Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007930.1 Hibiscus syriacus cultivar Beakdansim tig00110338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2280901
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 12
Found at i:672626 original size:35 final size:35
Alignment explanation
Indices: 672587--672691 Score: 192
Period size: 35 Copynumber: 3.0 Consensus size: 35
672577 AAAACAGTCC
*
672587 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
1 TCAATTACATTCTAAACCCCAAATTCCAAAATAAT
*
672622 TCAATTACATTCTAAACCCCAAATTTCAAAATAAT
1 TCAATTACATTCTAAACCCCAAATTCCAAAATAAT
672657 TCAATTACATTCTAAACCCCAAATTCCAAAATAAT
1 TCAATTACATTCTAAACCCCAAATTCCAAAATAAT
672692 AAAAAATAAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (35 bp):
TCAATTACATTCTAAACCCCAAATTCCAAAATAAT
Found at i:673251 original size:35 final size:35
Alignment explanation
Indices: 673205--673278 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
673195 CAATATTATT
* * *
673205 TTGAAGTATTTTAG-TATTTGGGGTTTAGAATGTAA
1 TTGAAGTATTTTGGAT-TTTGGAGTTTAGAATGAAA
*
673240 TTGAATTATTTTGGATTTTGGAGTTTAGAATGAAA
1 TTGAAGTATTTTGGATTTTGGAGTTTAGAATGAAA
673275 TTGA
1 TTGA
673279 TGACTATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 33 0.97
36 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (35 bp):
TTGAAGTATTTTGGATTTTGGAGTTTAGAATGAAA
Found at i:676624 original size:51 final size:51
Alignment explanation
Indices: 676547--676653 Score: 198
Period size: 51 Copynumber: 2.1 Consensus size: 51
676537 TATTTTAAAT
676547 AATTATTGGTTAAAATAAAATCCCTAATGTTTTTTATGGGATCATAAATTA
1 AATTATTGGTTAAAATAAAATCCCTAATGTTTTTTATGGGATCATAAATTA
676598 AATTATTGGTATAAAATAAAAT-CCTAATGTTTTTTATGGGATCATAAATTA
1 AATTATTGGT-TAAAATAAAATCCCTAATGTTTTTTATGGGATCATAAATTA
676649 AATTA
1 AATTA
676654 AACTCAGATT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
51 44 0.80
52 11 0.20
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (51 bp):
AATTATTGGTTAAAATAAAATCCCTAATGTTTTTTATGGGATCATAAATTA
Found at i:684453 original size:42 final size:42
Alignment explanation
Indices: 684394--684475 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
684384 CACAAATTTG
*
684394 TAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGCTTGATGTT
1 TAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGCATGATGTT
* *
684436 TAAATCCTTTGGGTCATCTGTCAGTTTTTCGAGCATGATG
1 TAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGCATGATG
684476 ATAAGTCCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40
Consensus pattern (42 bp):
TAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGCATGATGTT
Found at i:684742 original size:239 final size:244
Alignment explanation
Indices: 684292--685242 Score: 1179
Period size: 239 Copynumber: 3.9 Consensus size: 244
684282 CAAGTTGTTT
* * ****
684292 TGAAAA-GAGAAAACGATTTCCAAAGTTTCTCATTTAATATTTTCTAAAATGAAATTTTGAAAAG
1 TGAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAATTTTGAAAAG
684356 TAA-AAGTTTCTTACCTAGTAAA--ATTTCCCACAAATTTGTAAATCCTTCGGGTCATCTGTCAG
66 TAAGAAGTTTCTTACCTAGTAAATTATTTCCCACAAATTTGTAAATCCTTCGGGTCA--T-TCAG
* * * * * *
684418 TCTTTCGAGCTTGATGTTTAAATCCTTTGGGTCATCTGTCAGTTTTTCGAGCATGATGATAAGTC
128 TCTTTCGAGCATGATGCTTAAATCCTTAGGGT-ATATGTCAGTCTTTCGAGCAAGATGATAAGTC
* *
684483 CTTAGGACCAT-C--C--A-CTTTGGGTAAGATGTTTACATATGATTTTCACA
192 CTTAGGGCCATCCGTCAGACCTTTGGGTAGGATGTTTACATATGATTTTCACA
* *
684530 TGAAAATGAGAAAGCAATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAATTTTGAAAAG
1 TGAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAATTTTGAAAAG
* *
684595 TAAGAAGTTTCTT-CCTAATAAATTATTTCCCATAAATTTGTAAATCCTT-GGGTCA-TCAGTCT
66 TAAGAAGTTTCTTACCTAGTAAATTATTTCCCACAAATTTGTAAATCCTTCGGGTCATTCAGTCT
* *
684657 TTCGAGCATAATGTTTAAATCCTTAGGGT-TATGTCAGTCTTT-GAGCAAGATGATAAGTCCTTA
131 TTCGAGCATGATGCTTAAATCCTTAGGGTATATGTCAGTCTTTCGAGCAAGATGATAAGTCCTTA
684720 GGGCCATCCGTCAGACCTTTGGGTAGGATGTTTACATATGATTTTCACA
196 GGGCCATCCGTCAGACCTTTGGGTAGGATGTTTACATATGATTTTCACA
* *
684769 TGAAAATGAGAAAACGATTTTCAAAGTTTCTCATCTATTGTTCAAGAAAATGAAATTTTTGAAAA
1 TGAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAA-TTTTGAAAA
684834 GTAAGAAGTTTCTTAACC-AGTAAATTATTTCCCACAAATTTGTAAATCCTTCGGGTCATTTGTC
65 GTAAGAAGTTTCTT-ACCTAGTAAATTATTTCCCACAAATTTGTAAATCCTTCGGGTCA--T-TC
* * *
684898 AGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTTATCTGTCAGTCTTTTGAGCAAGATGATAAG
126 AGTCTTTCGAGCATGATGCTTAAATCCTTAGGG-TATATGTCAGTCTTTCGAGCAAGATGATAAG
* * * *
684963 TTCTTAGGGCCATCTGTCAGACCTTTGGGTAGGATGTATACACATGATTTTCACA
190 TCCTTAGGGCCATCCGTCAGACCTTTGGGTAGGATGTTTACATATGATTTTCACA
*
685018 TGAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAA---TCAAGAAAATGAAATTCTTGAAAA
1 TGAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAATT-TTGAAAA
* * * *
685080 GTAAGAAAAATTTCCAAGGTTTCTTACCCATTAAGTTATTT-CC-CAAATTTGTAAATCCTTTGG
65 GTAAG----------AA-GTTTCTTACCTAGTAAATTATTTCCCACAAATTTGTAAATCCTTCGG
* * *
685143 GTCATCTGTTAGTCTTTCGAGCATGATGCTTAAATCCATAGGGTCATCTGTCAGTCTTTCGAGCA
119 GTCA--T-TCAGTCTTTCGAGCATGATGCTTAAATCCTTAGGGT-ATATGTCAGTCTTTCGAGCA
*
685208 AGATGATAAGTCCTTAGGGCCATCCGTAAGACCTT
180 AGATGATAAGTCCTTAGGGCCATCCGTCAGACCTT
685243 CACGCAAGAT
Statistics
Matches: 632, Mismatches: 46, Indels: 53
0.86 0.06 0.07
Matches are distributed among these distances:
233 26 0.04
234 12 0.02
236 34 0.05
238 7 0.01
239 144 0.23
240 38 0.06
241 55 0.09
242 8 0.01
245 2 0.00
246 58 0.09
247 1 0.00
248 12 0.02
249 101 0.16
254 1 0.00
255 109 0.17
256 7 0.01
257 17 0.03
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35
Consensus pattern (244 bp):
TGAAAATGAGAAAACGATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAATTTTGAAAAG
TAAGAAGTTTCTTACCTAGTAAATTATTTCCCACAAATTTGTAAATCCTTCGGGTCATTCAGTCT
TTCGAGCATGATGCTTAAATCCTTAGGGTATATGTCAGTCTTTCGAGCAAGATGATAAGTCCTTA
GGGCCATCCGTCAGACCTTTGGGTAGGATGTTTACATATGATTTTCACA
Found at i:684940 original size:42 final size:42
Alignment explanation
Indices: 684876--684957 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
684866 CACAAATTTG
* *
684876 TAAATCCTTCGGGTCATTTGTCAGTCTTTCGAGCATGATGCT
1 TAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGCAAGATGCT
* * *
684918 TAAATCCTTTGGGTTATCTGTCAGTCTTTTGAGCAAGATG
1 TAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGCAAGATG
684958 ATAAGTTCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (42 bp):
TAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGCAAGATGCT
Found at i:685190 original size:42 final size:42
Alignment explanation
Indices: 685131--685212 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
685121 CCCAAATTTG
* * * *
685131 TAAATCCTTTGGGTCATCTGTTAGTCTTTCGAGCATGATGCT
1 TAAATCCATAGGGTCATCTGTCAGTCTTTCGAGCAAGATGCT
685173 TAAATCCATAGGGTCATCTGTCAGTCTTTCGAGCAAGATG
1 TAAATCCATAGGGTCATCTGTCAGTCTTTCGAGCAAGATG
685213 ATAAGTCCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (42 bp):
TAAATCCATAGGGTCATCTGTCAGTCTTTCGAGCAAGATGCT
Found at i:688467 original size:42 final size:43
Alignment explanation
Indices: 688408--688492 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 43
688398 CTCGAATCTC
* *
688408 GATTATAAATGTAAAAAGTGGGATT-TAAAAATTAGGGGCCTT
1 GATTATAAAGGTAAAAAGTGGGATTAAAAAAATTAGGGGCCTT
* *
688450 GATTATGAAGGTAAAAAGTGGTATTGAAAAAAATTAGGGGCCT
1 GATTATAAAGGTAAAAAGTGGGATT-AAAAAAATTAGGGGCCT
688493 CAAATCTTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 22 0.59
44 15 0.41
ACGTcount: A:0.41, C:0.05, G:0.26, T:0.28
Consensus pattern (43 bp):
GATTATAAAGGTAAAAAGTGGGATTAAAAAAATTAGGGGCCTT
Found at i:688517 original size:93 final size:93
Alignment explanation
Indices: 688369--688537 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
688359 ATTAGAAAGA
* * *
688369 TAAAAAGTGGAATTGAAAAAATTAGGGCCCTCGAATCTCGATTATAAATGT-AAAAAGTGGGATT
1 TAAAAAGTGGAATTGAAAAAATTAGGGCCCTCAAATCTCGATTATAAATGTAAAAAAATGAGATT
688433 TAAAAATTAGGGGCCTTGATTATGAAGG
66 TAAAAATTAGGGGCCTTGATTATGAAGG
* * *
688461 TAAAAAGTGGTATTGAAAAAAATTAGGGGCCTCAAATCTTGATTATAAATGTAAAAAAATGAGAT
1 TAAAAAGTGGAATTG-AAAAAATTAGGGCCCTCAAATCTCGATTATAAATGTAAAAAAATGAGAT
688526 TTAAAAATTAGG
65 TTAAAAATTAGG
688538 TGTATCAGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 14 0.20
93 33 0.48
94 22 0.32
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (93 bp):
TAAAAAGTGGAATTGAAAAAATTAGGGCCCTCAAATCTCGATTATAAATGTAAAAAAATGAGATT
TAAAAATTAGGGGCCTTGATTATGAAGG
Found at i:688560 original size:94 final size:92
Alignment explanation
Indices: 688317--688590 Score: 257
Period size: 92 Copynumber: 2.9 Consensus size: 92
688307 AAGTGCTTCA
* * * * * * * * **
688317 ATTATAAAGGTAGAAAGTGATATTGAAAAATTAAGGGTTTCAATTAGAAAGATAAAAAGTGGAAT
1 ATTATAAATGTAAAAAATGAGATTTAAAAATTAGGGGCTTC-ATTATAAAGGGAAAAAGTGGAAT
* *
688382 TG-AAAAAATTAGGGCCCTCGAATCTCG
65 TGAAAAAAATTAGGGACCTCAAATCTCG
* * * * * *
688409 ATTATAAATGTAAAAAGTGGGATTTAAAAATTAGGGGCCTTGATTATGAAGGTAAAAAGTGGTAT
1 ATTATAAATGTAAAAAATGAGATTTAAAAATTAGGGG-CTTCATTATAAAGGGAAAAAGTGGAAT
* *
688474 TGAAAAAAATTAGGGGCCTCAAATCTTG
65 TGAAAAAAATTAGGGACCTCAAATCTCG
* *
688502 ATTATAAATGTAAAAAAATGAGATTTAAAAATTAGGTG-TATCAGTTGTAAAGGGAAAAAGT-GA
1 ATTATAAATGT-AAAAAATGAGATTTAAAAATTAGGGGCT-TCA-TTATAAAGGGAAAAAGTGGA
*
688565 CATTGAAAAAAAATTAAGGACCTCAA
63 -ATTG-AAAAAAATTAGGGACCTCAA
688591 TTATAATGTA
Statistics
Matches: 150, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
92 53 0.35
93 38 0.25
94 41 0.27
95 18 0.12
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.27
Consensus pattern (92 bp):
ATTATAAATGTAAAAAATGAGATTTAAAAATTAGGGGCTTCATTATAAAGGGAAAAAGTGGAATT
GAAAAAAATTAGGGACCTCAAATCTCG
Found at i:688634 original size:41 final size:38
Alignment explanation
Indices: 688572--688701 Score: 125
Period size: 39 Copynumber: 3.2 Consensus size: 38
688562 TGACATTGAA
688572 AAAAAATTAAGGACCTCAATTATAATGTAAAAAATAAGATT
1 AAAAAATTAAGG-CCTCAATTATAA--TAAAAAATAAGATT
* * * *
688613 AAAAAATTAGAGGCTTTAATTATAAAAAAAAATAAAATT
1 AAAAAATTA-AGGCCTCAATTATAATAAAAAATAAGATT
* * *
688652 AAAAAGTTTAAGACCTCAATTATAAAAATAAAAAATATGATT
1 AAAAA-ATTAAGGCCTCAATTAT---AATAAAAAATAAGATT
688694 AAAAAATT
1 AAAAAATT
688702 TGGGGCCCTA
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
39 27 0.38
40 3 0.04
41 21 0.29
42 21 0.29
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (38 bp):
