTACTTTATAACTTTTAATAGTCGGAATACTCAACAAAATAATATCTTATAATTAAAG
1 GACTATTTTATAACTTTTAATAGTCGGAATACTCAACAAAATAATATCTTATAATTAAAG
* * * *
1719646 GACTATTTTATAATTTTTAATAGTCGAAATACTCAACAAAACAATGTCTTATAATTAA
1 GACTATTTTATAACTTTTAATAGTCGGAATACTCAACAAAATAATATCTTATAATTAA
1719704 TATTTCAAAA
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 108 1.00
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.37
Consensus pattern (60 bp):
GACTATTTTATAACTTTTAATAGTCGGAATACTCAACAAAATAATATCTTATAATTAAAG
Found at i:1721065 original size:16 final size:16
Alignment explanation
Indices: 1721044--1721081 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
1721034 AAAAATAATT
1721044 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
1721060 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
1721076 T-ATAAA
1 TAATAAA
1721082 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:1721191 original size:18 final size:21
Alignment explanation
Indices: 1721163--1721208 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 21
1721153 TTAAAAAAAT
*
1721163 TAAAAATAAATATAAAAT-ATAA
1 TAAAAAT--ATATATAATGATAA
1721185 TAAAAATATATATAATGATAA
1 TAAAAATATATATAATGATAA
1721206 TAA
1 TAA
1721209 TAGTAGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
21 7 0.32
22 7 0.32
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (21 bp):
TAAAAATATATATAATGATAA
Found at i:1722716 original size:105 final size:105
Alignment explanation
Indices: 1722409--1723069 Score: 926
Period size: 105 Copynumber: 6.3 Consensus size: 105
1722399 CATTGTTCCA
* * *
1722409 AGTCCAATATCC-TCCTTCGTGAAGTTGAAATTGGCTATG-GAACCGGGAAA-TTGTTTGTTGAC
1 AGTCCAATATCCTTCGTT-GTGAAGTTGAAATTGGCTCTGAGAA--TGGAAAGTTG-TTGTTGAC
* * * *
1722471 AACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
62 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
** *
1722515 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGAATCT--GAAT-GAAA-TT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGAATGGAAAGTTGTTGTTGACAACC
1722575 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
1722615 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGAATGGAAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGAATGGAAAGTTGTTGTTGACAACC
*
1722680 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
1722720 AGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGAATGGAAAGTTGTTGTTGACAACC
1722785 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
1722825 AGTCCAATATCCTTTGCTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGAATGGAAAGTTGTTGTTGACAACC
*
1722890 AGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
1722930 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA-AATTGAGAAGTTGTTTGTTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGAATGGA-AAGTTG-TTGTTGACAA
* * * *
1722994 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
64 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
1723036 AGTGCCACGATATCCTCCGTCGTGGAGTTGAAAT
1 AGT-CCA--ATATCCTTCGTTGTGAAGTTGAAAT
1723070 CGCGGATGAC
Statistics
Matches: 509, Mismatches: 35, Indels: 19
0.90 0.06 0.03
Matches are distributed among these distances:
100 83 0.16
102 10 0.02
103 4 0.01
104 5 0.01
105 299 0.59
106 79 0.16
107 7 0.01
109 22 0.04
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.33
Consensus pattern (105 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGAATGGAAAGTTGTTGTTGACAACC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:1723983 original size:67 final size:67
Alignment explanation
Indices: 1723903--1724061 Score: 214
Period size: 67 Copynumber: 2.4 Consensus size: 67
1723893 GAAACGAAAT
* * *
1723903 TTTGTTTTAAGGGAGATA-AAT-TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCATGGGAGAC
1 TTTGTTTCAAGGGA-A-ACAATCTCAAAGATTTTGTGTTTCAAGAGAAACCGTCTCAAGGGAGAC
1723966 AAAA
64 AAAA
* * *
1723970 TTTGTTTCGAGGGAAACAATCTCAAAGGTTTTGTGTTTCAAGAGAAGCCGTCTCAAGGGAGACAA
1 TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACCGTCTCAAGGGAGACAA
1724035 AA
66 AA
**
1724037 TTTGTTTCAAGGGAAATTATCTCAA
1 TTTGTTTCAAGGGAAACAATCTCAA
1724062 GAGAGACGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 4 0.05
67 76 0.94
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (67 bp):
TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACCGTCTCAAGGGAGACAA
AA
Found at i:1724060 original size:36 final size:36
Alignment explanation
Indices: 1724020--1724089 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
1724010 AGAGAAGCCG
* **
1724020 TCTCAAGGGAGACAAAATTTGTTTCAAGGGAAATTA
1 TCTCAAGAGAGACAAAATTCATTTCAAGGGAAATTA
* *
1724056 TCTCAAGAGAGACGAAATTCATTTCTAGGGAAAT
1 TCTCAAGAGAGACAAAATTCATTTCAAGGGAAAT
1724090 GTTTTCAATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (36 bp):
TCTCAAGAGAGACAAAATTCATTTCAAGGGAAATTA
Found at i:1724155 original size:37 final size:37
Alignment explanation
Indices: 1724114--1724412 Score: 237
Period size: 37 Copynumber: 8.6 Consensus size: 37
1724104 TGTTTCAGAA
*
1724114 GAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
* **
1724151 GAAACTATCTCAAGAGAGACAAAA-TTCATTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
* ** *
1724187 GAAA-TGTTTC--------CAATGTTTATGTTTCAAGA
1 GAAACTGTCTCAAGAGAGACAAAATTT-TGTTTCAAGG
* *
1724216 GAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
* * **
1724253 GAAACTATCTCAAGAGAGACAAAA-CTCATTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
* * *
1724289 GAAA-TGTTTTC-A-A-TG------TTTATGTTTCAAGA
1 GAAACTG-TCTCAAGAGAGACAAAATTT-TGTTTCAAGG
* *
1724318 GAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
*
1724355 GAAACTGTCTCAAGAGAGAC-AAAGTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
1724391 GAAACTGTCTCAAGAGAGACAA
1 GAAACTGTCTCAAGAGAGACAA
1724413 TGGTGAGCAC
Statistics
Matches: 201, Mismatches: 36, Indels: 50
0.70 0.13 0.17
Matches are distributed among these distances:
27 3 0.01
28 3 0.01
29 25 0.12
30 8 0.04
32 1 0.00
33 1 0.00
34 1 0.00
35 6 0.03
36 65 0.32
37 80 0.40
38 8 0.04
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.27
Consensus pattern (37 bp):
GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAGG
Found at i:1724167 original size:102 final size:102
Alignment explanation
Indices: 1724003--1724394 Score: 644
Period size: 102 Copynumber: 3.9 Consensus size: 102
1723993 AAAGGTTTTG
* * * *
1724003 TGTTTCAAGAGAAGCCGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAATTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
* *
1724067 ACGAAATTCATTTCTAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
1724104 TGTTTC-AGAAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGA
1 TGTTTCAAG-AGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGA
*
1724168 GACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
65 GACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1724206 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
1724271 ACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
1724308 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
* **
1724373 ACAAAGTTTGTTTCAAGGGAAA
66 ACAAAATTCATTTCAAGGGAAA
1724395 CTGTCTCAAG
Statistics
Matches: 274, Mismatches: 14, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
100 2 0.01
101 29 0.11
102 241 0.88
103 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (102 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:1725316 original size:22 final size:22
Alignment explanation
Indices: 1725291--1725341 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
1725281 TTGTGTTTGG
1725291 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
1725313 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
1725335 TCAAAGG
1 TCAAAGG
1725342 ATTGATGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:1726012 original size:22 final size:21
Alignment explanation
Indices: 1725952--1726005 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1725942 TTGTCCCCTT
* * *
1725952 TTTTTTATTTTTGTTCTTT-C
1 TTTTTTGTTCTTGTTTTTTCC
1725972 TTTTTTGTTCTTGTTTTTTCC
1 TTTTTTGTTCTTGTTTTTTCC
1725993 TTTTTTGCTTCTT
1 TTTTTTG-TTCTT
1726006 TTCTTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 16 0.55
21 8 0.28
22 5 0.17
ACGTcount: A:0.02, C:0.13, G:0.07, T:0.78
