Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007930.1 Hibiscus syriacus cultivar Beakdansim tig00110338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2280901
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 12
Found at i:365875 original size:8 final size:8
Alignment explanation
Indices: 365862--365904 Score: 59
Period size: 8 Copynumber: 5.0 Consensus size: 8
365852 CATTTCGTTA
365862 TATTTTTT
1 TATTTTTT
365870 TATTTTTT
1 TATTTTTT
365878 TATTTTCGTTT
1 TA-TTT--TTT
365889 TATTTTTT
1 TATTTTTT
365897 TATTTTTT
1 TATTTTTT
365905 AGTGAACTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
8 21 0.66
9 3 0.09
10 3 0.09
11 5 0.16
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.84
Consensus pattern (8 bp):
TATTTTTT
Found at i:367871 original size:76 final size:75
Alignment explanation
Indices: 367744--367908 Score: 242
Period size: 76 Copynumber: 2.2 Consensus size: 75
367734 TTAAACTCAA
*
367744 ATTTAGGATAATATTTTAAACATTATATTTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTA
1 ATTTAGGATATTATTTTAAACATTATATTTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGTA
367809 TTTTAATTAAG
65 TTTTAATTAAG
* * * *
367820 TTTTAGGATATTATTTT-TATATTTTATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTA
1 ATTTAGGATATTATTTTAAACATTATAT-TTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTA
*
367884 TTTTAATTAGG
65 TTTTAATTAAG
*
367895 ATTTAGAATATTAT
1 ATTTAGGATATTAT
367909 ATTATTTTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
75 37 0.46
76 43 0.54
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.56
Consensus pattern (75 bp):
ATTTAGGATATTATTTTAAACATTATATTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
TTTAATTAAG
Found at i:367894 original size:19 final size:19
Alignment explanation
Indices: 367866--367928 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
367856 TGTATTTTAG
*
367866 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
* *
367885 TTTAATTAGGATTTAGAAT
1 TTTAATTAGGTTTTAGTAT
* **
367904 ATTATATTATTTTTTAGGTAT
1 TTTA-ATTAGGTTTTA-GTAT
367925 TTTA
1 TTTA
367929 GTTTAAATAG
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 19 0.58
20 8 0.24
21 6 0.18
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.56
Consensus pattern (19 bp):
TTTAATTAGGTTTTAGTAT
Found at i:368667 original size:16 final size:17
Alignment explanation
Indices: 368625--368676 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
368615 AAAAATCCCC
*
368625 TTTTATATTTATTACTA
1 TTTTATATTTATTATTA
*
368642 -TTAATATTTATTATTA
1 TTTTATATTTATTATTA
368658 TTTTAT-TTTATT-TTA
1 TTTTATATTTATTATTA
368673 TTTT
1 TTTT
368677 TTTAATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 7 0.23
16 20 0.65
17 4 0.13
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTATATTTATTATTA
Found at i:369195 original size:46 final size:46
Alignment explanation
Indices: 369145--369238 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 46
369135 GCCACACAAA
* *
369145 AAATGTCCCAAAGGACCACATAGTATTGTCCCGAAGGACCGAGTAG
1 AAATGTCCCAAAGGACCACATAGAATTATCCCGAAGGACCGAGTAG
* ** * *
369191 AAATGTCCCGAAGGACCATGTAGAATTATCCCGAAGGACTGCGTAG
1 AAATGTCCCAAAGGACCACATAGAATTATCCCGAAGGACCGAGTAG
369237 AA
1 AA
369239 CCCTTAACTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (46 bp):
AAATGTCCCAAAGGACCACATAGAATTATCCCGAAGGACCGAGTAG
Found at i:369197 original size:23 final size:23
Alignment explanation
Indices: 369145--369238 Score: 91
Period size: 23 Copynumber: 4.1 Consensus size: 23
369135 GCCACACAAA
* *
369145 AAATGTCCCAAAGGACCACATAG
1 AAATGTCCCGAAGGACCACGTAG
* *
369168 TATTGTCCCGAAGGACCGA-GTAG
1 AAATGTCCCGAAGGACC-ACGTAG
*
369191 AAATGTCCCGAAGGACCATGTAG
1 AAATGTCCCGAAGGACCACGTAG
* * **
369214 AATTATCCCGAAGGACTGCGTAG
1 AAATGTCCCGAAGGACCACGTAG
369237 AA
1 AA
369239 CCCTTAACTC
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
22 1 0.02
23 56 0.97
24 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (23 bp):
AAATGTCCCGAAGGACCACGTAG
Found at i:381236 original size:23 final size:23
Alignment explanation
Indices: 381210--381273 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
381200 CAGCTCATAT
381210 AATTGCACCGGAGTGCCACGTAG
1 AATTGCACCGGAGTGCCACGTAG
*
381233 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACCGGAGTGCCACGTAG
**
381256 AATTGCACCATAGTGCCA
1 AATTGCACCGGAGTGCCA
381274 TATAATAATG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.19
Consensus pattern (23 bp):
AATTGCACCGGAGTGCCACGTAG
Found at i:381463 original size:103 final size:103
Alignment explanation
Indices: 381284--381506 Score: 446
Period size: 103 Copynumber: 2.2 Consensus size: 103
381274 TATAATAATG
381284 TCCCGAAGGACCACATATCACTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCT
1 TCCCGAAGGACCACATATCACTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCT
381349 CACCAGACTTCACACATGTTCCAAAGAATACATATATA
66 CACCAGACTTCACACATGTTCCAAAGAATACATATATA
381387 TCCCGAAGGACCACATATCACTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCT
1 TCCCGAAGGACCACATATCACTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCT
381452 CACCAGACTTCACACATGTTCCAAAGAATACATATATA
66 CACCAGACTTCACACATGTTCCAAAGAATACATATATA
381490 TCCCGAAGGACCACATA
1 TCCCGAAGGACCACATA
381507 GACCCTCGAC
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 120 1.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (103 bp):
TCCCGAAGGACCACATATCACTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCT
CACCAGACTTCACACATGTTCCAAAGAATACATATATA
Found at i:382382 original size:64 final size:64
Alignment explanation
Indices: 382248--382469 Score: 240
Period size: 64 Copynumber: 3.5 Consensus size: 64
382238 TAATGAAGGT
* * * * * * *
382248 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAATGTATTCGATG-TT--GTATTACTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACAAATTGCATTCGATGTTTCCTTATTAATGGG
* *
382309 ATGCATCGATGCA-TGCCTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGGG
1 ATGCATCGATGCACT-ACTTATGCATCGATGCACAAATTGCATTCGATGTTTCCTTATTAATGGG
** **
382373 ATGCATCGATGCACTACTTATGCATCGATGCACAAATTGCATTCGATGTATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCACAAATTGCATTCGATGT-TTCCTTATTAATGGG
**
382436 AGTGCATCGATGCACTACCAATGCATCGATGCAC
1 A-TGCATCGATGCACTACTTATGCATCGATGCAC
382470 CTTCAAACAA
Statistics
Matches: 137, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
60 1 0.01
61 39 0.28
62 2 0.01
63 2 0.01
64 88 0.64
65 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACAAATTGCATTCGATGTTTCCTTATTAATGGG
Found at i:386920 original size:23 final size:23
Alignment explanation
Indices: 386894--386957 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
386884 CAGCTCATAT
386894 AATTGCACCGAAGTGCCACGTAG
1 AATTGCACCGAAGTGCCACGTAG
* *
386917 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACCGAAGTGCCACGTAG
*
386940 AATTGCACCGTAGTGCCA
1 AATTGCACCGAAGTGCCA
386958 TATAATAATG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.19
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCACGTAG
Found at i:387140 original size:101 final size:100
Alignment explanation
Indices: 386968--387185 Score: 368
Period size: 101 Copynumber: 2.2 Consensus size: 100
386958 TATAATAATG
386968 TCCCGAAGGACCAC-TATCATCCTTAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCA
1 TCCCGAAGGACCACATATCATCCTTAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCA
387032 CCAGACTTCACACATGTTCC-AAAGAATACATATA
66 CCAGACTTCACACATGTTCCAAAAGAATACATATA
*
387066 TCCCGAAGGACCACATATCACTCCTTAAGAATCATATCCATATACTAGGGATCAAGTATGTGTCT
1 TCCCGAAGGACCACATATCA-TCCTT-AGAATCATATACATATACTAGGGATCAAGTATGTGTCT
*
387131 CACCAGACTTTACACATGTTCCAAAAGAATACATATA
64 CACCAGACTTCACACATGTTCCAAAAGAATACATATA
*
387168 TATCCGAAGGACCACATA
1 T-CCCGAAGGACCACATA
387186 GACCCTCGAC
Statistics
Matches: 112, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
98 14 0.12
99 5 0.04
100 5 0.04
101 58 0.52
102 15 0.13
103 15 0.13
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (100 bp):
TCCCGAAGGACCACATATCATCCTTAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCA
CCAGACTTCACACATGTTCCAAAAGAATACATATA
Found at i:388082 original size:17 final size:17
Alignment explanation
Indices: 388043--388075 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
388033 TATTAATGGG
*
388043 ATGCATCGATGCACTAT
1 ATGCATCGATGCACAAT
388060 ATGCATCGATGCACAA
1 ATGCATCGATGCACAA
388076 ATTGCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (17 bp):
ATGCATCGATGCACAAT
Found at i:390187 original size:95 final size:96
Alignment explanation
Indices: 390127--390323 Score: 362
Period size: 95 Copynumber: 2.1 Consensus size: 96
390117 TATTCAAGTT
390127 TCCTAATTGATATATTATT-CCATTTCATTCTATAATTCAATCTTATTTAGTTCCCTTAACTCTC
1 TCCTAATTGATATATTATTCCCATTTCATTCTATAATTCAATCTTATTTAGTTCCCTTAACTCTC