AAAAAATTAAGGCCTCAATTATAATAAAAAATAAGATT
Found at i:693858 original size:13 final size:14
Alignment explanation
Indices: 693823--693859 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
693813 AGATTTTTTA
693823 TGCAGGGATTTATT
1 TGCAGGGATTTATT
693837 TGCAGGGATTTA-T
1 TGCAGGGATTTATT
*
693850 TGTAGGGATT
1 TGCAGGGATT
693860 CCCATTAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.22, C:0.05, G:0.32, T:0.41
Consensus pattern (14 bp):
TGCAGGGATTTATT
Found at i:698591 original size:2 final size:2
Alignment explanation
Indices: 698584--698616 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
698574 ACAAAAACAA
698584 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
698617 ATACATAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:698804 original size:3 final size:3
Alignment explanation
Indices: 698773--698818 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
698763 GTACAAAATA
* * *
698773 AAT AAA AAT AAA AAT AA- AAT GAT -AT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
698819 GAAAATAGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
2 4 0.11
3 32 0.89
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:700886 original size:103 final size:102
Alignment explanation
Indices: 700752--700951 Score: 267
Period size: 103 Copynumber: 2.0 Consensus size: 102
700742 GAAACATTCT
* * * *
700752 CAAAAGAAACTGTCTCGAGTAAGACAAAATTTGTTT-AATGGAAAATAGATTCAAAGATTTTGTT
1 CAAAAGAAACTATCTCAAGGAAGACAAAATTTGTTTCAA-GGAAAACAGATTCAAAGATTTTGTT
* *
700816 TCAAGGAAAAACTGTCTTAAGAGAGAGAAAATTTAGTTC
65 TCAA-GAAAAACTGTCTCAAGAGAGACAAAATTTAGTTC
* ** * *
700855 CAAAAGAAACTATCTCAAGGGAGACGCAATTTGTTTCAAGGAAAACATATTCATAGATTTTGTTT
1 CAAAAGAAACTATCTCAAGGAAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTT
*
700920 CAAGAGAAACTGTCTCAAGAGAGACAAAATTT
66 CAAGAAAAACTGTCTCAAGAGAGACAAAATTT
700952 GTTTTACGAG
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
102 26 0.31
103 56 0.67
104 2 0.02
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (102 bp):
CAAAAGAAACTATCTCAAGGAAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTT
CAAGAAAAACTGTCTCAAGAGAGACAAAATTTAGTTC
Found at i:700963 original size:36 final size:36
Alignment explanation
Indices: 700913--701269 Score: 259
Period size: 36 Copynumber: 10.2 Consensus size: 36
700903 ATTCATAGAT
*
700913 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
* *
700949 TTTGTTTTACGAGAAAATGTCTCAAGAGAGACAAAA
1 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
* *
700985 TTTAGTTTTAAAAGAAACTGTCTCAAGAGAGACGAAA
1 TTT-GTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
* * *
701022 TTTGTTTAAAG-GAAAACATAT-TC-A-A-AG----AT
1 TTTGTTTTAAGAG-AAAC-TGTCTCAAGAGAGACAAAA
* * *
701051 TTTATTTCAAG-GAAAACTGTCTCAAGAGAGACGAAA
1 TTTGTTTTAAGAG-AAACTGTCTCAAGAGAGACAAAA
* * *
701087 TTTGTTTTACGAGAAAATGTCTCAAGAGAGAAAAAA
1 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
* * *
701123 TTTAATTATAA-AAAAACTGTCTCAAGAGAGACAAAA
1 TTT-GTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
* ** **
701159 CTTTGTTTCAAG-GAAAACAAAT-TC-A-A-AG----TT
1 -TTTGTTTTAAGAG-AAAC-TGTCTCAAGAGAGACAAAA
* * *
701189 TTTGTTTCAAGGGAAACCGTCTCAAGAGAGACAAAA
1 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
701225 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
*
701261 CTTTATTTT
1 -TTTGTTTT
701270 GAGTAAATTA
Statistics
Matches: 251, Mismatches: 43, Indels: 53
0.72 0.12 0.15
Matches are distributed among these distances:
28 3 0.01
29 35 0.14
30 3 0.01
31 2 0.01
32 4 0.02
33 2 0.01
34 3 0.01
35 3 0.01
36 140 0.56
37 55 0.22
38 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (36 bp):
TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
Found at i:701076 original size:138 final size:138
Alignment explanation
Indices: 700823--701269 Score: 648
Period size: 138 Copynumber: 3.2 Consensus size: 138
700813 GTTTCAAGGA
* * ** * * *
700823 AAAACTGTCTTAAGAGAGAGAAAATTTAGTTCCAAAAGAAACTATCTCAAGGGAGACGCAATTTG
1 AAAA-TGTCTCAAGAGAGACAAAATTTAGTTTTAAAAGAAACTGTCTCAAGAGAGACGAAATTTG
*
700888 TTTCAAGGAAAACATATTCATAGATTTTGTTTCAA-GAGAAACTGTCTCAAGAGAGACAAAATTT
65 TTTCAAGGAAAACATATTCAAAGATTTTGTTTCAAGGA-AAACTGTCTCAAGAGAGACAAAATTT
700952 GTTTTACGAG
129 GTTTTACGAG
700962 AAAATGTCTCAAGAGAGACAAAATTTAGTTTTAAAAGAAACTGTCTCAAGAGAGACGAAATTTGT
1 AAAATGTCTCAAGAGAGACAAAATTTAGTTTTAAAAGAAACTGTCTCAAGAGAGACGAAATTTGT
* * *
701027 TTAAAGGAAAACATATTCAAAGATTTTATTTCAAGGAAAACTGTCTCAAGAGAGACGAAATTTGT
66 TTCAAGGAAAACATATTCAAAGATTTTGTTTCAAGGAAAACTGTCTCAAGAGAGACAAAATTTGT
701092 TTTACGAG
131 TTTACGAG
* * * *
701100 AAAATGTCTCAAGAGAGAAAAAATTTAATTATAAAA-AAACTGTCTCAAGAGAGACAAAACTTTG
1 AAAATGTCTCAAGAGAGACAAAATTTAGTTTTAAAAGAAACTGTCTCAAGAGAGACGAAA-TTTG
* * * *
701164 TTTCAAGGAAAACAAATTCAAAGTTTTTGTTTCAAGGGAAACCGTCTCAAGAGAGACAAAATTTG
65 TTTCAAGGAAAACATATTCAAAGATTTTGTTTCAAGGAAAACTGTCTCAAGAGAGACAAAATTTG
*
701229 TTTTAAGAG
130 TTTTACGAG
*
701238 AAACTGTCTCAAGAGAGACAAAACTTTA-TTTT
1 AAAATGTCTCAAGAGAGACAAAA-TTTAGTTTT
701270 GAGTAAATTA
Statistics
Matches: 279, Mismatches: 26, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
137 22 0.08
138 247 0.89
139 10 0.04
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (138 bp):
AAAATGTCTCAAGAGAGACAAAATTTAGTTTTAAAAGAAACTGTCTCAAGAGAGACGAAATTTGT
TTCAAGGAAAACATATTCAAAGATTTTGTTTCAAGGAAAACTGTCTCAAGAGAGACAAAATTTGT
TTTACGAG
Found at i:702804 original size:95 final size:95
Alignment explanation
Indices: 702636--702816 Score: 285
Period size: 95 Copynumber: 1.9 Consensus size: 95
702626 ATATGTAAAT
* * * *
702636 ACCTTTATCAGGTTAGCTGAATCTTATCCATAAAGTCAGGGCGTTTAACCAATTGCCTTAGAGGG
1 ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCAGGGCATTTAACCAATTGCCTTAGAGGG
*
702701 ACATCTCAAGCTTTATTGTATAGTATAATC
66 ACAACTCAAGCTTTATTGTATAGTATAATC
702731 ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCC-GAGGCATTTAACCAATTG-CTCTAGAG
1 ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCAG-GGCATTTAACCAATTGCCT-TAGAG
702794 GGACAACTCAAGCTTTATTGTAT
64 GGACAACTCAAGCTTTATTGTAT
702817 TATAATATGG
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
94 3 0.04
95 76 0.96
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (95 bp):
ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCAGGGCATTTAACCAATTGCCTTAGAGGG
ACAACTCAAGCTTTATTGTATAGTATAATC
Found at i:706808 original size:2 final size:2
Alignment explanation
Indices: 706803--706865 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
706793 ATATAAAAAC
706803 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
706845 AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
706866 ATACAAAATA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:706935 original size:14 final size:13
Alignment explanation
Indices: 706915--706970 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
706905 AGAAAAAGAA
706915 AATAAATAAATAT
1 AATAAATAAATAT
706928 ATATAAAT-AATAGT
1 A-ATAAATAAATA-T
706942 AATAAA-AAA-AT
1 AATAAATAAATAT
*
706953 -ATAAATAATTAT
1 AATAAATAAATAT
706965 AATAAA
1 AATAAA
706971 GGCAAAAGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
10 5 0.14
11 3 0.08
12 3 0.08
13 17 0.47
14 8 0.22
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (13 bp):
AATAAATAAATAT
Found at i:706946 original size:23 final size:23
Alignment explanation
Indices: 706919--706970 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
706909 AAAGAAAATA
* *
706919 AATAAATATATATAAATAA-TAGT
1 AATAAAAAAATATAAATAATTA-T
706942 AATAAAAAAATATAAATAATTAT
1 AATAAAAAAATATAAATAATTAT
706965 AATAAA
1 AATAAA
706971 GGCAAAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 24 0.92
24 2 0.08
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
AATAAAAAAATATAAATAATTAT
Found at i:706993 original size:67 final size:69
Alignment explanation
Indices: 706890--707039 Score: 166
Period size: 66 Copynumber: 2.2 Consensus size: 69
706880 AGAAGATAAC
* * * * **
706890 AATAATAATACA-AAAAGAAAAAGAAAATAAATAAATA-TATATAAAT-AATAGTAATAAAAA-A
1 AATAATAATA-ATAAAGGCAAAAGAAAATAAAAAAATAGTACA-AAATAAATAAAAATAAAAATA
706951 ATAT-A
64 ATATGA
*
706956 AATAATTATAATAAAGGCAAAAGAATAATAAAAAAATAGTACAAAATAAATAAAAATAAAAATAA
1 AATAATAATAATAAAGGCAAAAGAA-AATAAAAAAATAGTACAAAATAAATAAAAATAAAAATAA
707021 TATGA
65 TATGA
*
707026 TATAATAATAATAA
1 AATAATAATAATAA
707040 TAATAATGAA
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
65 1 0.01
66 20 0.29
67 15 0.22
68 15 0.22
69 5 0.07
70 13 0.19
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.23
Consensus pattern (69 bp):
AATAATAATAATAAAGGCAAAAGAAAATAAAAAAATAGTACAAAATAAATAAAAATAAAAATAAT
ATGA
Found at i:712829 original size:3 final size:3
Alignment explanation
Indices: 712821--712873 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
712811 ACCTGAAAAC
*
712821 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
712869 ATA AT
1 ATA AT
712874 GGAATGACAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:713705 original size:253 final size:256
Alignment explanation
Indices: 713190--713759 Score: 833
Period size: 253 Copynumber: 2.2 Consensus size: 256
713180 ACTAACAGCT
* *
713190 AATTATGGAAATAGTTTACTAGGTAAGAAACTTTGGAAATTGTTTTCTTACTTTTCAAAAATTCC
1 AATTTTGGAAATAGTTTACTAGGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTC-AAAATTCC
* * * ** *
713255 CAATTTTCATATTTAAATGAGAAACTTTGGAAATTGTTTTCTCATTTTTTGAAAAGCATGTGAAA
65 CAATTTTCAAATTTAAATGAGAAACTTTGGAAATCGTTTTCCCATTTTTCAAAAAACATGTGAAA
713320 ACATCCTGCCCGAAGCTCTTATGGATGGCCCCAAAAGACTTATCATCTTGCTCGAAAGGCTTATA
130 ACATCCTGCCCGAAGCTCTTATGGATGGCCCCAAAAGACTTATCATCTTGCTCGAAAGGCTTATA
* * *
713385 GATGACCCGAAGGATTTAATCGTCATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACC
195 GATGACCCAAAGGATGTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACC
* **
713447 AATTTTGGAAATAGTTTACTAGGTAAGAAACTTTGGAAACCGTTTTCTTACTTTTCAAAATTTTC
1 AATTTTGGAAATAGTTTACTAGGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAATTCCC
*
713512 AA-TTT-AAATTTAAATGAGAAACTTTGGAAATCGTTTTCCCATTTTTCAAAAAATATGTGAAAA
66 AATTTTCAAATTTAAATGAGAAACTTTGGAAATCGTTTTCCCATTTTTCAAAAAACATGTGAAAA
* * * * *
713575 CATCTTGCCCGAAGGTCTTATGGATGG-CCCGAAGGTCTTATCATCTTGCTCGAAAGGCTTATAG
131 CATCCTGCCCGAAGCTCTTATGGATGGCCCCAAAAGACTTATCATCTTGCTCGAAAGGCTTATAG
* * *
713639 ATGACCCAAATGATGTAATCATCATGTTCGAAAGACTTACTGATGGTCC-AAATGACTTACC
196 ATGACCCAAAGGATGTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAA-GACTTACC
** * * * *
713700 AATTTTGGAAATAGTTTTTTAGGTAAGAAACTTTGAAAATCATTTTCTCACTTTTTAAAA
1 AATTTTGGAAATAGTTTACTAGGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAA
713760 AACATGTGAA
Statistics
Matches: 282, Mismatches: 30, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
252 3 0.01
253 138 0.49
254 76 0.27
255 3 0.01
256 9 0.03
257 53 0.19
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Consensus pattern (256 bp):
AATTTTGGAAATAGTTTACTAGGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAATTCCC
AATTTTCAAATTTAAATGAGAAACTTTGGAAATCGTTTTCCCATTTTTCAAAAAACATGTGAAAA
CATCCTGCCCGAAGCTCTTATGGATGGCCCCAAAAGACTTATCATCTTGCTCGAAAGGCTTATAG
ATGACCCAAAGGATGTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAAGACTTACC
Found at i:713869 original size:197 final size:197
Alignment explanation
Indices: 713528--713895 Score: 540
Period size: 197 Copynumber: 1.9 Consensus size: 197
713518 AATTTAAATG
* * * *
713528 AGAAACTTTGGAAATCGTTTTCCCATTTTTCAAAAAATATGTGAAAACATCTTGCCCGAAGGTCT
1 AGAAACTTTGAAAATCATTTTCCCATTTTTCAAAAAACATGTGAAAACATCATGCCCGAAGGTCT
* ** *
713593 TATGGATGGCCCGAAGGTCTTATCATCTTGCTCGAAAGGCTTATAGATGACCCAAATGATGTAAT
66 TATGGATGGCCCAAAGAACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCAAAGGATGTAAT
** * *
713658 CATCATGTTCGAAAGACTTACTGATGGTCCAAATGACTTACCAATTTTGGAAATAGTTTTTTAGG
131 CATCATACTCGAAAGACTTACTGATGGCCCAAAGGACTTACCAATTTTGGAAATAGTTTTTTAGG
713723 TA
196 TA
* *
713725 AGAAACTTTGAAAATCATTTTCTCACTTTTT-AAAAAACATGTGAAAACATCATGCTCGAAGGTC
1 AGAAACTTTGAAAATCATTTTCCCA-TTTTTCAAAAAACATGTGAAAACATCATGCCCGAAGGTC
* * * * *
713789 TTATGGATGGTCCAAATAACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCGAAGGGTTTAA
65 TTATGGATGGCCCAAAGAACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCAAAGGATGTAA
*
713854 TCATCATACTCGAAAGACTTATTGATGGCCCAAAGGACTTAC
130 TCATCATACTCGAAAGACTTACTGATGGCCCAAAGGACTTAC
713896 TAAGTAAGAA
Statistics
Matches: 150, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
197 145 0.97
198 5 0.03
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (197 bp):
AGAAACTTTGAAAATCATTTTCCCATTTTTCAAAAAACATGTGAAAACATCATGCCCGAAGGTCT
TATGGATGGCCCAAAGAACTTATCATCTTGCTCGAAAGGCTTATAGATGACCCAAAGGATGTAAT
CATCATACTCGAAAGACTTACTGATGGCCCAAAGGACTTACCAATTTTGGAAATAGTTTTTTAGG
TA
Found at i:714516 original size:29 final size:29
Alignment explanation
Indices: 714475--714607 Score: 169
Period size: 29 Copynumber: 4.6 Consensus size: 29
714465 GGCCAATTTT
714475 TTTTTATAAATTACAATAAATATCCA-AAC
1 TTTTTATAAATTACAATAAATA-CCATAAC
* * * **
714504 TTTCTAAAAATTAAAATAAATAGAATAAC
1 TTTTTATAAATTACAATAAATACCATAAC
*
714533 TTTTTATATATTACAATAAATACCATAAC
1 TTTTTATAAATTACAATAAATACCATAAC
* *
714562 TTTTTATAAATTACAATAAATTCCAAAAC
1 TTTTTATAAATTACAATAAATACCATAAC
*
714591 TATTTATAAATTACAAT
1 TTTTTATAAATTACAAT
714608 CAAAGAAAAA
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 1 0.01
29 87 0.99
ACGTcount: A:0.50, C:0.11, G:0.01, T:0.38
Consensus pattern (29 bp):
TTTTTATAAATTACAATAAATACCATAAC
Found at i:717515 original size:11 final size:11
Alignment explanation
Indices: 717499--717536 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
717489 TTAATTAAAT
717499 TAAAATAATAA
1 TAAAATAATAA
717510 TAAAATGAATAA
1 TAAAAT-AATAA
717522 -AAAATAATAA
1 TAAAATAATAA
717532 TAAAA
1 TAAAA
717537 ATAAAAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 5 0.20
11 15 0.60
12 5 0.20
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:717552 original size:19 final size:20
Alignment explanation
Indices: 717500--717558 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 20
717490 TAATTAAATT
*
717500 AAAATAATAATAAAATGAATAA
1 AAAATAATAATACAA--AATAA
717522 AAAATAATAATA-AAAATAA
1 AAAATAATAATACAAAATAA
*
717541 AAGA-AATAAATACAAAAT
1 AAAATAAT-AATACAAAAT
717559 GTTGGATCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
18 3 0.09
19 12 0.35
20 5 0.15
21 2 0.06
22 12 0.35
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.20
Consensus pattern (20 bp):
AAAATAATAATACAAAATAA
Found at i:717831 original size:30 final size:30
Alignment explanation
Indices: 717795--717854 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
717785 GATCCGGTCG
717795 GGTTTTCGGGTCGGCTATAAAGCCCAACAA
1 GGTTTTCGGGTCGGCTATAAAGCCCAACAA
*
717825 GGTTTTCGGGTCGGGTATAAAGCCCAACAA
1 GGTTTTCGGGTCGGCTATAAAGCCCAACAA
717855 TCAGAAACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (30 bp):
GGTTTTCGGGTCGGCTATAAAGCCCAACAA
Found at i:718813 original size:28 final size:27
Alignment explanation
Indices: 718765--718817 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
718755 CAATAAATAA
718765 TATATAATATATAAATATTTTTAAAAAC
1 TATATAATATAT-AATATTTTTAAAAAC
* *
718793 TATATAATATATACTTTTTTTAAAA
1 TATATAATATATAATATTTTTAAAA
718818 TGTTTTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (27 bp):
TATATAATATATAATATTTTTAAAAAC
Found at i:718867 original size:24 final size:26
Alignment explanation
Indices: 718820--718872 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
718810 TTTTAAAATG
*
718820 TTTTCAAAAATTATATATTATATATA
1 TTTTCAAAAACTATATATTATATATA
718846 TTTTCAAAAACTATATATTATATATA
1 TTTTCAAAAACTATATATTATATATA
718872 T
1 T
718873 ATATATTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (26 bp):
TTTTCAAAAACTATATATTATATATA
Found at i:718878 original size:41 final size:40
Alignment explanation
Indices: 718843--719095 Score: 215
Period size: 40 Copynumber: 6.7 Consensus size: 40
718833 TATATTATAT
718843 ATATTTTCAAAAACTATATATTATATATATATATATTCAA
1 ATATTTTCAAAAACTATATATTATATATATATATATTCAA
**
718883 A-ATGTTTCTAAAATTTATATATTATATATATATAT-TTCAAA
1 ATAT-TTTC-AAAAACTATATATTATATATATATATATTC-AA
* * *
718924 ATATTTACAAAAAC--TACA-TATAT-T-T-T-CA---AA
1 ATATTTTCAAAAACTATATATTATATATATATATATTCAA
* *
718954 ATATTTTCAAAAACTATATATTATATATATGT-TTTTCAAA
1 ATATTTTCAAAAACTATATATTATATATATATATATTC-AA
718994 ATATTTTCAAAAACTATATA-T-TATATATAT-T-TTCAA
1 ATATTTTCAAAAACTATATATTATATATATATATATTCAA
* *
719030 A-ATATTCAAAAACTATATATTATATATATGT-T-TTCAA
1 ATATTTTCAAAAACTATATATTATATATATATATATTCAA
*
719067 A-ACGTTTTCAAAATCTATATATTATATAT
1 ATA--TTTTCAAAAACTATATATTATATAT
719096 GTTCTCAAAA
Statistics
Matches: 178, Mismatches: 16, Indels: 39
0.76 0.07 0.17
Matches are distributed among these distances:
30 15 0.08
32 3 0.02
33 5 0.03
34 2 0.01
35 19 0.11
36 6 0.03
37 24 0.13
38 12 0.07
39 26 0.15
40 34 0.19
41 30 0.17
42 2 0.01
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (40 bp):
ATATTTTCAAAAACTATATATTATATATATATATATTCAA
Found at i:718953 original size:30 final size:31
Alignment explanation
Indices: 718910--718979 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 31
718900 TATATTATAT
718910 ATATATATTTCAAAATATTTACAAAAACTAC
1 ATATATATTTCAAAATATTTACAAAAACTAC
* *
718941 ATATAT-TTTCAAAATATTTTCAAAAACTAT
1 ATATATATTTCAAAATATTTACAAAAACTAC
718971 ATATTATAT
1 ATA-TATAT
718980 ATATGTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 25 0.71
31 9 0.26
32 1 0.03
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (31 bp):
ATATATATTTCAAAATATTTACAAAAACTAC
Found at i:718972 original size:70 final size:69
Alignment explanation
Indices: 718871--719068 Score: 229
Period size: 70 Copynumber: 2.8 Consensus size: 69
718861 TATTATATAT
* * ** *
718871 ATATATATTCAAAATGTTTCTAAAATTTATATATTATATATATATATTTCAAAATATTTACAAAA
1 ATATATTTTCAAAATATTTC-AAAAACTATATATTATATATATGT-TTTCAAAATATTTACAAAA
718936 AC-TAC
64 ACTTAC
*
718941 ATATATTTTCAAAATATTTTCAAAAACTATATATTATATATATGTTTTTCAAAATATTTTCAAAA
1 ATATATTTTCAAAATA-TTTCAAAAACTATATATTATATATATG-TTTTCAAAATATTTACAAAA
*
719006 ACTATATATTAT
64 AC------TTAC
719018 ATATATTTTCAAAATA-TTCAAAAACTATATATTATATATATGTTTTCAAAA
1 ATATATTTTCAAAATATTTCAAAAACTATATATTATATATATGTTTTCAAAA
719069 CGTTTTCAAA
Statistics
Matches: 112, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
70 54 0.48
71 5 0.04
74 9 0.08
75 26 0.23
77 18 0.16
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (69 bp):
ATATATTTTCAAAATATTTCAAAAACTATATATTATATATATGTTTTCAAAATATTTACAAAAAC
TTAC
Found at i:719105 original size:37 final size:39
Alignment explanation
Indices: 718941--719095 Score: 237
Period size: 40 Copynumber: 4.1 Consensus size: 39
718931 CAAAAACTAC
*
718941 ATATATTTTCAAAATATTTTCAAAAACTATATATTATAT
1 ATATGTTTTCAAAATATTTTCAAAAACTATATATTATAT
718980 ATATGTTTTTCAAAATATTTTCAAAAACTATATATTATAT
1 ATATG-TTTTCAAAATATTTTCAAAAACTATATATTATAT
719020 ATA--TTTTCAAAATA--TTCAAAAACTATATATTATAT
1 ATATGTTTTCAAAATATTTTCAAAAACTATATATTATAT
** *
719055 ATATGTTTTCAAAACGTTTTCAAAATCTATATATTATAT
1 ATATGTTTTCAAAATATTTTCAAAAACTATATATTATAT
719094 AT
1 AT
719096 GTTCTCAAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
35 24 0.22
37 20 0.19
39 26 0.24
40 37 0.35
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (39 bp):
ATATGTTTTCAAAATATTTTCAAAAACTATATATTATAT
Found at i:722493 original size:23 final size:23
Alignment explanation
Indices: 722446--722512 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
722436 TTTAATGAGT
* *
722446 GGTCCTTCGGG--ATATCTATGT
1 GGTCCTTCGGGACATTTCTATGC
722467 GGTCCTTCGGGACATTTCTATGC
1 GGTCCTTCGGGACATTTCTATGC
*
722490 GGTCCTTCGGGACAAATTCTATG
1 GGTCCTTCGGGAC-ATTTCTATG
722513 TTCCCTAGTG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
21 11 0.28
23 21 0.52
24 8 0.20
ACGTcount: A:0.16, C:0.22, G:0.27, T:0.34
Consensus pattern (23 bp):
GGTCCTTCGGGACATTTCTATGC
Found at i:722732 original size:6 final size:6
Alignment explanation
Indices: 722721--722756 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
722711 ATAAATGGAT
722721 TAATGA TAATGA TAATGA TAATGA TAATGA TAATGA
1 TAATGA TAATGA TAATGA TAATGA TAATGA TAATGA
722757 CAATAATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (6 bp):
TAATGA
Found at i:727900 original size:23 final size:21
Alignment explanation
Indices: 727857--727902 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
727847 TAAGGAGTGT
* *
727857 TCATTTGGGACATCTATGTGG
1 TCATTCGGGACATCTACGTGG
727878 TCATTCGGGACATTTCTACGTGG
1 TCATTCGGGACA--TCTACGTGG
727901 TC
1 TC
727903 CTTCATGACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.52
23 10 0.48
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.37
Consensus pattern (21 bp):