Consensus pattern (21 bp):
TTTTTTGTTCTTGTTTTTTCC
Found at i:1729366 original size:21 final size:24
Alignment explanation
Indices: 1729330--1729389 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
1729320 ATATATATAT
* *
1729330 ATAATAAATATAATAACG-AAAA-A
1 ATAAT-AATGTAATAAAGTAAAATA
*
1729353 A-AATAATTTAATAAAGTAAAATA
1 ATAATAATGTAATAAAGTAAAATA
1729376 ATAATAATGTAATA
1 ATAATAATGTAATA
1729390 TAATATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 10 0.32
22 7 0.23
23 3 0.10
24 11 0.35
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (24 bp):
ATAATAATGTAATAAAGTAAAATA
Found at i:1729382 original size:16 final size:16
Alignment explanation
Indices: 1729361--1729398 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
1729351 AAAAATAATT
1729361 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
1729377 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
1729393 T-ATAAA
1 TAATAAA
1729399 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:1729587 original size:21 final size:23
Alignment explanation
Indices: 1729563--1729608 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
1729553 ATTTATACGT
1729563 TAATAG-TAAAAATA-ATAAATA
1 TAATAGTTAAAAATATATAAATA
* *
1729584 TAATAGTTATAAATATATATATA
1 TAATAGTTAAAAATATATAAATA
1729607 TA
1 TA
1729609 TATAATAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 7 0.33
23 8 0.38
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATAGTTAAAAATATATAAATA
Found at i:1731979 original size:3 final size:3
Alignment explanation
Indices: 1731973--1732048 Score: 77
Period size: 3 Copynumber: 26.0 Consensus size: 3
1731963 CATTTTGTTT
** * *
1731973 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA ATA TT- GTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
*
1732021 TTA TTA -TA TTA TTA TTA -AA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1732049 CAAACAGGCC
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
2 4 0.07
3 52 0.88
4 3 0.05
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:1731999 original size:21 final size:21
Alignment explanation
Indices: 1731973--1732048 Score: 88
Period size: 21 Copynumber: 3.7 Consensus size: 21
1731963 CATTTTGTTT
*
1731973 TTATTATTATTATTAAAATTA
1 TTATTATTATTATTAATATTA
1731994 TTATTATTATTATTAATATT-
1 TTATTATTATTATTAATATTA
*
1732014 GTA-TA-TATTATT-ATATTA
1 TTATTATTATTATTAATATTA
1732032 TTATTAAATTATTATTA
1 TTATT--ATTATTATTA
1732049 CAAACAGGCC
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
17 5 0.11
18 9 0.20
19 3 0.07
20 2 0.04
21 20 0.43
22 7 0.15
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (21 bp):
TTATTATTATTATTAATATTA
Found at i:1733361 original size:26 final size:28
Alignment explanation
Indices: 1733305--1733363 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
1733295 TTATTTGCAA
* *
1733305 TATTATTTTATTATTATTATTGCTTTAAT
1 TATTATTTCATTATTATTATT-CTCTAAT
1733334 TATTATTTCATTATTATTATT-TCT-AT
1 TATTATTTCATTATTATTATTCTCTAAT
1733360 TATT
1 TATT
1733364 TATATAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 6 0.21
27 2 0.07
29 20 0.71
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (28 bp):
TATTATTTCATTATTATTATTCTCTAAT
Found at i:1739525 original size:27 final size:26
Alignment explanation
Indices: 1739476--1739529 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
1739466 TCATATACTC
*
1739476 ATCCAACAAAGAAAGAAAAAAGAAAA
1 ATCCAACAAAAAAAGAAAAAAGAAAA
1739502 ATCCAACAAAAAAAAGAAAAAAGAAAA
1 ATCCAAC-AAAAAAAGAAAAAAGAAAA
1739529 A
1 A
1739530 AAAAAGGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.76, C:0.11, G:0.09, T:0.04
Consensus pattern (26 bp):
ATCCAACAAAAAAAGAAAAAAGAAAA
Found at i:1744317 original size:22 final size:22
Alignment explanation
Indices: 1744292--1744368 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
1744282 ATCTACACTC
*
1744292 TTCAAAGATGATAGATTCTATT
1 TTCAAAGATGATAGATTCTCTT
1744314 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
* *
1744336 TTTAAAGATGATATATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
1744358 TTCAAAGATGA
1 TTCAAAGATGA
1744369 AAGCTTTATT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:1745316 original size:75 final size:75
Alignment explanation
Indices: 1745045--1745752 Score: 1218
Period size: 75 Copynumber: 9.4 Consensus size: 75
1745035 CTATTTCCCA
* *
1745045 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGATCTTTTTGATGTTTTTAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1745110 AGCCTTAGGGT
66 A-CCTTCGGGT
1745121 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1745186 AGCCTTAGGGT
66 A-CCTTCGGGT
*
1745197 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1745262 ACCTTCGGGT
66 ACCTTCGGGT
*
1745272 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1745337 ACCTTCGGGT
66 ACCTTCGGGT
*
1745347 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1745412 ACCTTCGGGT
66 ACCTTCGGGT
*
1745422 CATCTGTAAGTCATGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1745487 ACCTTCGGGT
66 ACCTTCGGGT
* * *
1745497 CATTTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCTTTCGGGGGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1745562 ACTTTCGGGT
66 ACCTTCGGGT
1745572 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1745637 ACCTTCGGGT
66 ACCTTCGGGT
* *
1745647 CATCTGTAAGTCCTGCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTTAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1745712 AGCCTTAGGGT
66 A-CCTTCGGGT
* * * *
1745723 CATCCGTAAGTCCTACAGTACATGGTGTTT
1 CATCTGTAAGTCCTGCAGTGCATGATGTTT
1745753 TTAGGACCTC
Statistics
Matches: 609, Mismatches: 22, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
75 436 0.72
76 173 0.28
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (75 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
ACCTTCGGGT
Found at i:1745917 original size:3 final size:3
Alignment explanation
Indices: 1745905--1745967 Score: 69
Period size: 3 Copynumber: 22.0 Consensus size: 3
1745895 TTTTTTCATT
* **
1745905 TTA TTT TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA -TA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
1745951 TTA TTA -AA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
1745968 CAAATAAGCC
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
2 5 0.10
3 44 0.90
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:1745946 original size:11 final size:12
Alignment explanation
Indices: 1745905--1745967 Score: 69
Period size: 11 Copynumber: 5.5 Consensus size: 12
1745895 TTTTTTCATT
*
1745905 TTATTTTTATTA
1 TTATTATTATTA
**
1745917 TTATTATTAAAA
1 TTATTATTATTA
1745929 TTATTATTATTA
1 TTATTATTATTA
1745941 -TATTA-TATTA
1 TTATTATTATTA
*
1745951 TTATTA-AATTA
1 TTATTATTATTA
1745962 TTATTA
1 TTATTA
1745968 CAAATAAGCC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
10 5 0.11
11 20 0.45
12 19 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATTATTATTA
Found at i:1746981 original size:2 final size:2
Alignment explanation
Indices: 1746974--1747001 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1746964 CCTTATCAGC
1746974 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1747002 TTAGGTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1747286 original size:14 final size:14
Alignment explanation
Indices: 1747246--1747287 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
1747236 CAATATTATT
* *
1747246 TTATTATTATTGCT
1 TTATTATTATTTCA
1747260 TTAATTATTATTTCA
1 TT-ATTATTATTTCA
1747275 TTATTATTATTTC
1 TTATTATTATTTC
1747288 TATCATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.64
Consensus pattern (14 bp):
TTATTATTATTTCA
Found at i:1750240 original size:31 final size:32
Alignment explanation
Indices: 1750181--1750245 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
1750171 AACAACCGAT
*
1750181 ATCTTAATTAAAACGAAACGAAAAGTGATCAA
1 ATCTTAATTAAAACAAAACGAAAAGTGATCAA
* * *
1750213 ATCTTAATTAAAATAAAATG-AAAGTGATGAA
1 ATCTTAATTAAAACAAAACGAAAAGTGATCAA
1750244 AT
1 AT
1750246 TATTTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 12 0.41
32 17 0.59
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.26
Consensus pattern (32 bp):
ATCTTAATTAAAACAAAACGAAAAGTGATCAA