390191 ATTAAATCAAAAAGCTCTATTATACTAATTC
66 ATTAAATCAAAAAGCTCTATTATACTAATTC
390222 TCCTAATTGATATATTATTCCCATTTCATTCTATAATTCAATCTTATTTAGTTCCCTTAACTC-C
1 TCCTAATTGATATATTATTCCCATTTCATTCTATAATTCAATCTTATTTAGTTCCCTTAACTCTC
*
390286 ATTAAACCAAAAAGCTCTATTATACTAATTC
66 ATTAAATCAAAAAGCTCTATTATACTAATTC
*
390317 TCATAAT
1 TCCTAAT
390324 GGATCATACC
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
95 56 0.57
96 43 0.43
ACGTcount: A:0.33, C:0.21, G:0.03, T:0.43
Consensus pattern (96 bp):
TCCTAATTGATATATTATTCCCATTTCATTCTATAATTCAATCTTATTTAGTTCCCTTAACTCTC
ATTAAATCAAAAAGCTCTATTATACTAATTC
Found at i:394009 original size:34 final size:34
Alignment explanation
Indices: 393966--394039 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
393956 TGATTTTTAG
*
393966 TTATCAGATATTTACATATATCATATGATTACAA
1 TTATCAGATATTTACAGATATCATATGATTACAA
** *
394000 TTATCAGATATTTACAGATATCATATTTTTACAG
1 TTATCAGATATTTACAGATATCATATGATTACAA
394034 TTATCA
1 TTATCA
394040 AACACATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (34 bp):
TTATCAGATATTTACAGATATCATATGATTACAA
Found at i:394033 original size:17 final size:17
Alignment explanation
Indices: 393967--394039 Score: 69
Period size: 17 Copynumber: 4.3 Consensus size: 17
393957 GATTTTTAGT
* *
393967 TATCAGATATTTACATA
1 TATCATATATTTACAGA
393984 TATCATATGA-TTACA-A
1 TATCATAT-ATTTACAGA
*
394000 TTATCAGATATTTACAGA
1 -TATCATATATTTACAGA
* *
394018 TATCATATTTTTACAGT
1 TATCATATATTTACAGA
394035 TATCA
1 TATCA
394040 AACACATATT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
16 2 0.04
17 43 0.91
18 2 0.04
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.42
Consensus pattern (17 bp):
TATCATATATTTACAGA
Found at i:396909 original size:17 final size:16
Alignment explanation
Indices: 396882--396915 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
396872 AATATTAAAA
396882 ATAAATAAAAATATTT
1 ATAAATAAAAATATTT
*
396898 ATAAAGTAAAAATTTTT
1 ATAAA-TAAAAATATTT
396915 A
1 A
396916 ACATCATCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
ATAAATAAAAATATTT
Found at i:397432 original size:18 final size:18
Alignment explanation
Indices: 397409--397443 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
397399 ATTCAATAAC
* *
397409 AAATAAGAACAATTGAGA
1 AAATAAAAACAAATGAGA
397427 AAATAAAAACAAATGAG
1 AAATAAAAACAAATGAG
397444 TACAAAAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.06, G:0.14, T:0.14
Consensus pattern (18 bp):
AAATAAAAACAAATGAGA
Found at i:407919 original size:20 final size:20
Alignment explanation
Indices: 407856--407926 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
407846 TGCAATTTGG
407856 GTATCGATACT-GATGTAG-
1 GTATCGATACTGGATGTAGA
* * * *
407874 GTATCGGTACCATGAAGGGA-A
1 GTATCGATA-C-TGGATGTAGA
*
407895 GTATCGGTACTGGATGTAGA
1 GTATCGATACTGGATGTAGA
407915 GTATCGATACTG
1 GTATCGATACTG
407927 TTCAGCCTAA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
18 8 0.20
19 6 0.15
20 14 0.35
21 12 0.30
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.28
Consensus pattern (20 bp):
GTATCGATACTGGATGTAGA
Found at i:408465 original size:23 final size:23
Alignment explanation
Indices: 408417--408496 Score: 88
Period size: 23 Copynumber: 3.5 Consensus size: 23
408407 GAGTTGAGGG
* * * *
408417 ATTCTATGAGGTCCTTTGGAATA
1 ATTCTATGTGGTCCTTCGGGACA
*
408440 ATTCTATGTGGTTCTTCGGGACA
1 ATTCTATGTGGTCCTTCGGGACA
* *
408463 ATTCTACGCGGTCCTTCGGGACA
1 ATTCTATGTGGTCCTTCGGGACA
*
408486 AATCTATGTGG
1 ATTCTATGTGG
408497 CACTTTGATG
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (23 bp):
ATTCTATGTGGTCCTTCGGGACA
Found at i:414550 original size:20 final size:20
Alignment explanation
Indices: 414522--414655 Score: 135
Period size: 20 Copynumber: 6.7 Consensus size: 20
414512 AATTGGGAAA
* *
414522 ATCGTAATGCGATACCGACT
1 ATCGCAATGCGATACTGACT
414542 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
414562 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
414582 ATCGCAATACGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
414603 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
414623 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
* *
414643 TTCGCAACGCGAT
1 ATCGCAATGCGAT
414656 TTACATAGCG
Statistics
Matches: 98, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.02
20 82 0.84
21 12 0.12
22 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:414619 original size:41 final size:40
Alignment explanation
Indices: 414532--414629 Score: 108
Period size: 41 Copynumber: 2.4 Consensus size: 40
414522 ATCGTAATGC
* * * * * *
414532 GATACCGACTATCGCAATGCGATACTGACTATCGCAATGC
1 GATACTGACTATCGCAATACGATAATGACAATCGCAACGA
414572 GATACTGACTATCGCAATACGATAAT-ACAAAATCGCAACGA
1 GATACTGACTATCGCAATACGATAATGAC--AATCGCAACGA
*
414613 GATACTGACTTTCGCAA
1 GATACTGACTATCGCAA
414630 CGCGATTCTG
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.04
40 23 0.47
41 24 0.49
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.22
Consensus pattern (40 bp):
GATACTGACTATCGCAATACGATAATGACAATCGCAACGA
Found at i:415234 original size:19 final size:19
Alignment explanation
Indices: 415174--415254 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
415164 TTCGAGAATG
415174 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
** *
415194 ACTATCGCAA--CGAGAT-
1 AAAATCGCAACGCGAAATA
415210 --AATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
415227 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
415246 AAAATCGCA
1 AAAATCGCA
415255 TTGCGATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
14 7 0.14
16 5 0.10
17 4 0.08
18 1 0.02
19 24 0.49
20 8 0.16
ACGTcount: A:0.47, C:0.25, G:0.17, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:415296 original size:20 final size:19
Alignment explanation
Indices: 415250--415415 Score: 136
Period size: 20 Copynumber: 9.1 Consensus size: 19
415240 GAAACCAAAA
*
415250 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
415269 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
415288 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
415308 TCGCGTTGCGA--TT-GTT
1 TCGCGTTGCGATTTTCATT
* **
415324 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
415341 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
415355 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
415374 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
415394 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
415414 TC
1 TC
415416 AACCAAAAGA
Statistics
Matches: 118, Mismatches: 16, Indels: 26
0.74 0.10 0.16
Matches are distributed among these distances:
14 16 0.14
15 1 0.01
16 6 0.05
17 7 0.06
18 1 0.01
19 37 0.31
20 49 0.42
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:415331 original size:39 final size:39
Alignment explanation
Indices: 415255--415331 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
415245 CAAAATCGCA
**
415255 TTGCGATTTTCATTTCGCGTTGCGATTTTTATTTCGCGG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTTAGGTCGCGG
415294 TTGCGATTTTCATTTCGCGTTGCGATTGTTT-GGTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATT-TTTAGGTCGCG
415332 ATAGTCATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 32 0.91
40 3 0.09
ACGTcount: A:0.09, C:0.18, G:0.26, T:0.47
Consensus pattern (39 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTTAGGTCGCGG
Found at i:415340 original size:33 final size:33
Alignment explanation
Indices: 415303--415390 Score: 131
Period size: 33 Copynumber: 2.6 Consensus size: 33
415293 GTTGCGATTT
* * *
415303 TCATTTCGCGTTGCGATTGTTTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
415336 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
415369 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
415391 ATTATCTCGT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 35 0.70
34 15 0.30
ACGTcount: A:0.11, C:0.24, G:0.25, T:0.40
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:417476 original size:42 final size:42
Alignment explanation
Indices: 417416--417508 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
417406 GCCCGAATCG
* * *
417416 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
417458 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* *
417500 ACTGTCATC
1 CCTATCATC
417509 GTTGAAGCGG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.22, C:0.39, G:0.16, T:0.24
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:418916 original size:14 final size:14
Alignment explanation
Indices: 418897--418932 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
418887 ATTGTTTAAT
418897 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
418911 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
418925 TGATTTGT
1 TGATTTGT
418933 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:419133 original size:19 final size:19