TCATTCGGGACATCTACGTGG
Found at i:734609 original size:22 final size:23
Alignment explanation
Indices: 734567--734615 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
734557 TTAATTTCTG
734567 TTTGGGTGCTATTTGTATAAA-A
1 TTTGGGTGCTATTTGTATAAATA
* *
734589 TTTGGGTGTTAGTTTG-GTAAATA
1 TTTGGGTGCTA-TTTGTATAAATA
734612 TTTG
1 TTTG
734616 CAGAATATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.22, C:0.02, G:0.27, T:0.49
Consensus pattern (23 bp):
TTTGGGTGCTATTTGTATAAATA
Found at i:760319 original size:59 final size:59
Alignment explanation
Indices: 760025--760306 Score: 437
Period size: 59 Copynumber: 4.8 Consensus size: 59
760015 ATGTATGATA
760025 AATTTCCA-A-AGGGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTAAGTGTATG
1 AATTTCCAGATAGGGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTAAGTGTATG
*
760082 AATTTCCAGAT-GTGGCACTTTGTGTGTTAAAATGGTAAGGAAATCATACTAAGTGTATG
1 AATTTCCAGATAG-GGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTAAGTGTATG
* *
760141 AATTTCCAGACAGGGCACTTTGTGTGCTAAAATGGTAATGAAATCATACTAAGTGTATG
1 AATTTCCAGATAGGGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTAAGTGTATG
760200 AATTTCCAGATAGGGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTAAGTGTATG
1 AATTTCCAGATAGGGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTAAGTGTATG
** * * * *
760259 AATTTTGATATAGGGTA-TTCTGTGTGCTAAAATGATAAGGAAGTCATA
1 AATTTCCAGATAGGGCACTT-TGTGTGCTAAAATGGTAAGGAAATCATA
760307 TTGTTTGTAT
Statistics
Matches: 208, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
57 8 0.04
58 4 0.02
59 195 0.94
60 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (59 bp):
AATTTCCAGATAGGGCACTTTGTGTGCTAAAATGGTAAGGAAATCATACTAAGTGTATG
Found at i:762832 original size:19 final size:18
Alignment explanation
Indices: 762801--762838 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
762791 TTAATTAAAT
*
762801 TAAAATAAAAAATAAAAA
1 TAAAAGAAAAAATAAAAA
762819 TAAAAGAAATAAATAAAAA
1 TAAAAGAAA-AAATAAAAA
762838 T
1 T
762839 GTTGGATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (18 bp):
TAAAAGAAAAAATAAAAA
Found at i:764077 original size:10 final size:10
Alignment explanation
Indices: 764037--764083 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
764027 AAAAAGAAAT
764037 TAATAAATAA
1 TAATAAATAA
* *
764047 TAA-ATTACAA
1 TAATA-AATAA
764057 TAATAAATAA
1 TAATAAATAA
764067 TAATAAATAA
1 TAATAAATAA
764077 TATATAA
1 TA-ATAA
764084 TACTAAACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 24 0.80
11 5 0.17
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (10 bp):
TAATAAATAA
Found at i:764085 original size:27 final size:27
Alignment explanation
Indices: 764037--764109 Score: 76
Period size: 27 Copynumber: 2.6 Consensus size: 27
764027 AAAAAGAAAT
*
764037 TAATAAATAATAAATTACAATAATAAA-TAA
1 TAATAAATAAT--A-TATAATAATAAACT-A
*
764067 TAATAAATAATATATAATACTAAACTA
1 TAATAAATAATATATAATAATAAACTA
*
764094 TAATATATAATATATA
1 TAATAAATAATATATA
764110 TAAATATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 26 0.67
28 2 0.05
30 11 0.28
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (27 bp):
TAATAAATAATATATAATAATAAACTA
Found at i:764162 original size:37 final size:37
Alignment explanation
Indices: 764111--764250 Score: 149
Period size: 37 Copynumber: 4.1 Consensus size: 37
764101 TAATATATAT
*
764111 AAATATTTTTAAAAACTATATAATATATATATTTTCA
1 AAATATTTTCAAAAACTATATAATATATATATTTTCA
*
764148 AAATGTTTTCAAAAA-T-TAT-ATAT-TATA---T--
1 AAATATTTTCAAAAACTATATAATATATATATTTTCA
*
764176 --ATATTTTCAAAGACTATATAATATATATATTTTCA
1 AAATATTTTCAAAAACTATATAATATATATATTTTCA
* * *
764211 AAATGTTTTCAAAAATTATATATTATATATATTTTCA
1 AAATATTTTCAAAAACTATATAATATATATATTTTCA
764248 AAA
1 AAA
764251 ACTATATATA
Statistics
Matches: 84, Mismatches: 8, Indels: 22
0.74 0.07 0.19
Matches are distributed among these distances:
26 11 0.13
27 1 0.01
28 3 0.04
29 4 0.05
30 5 0.06
33 5 0.06
34 4 0.05
35 3 0.04
36 1 0.01
37 47 0.56
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (37 bp):
AAATATTTTCAAAAACTATATAATATATATATTTTCA
Found at i:764182 original size:26 final size:26
Alignment explanation
Indices: 764153--764213 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
764143 TTTCAAAATG
* *
764153 TTTTCAAAAATTATATATTATATATA
1 TTTTCAAAAACTATATAATATATATA
*
764179 TTTTCAAAGACTATATAATATATATA
1 TTTTCAAAAACTATATAATATATATA
764205 TTTTCAAAA
1 TTTTCAAAA
764214 TGTTTTCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.46
Consensus pattern (26 bp):
TTTTCAAAAACTATATAATATATATA
Found at i:764200 original size:63 final size:63
Alignment explanation
Indices: 764103--764440 Score: 406
Period size: 63 Copynumber: 5.4 Consensus size: 63
764093 ATAATATATA
* *
764103 ATATA-TATAAATATTTTTAAAAACTATATAATATATATATTTTCAAAATGTTTTCAAAAATT
1 ATATATTATATATATTTTCAAAAACTATATAATATATATATTTTCAAAATGTTTTCAAAAATT
*
764165 ATATATTATATATATTTTCAAAGACTATATAATATATATATTTTCAAAATGTTTTCAAAAATT
1 ATATATTATATATATTTTCAAAAACTATATAATATATATATTTTCAAAATGTTTTCAAAAATT
*
764228 ATATATTATATATATTTTCAAAAAC--TAT-ATATATATA--TTCAAAATGTTTTCAAAAACT
1 ATATATTATATATATTTTCAAAAACTATATAATATATATATTTTCAAAATGTTTTCAAAAATT
* * * *
764286 ATATA-T-TATATATTTTCAAAATATTTTCAAAAACTATATATATTTTCAAAATATTTTCAAAAA
1 ATATATTATATATATTTTCAAAA-ACTAT--ATAA-TATATATATTTTCAAAATGTTTTCAAAAA
*
764349 CT
62 TT
* *
764351 ATATATTATATATATTTTCAAAAATATACATATATATATATATATTTTCAAAACGTTTTC-AAAA
1 ATATATTATATATATTTTCAAAAA-CT--ATATA-ATATATATATTTTCAAAATGTTTTCAAAAA
764415 TCT
62 T-T
* * *
764418 ATTTATTATATATGTTCTCAAAA
1 ATATATTATATATATTTTCAAAA
764441 TTTTATATAT
Statistics
Matches: 242, Mismatches: 17, Indels: 29
0.84 0.06 0.10
Matches are distributed among these distances:
56 15 0.06
57 2 0.01
58 25 0.10
59 1 0.00
60 9 0.04
61 4 0.02
62 6 0.02
63 86 0.36
65 25 0.10
66 6 0.02
67 61 0.25
68 1 0.00
69 1 0.00
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.45
Consensus pattern (63 bp):
ATATATTATATATATTTTCAAAAACTATATAATATATATATTTTCAAAATGTTTTCAAAAATT
Found at i:764290 original size:26 final size:26
Alignment explanation
Indices: 764201--764292 Score: 78
Period size: 26 Copynumber: 3.3 Consensus size: 26
764191 ATATAATATA
* *
764201 TATATTTTCAAAATGTTTTCAAAAAT
1 TATATATTCAAAATGTTTTCAAAAAC
* *
764227 TATATATT-ATATATATTTTCAAAAAC
1 TATATATTCA-AAATGTTTTCAAAAAC
764253 TATATATATATATTCAAAATGTTTTCAAAAAC
1 ------TATATATTCAAAATGTTTTCAAAAAC
764285 TATATATT
1 TATATATT
764293 ATATATTTTC
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
25 1 0.02
26 28 0.54
32 22 0.42
33 1 0.02
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.46
Consensus pattern (26 bp):
TATATATTCAAAATGTTTTCAAAAAC
Found at i:764311 original size:11 final size:11
Alignment explanation
Indices: 764295--764347 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
764285 TATATATTAT
764295 ATATTTTCAAA
1 ATATTTTCAAA
764306 ATATTTTCAAA
1 ATATTTTCAAA
* * *
764317 A-ACTAT--AT
1 ATATTTTCAAA
764325 ATATTTTCAAA
1 ATATTTTCAAA
764336 ATATTTTCAAA
1 ATATTTTCAAA
764347 A
1 A
764348 ACTATATATT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
8 2 0.06
9 3 0.09
10 3 0.09
11 25 0.76
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.43
Consensus pattern (11 bp):
ATATTTTCAAA
Found at i:764386 original size:26 final size:26
Alignment explanation
Indices: 764336--764391 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
764326 TATTTTCAAA
*
764336 ATATTTTCAAAAACTATATATTATAT
1 ATATTTTCAAAAACTATACATTATAT
764362 ATATTTTCAAAAA-TATACATATATAT
1 ATATTTTCAAAAACTATACAT-TATAT
764388 ATAT
1 ATAT
764392 ATATTTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 6 0.21
26 22 0.79
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (26 bp):
ATATTTTCAAAAACTATACATTATAT
Found at i:764425 original size:67 final size:67
Alignment explanation
Indices: 764253--764462 Score: 259
Period size: 67 Copynumber: 3.2 Consensus size: 67
764243 TTTCAAAAAC
* *
764253 TATATATATATATTCAAAATGTTTTCAAAAACTATATA-T-TATATATTTTCAAAATATTTTCA-
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATATTTTCAAAA-ATTTACAT
764315 A-A
65 ATA
* * *
764317 AACTATATATATTTTCAAAATATTTTCAAAAACTATATATTATATATATTTTCAAAAATATACAT
1 TA-TATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATATTTTCAAAAATTTACAT
764382 ATA
65 ATA
* * * * * * *
764385 TATATATATATTTTCAAAACGTTTTCAAAATCTATTTATTATATATGTTCTCAAAATTTTATATA
1 TATATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATATTTTCAAAAATTTACATA
764450 TA
66 TA
764452 T-TATATATATT
1 TATATATATATT
764463 AAATAGCACC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
64 1 0.01
65 34 0.27
66 16 0.13
67 73 0.58
68 2 0.02
ACGTcount: A:0.44, C:0.08, G:0.01, T:0.47
Consensus pattern (67 bp):
TATATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATATTTTCAAAAATTTACATA
TA
Found at i:764450 original size:65 final size:65
Alignment explanation
Indices: 764255--764462 Score: 251
Period size: 65 Copynumber: 3.2 Consensus size: 65
764245 TCAAAAACTA
* * *
764255 TATATATATATTCAAAATGTTTTCAAAAACTATATATTATATATTTTCAAAATATTT-TCAAAAA
1 TATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATTTTCAAAATATTTAT-ATATA
764319 C
65 C
* **
764320 TATATATATTTTCAAAATATTTTCAAAAACTATATATTATATATATTTTCAAAAATATACATATA
1 TATATATATTTTCAAAATGTTTTCAAAAACTATATA-T-TATATATTTTC-AAAATATTTATATA
764385 TA-
63 TAC
* * *
764387 TATATATATTTTCAAAACGTTTTCAAAATCTATTTATTATATATGTTCTCAAAAT-TTTATATAT
1 TATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATAT-TT-TCAAAATATTTATATAT
*
764451 AT
64 AC
764453 TATATATATT
1 TATATATATT
764463 AAATAGCACC
Statistics
Matches: 124, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
65 49 0.40
66 19 0.15
67 45 0.36
68 10 0.08
69 1 0.01
ACGTcount: A:0.44, C:0.08, G:0.01, T:0.47
Consensus pattern (65 bp):
TATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATTTTCAAAATATTTATATATAC
Found at i:774348 original size:36 final size:36
Alignment explanation
Indices: 774308--774523 Score: 308
Period size: 36 Copynumber: 6.0 Consensus size: 36
774298 CAAAGAAGAA
* *
774308 AAGTGTAATTTAGTGCAAAGATTACTGAAAGAAATT
1 AAGTGTAACTTAGTGCAAAGATTACAGAAAGAAATT
* *
774344 AAGTGTAACTTAGTGAAAAGGTTACAGAAAGAAATT
1 AAGTGTAACTTAGTGCAAAGATTACAGAAAGAAATT
* *
774380 AAGTGAAACTTAGTGCAAAGCTTACAGAAAGAAATT
1 AAGTGTAACTTAGTGCAAAGATTACAGAAAGAAATT