Found at i:1755295 original size:35 final size:34
Alignment explanation
Indices: 1755210--1755296 Score: 97
Period size: 35 Copynumber: 2.5 Consensus size: 34
1755200 AAAATAATTT
*
1755210 TAAATACAACAAACTTACAATAAGTATTAAATGG
1 TAAATACAACAAAATTACAATAAGTATTAAATGG
* *
1755244 TAAATGATAACCAAATTACAATAACTGATATTAAATGG
1 TAAAT-ACAACAAAATTACAATAA--G-TATTAAATGG
1755282 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
1755297 ACTGAAATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
34 5 0.11
35 24 0.53
36 1 0.02
37 4 0.09
38 11 0.24
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.28
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGTATTAAATGG
Found at i:1757569 original size:20 final size:20
Alignment explanation
Indices: 1757530--1757569 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
1757520 TGTAAAAAAT
**
1757530 TAATTAAATAAAATGTTAAA
1 TAATTAAATAAAATACTAAA
*
1757550 TAATTAAATAAATTACTAAA
1 TAATTAAATAAAATACTAAA
1757570 AAATACTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (20 bp):
TAATTAAATAAAATACTAAA
Found at i:1758068 original size:13 final size:13
Alignment explanation
Indices: 1758048--1758092 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
1758038 ATTATATATC
1758048 TAATTTTTATTAA
1 TAATTTTTATTAA
* **
1758061 TTATTTTTAACAA
1 TAATTTTTATTAA
1758074 TAATTTTTTATTAA
1 TAA-TTTTTATTAA
1758088 TAATT
1 TAATT
1758093 AATTTTATTG
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (13 bp):
TAATTTTTATTAA
Found at i:1758089 original size:14 final size:14
Alignment explanation
Indices: 1758051--1758092 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
1758041 ATATATCTAA
*
1758051 TTTTTATTAATTA-
1 TTTTTATTAATAAT
**
1758064 TTTTTAACAATAAT
1 TTTTTATTAATAAT
1758078 TTTTTATTAATAAT
1 TTTTTATTAATAAT
1758092 T
1 T
1758093 AATTTTATTG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTTTATTAATAAT
Found at i:1764027 original size:17 final size:18
Alignment explanation
Indices: 1763989--1764030 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
1763979 TCATTTCATC
1763989 TTTTATTTTAAACCCAAT
1 TTTTATTTTAAACCCAAT
1764007 TTTTATTTTAAACCCAAT
1 TTTTATTTTAAACCCAAT
1764025 TTTTAT
1 TTTTAT
1764031 CAACTTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTTATTTTAAACCCAAT
Found at i:1766031 original size:7 final size:7
Alignment explanation
Indices: 1766021--1766045 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
1766011 ATTTAAGCAT
1766021 TAATAAA
1 TAATAAA
1766028 TAATAAA
1 TAATAAA
1766035 TAATAAA
1 TAATAAA
1766042 TAAT
1 TAAT
1766046 TATACATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
TAATAAA
Found at i:1782518 original size:22 final size:23
Alignment explanation
Indices: 1782475--1782518 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
1782465 CATATAATTA
**
1782475 TAAATTAGTTAAAAATCTAAATG
1 TAAATTAGTTAAAAATAAAAATG
*
1782498 TAAATTA-TTTAAAATAAAAAT
1 TAAATTAGTTAAAAATAAAAAT
1782519 TAATTACATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (23 bp):
TAAATTAGTTAAAAATAAAAATG
Found at i:1787960 original size:89 final size:89
Alignment explanation
Indices: 1787809--1787987 Score: 358
Period size: 89 Copynumber: 2.0 Consensus size: 89
1787799 GCATCGTGTG
1787809 ACCACATTTCATTACTGTGGTATCTTTCAATGAATCGAATAGGTACTGGGGAAACAAAAGGATGG
1 ACCACATTTCATTACTGTGGTATCTTTCAATGAATCGAATAGGTACTGGGGAAACAAAAGGATGG
1787874 ACTATTAGCAATATACAAATACAT
66 ACTATTAGCAATATACAAATACAT
1787898 ACCACATTTCATTACTGTGGTATCTTTCAATGAATCGAATAGGTACTGGGGAAACAAAAGGATGG
1 ACCACATTTCATTACTGTGGTATCTTTCAATGAATCGAATAGGTACTGGGGAAACAAAAGGATGG
1787963 ACTATTAGCAATATACAAATACAT
66 ACTATTAGCAATATACAAATACAT
1787987 A
1 A
1787988 TAAATACAAT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (89 bp):
ACCACATTTCATTACTGTGGTATCTTTCAATGAATCGAATAGGTACTGGGGAAACAAAAGGATGG
ACTATTAGCAATATACAAATACAT
Found at i:1814349 original size:24 final size:24
Alignment explanation
Indices: 1814317--1814368 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
1814307 GATTAGAAGG
*
1814317 TTAACTTTATTTTCAGTTAATTCT
1 TTAACTTTATTTTAAGTTAATTCT
1814341 TTAACTTTATTTTAAGTTAATTCT
1 TTAACTTTATTTTAAGTTAATTCT
1814365 TTAA
1 TTAA
1814369 ATTCCTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (24 bp):
TTAACTTTATTTTAAGTTAATTCT
Found at i:1814916 original size:11 final size:11
Alignment explanation
Indices: 1814896--1814941 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
1814886 AGTAACCAAC
1814896 AACT-ATAACA
1 AACTAATAACA
1814906 AACTAATAAC-
1 AACTAATAACA
*
1814916 AATTAATAACA
1 AACTAATAACA
* *
1814927 AGCTAAAAACA
1 AACTAATAACA
1814938 AACT
1 AACT
1814942 CGAACATTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
10 13 0.45
11 16 0.55
ACGTcount: A:0.61, C:0.17, G:0.02, T:0.20
Consensus pattern (11 bp):
AACTAATAACA
Found at i:1816744 original size:11 final size:11
Alignment explanation
Indices: 1816724--1816779 Score: 73
Period size: 10 Copynumber: 5.4 Consensus size: 11
1816714 AGAAACCAAC
1816724 AACT-ATAACA
1 AACTAATAACA
1816734 AACTAATAAC-
1 AACTAATAACA
1816744 AACTAATAACA
1 AACTAATAACA
*
1816755 AGCTAATAACA
1 AACTAATAACA
*
1816766 AAC-CATAACA
1 AACTAATAACA
1816776 AACT
1 AACT
1816780 CTAACACCGG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
10 23 0.57
11 17 0.43
ACGTcount: A:0.59, C:0.21, G:0.02, T:0.18
Consensus pattern (11 bp):
AACTAATAACA
Found at i:1816754 original size:21 final size:20
Alignment explanation
Indices: 1816721--1816779 Score: 82
Period size: 21 Copynumber: 2.9 Consensus size: 20
1816711 CCAAGAAACC
1816721 AACAACTATAACAAACTAAT
1 AACAACTATAACAAACTAAT
*
1816741 AACAACTAATAACAAGCTAAT
1 AACAACT-ATAACAAACTAAT
*
1816762 AACAAACCATAACAAACT
1 AAC-AACTATAACAAACT
1816780 CTAACACCGG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 24 0.71
22 3 0.09
ACGTcount: A:0.59, C:0.22, G:0.02, T:0.17
Consensus pattern (20 bp):
AACAACTATAACAAACTAAT
Found at i:1819087 original size:14 final size:15
Alignment explanation
Indices: 1819070--1819099 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
1819060 TCTCTTTTTC
1819070 TCTTTTTAAA-TTAT
1 TCTTTTTAAAGTTAT
1819084 TCTTTTTAAAGTTAT
1 TCTTTTTAAAGTTAT
1819099 T
1 T
1819100 TGAGTGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (15 bp):
TCTTTTTAAAGTTAT
Found at i:1820496 original size:2 final size:2
Alignment explanation
Indices: 1820489--1820535 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
1820479 ATTTTATTTC
1820489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1820531 AT AT A
1 AT AT A
1820536 AAGGTTTATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1821672 original size:20 final size:19
Alignment explanation
Indices: 1821633--1821684 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
1821623 TTTCTTTGAT
1821633 ATTAAAAAATAAATAAATA
1 ATTAAAAAATAAATAAATA
* *
1821652 ATTAAAATAATTAATATATA
1 ATTAAAA-AATAAATAAATA
*
1821672 ATTTATAAAATAA
1 A-TTAAAAAATAA
1821685 GATATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 7 0.26
20 15 0.56
21 5 0.19
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTAAAAAATAAATAAATA
Found at i:1824496 original size:21 final size:21
Alignment explanation
Indices: 1824472--1824511 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1824462 CTTTTCATAC
1824472 ATGCATTTACATTTTGTATCT
1 ATGCATTTACATTTTGTATCT
*
1824493 ATGCATTTTCATTTTGTAT
1 ATGCATTTACATTTTGTAT
1824512 TCTTACTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (21 bp):
ATGCATTTACATTTTGTATCT
Found at i:1829468 original size:114 final size:114
Alignment explanation
Indices: 1829268--1829485 Score: 355
Period size: 114 Copynumber: 1.9 Consensus size: 114
1829258 CATTCTCGTT
* *
1829268 GTAGAAATAAGGAGGCCCAATAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTCGG
1 GTAGAAATAAAGAGGCCCAACAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTCGG
* *
1829333 TATGAACCCCAAAACCAATCATTAGATTTGAAAGATGAATTTGCTCATA
66 TAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTGCTCATA
* *
1829382 GTAGAAATAAAGAGGCCCAACAGCATCTTCTGGAATTGTTCTTTGAGTTATCTGATCTGGTTCGG
1 GTAGAAATAAAGAGGCCCAACAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTCGG
* * *
1829447 TAGGAACCCCAGAGCCAATCATTGGAATTGAAAGATGAA