Alignment explanation
Indices: 419111--419261 Score: 62
Period size: 19 Copynumber: 8.7 Consensus size: 19
419101 CGAAATTAAA
419111 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
419130 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* * *
419145 -CCTCGTTGCGATTTTTAT
1 TTCGCGTTGCGATTTTCAT
* *
419163 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
419177 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
419196 TTCGCATTGTGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
419211 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
419229 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
419248 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
419262 GGACATTAAG
Statistics
Matches: 92, Mismatches: 24, Indels: 31
0.63 0.16 0.21
Matches are distributed among these distances:
14 27 0.29
16 5 0.05
17 6 0.07
19 44 0.48
20 10 0.11
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.43
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:419157 original size:33 final size:32
Alignment explanation
Indices: 419115--419241 Score: 175
Period size: 33 Copynumber: 3.9 Consensus size: 32
419105 ATTAAATTCG
419115 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
* **
419148 CGTTGCGATTTTTATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
*
419181 CGTTGCGATTTTCATTTCGCATTGTGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
419214 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
419242 AGTAATTTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
31 3 0.04
33 76 0.93
35 3 0.04
ACGTcount: A:0.15, C:0.21, G:0.20, T:0.44
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:419204 original size:66 final size:66
Alignment explanation
Indices: 419108--419240 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
419098 ACGCGAAATT
* *
419108 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTTATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
419173 G
66 G
* *
419174 AAATTAGCGTTGCGATTTTCATTTCGCATTGTGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
419239 G
66 G
419240 A
1 A
419241 TAGTAATTTC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.43
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:421074 original size:24 final size:24
Alignment explanation
Indices: 421047--421093 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
421037 CAAAATCCGT
*
421047 GTATTGACCAATATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
*
421071 GTATTGACCAAGATCAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
421094 AATACTGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:421102 original size:24 final size:24
Alignment explanation
Indices: 421051--421102 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
421041 ATCCGTGTAT
* ** *
421051 TGACCAATATCAAAGTTCGGGTAT
1 TGACCAAGATCAAAGTTCGAATAC
*
421075 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTTCGAATAC
421099 TGAC
1 TGAC
421103 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (24 bp):
TGACCAAGATCAAAGTTCGAATAC
Found at i:422221 original size:20 final size:20
Alignment explanation
Indices: 422144--422214 Score: 133
Period size: 20 Copynumber: 3.5 Consensus size: 20
422134 ATTCATTTGA
422144 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
422164 CTATCACAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
422184 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
422204 CTATCGCAACG
1 CTATCGCAACG
422215 AGGAAATCGC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.35, C:0.27, G:0.23, T:0.15
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:422306 original size:33 final size:34
Alignment explanation
Indices: 422240--422318 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 34
422230 GAAATGAAAA
* ***
422240 TCGCATTGCAATTTTCTCGTTGCGATTTTCA-TT
1 TCGCATTGCGATTTTCTCGTTGCGATAGCCATTT
*
422273 TCGCATTGCGATTTTCTCGTTGTGATAGCCATTT
1 TCGCATTGCGATTTTCTCGTTGCGATAGCCATTT
*
422307 TCGCGTTGCGAT
1 TCGCATTGCGAT
422319 AGTCTGTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 26 0.67
34 13 0.33
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.44
Consensus pattern (34 bp):
TCGCATTGCGATTTTCTCGTTGCGATAGCCATTT
Found at i:422308 original size:20 final size:20
Alignment explanation
Indices: 422283--422320 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
422273 TCGCATTGCG
* *
422283 ATTTTCTCGTTGTGATAGCC
1 ATTTTCGCGTTGCGATAGCC
422303 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
422321 TCTGTTTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.42
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:422425 original size:14 final size:14
Alignment explanation
Indices: 422406--422442 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
422396 CATCAATTAA
422406 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
422420 ACAAATCATCTTTT
1 ACAAATCAACATTT
422434 ACAAATCAA
1 ACAAATCAA
422443 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:424348 original size:20 final size:19
Alignment explanation
Indices: 424313--424379 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
424303 GAAACTTAAA
424313 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
424332 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
424352 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
424371 ATCGCAACG
1 ATCGCAACG
424380 ATAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:424387 original size:14 final size:14
Alignment explanation
Indices: 424368--424425 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
424358 ATGCGAAATG
424368 AAAATCGCAACGAT
1 AAAATCGCAACGAT
424382 AAAATCGCAACGCGAAAT
1 AAAATCGCAA--CG--AT
* *
424400 GAAATCGCAACGAC
1 AAAATCGCAACGAT
424414 AAAATCGCAACG
1 AAAATCGCAACG
424426 CGAAACACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 22 0.59
16 4 0.11
18 11 0.30
ACGTcount: A:0.48, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAT
Found at i:424410 original size:32 final size:33
Alignment explanation
Indices: 424352--424430 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
424342 GGAAATGGCT
* *
424352 ATCGCAATGCGAAATGAAAATCGCAACGATAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
424385 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
424417 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
424431 CACAAATCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 29 0.66
33 15 0.34
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:424478 original size:14 final size:14
Alignment explanation
Indices: 424459--424516 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
424449 TTTCATTTCG
424459 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
424473 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
424489 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
424505 CGTTGCGATTTT
1 CGTTGCGATTTT
424517 CATTTCACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:424528 original size:33 final size:33
Alignment explanation
Indices: 424442--424532 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
424432 ACAAATCGCA
*
424442 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
424475 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
*
424507 TTGCGATTTTCATTTCACATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
424533 AGCCATTTCC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 31 0.56
33 24 0.44
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:424539 original size:19 final size:20
Alignment explanation
Indices: 424517--424560 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
424507 TTGCGATTTT
424517 CATTT-CACATTGCGATAGC
1 CATTTCCACATTGCGATAGC
* * *
424536 CATTTCCGCGTTGCGATAGT
1 CATTTCCACATTGCGATAGC
424556 CATTT
1 CATTT
424561 TCGTGTTGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.36
Consensus pattern (20 bp):
CATTTCCACATTGCGATAGC
Found at i:424551 original size:20 final size:20
Alignment explanation
Indices: 424526--424571 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
424516 TCATTTCACA
424526 TTGCGATAGCCATTTCCGCG
1 TTGCGATAGCCATTTCCGCG
* * *
424546 TTGCGATAGTCATTTTCGTG
1 TTGCGATAGCCATTTCCGCG
424566 TTGCGA
1 TTGCGA
424572 AAGTAAACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCGCG
Found at i:425078 original size:18 final size:18
Alignment explanation
Indices: 425052--425096 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
425042 GTCGATCAGA
*
425052 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
425070 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
425088 TGATGGCTC
1 TGATGGCTC
425097 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:426430 original size:20 final size:20
Alignment explanation