*
774416 AAGTGTAACTTAGTGCAAAGGTTACAGAAAGAAATT
1 AAGTGTAACTTAGTGCAAAGATTACAGAAAGAAATT
**
774452 AAGTG-AAGCTCGGTGCAAAGATTACAGAAAGAAATT
1 AAGTGTAA-CTTAGTGCAAAGATTACAGAAAGAAATT
* * *
774488 AAGTGTAACTTGGTGCATAGATTACTGAAAGAAATT
1 AAGTGTAACTTAGTGCAAAGATTACAGAAAGAAATT
774524 CTCATATGCA
Statistics
Matches: 163, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
35 2 0.01
36 159 0.98
37 2 0.01
ACGTcount: A:0.44, C:0.08, G:0.22, T:0.25
Consensus pattern (36 bp):
AAGTGTAACTTAGTGCAAAGATTACAGAAAGAAATT
Found at i:776436 original size:20 final size:20
Alignment explanation
Indices: 776400--776437 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
776390 ATCCTATTCT
**
776400 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
776420 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
776438 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:787210 original size:31 final size:31
Alignment explanation
Indices: 787172--787238 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
787162 ACGGTTGAGG
* *
787172 GACTAAAATCGAACGGATTGATTATATTAGA
1 GACTAAAATCGAACGGATCGATAATATTAGA
* *
787203 GACTAAAATCGAATGGATCGATAATGTTAGA
1 GACTAAAATCGAACGGATCGATAATATTAGA
787234 GACTA
1 GACTA
787239 TTTCCCCTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (31 bp):
GACTAAAATCGAACGGATCGATAATATTAGA
Found at i:788104 original size:26 final size:25
Alignment explanation
Indices: 788050--788105 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
788040 TCTATTTTCG
* *
788050 CCCTTTTAGAATTTTAGAAAATTAT
1 CCCTTTTAAAATTTTAGAAAATTAC
*
788075 CCCTTTCTAAAATTTTA-AAAGTTTAC
1 CCCTTT-TAAAATTTTAGAAA-ATTAC
788101 CCCTT
1 CCCTT
788106 AGTATAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (25 bp):
CCCTTTTAAAATTTTAGAAAATTAC
Found at i:792520 original size:31 final size:32
Alignment explanation
Indices: 792477--792560 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 32
792467 TTTAATGAAC
* * *
792477 TTAACGAGCAACGAGTTGAGCAGC-AAATTCT
1 TTAACGAACAACGAGTCGAGCAACAAAATTCT
* *
792508 TTAACGACCAACGAGTCGAGCAACAAAATTTT
1 TTAACGAACAACGAGTCGAGCAACAAAATTCT
792540 TTAACGAAC-ACGAGTCGAGCA
1 TTAACGAACAACGAGTCGAGCA
792561 CTAGCCATCT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 33 0.70
32 14 0.30
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.20
Consensus pattern (32 bp):
TTAACGAACAACGAGTCGAGCAACAAAATTCT
Found at i:793207 original size:36 final size:36
Alignment explanation
Indices: 793166--793241 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
793156 ATTTTCGGGA
*
793166 TTTTGCTATTTTTGGCAAAATTCGAATAAATACGAT
1 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
793202 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
1 TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
793238 TTTT
1 TTTT
793242 TTAGCTATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (36 bp):
TTTTGCTATTTTTGGCAAAATTCGAATAAAGACGAT
Found at i:794904 original size:31 final size:31
Alignment explanation
Indices: 794842--794938 Score: 113
Period size: 31 Copynumber: 3.1 Consensus size: 31
794832 TAAATGTAAT
* * * * *
794842 AAATTGATTACTAATATTATTGGTTTGTAAC
1 AAATTGATAACTAACATTATCGATTTATAAC
*
794873 AAATTGATAACTAACGTTATCGATTTATAAC
1 AAATTGATAACTAACATTATCGATTTATAAC
* * *
794904 AAATTAATCACTAACATTGTCGATTTATAAC
1 AAATTGATAACTAACATTATCGATTTATAAC
794935 AAAT
1 AAAT
794939 CGATCATTCA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 56 1.00
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.38
Consensus pattern (31 bp):
AAATTGATAACTAACATTATCGATTTATAAC
Found at i:797260 original size:6 final size:6
Alignment explanation
Indices: 797249--797273 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
797239 TCTTAATTAC
797249 ATCATT ATCATT ATCATT ATCATT A
1 ATCATT ATCATT ATCATT ATCATT A
797274 ATCCATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (6 bp):
ATCATT
Found at i:797543 original size:21 final size:21
Alignment explanation
Indices: 797519--797565 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
797509 TAGAAATATT
* *
797519 CCGAAGGACCACATATATGTC
1 CCGAAAGACCACATAGATGTC
797540 CCGAAAGACCACATAGATGTC
1 CCGAAAGACCACATAGATGTC
797561 CCGAA
1 CCGAA
797566 TAGGGATAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.30, G:0.19, T:0.15
Consensus pattern (21 bp):
CCGAAAGACCACATAGATGTC
Found at i:797764 original size:12 final size:12
Alignment explanation
Indices: 797749--797814 Score: 80
Period size: 12 Copynumber: 5.6 Consensus size: 12
797739 GTTATTTAAA
797749 CGGGTATTGGGC
1 CGGGTATTGGGC
*
797761 CGGGTATTGGGT
1 CGGGTATTGGGC
*
797773 CGGGTATTGGGT
1 CGGGTATTGGGC
797785 C-GGTATTGGGC
1 CGGGTATTGGGC
* * *
797796 CGAGAATCGGGC
1 CGGGTATTGGGC
797808 CGGGTAT
1 CGGGTAT
797815 ATATATATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
11 10 0.22
12 36 0.78
ACGTcount: A:0.12, C:0.15, G:0.47, T:0.26
Consensus pattern (12 bp):
CGGGTATTGGGC
Found at i:797776 original size:24 final size:24
Alignment explanation
Indices: 797749--797814 Score: 80
Period size: 23 Copynumber: 2.8 Consensus size: 24
797739 GTTATTTAAA
*
797749 CGGGTATTGGGCCGGGTATTGGGT
1 CGGGTATTGGGCCGGGTATTGGGC
*
797773 CGGGTATTGGGTC-GGTATTGGGC
1 CGGGTATTGGGCCGGGTATTGGGC
* * *
797796 CGAGAATCGGGCCGGGTAT
1 CGGGTATTGGGCCGGGTAT
797815 ATATATATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 18 0.51
24 17 0.49
ACGTcount: A:0.12, C:0.15, G:0.47, T:0.26
Consensus pattern (24 bp):
CGGGTATTGGGCCGGGTATTGGGC
Found at i:798137 original size:21 final size:21
Alignment explanation
Indices: 798111--798192 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 21
798101 AGGATCACAT
798111 ATATATATTCCAAAGGACCAA
1 ATATATATTCCAAAGGACCAA
* * * *
798132 ATATAT-GTCTCGAAGAACCAT
1 ATATATATTC-CAAAGGACCAA
* ** *
798153 ATATATGTTCCAAAGGATTAC
1 ATATATATTCCAAAGGACCAA
* *
798174 ATATATATCCCGAAGGACC
1 ATATATATTCCAAAGGACC
798193 TTGTAGAACC
Statistics
Matches: 44, Mismatches: 15, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
20 2 0.05
21 40 0.91
22 2 0.05
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (21 bp):
ATATATATTCCAAAGGACCAA
Found at i:798178 original size:42 final size:42
Alignment explanation
Indices: 798108--798188 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
798098 TTAAGGATCA
* *
798108 CATATATATATTCCAAAGGACCAAATATATGTCTCGAAGAAC
1 CATATATATATTCCAAAGGACCAAATATATATCCCGAAGAAC
* ** *
798150 CATATATATGTTCCAAAGGATTACATATATATCCCGAAG
1 CATATATATATTCCAAAGGACCAAATATATATCCCGAAG
798189 GACCTTGTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (42 bp):
CATATATATATTCCAAAGGACCAAATATATATCCCGAAGAAC
Found at i:798699 original size:2 final size:2
Alignment explanation
Indices: 798647--798687 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
798637 TCACTTAAAT
798647 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
798688 TTACTTATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:802860 original size:20 final size:20
Alignment explanation
Indices: 802835--802889 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
802825 CGAAATTCCC
802835 ATGTATCGATACACCCCTTA
1 ATGTATCGATACACCCCTTA
*
802855 ATGTATCGATGCACCCCTTA
1 ATGTATCGATACACCCCTTA
802875 ATGTATCGATACACC
1 ATGTATCGATACACC
802890 TTCAAAATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (20 bp):
ATGTATCGATACACCCCTTA
Found at i:805288 original size:23 final size:23
Alignment explanation
Indices: 805262--805308 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
805252 AAAATTTGTT
*
805262 CCGAAGGACTGCGTAGAAATGTC
1 CCGAAGGACTGCATAGAAATGTC
805285 CCGAAGGACTGCATAGAAATGTC
1 CCGAAGGACTGCATAGAAATGTC
805308 C
1 C
805309 TGAAAGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.28, T:0.17
Consensus pattern (23 bp):
CCGAAGGACTGCATAGAAATGTC
Found at i:805322 original size:23 final size:23
Alignment explanation
Indices: 805275--805322 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
805265 AAGGACTGCG
* **
805275 TAGAAATGTCCCGAAGGACTGCA
1 TAGAAATGTCCCGAAAGACCACA
*
805298 TAGAAATGTCCTGAAAGACCACA
1 TAGAAATGTCCCGAAAGACCACA
805321 TA
1 TA
805323 TATATCCCGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (23 bp):
TAGAAATGTCCCGAAAGACCACA
Found at i:809561 original size:29 final size:29
Alignment explanation
Indices: 809519--809611 Score: 186
Period size: 29 Copynumber: 3.2 Consensus size: 29
809509 TTAGCCCATA
809519 TACATTTTTTAGAACTAAAGATATGTGAG
1 TACATTTTTTAGAACTAAAGATATGTGAG
809548 TACATTTTTTAGAACTAAAGATATGTGAG
1 TACATTTTTTAGAACTAAAGATATGTGAG
809577 TACATTTTTTAGAACTAAAGATATGTGAG
1 TACATTTTTTAGAACTAAAGATATGTGAG
809606 TACATT
1 TACATT
809612 GAGGTTGTGC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.39
Consensus pattern (29 bp):
TACATTTTTTAGAACTAAAGATATGTGAG
Found at i:809722 original size:21 final size:21
Alignment explanation
Indices: 809697--809755 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
809687 TCGCATAGAA
*
809697 ATGTCCCGAAGGACCACACAT
1 ATGTCCCGAAGGACCACACAG
*
809718 ATGTCCCGAAGGACCACATAG
1 ATGTCCCGAAGGACCACACAG
*
809739 ATGTCCCGAATGACCAC
1 ATGTCCCGAAGGACCAC
809756 TCCTTAAGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.32, C:0.32, G:0.20, T:0.15
Consensus pattern (21 bp):
ATGTCCCGAAGGACCACACAG
Found at i:810341 original size:2 final size:2
Alignment explanation
Indices: 810303--810329 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
810293 CTTAAATTAT
810303 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
810330 TTACTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:820244 original size:32 final size:33
Alignment explanation
Indices: 820203--820329 Score: 122
Period size: 32 Copynumber: 4.0 Consensus size: 33
820193 AGAGTCGAGG
820203 GTTACCTATG-TCTTTCGAGACATATGGACAGT
1 GTTACCTATGTTCTTTCGAGACATATGGACAGT
* *
820235 GTTACCTATG-TCCTTCGGGACATATGGACAG-
1 GTTACCTATGTTCTTTCGAGACATATGGACAGT
*** *
820266 GATTACCTATGTTCTAAGGA-ACATATGGGCAGT
1 G-TTACCTATGTTCTTTCGAGACATATGGACAGT
* * *
820299 -TTACCTAGGTTCTTTAG-GACCTATGGACAGT
1 GTTACCTATGTTCTTTCGAGACATATGGACAGT
820330 TGCCGACGTT
Statistics
Matches: 77, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
31 25 0.32
32 49 0.64
33 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (33 bp):
GTTACCTATGTTCTTTCGAGACATATGGACAGT
Found at i:824811 original size:31 final size:32