66 TAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAA
1829486 CTGCATGATC
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 95 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (114 bp):
GTAGAAATAAAGAGGCCCAACAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTCGG
TAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTGCTCATA
Found at i:1831058 original size:30 final size:30
Alignment explanation
Indices: 1831022--1831084 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
1831012 GAAGGACCTG
* *
1831022 TCCAGAGGTTACAAAGAACCCCGGTAACTA
1 TCCAGAGGTCACAAAGAACCCCGGCAACTA
* * *
1831052 TCCAGAGGTCATAAAGATCCTCGGCAACTA
1 TCCAGAGGTCACAAAGAACCCCGGCAACTA
1831082 TCC
1 TCC
1831085 GTATGTTCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (30 bp):
TCCAGAGGTCACAAAGAACCCCGGCAACTA
Found at i:1831897 original size:64 final size:64
Alignment explanation
Indices: 1831765--1831925 Score: 182
Period size: 64 Copynumber: 2.5 Consensus size: 64
1831755 CAATGAATGT
* * * ** *
1831765 ATGCATCGATGCACTACTTGTGCATCGGTCCATAAAATGCATTCGATGTTTTTATTTAATGGGG
1 ATGCATCGATGCACTACTTGTGCATCGATGCATAAAATCCATTCGATGTTTTTATTTAATAAGC
* * *
1831829 ATGCATCGATGCACTCCTTATGCATCGATGCAT-AAATCCTATTCGATGTTTTCTATTTAA-AAT
1 ATGCATCGATGCACTACTTGTGCATCGATGCATAAAATCC-ATTCGATGTTTT-TATTTAATAAG
1831892 C
64 C
* * *
1831893 ATGCATCGATGCACTGCATGTGAATCGATGCAT
1 ATGCATCGATGCACTACTTGTGCATCGATGCAT
1831926 CTTAAACAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
63 5 0.06
64 70 0.85
65 7 0.09
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.35
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTGTGCATCGATGCATAAAATCCATTCGATGTTTTTATTTAATAAGC
Found at i:1835126 original size:25 final size:25
Alignment explanation
Indices: 1835092--1835141 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
1835082 ACACATGCAA
1835092 CTTACCTTCTTTTATCACTTTCACT
1 CTTACCTTCTTTTATCACTTTCACT
1835117 CTTACCTTCTTTTATCACTTTCACT
1 CTTACCTTCTTTTATCACTTTCACT
1835142 TTCATTTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (25 bp):
CTTACCTTCTTTTATCACTTTCACT
Found at i:1835332 original size:30 final size:30
Alignment explanation
Indices: 1835296--1835358 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
1835286 GAAGGACCTG
* *
1835296 TCCAGAGGTTACAAAGAACCCCGGTAACTA
1 TCCAGAGGTCACAAAGAACCCCGGCAACTA
* * *
1835326 TCCAGAGGTCATAAAGATCCTCGGCAACTA
1 TCCAGAGGTCACAAAGAACCCCGGCAACTA
1835356 TCC
1 TCC
1835359 GTATGTTCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (30 bp):
TCCAGAGGTCACAAAGAACCCCGGCAACTA
Found at i:1836112 original size:64 final size:64
Alignment explanation
Indices: 1836038--1836198 Score: 200
Period size: 64 Copynumber: 2.5 Consensus size: 64
1836028 CAATGAATGT
* * *
1836038 ATGCATCGATGCACTACTTGTGCATCGGTGCATAAAATGC-ATTCGATGTTTT-TATTTAATGAG
1 ATGCATCGATGCACTACTTGTGCATCGATGCAT-AAATCCTATTCGATGTTTTCTATTTAA-AAG
*
1836101 G
64 C
* * *
1836102 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAAATC
1 ATGCATCGATGCACTACTTGTGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAAAGC
* * *
1836166 ATGCATCGATGCACTGCATGTGAATCGATGCAT
1 ATGCATCGATGCACTACTTGTGCATCGATGCAT
1836199 CTTAAACAAT
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
63 5 0.06
64 72 0.86
65 7 0.08
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTGTGCATCGATGCATAAATCCTATTCGATGTTTTCTATTTAAAAGC
Found at i:1838352 original size:54 final size:54
Alignment explanation
Indices: 1838269--1838430 Score: 261
Period size: 54 Copynumber: 3.0 Consensus size: 54
1838259 TGACTGAGAA
* *
1838269 ATCTGAGCAGAAGCCATAAGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
1 ATCTGAGCAGAAGCCACAAGAAAGGATGAATGTGTTGTCAAATGTTTTACGAAC
* *
1838323 GTCTGAGCAGAAACCACAAGAAAGGATGAATGTGTTGTCAAATGTTTTACGAAC
1 ATCTGAGCAGAAGCCACAAGAAAGGATGAATGTGTTGTCAAATGTTTTACGAAC
* * *
1838377 ATCTGAGCAGAAGCCACAGGAAAGGATGAATGAGCTGTCAAATGTTTTACGAAC
1 ATCTGAGCAGAAGCCACAAGAAAGGATGAATGTGTTGTCAAATGTTTTACGAAC
1838431 CTGCTATTCT
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 99 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (54 bp):
ATCTGAGCAGAAGCCACAAGAAAGGATGAATGTGTTGTCAAATGTTTTACGAAC
Found at i:1838823 original size:22 final size:22
Alignment explanation
Indices: 1838798--1838874 Score: 118
Period size: 22 Copynumber: 3.5 Consensus size: 22
1838788 ATCTACATTC
1838798 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
1838820 TTCAAATATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
* * *
1838842 TTTAAATATGATAGATTCTTTT
1 TTCAAAGATGATAGATTCTCTT
1838864 TTCAAAGATGA
1 TTCAAAGATGA
1838875 AAGCTTTATT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:1839637 original size:76 final size:76
Alignment explanation
Indices: 1839553--1840261 Score: 1337
Period size: 76 Copynumber: 9.3 Consensus size: 76
1839543 CTATTTCCCA
*
1839553 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAACCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1839618 AGCCTTAGGGT
66 AGCCTTAGGGT
1839629 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1839694 AGCCTTAGGGT
66 AGCCTTAGGGT
1839705 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* *
1839770 AACCTTAAGGT
66 AGCCTTAGGGT
*
1839781 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1839846 AGCCTTAGGGT
66 AGCCTTAGGGT
1839857 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1839922 AGCCTTAGGGT
66 AGCCTTAGGGT
1839933 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1839998 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1840009 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGCGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1840074 AACCTTAGGGT
66 AGCCTTAGGGT
*
1840085 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1840150 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1840161 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAG-CTTTTTGATGTTTTCA
1840226 AAGCCTTAGGGT
65 AAGCCTTAGGGT
1840238 CATCTGTAAGTCCTACAGTGCATG
1 CATCTGTAAGTCCTACAGTGCATG
1840262 TTTTCAAACA
Statistics
Matches: 618, Mismatches: 14, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
76 567 0.92
77 51 0.08
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:1840412 original size:3 final size:3
Alignment explanation
Indices: 1840404--1840451 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
1840394 AATTTAAATA
* *
1840404 TAT TAT TAT TAT TAT TAT TAT TAA TA- TAT ATAT TATT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA-T TAT TAT TAT
1840450 TA
1 TA
1840452 CAAAACCCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
2 2 0.05
3 31 0.79
4 6 0.15
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:1841923 original size:20 final size:19
Alignment explanation
Indices: 1841898--1841939 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
1841888 TTATTTTATA
1841898 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
1841918 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
1841937 AAT
1 AAT
1841940 ATCAAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:1841941 original size:119 final size:119
Alignment explanation
Indices: 1841796--1842012 Score: 269
Period size: 120 Copynumber: 1.8 Consensus size: 119
1841786 TTTAATCCTA
* ** * * *
1841796 TTTTAATATTTATTTATTTTCCAATAT-TAAG-AAAGGGCAGTCTTAAAATAAC-TGGATGTCCA
1 TTTTAATATTTATTTATTTTCCAATATCAAAGAAAAAAGCAGTCTT-AAAGAACTTAGAAGT-CA
*
1841858 TTTTCTGATATTTTTAAATAAATAAATATCTTATTTTATAAATTATATATTAATTG
64 TTTTCTGATATTTCTAAATAAATAAATATCTTATTTTATAAATTATATATTAATTG
** * * *
1841914 TTTTAATTATTTATTTATTTTTTAATATCAAAGAAAAAAGCTGTCTTAAGGCACTTAGAAGTCAT
1 TTTTAA-TATTTATTTATTTTCCAATATCAAAGAAAAAAGCAGTCTTAAAGAACTTAGAAGTCAT
*
1841979 TTTCTGATATTTCTAAATAAATAAATATTTTATT
65 TTTCTGATATTTCTAAATAAATAAATATCTTATT
1842013 AATATATATT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
118 6 0.07
119 19 0.23
120 42 0.51
121 15 0.18
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (119 bp):
TTTTAATATTTATTTATTTTCCAATATCAAAGAAAAAAGCAGTCTTAAAGAACTTAGAAGTCATT
TTCTGATATTTCTAAATAAATAAATATCTTATTTTATAAATTATATATTAATTG
Found at i:1844450 original size:27 final size:26
Alignment explanation
Indices: 1844413--1844470 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
1844403 ATATTTTTAA
* *