Indices: 426387--426424 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
426377 AATAGATTCT
426387 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
426407 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
426425 GAGAAACTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:426701 original size:22 final size:22
Alignment explanation
Indices: 426674--426717 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
426664 GATGGAGATA
426674 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
426696 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
426718 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:426930 original size:20 final size:20
Alignment explanation
Indices: 426905--426998 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
426895 GATTATGTAT
426905 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
426925 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
426945 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
426966 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
426986 TATCGCATTGCGA
1 TATCGCGTTGCGA
426999 TTTTCCCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:426999 original size:20 final size:20
Alignment explanation
Indices: 426885--426999 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
426875 CGCTTTGAAA
*
426885 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
426906 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
426926 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
426946 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
426967 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
426987 ATCGCATTGCGAT
1 ATCGCATTGCGAT
427000 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:427017 original size:21 final size:21
Alignment explanation
Indices: 426988--427080 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
426978 ATAGTCAGTA
426988 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
427009 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
427029 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
427050 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
427070 TCGCATTGCGA
1 TCGCATTGCGA
427081 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:427018 original size:41 final size:41
Alignment explanation
Indices: 426927--427061 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
426917 AAAGTCAGTA
* * * ** *
426927 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
426967 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
427009 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
427050 TCGCGTTGCGAT
1 TCGCGTTGCGAT
427062 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:427062 original size:41 final size:41
Alignment explanation
Indices: 426988--427080 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
426978 ATAGTCAGTA
426988 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
427029 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
427070 TCGCATTGCGA
1 TCGCATTGCGA
427081 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:429772 original size:2 final size:2
Alignment explanation
Indices: 429761--429795 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
429751 ATTAAACCAC
429761 CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
429796 TTTTACGGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:430377 original size:18 final size:18
Alignment explanation
Indices: 430354--430389 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
430344 ATAGAAAATG
430354 ATACCTTTGTTAAACTTA
1 ATACCTTTGTTAAACTTA
430372 ATACCTTTGTTAAACTTA
1 ATACCTTTGTTAAACTTA
430390 GAAGTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (18 bp):
ATACCTTTGTTAAACTTA
Found at i:435747 original size:2 final size:2
Alignment explanation
Indices: 435740--435764 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
435730 TCCCTCAATG
435740 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
435765 GCATTCCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:439677 original size:15 final size:14
Alignment explanation
Indices: 439643--439674 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
439633 CAAAAAAAGT
*
439643 AAAATAAAAATTGA
1 AAAATAAAAATTAA
439657 AAAATAAAAATTAA
1 AAAATAAAAATTAA
439671 AAAA
1 AAAA
439675 ATATTACCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (14 bp):
AAAATAAAAATTAA
Found at i:440460 original size:21 final size:21
Alignment explanation
Indices: 440409--440460 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
440399 GACCCATTAC
*
440409 AATATGTTATATTATATAATATA
1 AATAT-TT-TATTATATAACATA
*
440432 AATGTTTTATTATATAACATA
1 AATATTTTATTATATAACATA
*
440453 CATATTTT
1 AATATTTT
440461 TTTACTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 19 0.76
22 2 0.08
23 4 0.16
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (21 bp):
AATATTTTATTATATAACATA
Found at i:440462 original size:23 final size:21
Alignment explanation
Indices: 440412--440452 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
440402 CCATTACAAT
* *
440412 ATGTTATATTATATAATATAA
1 ATGTTTTATTATATAACATAA
440433 ATGTTTTATTATATAACATA
1 ATGTTTTATTATATAACATA
440453 CATATTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (21 bp):
ATGTTTTATTATATAACATAA
Found at i:441516 original size:19 final size:18
Alignment explanation
Indices: 441492--441545 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
441482 CTTTTCTTAT
441492 TTTATTCATTTTATTTTAA
1 TTTATT-ATTTTATTTTAA
*
441511 TTTATT-TATTTATTATTTA
1 TTTATTAT-TTTATT-TTAA
*
441530 TTTATTATTTTCTTTT
1 TTTATTATTTTATTTT
441546 TTGCTAACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 1 0.03
18 8 0.27
19 20 0.67
20 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTATTTTATTTTAA
Found at i:441526 original size:11 final size:11
Alignment explanation
Indices: 441512--441539 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
441502 TTATTTTAAT
441512 TTATTTATTTA
1 TTATTTATTTA
441523 TTATTTATTTA
1 TTATTTATTTA
441534 TTATTT
1 TTATTT
441540 TCTTTTTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:441528 original size:15 final size:14
Alignment explanation
Indices: 441488--441535 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
441478 TTTTCTTTTC
*
441488 TTATTTT-ATTCATT
1 TTATTTTAATTTA-T
441502 TTATTTTAATTTAT
1 TTATTTTAATTTAT
*
441516 TTATTTATTATTTAT
1 TTATTT-TAATTTAT
441531 TTATT
1 TTATT
441536 ATTTTCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 14 0.47
15 16 0.53
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTTTAATTTAT
Found at i:447202 original size:36 final size:36
Alignment explanation
Indices: 447150--447266 Score: 198
Period size: 36 Copynumber: 3.2 Consensus size: 36
447140 TAATTTACTC
447150 AAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT
1 AAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTT
*
447187 AAAACAAATTTTGTCTCTCTTGAGACATTTTCTCTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
*
447223 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
1 AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
*
447259 GAAACAAA
1 AAAACAAA
447267 ATCTTTGAAT
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
36 68 0.89
37 8 0.11
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (36 bp):
AAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
Found at i:447366 original size:102 final size:102
Alignment explanation
Indices: 447179--447368 Score: 274
Period size: 102 Copynumber: 1.9 Consensus size: 102
447169 CTTGAGACAG
* * *
447179 TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCTCTTAAAACAAATTTTGTCTCTCTT
1 TTTCTCTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAACAAATTTTGTCTCTCTT
*
447244 GAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGT
66 GAGACAGTTTCCCTTAAAACAAAATCTTTGAATATGT
* * ** *
447281 TTTC-CTTGAAACAAATTTCGTCTCCCTTGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCTCTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC-AAATTTTGTCTCTCT
*
447345 TGAGACAGTTTCTCTTAAAACAAA
65 TGAGACAGTTTCCCTTAAAACAAA
447369 TTTTGTCTCT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 37 0.48
102 40 0.52
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.41
Consensus pattern (102 bp):
TTTCTCTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAACAAATTTTGTCTCTCTT
GAGACAGTTTCCCTTAAAACAAAATCTTTGAATATGT
Found at i:447380 original size:36 final size:36
Alignment explanation
Indices: 447281--447438 Score: 189
Period size: 36 Copynumber: 4.4 Consensus size: 36
447271 TTGAATATGT
* * *
447281 TTTC-CTTGAAACAAATTTCGTCTCCCTTGAGACAA
1 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
* * *
447316 TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAG
1 TTTCTCTTGAAAC-AAATTTTGTCTCTCTTGAGACAG
*