Alignment explanation
Indices: 824690--824814 Score: 121
Period size: 32 Copynumber: 3.9 Consensus size: 32
824680 AGAGTCGAAG
* *
824690 GTTACCTATGTTTTTCA-AGACATATGGACAAT
1 GTTACCTATGTTCTT-AGGGACATATGGACAAT
* *
824722 GTTACCTATGTCCTTCGGGACATATGGAC-AT
1 GTTACCTATGTTCTTAGGGACATATGGACAAT
* * *
824753 GATTACCTATCTTCTAAGGAACATATGGACAAT
1 G-TTACCTATGTTCTTAGGGACATATGGACAAT
* * *
824786 -TTACCTAGGTTCTTTGGGACCTATGGACA
1 GTTACCTATGTTCTTAGGGACATATGGACA
824815 GTTGTCGAGG
Statistics
Matches: 75, Mismatches: 15, Indels: 7
0.77 0.15 0.07
Matches are distributed among these distances:
31 26 0.35
32 47 0.63
33 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (32 bp):
GTTACCTATGTTCTTAGGGACATATGGACAAT
Found at i:828985 original size:25 final size:25
Alignment explanation
Indices: 828939--828987 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
828929 ATTTTCACCC
* *
828939 CCTAGAATTTTATAAATCCGCCCCT
1 CCTAAAATTTTAGAAATCCGCCCCT
* *
828964 CCTAAAATTTTAGAAGTTCGCCCC
1 CCTAAAATTTTAGAAATCCGCCCC
828988 CTAACATAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (25 bp):
CCTAAAATTTTAGAAATCCGCCCCT
Found at i:833057 original size:2 final size:2
Alignment explanation
Indices: 833050--833084 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
833040 TCACCACCCA
833050 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
833085 AGAAAATCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:834398 original size:17 final size:17
Alignment explanation
Indices: 834374--834416 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
834364 CTCCCTGAAG
834374 CCCGTGACCAGCTCGCA
1 CCCGTGACCAGCTCGCA
*
834391 CTCGTGACCAGCTCGCA
1 CCCGTGACCAGCTCGCA
834408 CCCGTGACC
1 CCCGTGACC
834417 TGCAAGCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.16, C:0.47, G:0.23, T:0.14
Consensus pattern (17 bp):
CCCGTGACCAGCTCGCA
Found at i:837432 original size:1 final size:1
Alignment explanation
Indices: 837426--837455 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
837416 CTCGAATTTA
837426 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
837456 GCAAAAGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:847630 original size:10 final size:10
Alignment explanation
Indices: 847603--847638 Score: 56
Period size: 9 Copynumber: 3.6 Consensus size: 10
847593 GAAAATGAAA
847603 AAAAAAAAAT
1 AAAAAAAAAT
847613 -AAAAAAAAT
1 AAAAAAAAAT
847622 AAAAAAAAAT
1 AAAAAAAAAT
847632 GAAAAAA
1 -AAAAAA
847639 TGGAAAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 9 0.38
10 9 0.38
11 6 0.25
ACGTcount: A:0.89, C:0.00, G:0.03, T:0.08
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:847636 original size:9 final size:10
Alignment explanation
Indices: 847603--847638 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
847593 GAAAATGAAA
847603 AAAAAAAAAT
1 AAAAAAAAAT
847613 -AAAAAAAAT
1 AAAAAAAAAT
847622 AAAAAAAAAT
1 AAAAAAAAAT
*
847632 GAAAAAA
1 AAAAAAA
847639 TGGAAAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.89, C:0.00, G:0.03, T:0.08
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:848750 original size:53 final size:55
Alignment explanation
Indices: 848650--849265 Score: 188
Period size: 53 Copynumber: 11.7 Consensus size: 55
848640 AGATTTCCCA
848650 GCAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
1 GCAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
* * ** *
848705 GCAATTGA-TGAAGATTG-T-GGGTCTTATACTCTCTGAAGATGTAGGGGGCAGA-
1 GCAATT-ATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
* *
848757 -C--------ACGATCGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
1 GCAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
* * * * * * * *
848803 ACGATTGTTGAAGA-TATTCGAGT-TC-TATTCTCCTTAGAGAAAGAAGGAGC-GAAC
1 GCAATTATTGAAGATTGTTCGAGTCTCATACTCT-CTGA-AGAAATAGGGAGCAG-AC
** * * * *
848857 -C-CGT-TTGAAGAGATG-TCTAAGT-TCCATACTCCCT-AGAGAAAGAGGGAGC-GAAC
1 GCAATTATTGAAGA-TTGTTC-GAGTCT-CATACTCTCTGA-AGAAATAGGGAGCAG-AC
** * * * * * *
848910 -C---CGTGGAAGA-TATCCGAGTCCCATACTC-CGTAAAGAAAAAGGGAGC-GAAC
1 GCAATTATTGAAGATTGTTCGAGTCTCATACTCTC-TGAAGAAATAGGGAGCAG-AC
* * * *
848960 -CCA--GTTGAAGA-TGTTCGAGT-TCTATACTCCCTGAAGAAAGAGGGAG-AGAAC
1 GCAATTATTGAAGATTGTTCGAGTCTC-ATACTCTCTGAAGAAATAGGGAGCAG-AC
* ** *** * *
849011 CCGTTTGCAGAAGATT-TTCAAGT-TCTATACTCCCTGAAGAAATAGGGAGCAGAC
1 GCAATTATTGAAGATTGTTCGAGTCTC-ATACTCTCTGAAGAAATAGGGAGCAGAC
* * * * * *
849065 GCGATTGA-TGAAAATTG-T-GGGTCTTATACTCTCTGCAGAAATAGGGAGCCGAC
1 GCAATT-ATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
* * * * * * *
849118 ACGATTGTTGAAGATTGTTCGGGTCTTATACTCTCTGAAGAAATAGGGGGAAGAC
1 GCAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
** * * * *
849173 GTGATTGA-TGAGGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
1 GCAATT-ATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
* * * * *
849226 GCGATTGTTAAAGATTGTTCGGGTCTTATACTCTCTGAAG
1 GCAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAG
849266 GACTATGGAG
Statistics
Matches: 443, Mismatches: 72, Indels: 92
0.73 0.12 0.15
Matches are distributed among these distances:
43 5 0.01
44 1 0.00
45 29 0.07
47 1 0.00
49 1 0.00
50 30 0.07
51 47 0.11
52 16 0.04
53 146 0.33
54 78 0.18
55 88 0.20
56 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (55 bp):
GCAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
Found at i:848989 original size:51 final size:50
Alignment explanation
Indices: 848809--849060 Score: 227
Period size: 51 Copynumber: 4.9 Consensus size: 50
848799 AGACACGATT
* * *
848809 GTTGAAGATATTCGAGTTCTATTCTCCTTAGAGAAAGAA-GGAGCGAACCC
1 GTTGAAGATATTCGAGTTCTATACTCCCTAAAGAAA-AAGGGAGCGAACCC
* * * * *
848859 GTTTGAAGAGATGTCTAAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCC
1 G-TTGAAGATAT-TC-GAGTTCTATACTCCCTAAAGAAAAAGGGAGCGAACCC
* * * * *
848912 GTGGAAGATATCCGAGTCCCATACTCCGTAAAGAAAAAGGGAGCGAACCC
1 GTTGAAGATATTCGAGTTCTATACTCCCTAAAGAAAAAGGGAGCGAACCC
* * * *
848962 AGTTGAAGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAGAACCC
1 -GTTGAAGATATTCGAGTTCTATACTCCCTAAAGAAAAAGGGAGCGAACCC
* * * *
849013 GTTTGCAGAAGATTTTCAAGTTCTATACTCCCTGAAGAAATAGGGAGC
1 G-TT---GAAGATATTCGAGTTCTATACTCCCTAAAGAAAAAGGGAGC
849061 AGACGCGATT
Statistics
Matches: 166, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
50 34 0.20
51 53 0.32
52 11 0.07
53 31 0.19
54 37 0.22
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.22
Consensus pattern (50 bp):
GTTGAAGATATTCGAGTTCTATACTCCCTAAAGAAAAAGGGAGCGAACCC
Found at i:849011 original size:101 final size:101
Alignment explanation
Indices: 848764--849014 Score: 244
Period size: 103 Copynumber: 2.4 Consensus size: 101
848754 AGACACGATC
* * * * *
848764 GTTCGAG-TCTCATACTCTCTGAAGAAATAGGGAGCAG-ACACGATTGTTGAAGATATTCGAGTT
1 GTTCGAGTTCT-ATACTCCCTGAAGAAAGAGGGAG-AGAACCCG--TG-TGAAGATATCCGAGTC
* * * *
848827 CTATTCTCCTTAGAGAAAGAAGGAGCGAACCCGTTTGAAGA
61 CCATACTCCGTAAAGAAAGAAGGAGCGAACCCGTTTGAAGA
* * *
848868 GATGTCTAAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTG-GAAGATATCCGAGTCC
1 G-T-TC-GAGTTCTATACTCCCTGA-AGAAAGAGGGAGAGAACCCGTGTGAAGATATCCGAGTCC
848931 CATACTCCGTAAAGAAA-AAGGGAGCGAACCCAG-TTGAAGA
62 CATACTCCGTAAAGAAAGAA-GGAGCGAACCC-GTTTGAAGA
848971 TGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAGAACCCGT
1 -GTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAGAACCCGT
849015 TTGCAGAAGA
Statistics
Matches: 122, Mismatches: 15, Indels: 23
0.76 0.09 0.14
Matches are distributed among these distances:
101 34 0.28
102 5 0.04
103 46 0.38
104 3 0.02
105 3 0.02
106 4 0.03
107 25 0.20
108 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.22
Consensus pattern (101 bp):
GTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAGAACCCGTGTGAAGATATCCGAGTCCCATA
CTCCGTAAAGAAAGAAGGAGCGAACCCGTTTGAAGA
Found at i:849042 original size:54 final size:51
Alignment explanation
Indices: 848765--849060 Score: 244
Period size: 54 Copynumber: 5.7 Consensus size: 51
848755 GACACGATCG
* * *
848765 TTCGAG-TCTCATACTCTCTGAAGAAATAGGGAGC-AGACACGATTGTTGAAGATA
1 TTCGAGTTCT-ATACTCCCTGAAGAAAGAGGGAGCGA-ACCCG-TTG--GAAGATA
* * * * *
848819 TTCGAGTTCTATTCT-CCTTAGAGAAAGAAGGAGCGAACCCGTTTGAAGAGA
1 TTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTGGAAGATA
* *
848870 TGTCTAAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCG-TGGAAGATA
1 T-TC-GAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTGGAAGATA
* * * * * * *
848922 TCCGAGTCCCATACTCCGTAAAGAAAAAGGGAGCGAACCCAGTT-GAAGATG
1 TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCC-GTTGGAAGATA
* *
848973 TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAGAACCCGTTTGCAGAAGATT
1 TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCG-TTG--GAAGATA
* *
849027 TTCAAGTTCTATACTCCCTGAAGAAATAGGGAGC
1 TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGC
849061 AGACGCGATT
Statistics
Matches: 198, Mismatches: 31, Indels: 26
0.78 0.12 0.10
Matches are distributed among these distances:
50 32 0.16
51 51 0.26
52 11 0.06
53 35 0.18
54 65 0.33
55 4 0.02
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.23
Consensus pattern (51 bp):
TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTGGAAGATA
Found at i:849173 original size:108 final size:108
Alignment explanation
Indices: 849036--849265 Score: 361
Period size: 108 Copynumber: 2.1 Consensus size: 108
849026 TTTCAAGTTC
* * *
849036 TATACTCCCTGAAGAAATAGGGAGCAGACGCGATTGATGAAAATTGTGGGTCTTATACTCTCTGC
1 TATACTCTCTGAAGAAATAGGGAGAAGACGCGATTGATGAAAATTGTGGGTCTTATACTCTCTGA
* *
849101 AGAAATAGGGAGCCGACACGATTGTTGAAGATTGTTCGGGTCT
66 AGAAATAGGGAGCAGACACGATTGTTAAAGATTGTTCGGGTCT
* * **
849144 TATACTCTCTGAAGAAATAGGGGGAAGACGTGATTGATGAGGATTGTGGGTCTTATACTCTCTGA
1 TATACTCTCTGAAGAAATAGGGAGAAGACGCGATTGATGAAAATTGTGGGTCTTATACTCTCTGA
* *
849209 AGAAATAGGGGGCAGACGCGATTGTTAAAGATTGTTCGGGTCT
66 AGAAATAGGGAGCAGACACGATTGTTAAAGATTGTTCGGGTCT
849252 TATACTCTCTGAAG
1 TATACTCTCTGAAG
849266 GACTATGGAG
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 111 1.00
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (108 bp):
TATACTCTCTGAAGAAATAGGGAGAAGACGCGATTGATGAAAATTGTGGGTCTTATACTCTCTGA
AGAAATAGGGAGCAGACACGATTGTTAAAGATTGTTCGGGTCT
Found at i:849179 original size:55 final size:53
Alignment explanation
Indices: 849036--849265 Score: 307