1844413 ATTTTCAAAAAATTAAAAATAAAAATT
1 ATTTTC-AAAAATCAAAAATAAAAAAT
*
1844440 ATTTTCTAAAATCAAAAATAAAAAAT
1 ATTTTCAAAAATCAAAAATAAAAAAT
1844466 ATTTT
1 ATTTT
1844471 TTTAGAACTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (26 bp):
ATTTTCAAAAATCAAAAATAAAAAAT
Found at i:1844457 original size:26 final size:26
Alignment explanation
Indices: 1844421--1844470 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1844411 AAATTTTCAA
* *
1844421 AAAATTAAAAATAAAAATTATTTTCT
1 AAAATCAAAAATAAAAAATATTTTCT
1844447 AAAATCAAAAATAAAAAATATTTT
1 AAAATCAAAAATAAAAAATATTTT
1844471 TTTAGAACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (26 bp):
AAAATCAAAAATAAAAAATATTTTCT
Found at i:1847788 original size:6 final size:6
Alignment explanation
Indices: 1847777--1847802 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
1847767 CTAGGGAATG
1847777 AGGCAC AGGCAC AGGCAC AGGCAC AG
1 AGGCAC AGGCAC AGGCAC AGGCAC AG
1847803 CAGTGTCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.31, G:0.35, T:0.00
Consensus pattern (6 bp):
AGGCAC
Found at i:1860567 original size:37 final size:37
Alignment explanation
Indices: 1860514--1860618 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
1860504 CATTTTCGTC
1860514 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
1860551 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
1860588 CTACTAAGATTTAAATTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
1860619 CCACAAGAAC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:1860818 original size:2 final size:2
Alignment explanation
Indices: 1860811--1860883 Score: 130
Period size: 2 Copynumber: 37.0 Consensus size: 2
1860801 TAATACTTTG
1860811 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
1860853 AT AT AT AT AT AT AT AT AT AT AT -T AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1860884 TTTTTCCTTT
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.01
2 67 0.99
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:1863107 original size:34 final size:32
Alignment explanation
Indices: 1863039--1863108 Score: 77
Period size: 34 Copynumber: 2.1 Consensus size: 32
1863029 ACCTTACAAC
* * *
1863039 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTTACGGGATAAACTAGAACATT
* *
1863071 TCCCTAGCTTTTATACGGGATAAGCTAGAATATT
1 TCCCTAG-TTTT-TACGGGATAAACTAGAACATT
1863105 TCCC
1 TCCC
1863109 CTTTACAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 7 0.23
33 4 0.13
34 20 0.65
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (32 bp):
TCCCTAGTTTTTACGGGATAAACTAGAACATT
Found at i:1863516 original size:21 final size:21
Alignment explanation
Indices: 1863480--1863546 Score: 93
Period size: 20 Copynumber: 3.3 Consensus size: 21
1863470 TTGATTCATG
*
1863480 GATGCATCGC-AGGATGCATC
1 GATGCATAGCAAGGATGCATC
*
1863500 GATGCATGGCAAGGATGCATC
1 GATGCATAGCAAGGATGCATC
*
1863521 GATGCATAGCAA-GATGCATG
1 GATGCATAGCAAGGATGCATC
1863541 GATGCA
1 GATGCA
1863547 CTAATTGCAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 22 0.51
21 21 0.49
ACGTcount: A:0.30, C:0.19, G:0.31, T:0.19
Consensus pattern (21 bp):
GATGCATAGCAAGGATGCATC
Found at i:1863572 original size:8 final size:8
Alignment explanation
Indices: 1863559--1863664 Score: 58
Period size: 8 Copynumber: 14.8 Consensus size: 8
1863549 AATTGCATTC
1863559 GATGCATG
1 GATGCATG
1863567 GATGCAT-
1 GATGCATG
1863574 --TGCAT-
1 GATGCATG
* *
1863579 GAGGCATC
1 GATGCATG
1863587 GATGCAT-
1 GATGCATG
*
1863594 TAGTGCA-G
1 GA-TGCATG
1863602 -ATGCATG
1 GATGCATG
1863609 GATGCAT-
1 GATGCATG
*
1863616 --TGCAGG
1 GATGCATG
1863622 GATGCATG
1 GATGCATG
1863630 GATGCA--
1 GATGCATG
* *
1863636 -CTGCAGG
1 GATGCATG
1863643 GATGCATG
1 GATGCATG
1863651 GATGCATG
1 GATGCATG
1863659 GATGCA
1 GATGCA
1863665 CTTTGACACC
Statistics
Matches: 77, Mismatches: 8, Indels: 26
0.69 0.07 0.23
Matches are distributed among these distances:
5 13 0.17
6 4 0.05
7 7 0.09
8 53 0.69
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (8 bp):
GATGCATG
Found at i:1863626 original size:21 final size:20
Alignment explanation
Indices: 1863476--1863657 Score: 150
Period size: 21 Copynumber: 8.6 Consensus size: 20
1863466 AGCCTTGATT
*
1863476 CATGGATGCATCGCAGGATG
1 CATGGATGCATTGCAGGATG
* *
1863496 CATCGATGCATGGCAAGGATG
1 CATGGATGCATTGC-AGGATG
* * *
1863517 CATCGATGCATAGCAAGATG
1 CATGGATGCATTGCAGGATG
*
1863537 CATGGATGCACTAATTGCATTCGATG
1 CATGGATG--C--ATTGCA--GGATG
* *
1863563 CATGGATGCATTGCATGAGG
1 CATGGATGCATTGCAGGATG
*
1863583 CATCGATGCATTAGTGCA-GATG
1 CATGGATGCA-T--TGCAGGATG
1863605 CATGGATGCATTGCAGGGATG
1 CATGGATGCATTGCA-GGATG
*
1863626 CATGGATGCACTGCAGGGATG
1 CATGGATGCATTGCA-GGATG
1863647 CATGGATGCAT
1 CATGGATGCAT
1863658 GGATGCACTT
Statistics
Matches: 136, Mismatches: 14, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
19 4 0.03
20 36 0.26
21 55 0.40
22 19 0.14
23 4 0.03
24 6 0.04
26 12 0.09
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (20 bp):
CATGGATGCATTGCAGGATG
Found at i:1863805 original size:30 final size:30
Alignment explanation
Indices: 1863748--1863807 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
1863738 AACTTTGAAT
1863748 AAATTCAATTCAAATCCAAAAACATTTTGC
1 AAATTCAATTCAAATCCAAAAACATTTTGC
*
1863778 AAATTCAATTCAAGTCCAAAAACATTTTGC
1 AAATTCAATTCAAATCCAAAAACATTTTGC
1863808 CTTAAATTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (30 bp):
AAATTCAATTCAAATCCAAAAACATTTTGC
Found at i:1865081 original size:8 final size:8
Alignment explanation
Indices: 1865070--1865198 Score: 56
Period size: 8 Copynumber: 18.0 Consensus size: 8
1865060 ATTCGATGTT
1865070 TGGATGCA
1 TGGATGCA
1865078 TGGATGCA
1 TGGATGCA
1865086 T---TGCA
1 TGGATGCA
*
1865091 T-GAGGCA
1 TGGATGCA
*
1865098 TCGATGCA
1 TGGATGCA
*
1865106 T-TAGTGCA
1 TGGA-TGCA
1865114 --GATGCA
1 TGGATGCA
1865120 TGGATGCA
1 TGGATGCA
1865128 T---TGCA
1 TGGATGCA
* *
1865133 GGGATGTA
1 TGGATGCA
1865141 TGGATGCA
1 TGGATGCA
*
1865149 ---CTGCA
1 TGGATGCA
*
1865154 GGGATGCA
1 TGGATGCA
1865162 TGGATGCA
1 TGGATGCA
*
1865170 ---CTGCA
1 TGGATGCA
*
1865175 GGGATGCA
1 TGGATGCA
1865183 TGGATGCA
1 TGGATGCA
1865191 TGGATGCA
1 TGGATGCA
1865199 CTTTGACACC
Statistics
Matches: 92, Mismatches: 14, Indels: 30
0.68 0.10 0.22
Matches are distributed among these distances:
5 17 0.18
6 4 0.04
7 6 0.07
8 65 0.71
ACGTcount: A:0.25, C:0.16, G:0.36, T:0.24
Consensus pattern (8 bp):
TGGATGCA
Found at i:1865143 original size:21 final size:21
Alignment explanation
Indices: 1865114--1865190 Score: 136
Period size: 21 Copynumber: 3.7 Consensus size: 21
1865104 CATTAGTGCA
*
1865114 GATGCATGGATGCATTGCAGG
1 GATGCATGGATGCACTGCAGG
*
1865135 GATGTATGGATGCACTGCAGG
1 GATGCATGGATGCACTGCAGG
1865156 GATGCATGGATGCACTGCAGG
1 GATGCATGGATGCACTGCAGG
1865177 GATGCATGGATGCA
1 GATGCATGGATGCA
1865191 TGGATGCACT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.25, C:0.16, G:0.38, T:0.22
Consensus pattern (21 bp):
GATGCATGGATGCACTGCAGG
Found at i:1865339 original size:30 final size:30
Alignment explanation
Indices: 1865282--1865341 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
1865272 AACTTTGAAT
1865282 AAATTCAATTCAAATCCAAAAACATTTTGC
1 AAATTCAATTCAAATCCAAAAACATTTTGC
*
1865312 AAATTCAATTCAAGTCCAAAAACATTTTGC
1 AAATTCAATTCAAATCCAAAAACATTTTGC
1865342 CTTAAATTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (30 bp):
AAATTCAATTCAAATCCAAAAACATTTTGC
Found at i:1868430 original size:183 final size:183
Alignment explanation
Indices: 1868113--1868649 Score: 878
Period size: 183 Copynumber: 2.9 Consensus size: 183
1868103 ATTAAATCCG
* *
1868113 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTTGAAAGACCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
*
1868178 ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTACACTGCTT
66 ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
1868243 TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
131 TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
*
1868296 TAAAGCTGAGCTATTCCACTAAGACAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
* * * ***
1868361 ATATATTATGTTCAAACTGTGACACTACTCGGACACTTGGCAATTCGGTGTTTGCTCCACAAATT
66 ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
* *