447353 TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACA-
1 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
447388 TTT-T-TTAAAAACAAATTTTGTCTCTCTTGAGACAG
1 TTTCTCTT-GAAACAAATTTTGTCTCTCTTGAGACAG
*
447423 TTTCCCTTGAAACAAA
1 TTTCTCTTGAAACAAA
447439 ATCTTTGAAT
Statistics
Matches: 105, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
33 2 0.02
34 28 0.27
35 10 0.10
36 34 0.32
37 31 0.30
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.41
Consensus pattern (36 bp):
TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:447469 original size:172 final size:173
Alignment explanation
Indices: 447152--447531 Score: 674
Period size: 172 Copynumber: 2.2 Consensus size: 173
447142 ATTTACTCAA
447152 AACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACATTT
1 AACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACATTT
*
447217 TCTCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTT
66 TCTCTAAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTT
447282 TTCCTTGAAACAAATTTCGTCTCCCTTGAGACAATTTCTTTTGG
131 TTCCTTGAAACAAATTT-GTCTCCCTTGAGACAATTTCTTTTGG
*
447326 AACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACATTT
1 AACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACATTT
447391 T-T-TAAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTT
66 TCTCTAAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTT
* * *
447454 TTCCTTGATACAAATTTGTCTCCCTTGAGACAGTTTGTTTTGG
131 TTCCTTGAAACAAATTTGTCTCCCTTGAGACAATTTCTTTTGG
* *
447497 AACAAAGGTTTGTCTCTCTTGAGAAAGTTTCTCTT
1 AACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT
447532 GAAGCACCAA
Statistics
Matches: 198, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
171 56 0.28
172 76 0.38
173 1 0.01
174 65 0.33
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.41
Consensus pattern (173 bp):
AACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACATTT
TCTCTAAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTT
TTCCTTGAAACAAATTTGTCTCCCTTGAGACAATTTCTTTTGG
Found at i:447526 original size:101 final size:100
Alignment explanation
Indices: 447364--447549 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 100
447354 TTCTCTTAAA
* * *
447364 ACAAATTTTGTCTCTCTTGAGACATTTTTTAAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
1 ACAAATTTTGTCTCCCTTGAGACATTTTTTAAAAACAAAGTTTGTCTCTCTTGAGAAAGTTTCCC
447429 TTGAAACA-AAATCTTTGAATATGTTTTCCTTGAT
66 TTGAAACACAAATCTTTGAATATGTTTTCCTTGAT
***
447463 ACAAA-TTTGTCTCCCTTGAGACAGTTTGTTTTGGAACAAAGGTTTGTCTCTCTTGAGAAAGTTT
1 ACAAATTTTGTCTCCCTTGAGACA-TTT-TTTAAAAACAAA-GTTTGTCTCTCTTGAGAAAGTTT
* * *
447527 CTCTTGAAGCACCAATCTTTGAA
63 CCCTTGAAACACAAATCTTTGAA
447550 ATTGTTTCTC
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
98 17 0.23
99 8 0.11
100 9 0.12
101 30 0.41
102 10 0.14
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (100 bp):
ACAAATTTTGTCTCCCTTGAGACATTTTTTAAAAACAAAGTTTGTCTCTCTTGAGAAAGTTTCCC
TTGAAACACAAATCTTTGAATATGTTTTCCTTGAT
Found at i:447656 original size:34 final size:34
Alignment explanation
Indices: 447543--447701 Score: 150
Period size: 34 Copynumber: 4.8 Consensus size: 34
447533 AAGCACCAAT
* *
447543 CTTTGAAATTGTTTCTCCTGGAATAC-CAAAAAAAAC
1 CTTTGAAACTGTTTCT-CTTGAA-ACAC-AAAAAAAC
* * *
447579 CTTTGAAACAGTTT-TC-T--CACAAAAAAAAAC
1 CTTTGAAACTGTTTCTCTTGAAACACAAAAAAAC
* *
447609 C-TTGAGACAGTTTCTCTTGAAACACAAAAAAAC
1 CTTTGAAACTGTTTCTCTTGAAACACAAAAAAAC
* *
447642 CTTTGAAATTGTTTCTCTTGAAACAAAAAAAAAC
1 CTTTGAAACTGTTTCTCTTGAAACACAAAAAAAC
* *
447676 ATTTGAAAATGTTTCTCTTGAAACAC
1 CTTTGAAACTGTTTCTCTTGAAACAC
447702 CAATCCTTCG
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
29 11 0.11
30 13 0.13
31 1 0.01
33 12 0.12
34 52 0.51
35 1 0.01
36 12 0.12
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (34 bp):
CTTTGAAACTGTTTCTCTTGAAACACAAAAAAAC
Found at i:449215 original size:5 final size:5
Alignment explanation
Indices: 449205--449239 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
449195 TTTGATATTT
449205 TTTTA TTTTA TTTTA TTCTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTT
449240 TTTAACTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:449226 original size:16 final size:16
Alignment explanation
Indices: 449207--449237 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
449197 TGATATTTTT
449207 TTATTTTATTTTATTC
1 TTATTTTATTTTATTC
449223 TTATTTTATTTTATT
1 TTATTTTATTTTATT
449238 TTTTTAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTTATTTTATTC
Found at i:449302 original size:14 final size:13
Alignment explanation
Indices: 449263--449325 Score: 51
Period size: 14 Copynumber: 4.8 Consensus size: 13
449253 TTTACTTTTC
*
449263 TTATTTTATTCAT
1 TTATTTTATTTAT
*
449276 GTTATTTTCTTTAT
1 -TTATTTTATTTAT
449290 TTATTTTAATTTA-
1 TTATTTT-ATTTAT
*
449303 TTAATTTATTT-T
1 TTATTTTATTTAT
449315 TT-TGTTTATTT
1 TTAT-TTTATTT
449326 TCTTTTTTGC
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
12 13 0.32
13 13 0.32
14 15 0.37
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.73
Consensus pattern (13 bp):
TTATTTTATTTAT
Found at i:462172 original size:19 final size:18
Alignment explanation
Indices: 462150--462195 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
462140 TTTACACCAC
462150 AAAAACAAATCTAACA-TAA
1 AAAAACAAATC-AA-ATTAA
*
462169 AAAAAGAAATCAAATTAA
1 AAAAACAAATCAAATTAA
462187 AAAAACAAA
1 AAAAACAAA
462196 ATAAAGGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 1 0.04
18 13 0.54
19 10 0.42
ACGTcount: A:0.74, C:0.11, G:0.02, T:0.13
Consensus pattern (18 bp):
AAAAACAAATCAAATTAA
Found at i:464676 original size:53 final size:53
Alignment explanation
Indices: 464610--464723 Score: 149
Period size: 53 Copynumber: 2.2 Consensus size: 53
464600 CAAAAAAACT
* * *
464610 ATCTCAAGAGAGATACATTTGGTGTTTCAAG-GAAATCAATTTCAAGGGAAATA
1 ATCTCAAGAGAGATAAATTAGGTGTTTCAAGAGAAA-CAATCTCAAGGGAAATA
* * * *
464663 ATCTTAAGGGAGATAAATTAGGTGTTTCAAGAGAAACAATCTCAAGGGAGATT
1 ATCTCAAGAGAGATAAATTAGGTGTTTCAAGAGAAACAATCTCAAGGGAAATA
464716 ATCTCAAG
1 ATCTCAAG
464724 GAAGGCAAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 48 0.92
54 4 0.08
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.27
Consensus pattern (53 bp):
ATCTCAAGAGAGATAAATTAGGTGTTTCAAGAGAAACAATCTCAAGGGAAATA
Found at i:464746 original size:52 final size:53
Alignment explanation
Indices: 464630--464752 Score: 142
Period size: 53 Copynumber: 2.3 Consensus size: 53
464620 AGATACATTT
* * * * *
464630 GGTGTTTCAAG-GAAATCAATTTCAAGGGAAATAATCTTAAGGGAGATAAATTA
1 GGTGTTTCAAGAGAAA-CAATCTCAAGGGAAATAATCTCAAGGAAGACAAACTA
* * *
464683 GGTGTTTCAAGAGAAACAATCTCAAGGGAGATTATCTCAAGGAAGGCAAACTA
1 GGTGTTTCAAGAGAAACAATCTCAAGGGAAATAATCTCAAGGAAGACAAACTA
*
464736 -GTGTTTCAAGAAAAACA
1 GGTGTTTCAAGAGAAACA
464753 GTTGTTTCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
52 16 0.27
53 40 0.67
54 4 0.07
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.24
Consensus pattern (53 bp):
GGTGTTTCAAGAGAAACAATCTCAAGGGAAATAATCTCAAGGAAGACAAACTA
Found at i:464812 original size:13 final size:13
Alignment explanation
Indices: 464793--464841 Score: 62
Period size: 13 Copynumber: 3.6 Consensus size: 13
464783 ACAAAATAGT
464793 ATTTCAAGAAACA
1 ATTTCAAGAAACA
*
464806 GTTTCAAGAAACA
1 ATTTCAAGAAACA
464819 ATTTCAAGGGAAACA
1 ATTTCAA--GAAACA
*
464834 ATCTCAAG
1 ATTTCAAG
464842 TGTATTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 19 0.61
15 12 0.39
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.22
Consensus pattern (13 bp):
ATTTCAAGAAACA
Found at i:464876 original size:50 final size:51
Alignment explanation
Indices: 464806--464951 Score: 158
Period size: 50 Copynumber: 2.9 Consensus size: 51
464796 TCAAGAAACA
* * ***
464806 GTTTCAAGAAACAATTTCAAGGGAAACAATCTCAAGTGTA-TTATTTTGGT
1 GTTTCAAGAAACAATTTCAAGGGAAACAATCTCAAGTGGAGATAAACTGGT
* *
464856 GTTTCAAG-AACAAATCTCAAGGGAAACTATCTCAAG-GGAGATAAACTGGT
1 GTTTCAAGAAAC-AATTTCAAGGGAAACAATCTCAAGTGGAGATAAACTGGT
*
464906 GTTTCAAGAGAAATAATTTCAA-GGAAACAATCTCAAGT-GAGATAAA
1 GTTTC-A-AGAAACAATTTCAAGGGAAACAATCTCAAGTGGAGATAAA
464952 TTTTGTTTTG
Statistics
Matches: 80, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
49 5 0.06
50 41 0.51
51 23 0.29
52 9 0.11
53 2 0.03
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (51 bp):
GTTTCAAGAAACAATTTCAAGGGAAACAATCTCAAGTGGAGATAAACTGGT
Found at i:464983 original size:36 final size:36
Alignment explanation
Indices: 464936--465056 Score: 129
Period size: 36 Copynumber: 3.3 Consensus size: 36
464926 AAGGAAACAA
464936 TCTCAAGTGAGATAAATTTTGTTTTGAGAAAAATTG
1 TCTCAAGTGAGATAAATTTTGTTTTGAGAAAAATTG
* * * * * *
464972 TCTCAAGTGAGACGAAA-TTTGCTTTAAG-GAAACTA
1 TCTCAAGTGAGA-TAAATTTTGTTTTGAGAAAAATTG
*
465007 TCTCAATTGAGATAAATTTGTTGTTTTGAGAAAAATTG
1 TCTCAAGTGAGATAAA-TT-TTGTTTTGAGAAAAATTG