Period size: 53 Copynumber: 4.3 Consensus size: 53
849026 TTTCAAGTTC
* *
849036 TATACTCCCTGAAGAAATAGGGAGCAGACGCGATTGATGAAAATTGTGGGTCT
1 TATACTCTCTGAAGAAATAGGGAGCAGACGCGATTGATGAAGATTGTGGGTCT
* * * *
849089 TATACTCTCTGCAGAAATAGGGAGCCGACACGATTGTTGAAGATTGTTCGGGTCT
1 TATACTCTCTGAAGAAATAGGGAGCAGACGCGATTGATGAAGATTG-T-GGGTCT
* * * *
849144 TATACTCTCTGAAGAAATAGGGGGAAGACGTGATTGATGAGGATTGTGGGTCT
1 TATACTCTCTGAAGAAATAGGGAGCAGACGCGATTGATGAAGATTGTGGGTCT
* * *
849197 TATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTAAAGATTGTTCGGGTCT
1 TATACTCTCTGAAGAAATAGGGAGCAGACGCGATTGATGAAGATTG-T-GGGTCT
849252 TATACTCTCTGAAG
1 TATACTCTCTGAAG
849266 GACTATGGAG
Statistics
Matches: 154, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
53 87 0.56
54 3 0.02
55 64 0.42
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (53 bp):
TATACTCTCTGAAGAAATAGGGAGCAGACGCGATTGATGAAGATTGTGGGTCT
Found at i:849878 original size:16 final size:16
Alignment explanation
Indices: 849839--849879 Score: 73
Period size: 17 Copynumber: 2.5 Consensus size: 16
849829 TCCCTGAAGC
849839 CCGTGACCAGCTCGCA
1 CCGTGACCAGCTCGCA
849855 CTCGTGACCAGCTCGCA
1 C-CGTGACCAGCTCGCA
849872 CCGTGACC
1 CCGTGACC
849880 TGCAAGCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.17, C:0.44, G:0.24, T:0.15
Consensus pattern (16 bp):
CCGTGACCAGCTCGCA
Found at i:851360 original size:13 final size:13
Alignment explanation
Indices: 851342--851366 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
851332 GTATATAGTT
851342 TTTTTATTTATTC
1 TTTTTATTTATTC
851355 TTTTTATTTATT
1 TTTTTATTTATT
851367 TCAAATTACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTATTTATTC
Found at i:852286 original size:24 final size:26
Alignment explanation
Indices: 852250--852298 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
852240 CGATGAATTA
852250 ATTTAATGTATTTTTT-A-AAAAATG
1 ATTTAATGTATTTTTTCATAAAAATG
852274 ATTTAAT-TAATTTTTTCATAAAAAT
1 ATTTAATGT-ATTTTTTCATAAAAAT
852299 TTGAGAGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 1 0.05
24 14 0.64
25 1 0.05
26 6 0.27
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (26 bp):
ATTTAATGTATTTTTTCATAAAAATG
Found at i:852839 original size:2 final size:2
Alignment explanation
Indices: 852832--852873 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
852822 ATACTGGGTT
852832 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
852874 ATCATTTAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:855820 original size:26 final size:27
Alignment explanation
Indices: 855776--855842 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
855766 TTTTCAAAAT
* *
855776 ATTTTT-AAAAAATATATAT-TATATA
1 ATTTTTGAAAACATACATATATATATA
*
855801 GTTTTTGAAAACATACATATAATATATA
1 ATTTTTGAAAACATACATAT-ATATATA
855829 ATTTTTGAAAACAT
1 ATTTTTGAAAACAT
855843 TTTGAAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.14
26 11 0.31
28 19 0.54
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (27 bp):
ATTTTTGAAAACATACATATATATATA
Found at i:855828 original size:37 final size:34
Alignment explanation
Indices: 855784--855966 Score: 181
Period size: 37 Copynumber: 5.5 Consensus size: 34
855774 ATATTTTTAA
855784 AAAATATATAT-TATATAGTTTTTGAAAACA--T
1 AAAATATATATATATATAGTTTTTGAAAACATTT
*
855815 -ACATATA-ATATATA-A-TTTTTGAAAACATTTT
1 AAAATATATATATATATAGTTTTTGAAAACA-TTT
855846 GAAAATATATATAATATATAGTTTTTGAAAACATTTT
1 -AAAATATATAT-ATATATAGTTTTTGAAAACA-TTT
*
855883 GAAAATATATATAATATATAGGTTTTGAAAACATTT
1 -AAAATATATAT-ATATATAGTTTTTGAAAACATTT
**
855919 -TGA-A-A-ATATATATAGTTTTTGAAAACATTT
1 AAAATATATATATATATAGTTTTTGAAAACATTT
**
855949 TGAATATATATATATATA
1 AAAATATATATATATATA
855967 TATTATATAG
Statistics
Matches: 130, Mismatches: 8, Indels: 25
0.80 0.05 0.15
Matches are distributed among these distances:
28 12 0.09
29 3 0.02
30 32 0.25
31 4 0.03
32 2 0.02
33 8 0.06
34 12 0.09
35 5 0.04
36 4 0.03
37 48 0.37
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.43
Consensus pattern (34 bp):
AAAATATATATATATATAGTTTTTGAAAACATTT
Found at i:855833 original size:28 final size:28
Alignment explanation
Indices: 855789--855842 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
855779 TTTAAAAAAT
* *
855789 ATATATTATATAGTTTTTGAAAACATAC
1 ATATAATATATAATTTTTGAAAACATAC
855817 ATATAATATATAATTTTTGAAAACAT
1 ATATAATATATAATTTTTGAAAACAT
855843 TTTGAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (28 bp):
ATATAATATATAATTTTTGAAAACATAC
Found at i:855954 original size:28 final size:29
Alignment explanation
Indices: 855896--855962 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 29
855886 AATATATATA
855896 ATATATAGGTTTTGAAAACATTTTGAAAAT
1 ATATATAGGTTTTGAAAACATTTTG-AAAT
*
855926 ATATATAGTTTTTGAAAACATTTTGAATAT
1 ATATATAGGTTTTGAAAACATTTTGAA-AT
855956 ATATATA
1 ATATATA
855963 TATATATTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 2 0.06
30 33 0.94
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.43
Consensus pattern (29 bp):
ATATATAGGTTTTGAAAACATTTTGAAAT
Found at i:855976 original size:43 final size:39
Alignment explanation
Indices: 855927--856011 Score: 109
Period size: 43 Copynumber: 2.1 Consensus size: 39
855917 TTTGAAAATA
855927 TATATAGTTTTTGAAAACAT-TTTGAATATATATATATATATAT
1 TATATAGTTTTT-AAAA-ATATTT--ATATATATAT-TATATAT
*
855970 TATATAGTTTTTAAAAATATTTATATGTATATTATATAT
1 TATATAGTTTTTAAAAATATTTATATATATATTATATAT
856009 TAT
1 TAT
856012 GAAATTATGG
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
39 10 0.25
40 9 0.22
41 2 0.05
42 7 0.17
43 12 0.30
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (39 bp):
TATATAGTTTTTAAAAATATTTATATATATATTATATAT
Found at i:856052 original size:13 final size:13
Alignment explanation
Indices: 856034--856069 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
856024 TATTATTTAC
*
856034 TATTTTCTTTTTT
1 TATTTTCATTTTT
856047 TATTTTCATTTTT
1 TATTTTCATTTTT
856060 TATTTT-ATTT
1 TATTTTCATTT
856070 CTTTTTGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.81
Consensus pattern (13 bp):
TATTTTCATTTTT
Found at i:856229 original size:14 final size:13
Alignment explanation
Indices: 856210--856254 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
856200 TACTATTTAC
856210 TATTTTCTTTTTT
1 TATTTTCTTTTTT
* *
856223 TCTTTTTATTTTTT
1 T-ATTTTCTTTTTT
856237 TATTTTCTTTTTT
1 TATTTTCTTTTTT
856250 TATTT
1 TATTT
856255 GGTCCAGGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (13 bp):
TATTTTCTTTTTT
Found at i:856234 original size:19 final size:19
Alignment explanation
Indices: 856210--856248 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
856200 TACTATTTAC
856210 TATTTTCTTT-TTTTCTTTT
1 TATTTT-TTTATTTTCTTTT
856229 TATTTTTTTATTTTCTTTT
1 TATTTTTTTATTTTCTTTT
856248 T
1 T
856249 TTATTTGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (19 bp):
TATTTTTTTATTTTCTTTT
Found at i:856299 original size:174 final size:169
Alignment explanation
Indices: 856015--856352 Score: 505
Period size: 174 Copynumber: 2.0 Consensus size: 169
856005 ATATTATGAA
*
856015 ATTATGGTTTATTATTTACTATTTTCTTTTTTTATTTTCATTTTTTATTTTATTTCTTTTTGATT
1 ATTATGGTTTATTATTTACTATTTACTTTTTTTATTTTCATTTTTTATTTTATTTCTTTTTGATT
* * * *
856080 TGATCAAGGTTCAGGGAGTCCATCATCGGTTCAGAAAGGAAGCCCAACCGAGCCAGCAAGCCTGA
66 TGATCAAGGTTCAGGGAGTCCAGCATCGGTCCAAAAAGGAAGCCCAACCGAGCCAGCAAGCCTAA
* *
856145 CCCTGCAAACATGCCCAAATCAACAATCCAACCACAGGT
131 CCCTGCAAACAGGCCCAAATCAACAACCCAACCACAGGT
* * *
856184 ATTATGGTTTATTATTTACTATTTACTATTTTCTTTTTTTCTTTTTATTTTTTTATTTTCTTTTT
1 ATTATGGTTTATTATTTACTATTTACT-TTTT-TTATTTTCATTTT-TTATTTTA-TTTC-TTTT
* * *
856249 TTATTTGGTCCAGGTTCAGGGAGTCCAGCATCGGTCCAAAAAGGAAGCCCAACCGAGCCAGCAAG
61 TGATTTGATCAAGGTTCAGGGAGTCCAGCATCGGTCCAAAAAGGAAGCCCAACCGAGCCAGCAAG
*
856314 CCTAACCCTGCAAACAGGCCCAGATCAACAACCCAACCA
126 CCTAACCCTGCAAACAGGCCCAAATCAACAACCCAACCA
856353 TAACCCAGTT
Statistics
Matches: 150, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
169 26 0.17
170 4 0.03
171 11 0.07
172 7 0.05
173 4 0.03
174 98 0.65
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (169 bp):
ATTATGGTTTATTATTTACTATTTACTTTTTTTATTTTCATTTTTTATTTTATTTCTTTTTGATT
TGATCAAGGTTCAGGGAGTCCAGCATCGGTCCAAAAAGGAAGCCCAACCGAGCCAGCAAGCCTAA
CCCTGCAAACAGGCCCAAATCAACAACCCAACCACAGGT
Found at i:857182 original size:64 final size:63
Alignment explanation
Indices: 857111--857289 Score: 209
Period size: 65 Copynumber: 2.8 Consensus size: 63
857101 TGGACCCTTG
* * *
857111 GTGCATCGGTGCACTAAG-AGTGCATCGATGCATCAAGTGCATTCGATGTTTCA-AAATAGCCAG
1 GTGCATCGGTGCA-T-GGTAGTGCATCGATGCATCAAATGCATTCGATGTTTCATAAA-AGCCAC
857174 A
63 A
* * * *
857175 GTGCATCGATGCATGGTTGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCA
1 GTGCATCGGTGCATGG-TAGTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAGCCACA
* *
857240 GTGTATCGGTGCATGGTATGTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGGTGCATGGTA-GTGCATCGATGCATCAAATGCATTCGATGTT
857290 CAATTTAATT
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 43 0.43
65 51 0.52
66 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (63 bp):
GTGCATCGGTGCATGGTAGTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAAGCCACA
Found at i:857267 original size:65 final size:65
Alignment explanation
Indices: 857130--857289 Score: 218
Period size: 65 Copynumber: 2.5 Consensus size: 65
857120 TGCACTAAGA
* *
857130 GTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGGTTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGTTG
* * * *
857194 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGTATCGGTGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAGTGCATCGATGCATGGT-
857258 T-
64 TG
*
857259 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
857290 CAATTTAATT
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
64 28 0.33
65 54 0.63
66 4 0.05
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGTTG
Found at i:857328 original size:65 final size:64
Alignment explanation
Indices: 857130--857339 Score: 216
Period size: 65 Copynumber: 3.2 Consensus size: 64
857120 TGCACTAAGA
* * **
857130 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAAT-AGCCAGAGTGCATCGATGCATGGTTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCAG-GTGCATCGATGCATGGTTG
* * *
857194 GTGCATCGATGCATCAAATGCATTCGATGTTTTC-ATAAAATCCTCA-GTGTATCGGTGCATGGT