1868426 TTGTCAGGCCAAAGACTTTGTGATGAGACGAACCCTTCAGTGATTTGTCCCTT
131 TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
*
1868479 TAAGGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
** * * *
1868544 ATAGATTACATTCAAA-TCATGACATTGCTCAGACACTTGGCAATTCGGTGTTTGCTCCATTGCT
66 ATAGATTATGTTCAAACT-ATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCT
* *
1868608 TTTGTCAGGTCAAAGACTTTGTGATGAGATGAACCATTCAGT
130 TTTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGT
1868650 TAAACATGAT
Statistics
Matches: 325, Mismatches: 28, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
182 1 0.00
183 324 1.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (183 bp):
TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
Found at i:1869845 original size:36 final size:34
Alignment explanation
Indices: 1869805--1869918 Score: 86
Period size: 36 Copynumber: 3.2 Consensus size: 34
1869795 CACTCAAATT
1869805 TGTTTTTCTTAAAACATACTTTGTCTCACTTGAGAC
1 TGTTTTTCTTAAAACA-A-TTTGTCTCACTTGAGAC
* * * ** *
1869841 TGTTTTTCTCGAAAGA-AGATTTATTTCACTCAAGAT
1 TGTTTTTCT-TAAA-ACA-ATTTGTCTCACTTGAGAC
*
1869877 TGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGAC
1 TGTTTTTCTTAAAAC-A-ATTTGTCTCACTTGAGAC
*
1869913 CGTTTT
1 TGTTTT
1869919 CACTCGAAAG
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
34 1 0.02
35 3 0.05
36 49 0.83
37 5 0.08
38 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (34 bp):
TGTTTTTCTTAAAACAATTTGTCTCACTTGAGAC
Found at i:1869873 original size:72 final size:75
Alignment explanation
Indices: 1869789--1869964 Score: 218
Period size: 72 Copynumber: 2.4 Consensus size: 75
1869779 ATGCAGATGA
* * * *
1869789 TTATCTCACTCAA-ATTTGTTTTTCTTAAAACATA-CTTTGTCTCACTTGAGACTGTTTT-TCTC
1 TTATTTCACTCAAGA-TTGTTTTTCTTAAAACA-AGATTTGTCTCACTTGAGACCGTTTTCACTC
1869851 GAAAGAA-G-AT
64 GAAAGAAGGCAT
*
1869861 TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACCGTTTTCACTCGA
1 TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACCGTTTTCACTCGA
1869926 AAGAAGGCAT
66 AAGAAGGCAT
** *
1869936 TTCATTTCACTCAAGGCTGTTTTTTTTAA
1 TT-ATTTCACTCAAGATTGTTTTTCTTAA
1869965 GAAGATTTTA
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
71 1 0.01
72 50 0.56
73 11 0.12
74 1 0.01
75 4 0.04
76 23 0.26
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (75 bp):
TTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACCGTTTTCACTCGA
AAGAAGGCAT
Found at i:1870115 original size:39 final size:39
Alignment explanation
Indices: 1870058--1870132 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
1870048 CCTTGAAATT
* *
1870058 AATTTTTTCTCTCCTGAGATAGTTTCCCTCGAAACAGAA
1 AATTTTGTCTCTCCTGAGACAGTTTCCCTCGAAACAGAA
* *
1870097 AATTTTGTCTC-CCTTGAGACAGTTTCTCTTGAAACA
1 AATTTTGTCTCTCC-TGAGACAGTTTCCCTCGAAACA
1870133 TAAACATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.06
39 29 0.94
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (39 bp):
AATTTTGTCTCTCCTGAGACAGTTTCCCTCGAAACAGAA
Found at i:1870201 original size:105 final size:104
Alignment explanation
Indices: 1870035--1870353 Score: 495
Period size: 105 Copynumber: 3.1 Consensus size: 104
1870025 ACAGTTTCTC
*
1870035 TTGAAAACATTTCCCTTGAAATTAATTTTTTCTCTCC-TGAGATAGTTTCCCTCGAAACAGAAAA
1 TTGAAAACATTTCCCTTGAAA-TGATTTTTTCTCTCCTTGAGATAGTTTCCCTCGAAACAGAAAA
1870099 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
65 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
1870139 TTGAAAACATTTCCCTTGAAATGATTTTTTCTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAA
1 TTGAAAACATTTCCCTTGAAATGATTTTTTCTCTC-CTTGAGATAGTTTCCCTCGAAACAGAAAA
1870204 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
65 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
* * * *
1870244 TTGAAAACATTTTCCTTGAAATGAATTTTATCTC-GCTTGAGATAGTTTCCCTTGAAAC-G--AA
1 TTGAAAACATTTCCCTTGAAATG-ATTTTTTCTCTCCTTGAGATAGTTTCCCTCGAAACAGAAAA
** * *
1870305 TTTTGTCTCCCTTGAGACAGTTTCTCTCCAAACATAATCT
65 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
1870345 TTGAAAACA
1 TTGAAAACA
1870354 ATTTAACGAA
Statistics
Matches: 203, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
101 47 0.23
103 14 0.07
104 44 0.22
105 89 0.44
106 9 0.04
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (104 bp):
TTGAAAACATTTCCCTTGAAATGATTTTTTCTCTCCTTGAGATAGTTTCCCTCGAAACAGAAAAT
TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
Found at i:1870300 original size:36 final size:36
Alignment explanation
Indices: 1870257--1870328 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
1870247 AAAACATTTT
* * *
1870257 CCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTC
1 CCTTGAAACGAATTTTATCTCCCTTGAGACAGTTTC
*
1870293 CCTTGAAACGAATTTTGTCTCCCTTGAGACAGTTTC
1 CCTTGAAACGAATTTTATCTCCCTTGAGACAGTTTC
1870329 TCTCCAAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (36 bp):
CCTTGAAACGAATTTTATCTCCCTTGAGACAGTTTC
Found at i:1870730 original size:105 final size:105
Alignment explanation
Indices: 1870527--1871157 Score: 894
Period size: 105 Copynumber: 6.0 Consensus size: 105
1870517 ATATCGTGAC
* * * * * *
1870527 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCC
1870592 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
65 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
1870633 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAATAACTTCTCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
1870698 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
1870738 ACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAATAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
*
1870803 ATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
1870843 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGTTGCTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
*
1870908 ATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
1870948 ACTCCAGACAACGCAAGTTCAACTCCACGACGAAGGGACCGCTGCTTGTCAATAA-AA-TT-TC-
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
* * * *
1871009 A-TTAAGAGTCAATTTTAACTTCACAGCGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * * * * *
1871048 ACTCGAGATAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCC
** * * * * *
1871113 GGTTCCAAAGCCAATTTCAACTTCACGACGGAGGATATTAG
65 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
1871154 ACTC
1 ACTC
1871158 GGAACAATGC
Statistics
Matches: 478, Mismatches: 41, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
100 77 0.16
101 3 0.01
102 3 0.01
103 4 0.01
104 3 0.01
105 307 0.64
106 81 0.17
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:1871753 original size:37 final size:37
Alignment explanation
Indices: 1871700--1871804 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
1871690 CATTTTCGTC
1871700 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
1871737 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
1871774 CTACTAAGATTTAAATTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
1871805 CCACAAGCAC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:1872076 original size:16 final size:18
Alignment explanation
Indices: 1872057--1872096 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
1872047 TATATAATTA
1872057 TTATTTTAC-TATTT-TT
1 TTATTTTACTTATTTATT
*
1872073 TTATCTTACTTATTTATT
1 TTATTTTACTTATTTATT
1872091 TTATTT
1 TTATTT
1872097 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 8 0.40
17 5 0.25
18 7 0.35
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (18 bp):
TTATTTTACTTATTTATT
Found at i:1873028 original size:26 final size:28
Alignment explanation
Indices: 1872998--1873059 Score: 74
Period size: 31 Copynumber: 2.2 Consensus size: 28
1872988 GAAAATTTTA
1872998 AGCTC-GC-GAGTTTTCGAGTCGAGTCG
1 AGCTCTGCAGAGTTTTCGAGTCGAGTCG
*
1873024 AGCTCTATTTCAGAGTTTTCGAGTCGAGTCG
1 AGCTC---TGCAGAGTTTTCGAGTCGAGTCG
1873055 AGCTC
1 AGCTC
1873060 AGTAATACTC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.17
30 1 0.03
31 24 0.80
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCTCTGCAGAGTTTTCGAGTCGAGTCG
Found at i:1877675 original size:21 final size:21
Alignment explanation
Indices: 1877646--1877748 Score: 97
Period size: 21 Copynumber: 4.9 Consensus size: 21
1877636 GATTTACATA
*
1877646 TCGCATTGCGATAGTCCAAGT