*
465045 TATCAAGTGAGA
1 TCTCAAGTGAGA
465057 CGAAATTTGG
Statistics
Matches: 65, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
34 3 0.05
35 15 0.23
36 22 0.34
37 11 0.17
38 14 0.22
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (36 bp):
TCTCAAGTGAGATAAATTTTGTTTTGAGAAAAATTG
Found at i:465054 original size:73 final size:72
Alignment explanation
Indices: 464922--465094 Score: 258
Period size: 73 Copynumber: 2.4 Consensus size: 72
464912 AGAGAAATAA
*
464922 TTTCAAGGAAACAATCTCAAGTGAGATAAATTTTGTTTTGAGAAAAATTGTCTCAAGTGAGACGA
1 TTTCAAGGAAACAATCTCAAGTGAGATAAATTTTGTTTTGAGAAAAATTGTATCAAGTGAGACGA
464987 AATTTGC
66 AATTTGC
* *
464994 TTT-AAGGAAACTATCTCAATTGAGATAAATTTGTTGTTTTGAGAAAAATTGTATCAAGTGAGAC
1 TTTCAAGGAAACAATCTCAAGTGAGATAAA-TT-TTGTTTTGAGAAAAATTGTATCAAGTGAGAC
*
465058 GAAATTTGG
64 GAAATTTGC
* *
465067 TTTCAAGATAAACCATCTCAAGTGAGAT
1 TTTCAAG-GAAACAATCTCAAGTGAGAT
465095 TTTATTTTTA
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
71 24 0.27
72 5 0.06
73 41 0.46
74 3 0.03
75 17 0.19
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (72 bp):
TTTCAAGGAAACAATCTCAAGTGAGATAAATTTTGTTTTGAGAAAAATTGTATCAAGTGAGACGA
AATTTGC
Found at i:465090 original size:37 final size:36
Alignment explanation
Indices: 464930--465093 Score: 118
Period size: 36 Copynumber: 4.5 Consensus size: 36
464920 AATTTCAAGG
* * * *
464930 AAACAATCTCAAGTGAGA-TAAATTTTGTTTTGAGAA
1 AAACTATCTCAAGTGAGACGAAA-TTTGGTTTAAGAA
* * * *
464966 AAATTGTCTCAAGTGAGACGAAATTTGCTTTAAG-G
1 AAACTATCTCAAGTGAGACGAAATTTGGTTTAAGAA
* * *
465001 AAACTATCTCAATTGAGA-TAAATTTGTTGTTTTGAGAA
1 AAACTATCTCAAGTGAGACGAAATTTG--G-TTTAAGAA
* * * *
465039 AAATTGTATCAAGTGAGACGAAATTTGGTTTCAAGAT
1 AAACTATCTCAAGTGAGACGAAATTTGGTTT-AAGAA
*
465076 AAACCATCTCAAGTGAGA
1 AAACTATCTCAAGTGAGA
465094 TTTTATTTTT
Statistics
Matches: 96, Mismatches: 25, Indels: 13
0.72 0.19 0.10
Matches are distributed among these distances:
34 7 0.07
35 15 0.16
36 27 0.28
37 26 0.27
38 14 0.15
39 7 0.07
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.32
Consensus pattern (36 bp):
AAACTATCTCAAGTGAGACGAAATTTGGTTTAAGAA
Found at i:465249 original size:20 final size:22
Alignment explanation
Indices: 465221--465260 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
465211 GAGAACGATC
*
465221 TTAAGGAAA-ACAAGATTTTCT
1 TTAAGGAAAGACAACATTTTCT
465242 TTAA-GAAAGACAACATTTT
1 TTAAGGAAAGACAACATTTT
465261 TTGGAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (22 bp):
TTAAGGAAAGACAACATTTTCT
Found at i:466871 original size:12 final size:13
Alignment explanation
Indices: 466853--466882 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
466843 TCATGCAAAA
466853 GCATATAACCATT
1 GCATATAACCATT
466866 -CATATAACCATT
1 GCATATAACCATT
466878 GCATA
1 GCATA
466883 CATACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (13 bp):
GCATATAACCATT
Found at i:471580 original size:52 final size:52
Alignment explanation
Indices: 471525--471625 Score: 125
Period size: 52 Copynumber: 1.9 Consensus size: 52
471515 AACTATCACT
* * *
471525 AAAATTAATGACATAGAT-AAATAAATGTAATATACAAA-AATTAAAATTATATA
1 AAAATAAAT-ACAAAGATGAAAT-AATATAA-ATACAAACAATTAAAATTATATA
*
471578 AAAATAAATACAAAGATGAAATGATATAAATACAAACAATTAAAATTA
1 AAAATAAATACAAAGATGAAATAATATAAATACAAACAATTAAAATTA
471626 AAGGAAGATA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
51 7 0.17
52 23 0.55
53 12 0.29
ACGTcount: A:0.62, C:0.05, G:0.06, T:0.27
Consensus pattern (52 bp):
AAAATAAATACAAAGATGAAATAATATAAATACAAACAATTAAAATTATATA
Found at i:472224 original size:12 final size:12
Alignment explanation
Indices: 472203--472228 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
472193 CCTCTCTCTC
472203 TTTCTCTCTTTT
1 TTTCTCTCTTTT
472215 TTTCTCTCTTTT
1 TTTCTCTCTTTT
472227 TT
1 TT
472229 CTTTAATGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTCTCTCTTTT
Found at i:475394 original size:15 final size:15
Alignment explanation
Indices: 475358--475404 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
475348 TGATAATTTA
*
475358 ATTTATATAATTATT
1 ATTTATATAAATATT
*
475373 ATATATATACAATA-T
1 ATTTATATA-AATATT
475388 ATTTATATTAAATATT
1 ATTTATA-TAAATATT
475404 A
1 A
475405 GTATTTACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTTATATAAATATT
Found at i:482162 original size:20 final size:20
Alignment explanation
Indices: 482137--482191 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
482127 TTCTCATGAG
*
482137 TTTGTAAAGCCTTTGGGTCA
1 TTTGTAAAGCCTTCGGGTCA
482157 TTTGTAAAGCCTTCGGGTCA
1 TTTGTAAAGCCTTCGGGTCA
*
482177 TTTGTAAAACCTTCG
1 TTTGTAAAGCCTTCG
482192 CTCTCCACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (20 bp):
TTTGTAAAGCCTTCGGGTCA
Found at i:482509 original size:186 final size:186
Alignment explanation
Indices: 482192--482686 Score: 819
Period size: 186 Copynumber: 2.7 Consensus size: 186
482182 AAAACCTTCG
*
482192 CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAACAAAGTATGAAATCTTCACGGAAGAGTAGT
1 CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAGTAGT
*
482257 GAAGTAATCCAACTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTATAAAATCA
66 GAAGTAATCCAATTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTATAAAATCA
*
482322 TCCTTAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTCA
131 TCCTCAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTCA
* *
482378 CTTTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAATAGT
1 CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAGTAGT
* * * *
482443 GAAGTAATCTAATTGCGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTTTTATCAAATCA
66 GAAGTAATCCAATTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTATAAAATCA
**
482508 TCCTCAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTTG
131 TCCTCAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTCA
* * * * *
482564 CTCTCCACGGAAGAGTAGTGGAATGAAATTTTCAGCAAAATATTAAATCTTCACGGAAGAGTAGT
1 CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAGTAGT
* * *
482629 GAAGTAATCCAATTGTGAGGCTGATCTCCATGGAAGAGTAGTGAAATTAGATTCTTAT
66 GAAGTAATCCAATTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTAT
482687 TAAGTCAATC
Statistics
Matches: 285, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
186 285 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (186 bp):
CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAGTAGT
GAAGTAATCCAATTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTATAAAATCA
TCCTCAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTCA
Found at i:483108 original size:25 final size:25
Alignment explanation
Indices: 483040--483100 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
483030 AGGCACACAT
483040 GCCCAAGTTACAAGCTCGGTTGTAG
1 GCCCAAGTTACAAGCTCGGTTGTAG
483065 GCCCAAGTTACAAGCTCGGTTGTAG
1 GCCCAAGTTACAAGCTCGGTTGTAG
483090 GCCC-AGTTACA
1 GCCCAAGTTACA
483101 CAACTCGGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 7 0.19
25 29 0.81
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (25 bp):
GCCCAAGTTACAAGCTCGGTTGTAG
Found at i:483114 original size:24 final size:23
Alignment explanation
Indices: 483040--483108 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 23
483030 AGGCACACAT
*
483040 GCCCAAGTTACAAGCTCGGTTGTAG
1 GCCC-AGTTACAAACTCGG-TGTAG
*
483065 GCCCAAGTTACAAGCTCGGTTGTAG
1 GCCC-AGTTACAAACTCGG-TGTAG
483090 GCCCAGTTACACAACTCGG
1 GCCCAGTTACA-AACTCGG
483109 GCTAGGTCCA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
24 7 0.17
25 35 0.83
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (23 bp):
GCCCAGTTACAAACTCGGTGTAG
Found at i:486379 original size:75 final size:75
Alignment explanation
Indices: 486261--486457 Score: 317
Period size: 76 Copynumber: 2.6 Consensus size: 75
486251 ATTTTAAATA
* *
486261 TTATATTTTATCTTTGTTTTAGTATTTTAGTTTAAATGGGTTTTAGTA-TTTAATTAAGTTTTAA
1 TTATATTTTATCTTTGTTTTAGTATTTTAGTTTAAATAGGTTTTAATATTTTAATTAAGTTTTAA
486325 GATATTATTT
66 GATATTATTT
486335 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAATATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTA-GTATTTTAGTTTAAATAGGTTTTAATATTTTAATTAAGTTTTA
*
486400 GGATATTATTT
65 AGATATTATTT
* *
486411 TTATATTTTATCTTTGTTTTATGTATTTTAGTTTTAAT-TGTTTTAAT
1 TTATATTTTATCTTTGTTTTA-GTATTTTAGTTTAAATAGGTTTTAAT
486458 TAGGATTTAA
Statistics
Matches: 115, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
74 21 0.18
75 33 0.29
76 61 0.53
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.61
Consensus pattern (75 bp):
TTATATTTTATCTTTGTTTTAGTATTTTAGTTTAAATAGGTTTTAATATTTTAATTAAGTTTTAA
GATATTATTT
Found at i:487127 original size:29 final size:28
Alignment explanation
Indices: 487071--487127 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
487061 ACCAATTCAG
* * **
487071 TTATTTTATTTATTTGTTTATTTAATTT
1 TTATTTTATTTACTTCTTTAAATAATTT
