genome.fa.s793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000793.1 Hibiscus syriacus cultivar Beakdansim tig00001535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109224

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6890--6949	31	2.0	30	83	9	77	65	3	5	26	1.29
8998--9045	2	24.0	2	100	0	96	50	0	0	50	1.00
13370--13428	21	2.8	21	76	5	57	32	20	13	33	1.91
20931--20975	23	2.0	23	90	0	72	24	26	26	22	2.00
20943--21256	149	2.1	148	90	1	486	35	21	16	26	1.94
22664--22831	64	2.6	63	84	7	203	28	20	17	32	1.96
27895--28055	64	2.5	63	85	8	200	26	21	18	33	1.96
44601--44643	20	2.2	20	91	0	68	34	20	11	32	1.89
52346--52380	16	2.3	15	90	9	54	60	2	5	31	1.35
53014--53052	2	20.0	2	94	5	71	51	0	0	48	1.00
54204--54544	135	2.5	134	85	5	422	29	18	23	28	1.97
55639--55678	15	2.6	15	88	4	53	7	10	0	82	0.84
55662--55686	6	4.2	6	100	0	50	0	16	0	84	0.63
59164--59207	21	2.1	20	87	8	61	50	4	13	31	1.62
66825--66849	13	1.9	13	100	0	50	76	0	0	24	0.80
67488--67960	41	11.6	41	82	4	582	24	20	19	35	1.95
67488--67960	124	3.9	125	86	3	635	24	20	19	35	1.95
68703--68795	21	4.5	21	78	4	100	40	17	23	18	1.90
68784--68899	20	5.7	20	81	8	108	31	25	18	24	1.97
68703--68795	41	2.3	41	96	0	168	40	17	23	18	1.90
69393--69441	20	2.5	20	89	0	71	18	18	26	36	1.94
70771--70815	18	2.5	18	88	0	72	26	44	15	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71291--71357	20	3.4	20	81	2	73	38	23	22	14	1.92
71330--71455	14	7.6	18	70	21	96	46	22	18	13	1.84
71330--71452	32	3.8	33	93	2	205	47	21	17	13	1.82
71469--71526	14	3.9	14	79	16	71	8	17	25	48	1.75
71464--71542	32	2.4	33	95	2	142	10	18	24	46	1.80
71527--71582	20	2.8	19	86	7	76	16	25	23	35	1.94
73450--73485	14	2.6	14	90	0	54	30	0	22	47	1.52
73602--73664	19	3.6	17	89	10	69	49	17	20	12	1.79
73602--73650	19	2.6	19	100	0	98	48	16	20	14	1.80
73676--73731	20	2.8	20	94	0	94	17	23	23	35	1.95
74765--74818	24	2.2	24	90	0	81	24	16	20	38	1.92
77309--77439	19	7.7	19	66	23	94	42	19	22	14	1.88
77309--77435	33	3.8	33	88	4	202	42	19	22	14	1.88
77310--77442	66	2.0	66	97	0	248	41	19	22	16	1.90
77450--77506	14	3.7	14	75	20	60	8	24	22	43	1.81
77464--77524	19	3.5	19	72	21	69	11	22	21	44	1.84
77435--77524	33	2.7	33	92	0	144	13	21	21	44	1.85
77630--77666	14	2.6	14	91	0	65	45	24	0	29	1.53
78629--78761	19	7.4	19	70	18	79	42	21	24	12	1.87
78646--78744	33	3.0	33	89	1	153	39	22	26	12	1.89
78716--78766	19	2.7	19	96	0	93	45	21	21	11	1.84
78762--78828	19	3.5	19	79	2	80	8	16	22	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79339--79411	20	3.7	20	96	0	128	27	20	28	23	1.99
79420--79473	20	2.7	20	97	0	99	25	18	24	31	1.97
79360--79476	61	1.9	61	85	0	162	23	17	24	33	1.97
79340--79472	40	3.3	40	80	6	142	25	18	26	29	1.98
79360--79494	61	2.2	61	81	5	157	22	19	24	33	1.97
79591--79636	19	2.3	20	81	7	58	26	17	28	28	1.98
82162--82275	59	1.9	59	96	0	210	31	14	9	44	1.77
83126--83409	43	6.7	43	86	3	342	22	24	20	32	1.98
87820--87888	30	2.3	30	87	0	93	33	23	17	26	1.96
92350--92406	30	1.9	30	100	0	114	31	21	21	26	1.98
92411--92504	31	3.0	31	72	14	93	29	18	17	35	1.93
92411--92501	32	2.9	32	76	14	98	29	17	17	35	1.93
98216--98351	60	2.3	60	83	3	168	41	5	20	32	1.74
100462--100493	15	2.1	15	94	0	55	75	3	0	21	0.95
100837--100966	64	2.0	64	92	0	215	42	10	14	33	1.79
100998--101694	198	3.5	195	82	7	791	30	15	14	39	1.88
105237--105276	21	1.9	21	84	0	53	47	15	12	25	1.80
105040--106205	199	5.8	197	78	5	1149	31	16	13	38	1.88
105040--106205	400	2.9	397	88	3	1644	31	16	13	38	1.88
106209--106247	15	2.6	15	91	0	60	41	7	10	41	1.68
106502--106554	25	2.1	25	100	0	106	49	11	3	35	1.57
106513--106567	25	2.2	25	86	0	74	49	18	5	27	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107346--107394	19	2.7	17	84	9	53	26	20	28	24	1.99
107365--107525	65	2.5	65	86	5	211	28	19	21	29	1.98
107366--107575	65	3.3	62	80	12	194	27	19	22	30	1.98

Tables:   1

The End!