1 TCGCGTTGCGATAGTCCAAGT
* *
1877667 TCGCGTTGCAATTTATTCCAAGT
1 TCGCGTTGCGA--TAGTCCAAGT
*
1877690 T--CGTTGCGATAGTCGAAGT
1 TCGCGTTGCGATAGTCCAAGT
*
1877709 TCGCGTTGCGATTTATTCCAAGT
1 TCGCGTTGCGA--TAGTCCAAGT
1877732 T--CGTTGCGATAGTCCAA
1 TCGCGTTGCGATAGTCCAA
1877749 AATCGCAACA
Statistics
Matches: 67, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
19 16 0.24
21 32 0.48
23 19 0.28
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.34
Consensus pattern (21 bp):
TCGCGTTGCGATAGTCCAAGT
Found at i:1877698 original size:42 final size:42
Alignment explanation
Indices: 1877651--1877748 Score: 178
Period size: 42 Copynumber: 2.3 Consensus size: 42
1877641 ACATATCGCA
1877651 TTGCGATAGTCCAAGTTCGCGTTGCAATTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCAATTTATTCCAAGTTCG
* *
1877693 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCAATTTATTCCAAGTTCG
1877735 TTGCGATAGTCCAA
1 TTGCGATAGTCCAA
1877749 AATCGCAACA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.35
Consensus pattern (42 bp):
TTGCGATAGTCCAAGTTCGCGTTGCAATTTATTCCAAGTTCG
Found at i:1877845 original size:6 final size:6
Alignment explanation
Indices: 1877834--1877876 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
1877824 GACACGTATT
*
1877834 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACGACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
1877877 GACGAGACGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.35, C:0.47, G:0.19, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:1877882 original size:5 final size:5
Alignment explanation
Indices: 1877867--1877914 Score: 62
Period size: 5 Copynumber: 9.6 Consensus size: 5
1877857 GACCACGACC
* *
1877867 ACGACG ACGAG ACGAG ACGAG ACGAG ACGAT ACGAT ACGAG AC-AG ACG
1 ACGA-G ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACG
1877915 GCGGCGGCGG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
4 4 0.10
5 31 0.79
6 4 0.10
ACGTcount: A:0.40, C:0.23, G:0.33, T:0.04
Consensus pattern (5 bp):
ACGAG
Found at i:1878533 original size:21 final size:21
Alignment explanation
Indices: 1878509--1878591 Score: 139
Period size: 21 Copynumber: 4.0 Consensus size: 21
1878499 TGTTGCGATT
1878509 TTGGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
1878530 TTGGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
* * *
1878551 TTCGACTATCACAATGCAAAC
1 TTGGACTATCGCAATGCGAAC
1878572 TTGGACTATCGCAATGCGAA
1 TTGGACTATCGCAATGCGAA
1878592 TATGTAAATC
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (21 bp):
TTGGACTATCGCAATGCGAAC
Found at i:1878630 original size:21 final size:21
Alignment explanation
Indices: 1878600--1878756 Score: 212
Period size: 21 Copynumber: 7.5 Consensus size: 21
1878590 AATATGTAAA
*
1878600 TCGCAATGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
1878621 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
* *
1878642 TCGCATTGCGATAGT-CGACT
1 TCGCATTGCGATAGTCCAAGT
* *
1878662 ATCGCATTGCGAT-TTACATA-T
1 -TCGCATTGCGATAGTCCA-AGT
1878683 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
1878704 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
*
1878725 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCCAAGT
*
1878746 TCGCGTTGCGA
1 TCGCATTGCGA
1878757 ATCTGGAAAC
Statistics
Matches: 122, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
20 17 0.14
21 104 0.85
22 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:1878652 original size:62 final size:61
Alignment explanation
Indices: 1878580--1878756 Score: 198
Period size: 62 Copynumber: 2.8 Consensus size: 61
1878570 ACTTGGACTA
* *
1878580 TCGCAATGCGAATATGT-AAATCGCAATGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGT
1 TCGCATTGCG-ATA-GTCAAATCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGT
* * *
1878642 TCGCATTGCGATAGTCGACTATCGCATTGCGAT-TTACATA-TTCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTC-A-AATCGCATTGCGATAGTCCA-AGTTCGCATTGCGATAGTCCAAGT
* * *
1878704 TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCGAAGTTCGCGTTGCGA
1 TCGCATTGCGATAGT-CAA-ATCGCATTGCGATAGTCCAAGTTCGCATTGCGA
1878757 ATCTGGAAAC
Statistics
Matches: 96, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
60 2 0.02
61 3 0.03
62 64 0.67
63 27 0.28
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (61 bp):
TCGCATTGCGATAGTCAAATCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAAGT
Found at i:1878662 original size:83 final size:83
Alignment explanation
Indices: 1878575--1878742 Score: 270
Period size: 83 Copynumber: 2.0 Consensus size: 83
1878565 TGCAAACTTG
1878575 GACTATCGCAATGCGAATATGTA-A-A-TCGCAATGCGATAGTCCAAGTTCGCATTGCGATAGTC
1 GACTATCGCAATGCG-AT-T-TACATATTCGCAATGCGATAGTCCAAGTTCGCATTGCGATAGTC
1878637 CAAGTTCGCATTGCGATAGTC
63 CAAGTTCGCATTGCGATAGTC
* *
1878658 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCCAA
1 GACTATCGCAATGCGATTTACATATTCGCAATGCGATAGTCCAAGTTCGCATTGCGATAGTCCAA
1878723 GTTCGCATTGCGATAGTC
66 GTTCGCATTGCGATAGTC
1878741 GA
1 GA
1878743 AGTTCGCGTT
Statistics
Matches: 80, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
80 2 0.03
81 2 0.03
82 3 0.04
83 73 0.91
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (83 bp):
GACTATCGCAATGCGATTTACATATTCGCAATGCGATAGTCCAAGTTCGCATTGCGATAGTCCAA
GTTCGCATTGCGATAGTC
Found at i:1889626 original size:34 final size:34
Alignment explanation
Indices: 1889541--1889629 Score: 169
Period size: 34 Copynumber: 2.6 Consensus size: 34
1889531 AATATTGATG
*
1889541 GATTATGATGTTACACGAGACCAGAAGATCGATA
1 GATTATGATGTTACACGGGACCAGAAGATCGATA
1889575 GATTATGATGTTACACGGGACCAGAAGATCGATA
1 GATTATGATGTTACACGGGACCAGAAGATCGATA
1889609 GATTATGATGTTACACGGGAC
1 GATTATGATGTTACACGGGAC
1889630 TACTGAAGTG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 54 1.00
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.25
Consensus pattern (34 bp):
GATTATGATGTTACACGGGACCAGAAGATCGATA
Found at i:1894967 original size:27 final size:27
Alignment explanation
Indices: 1894907--1894960 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
1894897 TACTGGAAGC
* *
1894907 AGAAAAATGATCTATTAAATATTTAAA
1 AGAAAAAGGATCTATTAAACATTTAAA
1894934 AGAAAAAGGATCTATTAAACATTTAAA
1 AGAAAAAGGATCTATTAAACATTTAAA
1894961 TTTAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.30
Consensus pattern (27 bp):
AGAAAAAGGATCTATTAAACATTTAAA
Found at i:1895797 original size:19 final size:19
Alignment explanation
Indices: 1895773--1895815 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
1895763 TATTGAATGA
*
1895773 AACTTTACGCATATTAATT
1 AACTTTACGCAGATTAATT
1895792 AACTTTACGCAGATTAATT
1 AACTTTACGCAGATTAATT
1895811 AACTT
1 AACTT
1895816 AGAACACATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (19 bp):
AACTTTACGCAGATTAATT
Found at i:1897798 original size:59 final size:58
Alignment explanation
Indices: 1897735--1897994 Score: 213
Period size: 58 Copynumber: 4.4 Consensus size: 58
1897725 ATACCATTAG
** **
1897735 TATGATTTTGTTACCATTTTAGCACATAATATGCCCTATCTGGAAATCCATATTTTCAA
1 TATGATTTCCTTACCA-TTTAGCACATAATATGCCCTATCTGGAAATCCATAAATTCAA
* * ** * * * *
1897794 TATGATTTCCTTATCATTTAGCACCCT--TAGTGCTTTATCTGGAAACCCATACACTCAG
1 TATGATTTCCTTACCATTTAGCA-CATAATA-TGCCCTATCTGGAAATCCATAAATTCAA
* * *
1897852 TATAATTCCCTTACCATTTTAGCACATAATATGCCCTATCTGGAAATCCATAACTTCAA
1 TATGATTTCCTTACCA-TTTAGCACATAATATGCCCTATCTGGAAATCCATAAATTCAA
* * * * * * * *
1897911 TATGATTTCCTTATCATTTAGCACACTCA-GTGCTCC-ATATGGAAATCTATACACTCAT
1 TATGATTTCCTTACCATTTAGCACA-TAATATGC-CCTATCTGGAAATCCATAAATTCAA
*
1897969 TATGATTTCCTTAACATTTTAGCACA
1 TATGATTTCCTTACCA-TTTAGCACA
1897995 CAAAGTGCCA
Statistics
Matches: 159, Mismatches: 34, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
57 2 0.01
58 86 0.54
59 69 0.43
60 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (58 bp):
TATGATTTCCTTACCATTTAGCACATAATATGCCCTATCTGGAAATCCATAAATTCAA
Found at i:1897866 original size:117 final size:117
Alignment explanation
Indices: 1897745--1897994 Score: 383
Period size: 117 Copynumber: 2.1 Consensus size: 117
1897735 TATGATTTTG
**
1897745 TTACCATTTTAGCACATAATATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCA
1 TTACCATTTTAGCACATAATATGCCCTATCTGGAAATCCATAACTTCAATATGATTTCCTTATCA
* * ** *