487099 TTATTTTATTATACTTCTTTAAATAATTT
1 TTATTTTATT-TACTTCTTTAAATAATTT
487128 AAAACCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (28 bp):
TTATTTTATTTACTTCTTTAAATAATTT
Found at i:487672 original size:64 final size:63
Alignment explanation
Indices: 487611--487731 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 63
487601 GTAAAATCGG
*
487611 GTACAGGTCA-ACTCAGGTTGATTTGACACTAAATCCAGATCGGGTTCAGGTCAGGTCAAATCA
1 GTACAGGTCATACTCAGGTTGATTTGACACCAAATCCAGATC-GGTTCAGGTCAGGTCAAATCA
* * * ** *
487674 GTTCGGGTTATTTTCAGGTTGATTTGACACCAGATCCAGATCGGTTCAGGTCAGGTCA
1 GTACAGGTCATACTCAGGTTGATTTGACACCAAATCCAGATCGGTTCAGGTCAGGTCA
487732 TTTTCAGTTC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
63 23 0.46
64 27 0.54
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (63 bp):
GTACAGGTCATACTCAGGTTGATTTGACACCAAATCCAGATCGGTTCAGGTCAGGTCAAATCA
Found at i:488431 original size:17 final size:16
Alignment explanation
Indices: 488400--488496 Score: 55
Period size: 16 Copynumber: 6.1 Consensus size: 16
488390 AATTGAAAAA
488400 AATATAATATATATAT
1 AATATAATATATATAT
*
488416 AATATAAGTTTATATAT
1 AATATAA-TATATATAT
488433 AA-ACT-ATATATATA-
1 AATA-TAATATATATAT
*
488447 AACTAT-ATTTATATTAT
1 AA-TATAATATATA-TAT
*
488464 AA-ATTATATA-AT-T
1 AATATAATATATATAT
*
488477 ATTATAAGTTATATATAT
1 AATATAA--TATATATAT
488495 AA
1 AA
488497 ATTATGTTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 22
0.68 0.08 0.24
Matches are distributed among these distances:
13 2 0.03
14 6 0.10
15 17 0.27
16 20 0.32
17 15 0.24
18 2 0.03
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (16 bp):
AATATAATATATATAT
Found at i:488442 original size:13 final size:13
Alignment explanation
Indices: 488426--488546 Score: 72
Period size: 13 Copynumber: 9.4 Consensus size: 13
488416 AATATAAGTT
488426 TATATATAAACTA
1 TATATATAAACTA
488439 TATATATAAACTA
1 TATATATAAACTA
* *
488452 TAT-T-TATATTA
1 TATATATAAACTA
*
488463 TAAATTATATAA-T-
1 TATA-TATA-AACTA
**
488476 TAT-TATAAGTTA
1 TATATATAAACTA
*
488488 TATATATAAATTA
1 TATATATAAACTA
* *
488501 TGTTTATATGAACTA
1 --TATATATAAACTA
*
488516 TATATATAAATTA
1 TATATATAAACTA
*
488529 TATATGTAAACTA
1 TATATATAAACTA
*
488542 GATAT
1 TATAT
488547 GTATATACTA
Statistics
Matches: 83, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
10 1 0.01
11 12 0.14
12 4 0.05
13 52 0.63
14 3 0.04
15 11 0.13
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.45
Consensus pattern (13 bp):
TATATATAAACTA
Found at i:488466 original size:18 final size:19
Alignment explanation
Indices: 488437--488472 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
488427 ATATATAAAC
488437 TATATATATAAACTATATT
1 TATATATATAAACTATATT
*
488456 TATAT-TATAAATTATAT
1 TATATATATAAACTATAT
488473 AATTATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TATATATATAAACTATATT
Found at i:488623 original size:17 final size:17
Alignment explanation
Indices: 488580--488621 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
488570 GTTTATAAAC
488580 TATAAT-TTT-TATTAA
1 TATAATATTTATATTAA
*
488595 TATAATATTTATATTTA
1 TATAATATTTATATTAA
488612 TATATATATT
1 TATA-ATATT
488622 ATTCAAAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 6 0.26
16 3 0.13
17 9 0.39
18 5 0.22
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TATAATATTTATATTAA
Found at i:488755 original size:19 final size:20
Alignment explanation
Indices: 488733--488770 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
488723 GAATATAGGG
488733 AAATTGAG-AATTTAAAGGA
1 AAATTGAGAAATTTAAAGGA
*
488752 AAATTGGGAAATTTAAAGG
1 AAATTGAGAAATTTAAAGG
488771 GAACATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (20 bp):
AAATTGAGAAATTTAAAGGA
Found at i:488760 original size:27 final size:27
Alignment explanation
Indices: 488702--488764 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
488692 GGGAATTTAG
** *
488702 AGGGAAATTGAGAAATTTTGAGAATAT
1 AGGGAAATTGAGAAATTTAAAGAAAAT
488729 AGGGAAATTGAG-AATTTAAAGGAAAAT
1 AGGGAAATTGAGAAATTTAAA-GAAAAT
*
488756 TGGGAAATT
1 AGGGAAATT
488765 TAAAGGGAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.46, C:0.00, G:0.27, T:0.27
Consensus pattern (27 bp):
AGGGAAATTGAGAAATTTAAAGAAAAT
Found at i:488991 original size:2 final size:2
Alignment explanation
Indices: 488984--489047 Score: 121
Period size: 2 Copynumber: 32.5 Consensus size: 2
488974 ATAAGTAATT
488984 TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
489025 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
489048 TGTAGAAACG
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 60 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:489157 original size:7 final size:7
Alignment explanation
Indices: 489147--489172 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
489137 ACTTAAATCT
489147 TAAACAC
1 TAAACAC
489154 TAAACAC
1 TAAACAC
489161 TAAACAC
1 TAAACAC
489168 TAAAC
1 TAAAC
489173 TACATAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.27, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACAC
Found at i:489164 original size:21 final size:20
Alignment explanation
Indices: 489118--489164 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
489108 ATTCTGAACC
489118 CTAAATCATAAACACAAAAA
1 CTAAATCATAAACACAAAAA
* *
489138 CTTAAATCTTAAACACTAAACA
1 C-TAAATCATAAACAC-AAAAA
489160 CTAAA
1 CTAAA
489165 CACTAAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.57, C:0.21, G:0.00, T:0.21
Consensus pattern (20 bp):
CTAAATCATAAACACAAAAA
Found at i:489214 original size:7 final size:7
Alignment explanation
Indices: 489204--489268 Score: 58
Period size: 7 Copynumber: 9.3 Consensus size: 7
489194 TAGTATACAA
489204 AAACCCT
1 AAACCCT
*
489211 AAACCTT
1 AAACCCT
* *
489218 AAATCAT
1 AAACCCT
*
489225 AAACACT
1 AAACCCT
**
489232 AAACTTT
1 AAACCCT
*
489239 AAACCAT
1 AAACCCT
*
489246 AAACACT
1 AAACCCT
489253 AAACCCT
1 AAACCCT
489260 AAACCCT
1 AAACCCT
489267 AA
1 AA
489269 TGTAAATGAA
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 45 1.00
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (7 bp):
AAACCCT
Found at i:489233 original size:21 final size:21
Alignment explanation
Indices: 489204--489264 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
489194 TAGTATACAA
* *
489204 AAACCCTAAACCTTAAATCAT
1 AAACACTAAACCTTAAACCAT
*
489225 AAACACTAAACTTTAAACCAT
1 AAACACTAAACCTTAAACCAT
*
489246 AAACACTAAACCCTAAACC
1 AAACACTAAACCTTAAACC
489265 CTAATGTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.20
Consensus pattern (21 bp):
AAACACTAAACCTTAAACCAT
Found at i:489649 original size:20 final size:20
Alignment explanation
Indices: 489617--489664 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
489607 ATTTTATATA
*
489617 ATAT-GTATGTATAAACCAT
1 ATATAGTATATATAAACCAT
*
489636 ATATAGTATATATAAACTAT
1 ATATAGTATATATAAACCAT
489656 ATATA-TATA
1 ATATAGTATA
489665 ACCTATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (20 bp):
ATATAGTATATATAAACCAT
Found at i:489662 original size:15 final size:15
Alignment explanation
Indices: 489637--489688 Score: 77
Period size: 15 Copynumber: 3.4 Consensus size: 15
489627 ATAAACCATA
489637 TATAGTATATATAAAC
1 TATA-TATATATAAAC
*
489653 TATATATATATAACC
1 TATATATATATAAAC
*
489668 TATATATATAAAAAC
1 TATATATATATAAAC
489683 TATATA
1 TATATA
489689 AAGTATATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
15 29 0.88
16 4 0.12
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (15 bp):
TATATATATATAAAC
Found at i:489756 original size:7 final size:7
Alignment explanation
Indices: 489746--489789 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
489736 TAGTTTATAG
489746 AAACCCT
1 AAACCCT
*
489753 AAACCAT
1 AAACCCT
*
489760 AAACACT
1 AAACCCT
*
489767 AAACACT
1 AAACCCT
*
489774 AAACCAT
1 AAACCCT
489781 AAACCCT
1 AAACCCT
489788 AA
1 AA
489790 TGTAAATAGA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.55, C:0.32, G:0.00, T:0.14
Consensus pattern (7 bp):
AAACCCT
Found at i:489775 original size:21 final size:21
Alignment explanation
Indices: 489746--489789 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
489736 TAGTTTATAG
*
489746 AAACCCTAAACCATAAACACT
1 AAACACTAAACCATAAACACT
*
489767 AAACACTAAACCATAAACCCT
1 AAACACTAAACCATAAACACT
489788 AA
1 AA
489790 TGTAAATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.55, C:0.32, G:0.00, T:0.14
Consensus pattern (21 bp):
AAACACTAAACCATAAACACT
Found at i:490270 original size:7 final size:7
Alignment explanation
Indices: 490260--490338 Score: 72
Period size: 7 Copynumber: 11.3 Consensus size: 7
490250 TAGTTTATAG
*
490260 AAACCTT
1 AAACCAT
490267 AAACCAT
1 AAACCAT
*
490274 AAATCAT
1 AAACCAT
490281 AAACCAT
1 AAACCAT
*
490288 AAACCCT
1 AAACCAT
**
490295 AAACTTT
1 AAACCAT
490302 AAACCAT
1 AAACCAT
*
490309 AAA-TATT
1 AAACCA-T