1897810 TTTAGCACCCTTAGTGCTTTATCTGGAAACCCATACACTCAGTATAATTCCC
66 TTTAGCACACTCAGTGCTCCATATGGAAACCCATACACTCAGTATAATTCCC
1897862 TTACCATTTTAGCACATAATATGCCCTATCTGGAAATCCATAACTTCAATATGATTTCCTTATCA
1 TTACCATTTTAGCACATAATATGCCCTATCTGGAAATCCATAACTTCAATATGATTTCCTTATCA
* * * * *
1897927 TTTAGCACACTCAGTGCTCCATATGGAAATCTATACACTCATTATGATTTCC
66 TTTAGCACACTCAGTGCTCCATATGGAAACCCATACACTCAGTATAATTCCC
*
1897979 TTAACATTTTAGCACA
1 TTACCATTTTAGCACA
1897995 CAAAGTGCCA
Statistics
Matches: 120, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
117 120 1.00
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.36
Consensus pattern (117 bp):
TTACCATTTTAGCACATAATATGCCCTATCTGGAAATCCATAACTTCAATATGATTTCCTTATCA
TTTAGCACACTCAGTGCTCCATATGGAAACCCATACACTCAGTATAATTCCC
Found at i:1898020 original size:59 final size:59
Alignment explanation
Indices: 1897692--1898022 Score: 195
Period size: 59 Copynumber: 5.6 Consensus size: 59
1897682 TCCCTTTTCG
* * * ** *
1897692 TTTTAGCACACAAAGTGTCC-TATTCGAAAATCC-ATAC-CATTAGTATGATTTTGTTACCA
1 TTTTAGCACACAAAGTG-CCATA-TCGGAAATCCTATACAC-TCAATATGATTTCCTTAACA
* * *** *
1897751 TTTTAGCACATAATA-TGCCCTATCTGGAAATCC-ATATTTTCAATATGATTTCCTTATCA
1 TTTTAGCACACAA-AGTGCCATATC-GGAAATCCTATACACTCAATATGATTTCCTTAACA
* ** ** * * * * *
1897810 -TTTAGCACCCTTAGTGCTTTATCTGGAAA-CCCATACACTCAGTATAATTCCCTTACCA
1 TTTTAGCACACAAAGTGCCATATC-GGAAATCCTATACACTCAATATGATTTCCTTAACA
* * *
1897868 TTTTAGCACATAATA-TGCCCTATCTGGAAATCC-ATA-ACTTCAATATGATTTCCTTATCA
1 TTTTAGCACACAA-AGTGCCATATC-GGAAATCCTATACAC-TCAATATGATTTCCTTAACA
** *
1897927 -TTTAGCACACTCAGTGCTCCATAT-GGAAAT-CTATACACTCATTATGATTTCCTTAACA
1 TTTTAGCACACAAAGTG--CCATATCGGAAATCCTATACACTCAATATGATTTCCTTAACA
*
1897985 TTTTAGCACACAAAGTGCCAT-TCGGTAATCACTATACA
1 TTTTAGCACACAAAGTGCCATATCGGAAATC-CTATACA
1898023 TACATCAATA
Statistics
Matches: 212, Mismatches: 41, Indels: 38
0.73 0.14 0.13
Matches are distributed among these distances:
56 1 0.00
57 14 0.07
58 84 0.40
59 104 0.49
60 9 0.04
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.35
Consensus pattern (59 bp):
TTTTAGCACACAAAGTGCCATATCGGAAATCCTATACACTCAATATGATTTCCTTAACA
Found at i:1904053 original size:28 final size:27
Alignment explanation
Indices: 1904022--1904094 Score: 62
Period size: 28 Copynumber: 2.6 Consensus size: 27
1904012 TATATAATAT
1904022 TATTCTTAATAATATTATATATCTTATA
1 TATT-TTAATAATATTATATATCTTATA
*
1904050 TA--TTAGATATATATTATTATATCTTATT
1 TATTTTA-ATA-ATATTA-TATATCTTATA
*
1904078 TATTATTTAT-ATATTAT
1 TATT-TTAATAATATTAT
1904095 TATTTAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
25 3 0.08
26 3 0.08
27 7 0.19
28 20 0.54
30 2 0.05
31 2 0.05
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (27 bp):
TATTTTAATAATATTATATATCTTATA
Found at i:1904095 original size:28 final size:28
Alignment explanation
Indices: 1904033--1904097 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
1904023 ATTCTTAATA
1904033 ATATTA-TATATCTTATATATTAGATAT
1 ATATTATTATATCTTATATATTAGATAT
* **
1904060 ATATTATTATATCTTATTTATTATTTAT
1 ATATTATTATATCTTATATATTAGATAT
1904088 ATATTATTAT
1 ATATTATTAT
1904098 TTAAATAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 6 0.18
28 28 0.82
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (28 bp):
ATATTATTATATCTTATATATTAGATAT
Found at i:1904109 original size:14 final size:14
Alignment explanation
Indices: 1904078--1904125 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
1904068 ATATCTTATT
* *
1904078 TATTATTTATATAT
1 TATTATTTAAATAA
1904092 TATTATTTAAATAA
1 TATTATTTAAATAA
*
1904106 TATTTAAATTAAATAA
1 TA-TT-ATTTAAATAA
1904122 TATT
1 TATT
1904126 GAAATATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
14 14 0.48
15 4 0.14
16 11 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TATTATTTAAATAA
Found at i:1904119 original size:16 final size:16
Alignment explanation
Indices: 1904098--1904130 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
1904088 ATATTATTAT
*
1904098 TTAAATAATATTTAAA
1 TTAAATAATATTGAAA
1904114 TTAAATAATATTGAAA
1 TTAAATAATATTGAAA
1904130 T
1 T
1904131 ATTTAATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
TTAAATAATATTGAAA
Found at i:1904189 original size:8 final size:8
Alignment explanation
Indices: 1904176--1904215 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
1904166 AATATTTTCT
1904176 TAATTTAA
1 TAATTTAA
1904184 TAATTTAA
1 TAATTTAA
*
1904192 -AATATTAT
1 TAAT-TTAA
1904200 TAATTTAA
1 TAATTTAA
1904208 TAATTTAA
1 TAATTTAA
1904216 AATCTCATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 3 0.11
8 22 0.79
9 3 0.11
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TAATTTAA
Found at i:1906513 original size:21 final size:21
Alignment explanation
Indices: 1906471--1906513 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
1906461 TTTCTAGGCT
* * *
1906471 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
1906492 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
1906513 A
1 A
1906514 ACGAACTAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:1908149 original size:23 final size:23
Alignment explanation
Indices: 1908119--1908179 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
1908109 TATGGAACTA
1908119 CGGTGCAATTCTACGCGGCACTC
1 CGGTGCAATTCTACGCGGCACTC
* *
1908142 CGGTGCAATTCTACGTGGCACTT
1 CGGTGCAATTCTACGCGGCACTC
*
1908165 CGGTGCAATTATACG
1 CGGTGCAATTCTACG
1908180 AGCTGTGGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.20, C:0.28, G:0.26, T:0.26
Consensus pattern (23 bp):
CGGTGCAATTCTACGCGGCACTC
Found at i:1908972 original size:22 final size:22
Alignment explanation
Indices: 1908947--1909001 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
1908937 TCAGGAGTTA
* *
1908947 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* * *
1908969 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTC
*
1908991 CGGGAGTTATA
1 CAGGAGTTATA
1909002 ACAGCTAAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:1915254 original size:19 final size:21
Alignment explanation
Indices: 1915209--1915266 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 21
1915199 AATCCCATGA
1915209 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC-TT-AAG
1915232 GGGAACCGATTCCCCC-T-AG
1 GGGAACCGATTCCCCCTTAAG
* *
1915251 GGGAATCGATACCCCC
1 GGGAACCGATTCCCCC
1915267 CTGGGGTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.48
21 1 0.03
23 16 0.48
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.17
Consensus pattern (21 bp):
GGGAACCGATTCCCCCTTAAG
Found at i:1915268 original size:20 final size:19
Alignment explanation
Indices: 1915230--1915272 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
1915220 CCCCCTTTGA
*
1915230 AGGGGAACCGATTCCCCCT
1 AGGGGAACCGATCCCCCCT
*
1915249 AGGGGAATCGATACCCCCCT
1 AGGGGAACCGAT-CCCCCCT
1915269 -GGGG
1 AGGGG
1915273 TTCTGGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.21, C:0.33, G:0.33, T:0.14
Consensus pattern (19 bp):
AGGGGAACCGATCCCCCCT
Found at i:1916917 original size:12 final size:12
Alignment explanation
Indices: 1916902--1916931 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1916892 AAGATGAGCC
1916902 TGAGCAGCCCGA
1 TGAGCAGCCCGA
1916914 TGAGCAGCCCGA
1 TGAGCAGCCCGA
*
1916926 GGAGCA
1 TGAGCA
1916932 AGCACAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.30, G:0.37, T:0.07
Consensus pattern (12 bp):
TGAGCAGCCCGA
Found at i:1920421 original size:19 final size:20
Alignment explanation
Indices: 1920388--1920425 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1920378 CACAAAATCA
*
1920388 TTTTTTAAAATTTCATTTTG
1 TTTTTCAAAATTTCATTTTG
1920408 TTTTTCAAAA-TTCATTTT
1 TTTTTCAAAATTTCATTTT
1920426 TTCTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTTCAAAATTTCATTTTG
Found at i:1920436 original size:19 final size:19
Alignment explanation
Indices: 1920388--1920437 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
1920378 CACAAAATCA
1920388 TTTTTTAAAATTTCATTTTG
1 TTTTTTAAAA-TTCATTTTG
*
1920408 TTTTTCAAAATTCATTTT-
1 TTTTTTAAAATTCATTTTG
1920426 TTCTTTTAAAAT
1 TT-TTTTAAAAT
1920438 AAAATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 2 0.07
19 16 0.59
20 9 0.33
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTTTAAAATTCATTTTG
Done.