490316 AAA-CACT
1 AAACCA-T
490323 AAACCAT
1 AAACCAT
490330 AAACCAT
1 AAACCAT
490337 AA
1 AA
490339 CGTAAATGGA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
6 1 0.02
7 56 0.95
8 2 0.03
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (7 bp):
AAACCAT
Found at i:490526 original size:23 final size:24
Alignment explanation
Indices: 490500--490549 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
490490 TTATTTTTTC
490500 TTTATAAAAATTAAACTATA-TAA
1 TTTATAAAAATTAAACTATATTAA
*
490523 TTTATATAAATTAAACTATATTAA
1 TTTATAAAAATTAAACTATATTAA
490547 TTT
1 TTT
490550 TCCTTTGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (24 bp):
TTTATAAAAATTAAACTATATTAA
Found at i:490875 original size:17 final size:16
Alignment explanation
Indices: 490820--490877 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
490810 TACAGATCAG
*
490820 GTTAAAAACAGGTCAA
1 GTTAAAAACAAGTCAA
** *
490836 GAAAAAAACATGTCAA
1 GTTAAAAACAAGTCAA
*
490852 GTTAAAAACAAGTCAG
1 GTTAAAAACAAGTCAA
*
490868 GTTGAAAACA
1 GTTAAAAACA
490878 GGTCGGTAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.17
Consensus pattern (16 bp):
GTTAAAAACAAGTCAA
Found at i:492735 original size:14 final size:14
Alignment explanation
Indices: 492716--492742 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
492706 CGAAATGAGA
492716 AAAAATTTATTTAT
1 AAAAATTTATTTAT
492730 AAAAATTTATTTA
1 AAAAATTTATTTA
492743 ACAAAGTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAAAATTTATTTAT
Found at i:502469 original size:2 final size:2
Alignment explanation
Indices: 502462--502492 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
502452 ACTCTATGTT
502462 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
502493 TGAAATTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:503680 original size:15 final size:15
Alignment explanation
Indices: 503660--503690 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
503650 ATGGGTTTTG
503660 GGCGGCGGAGGAGGA
1 GGCGGCGGAGGAGGA
503675 GGCGGCGGAGGAGGA
1 GGCGGCGGAGGAGGA
503690 G
1 G
503691 TTGACGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.68, T:0.00
Consensus pattern (15 bp):
GGCGGCGGAGGAGGA
Found at i:508628 original size:21 final size:20
Alignment explanation
Indices: 508601--508699 Score: 72
Period size: 21 Copynumber: 4.8 Consensus size: 20
508591 AATCAGTTAC
508601 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
508622 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
508643 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* * *
508663 CCAGAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
508684 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
508700 ACACATAAAT
Statistics
Matches: 59, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
20 15 0.25
21 44 0.75
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:508692 original size:20 final size:20
Alignment explanation
Indices: 508667--508857 Score: 195
Period size: 20 Copynumber: 9.5 Consensus size: 20
508657 GATTTTCCAG
* * *
508667 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATACGTA
* * *
508687 AATCGCAACGCGAACACATA
1 AATCGCAACGCGTATACGTA
* *
508707 AATCGCAACGCATATCCGTA
1 AATCGCAACGCGTATACGTA
* *
508727 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATACGTA
*
508747 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATACGTA
* *
508767 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATACGTA
* *
508787 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATACGTA
* *
508807 AATCGCAACGAC-AATATGTAA
1 AATCGCAACG-CGTATACGT-A
*
508828 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATACGTA
508848 AATCGCAACG
1 AATCGCAACG
508858 TGATTTTTAA
Statistics
Matches: 146, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
20 130 0.89
21 16 0.11
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGTATACGTA
Found at i:508750 original size:60 final size:60
Alignment explanation
Indices: 508686--508859 Score: 235
Period size: 60 Copynumber: 2.9 Consensus size: 60
508676 GCGAATATGA
* *
508686 AAATCGCAACGCGAACACATAAATCGCAACGCATATCCGTAAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGAACACGTAAATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGT
* * * *
508746 AAATCGCAACGCGTATC-CGTAAATCGCAATGCGTATCCGTATATCGCAACGCGTATCCGT
1 AAATCGCAACGCG-AACACGTAAATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGT
* *
508806 AAATCGCAACGAC-AATATGTAAAATCGCAACGCGTATCCGTAAATCGCAACGTG
1 AAATCGCAACG-CGAACACGT-AAATCGCAACGCGTATCCGTAAATCGCAACGTG
508860 ATTTTTAAAG
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
59 1 0.01
60 64 0.65
61 33 0.34
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.20
Consensus pattern (60 bp):
AAATCGCAACGCGAACACGTAAATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGT
Found at i:509265 original size:14 final size:14
Alignment explanation
Indices: 509246--509302 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
509236 TTTCATTTCG
509246 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
509260 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
*
509279 CGTTGCTATTCTCT
1 CGTTGCGATTCTCT
509293 CGTTGCGATT
1 CGTTGCGATT
509303 TTCAAGTTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 19 0.56
16 3 0.09
17 3 0.09
19 9 0.26
ACGTcount: A:0.09, C:0.25, G:0.21, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:509273 original size:33 final size:33
Alignment explanation
Indices: 509236--509306 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
509226 TTCACTTAGA
509236 TTTCATTTCGCGTTGCGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTGCGATTCTCTCGTTGCGAT
*
509269 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTGCGATTCTCTCGTTGCGAT
509302 TTTCA
1 TTTCA
509307 AGTTAGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.10, C:0.24, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTGCGATTCTCTCGTTGCGAT
Found at i:509284 original size:19 final size:18
Alignment explanation
Indices: 509234--509284 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 18
509224 ATTTCACTTA
509234 GATTTCATTTCGCGTTGC
1 GATTTCATTTCGCGTTGC
*
509252 GA-TTC---TCTCGTTGC
1 GATTTCATTTCGCGTTGC
509266 GATTTTCATTTCGCGTTGC
1 GA-TTTCATTTCGCGTTGC
509285 TATTCTCTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
14 10 0.38
16 3 0.12
17 3 0.12
18 2 0.08
19 8 0.31
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.45
Consensus pattern (18 bp):
GATTTCATTTCGCGTTGC
Found at i:509412 original size:21 final size:21
Alignment explanation
Indices: 509386--509481 Score: 108
Period size: 21 Copynumber: 4.7 Consensus size: 21
509376 TGCAGAAGAG
509386 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
* **
509407 TCGCAACGTGA-AAATGACTA
1 TCGCAACGAGAGAAATGAAAA
*
509427 TCTGCAACGAGAAAAATGAAAA
1 TC-GCAACGAGAGAAATGAAAA
**
509449 TCGCAAC--GCTAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
509468 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
509482 TCGCAACGCG
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
19 17 0.28
20 9 0.15
21 26 0.43
22 9 0.15
ACGTcount: A:0.48, C:0.18, G:0.21, T:0.14
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGAAAA
Found at i:509556 original size:20 final size:21
Alignment explanation
Indices: 509531--509594 Score: 87
Period size: 20 Copynumber: 3.1 Consensus size: 21
509521 CGCGTTGCGA
509531 TTCTCTCGTTGCGA-TTTCAT
1 TTCTCTCGTTGCGACTTTCAT
**
509551 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGACTTTCAT
*
509571 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGACTTTCAT
509592 TTC
1 TTC
509595 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 31 0.84
21 6 0.16
ACGTcount: A:0.11, C:0.27, G:0.16, T:0.47
Consensus pattern (21 bp):
TTCTCTCGTTGCGACTTTCAT
Found at i:511532 original size:31 final size:33
Alignment explanation
Indices: 511478--511550 Score: 105
Period size: 31 Copynumber: 2.2 Consensus size: 33
511468 TAGTTTACTT
* *
511478 TCGCAACACGAAACTTAAAATCGCAACG-AGAA
1 TCGCAACGCGAAACTGAAAATCGCAACGAAGAA
511510 TCGCAACGCGAAA-TGAAAATCGCAACGACAGAA
1 TCGCAACGCGAAACTGAAAATCGCAACGA-AGAA
511543 TCGCAACG
1 TCGCAACG
511551 ACAAAATCGT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 13 0.35
32 12 0.32
33 12 0.32
ACGTcount: A:0.44, C:0.26, G:0.19, T:0.11
Consensus pattern (33 bp):
TCGCAACGCGAAACTGAAAATCGCAACGAAGAA
Found at i:511546 original size:14 final size:14
Alignment explanation
Indices: 511525--511564 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
511515 ACGCGAAATG
511525 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
511539 AGAATCGCAACGAC
1 AAAATCGCAACGAC
*
511553 AAAATCGTAACG
1 AAAATCGCAACG
511565 CGAAACCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.25, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Done.