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCAATATAAT--TCAGGTGCATCGATGCATGGT
857257 AT-
63 -TG
* * *
857259 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAATTCATGGTGCATCGATGAATGGATT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCA-GGTGCATCGATGCATGG-TT
857323 G
64 G
857324 GTGCATC-AGTGCATCA
1 GTGCATCGA-TGCATCA
857340 CTTTGATAAA
Statistics
Matches: 121, Mismatches: 14, Indels: 21
0.78 0.09 0.13
Matches are distributed among these distances:
62 3 0.02
63 3 0.02
64 50 0.41
65 62 0.51
66 1 0.01
67 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCAGGTGCATCGATGCATGGTTG
Found at i:859624 original size:20 final size:20
Alignment explanation
Indices: 859601--859720 Score: 168
Period size: 20 Copynumber: 6.0 Consensus size: 20
859591 GAATATGTAA
* *
859601 ATCGCAATGCGATTATGACT
1 ATCGCAACGCGATTCTGACT
859621 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
* *
859641 ATCTCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
859661 ATCGCAACGTGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
859681 ATCGCAACACGATTCTGACT
1 ATCGCAACGCGATTCTGACT
* *
859701 ATCACAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
859721 GTCACAACAC
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 89 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:859638 original size:60 final size:60
Alignment explanation
Indices: 859573--859712 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 60
859563 CGTTGCGATT
* * * *
859573 TTCTGACTATCGT-AATGCGAATATGTA-AATCGCAATGCGATTATGACTATCGCAACGCGA
1 TTCTGACTATC-TCAACGAGAATATG-ACAATCGCAACGCGATTATGACTATCGCAACACGA
* * * * *
859633 TTCTGACTATCTCAACGAGATTCTGACTATCGCAACGTGATTCTGACTATCGCAACACGA
1 TTCTGACTATCTCAACGAGAATATGACAATCGCAACGCGATTATGACTATCGCAACACGA
*
859693 TTCTGACTATCACAACGAGA
1 TTCTGACTATCTCAACGAGA
859713 TTCTGACTGT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
59 2 0.03
60 66 0.97
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (60 bp):
TTCTGACTATCTCAACGAGAATATGACAATCGCAACGCGATTATGACTATCGCAACACGA
Found at i:859713 original size:60 final size:60
Alignment explanation
Indices: 859601--859720 Score: 195
Period size: 60 Copynumber: 2.0 Consensus size: 60
859591 GAATATGTAA
* * *
859601 ATCGCAATGCGATTATGACTATCGCAACGCGATTCTGACTATCTCAACGAGATTCTGACT
1 ATCGCAACGCGATTATGACTATCGCAACACGATTCTGACTATCACAACGAGATTCTGACT
* *
859661 ATCGCAACGTGATTCTGACTATCGCAACACGATTCTGACTATCACAACGAGATTCTGACT
1 ATCGCAACGCGATTATGACTATCGCAACACGATTCTGACTATCACAACGAGATTCTGACT
859721 GTCACAACAC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (60 bp):
ATCGCAACGCGATTATGACTATCGCAACACGATTCTGACTATCACAACGAGATTCTGACT
Found at i:860581 original size:24 final size:24
Alignment explanation
Indices: 860549--860602 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
860539 GTATTCGAAA
*
860549 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTAGTCAATACCCGGAC
* *
860573 TTTGATCTTAGTCAATACTCGGAT
1 TTTGATCTTAGTCAATACCCGGAC
860597 TTTGAT
1 TTTGAT
860603 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATCTTAGTCAATACCCGGAC
Found at i:863208 original size:140 final size:140
Alignment explanation
Indices: 862956--863225 Score: 522
Period size: 140 Copynumber: 1.9 Consensus size: 140
862946 AAACGTTGTA
*
862956 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTAAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
863021 TGATTTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
863086 TATGTGTATT
131 TATGTGTATT
863096 TTATGTGTAAACTTTTAACATTTTAAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTAAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
863161 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
863226 CACAACGCGA
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.43
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTAAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
TATGTGTATT
Found at i:863221 original size:20 final size:20
Alignment explanation
Indices: 863196--863452 Score: 181
Period size: 20 Copynumber: 13.8 Consensus size: 20
863186 TTACACATTC
*
863196 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
863216 ATTTGACTATCACAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
863236 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
* *
863255 A----A-AATTGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
863270 ATTTGACTATCGTAACACGA
1 ATTTGACTATCGCAACGCGA
*
863290 ATATGACTATCGCAACGC-A
1 ATTTGACTATCGCAACGCGA
* *
863309 A----A-AATCGCAACGCAA
1 ATTTGACTATCGCAACGCGA
**
863324 ATTTGTTTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
863344 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
863364 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
* *
863384 ATTTGACTATTGCAACGAGA
1 ATTTGACTATCGCAACGCGA
* *
863404 A----A--ATCGCAAAGCAA
1 ATTTGACTATCGCAACGCGA
* *
863418 ATTTGACTATCACAACGAGA
1 ATTTGACTATCGCAACGCGA
*
863438 ATTTGATTATCGCAA
1 ATTTGACTATCGCAA
863453 TGGGTATTTA
Statistics
Matches: 181, Mismatches: 38, Indels: 36
0.71 0.15 0.14
Matches are distributed among these distances:
14 27 0.15
15 6 0.03
16 1 0.01
18 1 0.01
19 5 0.03
20 141 0.78
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:863291 original size:54 final size:54
Alignment explanation
Indices: 863204--863361 Score: 226
Period size: 54 Copynumber: 2.9 Consensus size: 54
863194 TCATTTGAAT
* * *
863204 ATCGCAACGCGAATTTGACTATCACAACGCGAATTTGATTATCGCAACTCAAAA
1 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCAAAA
* * * *
863258 ATTGCAACGCGAATTTGACTATCGTAACACGAATATGACTATCGCAACGCAAAA
1 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCAAAA
* **
863312 ATCGCAACGCAAATTTGTTTATCGCAACGCGAATTTGACTATCGCAACGC
1 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGC
863362 GAATTTGATT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (54 bp):
ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCAAAA
Found at i:863317 original size:14 final size:14
Alignment explanation
Indices: 863298--863324 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
863288 GAATATGACT
863298 ATCGCAACGCAAAA
1 ATCGCAACGCAAAA
863312 ATCGCAACGCAAA
1 ATCGCAACGCAAA
863325 TTTGTTTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.30, G:0.15, T:0.07
Consensus pattern (14 bp):
ATCGCAACGCAAAA
Found at i:863375 original size:94 final size:94
Alignment explanation
Indices: 863261--863452 Score: 251
Period size: 94 Copynumber: 2.0 Consensus size: 94
863251 CTCAAAAATT
* *
863261 GCAACGCGAATTTGACTATCGTAACACGAATATGACTATCGCAACGCA-AAAATCGCAACGCAAA
1 GCAACGCGAATTTGACTATCGCAACACGAATATGACTATCGCAACG-AGAAAATCGCAAAGCAAA
** * *
863325 TTTGTTTATCGCAACGCGAATTTGACTATC
65 TTTGACTATCACAACGAGAATTTGACTATC
* ** * * *
863355 GCAACGCGAATTTGATTATCGCAACGGGTATTTGACTATTGCAACGAGAAAATCGCAAAGCAAAT
1 GCAACGCGAATTTGACTATCGCAACACGAATATGACTATCGCAACGAGAAAATCGCAAAGCAAAT
*
863420 TTGACTATCACAACGAGAATTTGATTATC
66 TTGACTATCACAACGAGAATTTGACTATC
863449 GCAA
1 GCAA
863453 TGGGTATTTA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
93 1 0.01
94 83 0.99
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (94 bp):
GCAACGCGAATTTGACTATCGCAACACGAATATGACTATCGCAACGAGAAAATCGCAAAGCAAAT
TTGACTATCACAACGAGAATTTGACTATC
Found at i:863410 original size:74 final size:74
Alignment explanation
Indices: 863332--863514 Score: 267
Period size: 74 Copynumber: 2.5 Consensus size: 74
863322 AAATTTGTTT
* * **
863332 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGGGTATTTGACTATTGC
1 ATCGCAAAGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGGGTATTTAACTATCAC
863397 AACGAGAAA
66 AACGAGAAA
* * * *
863406 ATCGCAAAGCAAATTTGACTATCACAACGAGAATTTGATTATCGCAATGGGTATTTAACTATCAC
1 ATCGCAAAGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGGGTATTTAACTATCAC
863471 AACGAGAAA
66 AACGAGAAA
* * *
863480 ATCACAAAGCGTATTAGACTATCGCAACGCGAATT
1 ATCGCAAAGCGAATTTGACTATCGCAACGCGAATT
863515 GACTTTTGCG
Statistics
Matches: 95, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
74 95 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.25
Consensus pattern (74 bp):
ATCGCAAAGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGGGTATTTAACTATCAC
AACGAGAAA
Found at i:863467 original size:40 final size:40
Alignment explanation
Indices: 863323--863478 Score: 153
Period size: 40 Copynumber: 4.0 Consensus size: 40
863313 TCGCAACGCA
* * *
863323 AATTTGTTTATCGCAACGCGAATTTGACTATCGCAACGCG
1 AATTTGATTATCGCAACGCGAATTTGACTATCACAACGAG
* * **
863363 AATTTGATTATCGCAACGGGTATTTGACTATTGCAACGAG
1 AATTTGATTATCGCAACGCGAATTTGACTATCACAACGAG
* *
863403 AA----A--ATCGCAAAGCAAATTTGACTATCACAACGAG
1 AATTTGATTATCGCAACGCGAATTTGACTATCACAACGAG
* * * *
863437 AATTTGATTATCGCAATGGGTATTTAACTATCACAACGAG
1 AATTTGATTATCGCAACGCGAATTTGACTATCACAACGAG
863477 AA
1 AA
863479 AATCACAAAG
Statistics
Matches: 94, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
34 27 0.29
36 1 0.01
38 1 0.01
40 65 0.69
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (40 bp):
AATTTGATTATCGCAACGCGAATTTGACTATCACAACGAG
Found at i:863501 original size:34 final size:34
Alignment explanation
Indices: 863372--863508 Score: 96
Period size: 34 Copynumber: 3.9 Consensus size: 34
863362 GAATTTGATT
* * * **
863372 ATCGCAACGGGTATTTGACTATTGCAACGAGAAA
1 ATCGCAAAGCGTATTAGACTATCACAACGAGAAA
** *
863406 ATCGCAAAGCAAATTTGACTATCACAACGAGAATTTGA
1 ATCGCAAAGCGTATTAGACTATCACAACGAGAA----A
* *
863444 TTATCGCAATGGGTATTTA-ACTATCACAACGAGAAA
1 --ATCGCAAAGCGTA-TTAGACTATCACAACGAGAAA
* *
863480 ATCACAAAGCGTATTAGACTATCGCAACG
1 ATCGCAAAGCGTATTAGACTATCACAACG
863509 CGAATTGACT
Statistics
Matches: 80, Mismatches: 15, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
33 3 0.04
34 48 0.60
36 1 0.01
38 1 0.01
40 25 0.31
41 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (34 bp):
ATCGCAAAGCGTATTAGACTATCACAACGAGAAA
Found at i:863568 original size:20 final size:20
Alignment explanation
Indices: 863517--863570 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
863507 CGCGAATTGA
*
863517 CTTTTGCGTTGCGATTTTGG
1 CTTTAGCGTTGCGATTTTGG
* *
863537 CTTTCGCATTGCGATTTTGAG
1 CTTTAGCGTTGCGATTTTG-G
863558 -TTTAGCGTTGCGA
1 CTTTAGCGTTGCGA
863571 AAGTGTACCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.11, C:0.17, G:0.28, T:0.44
Consensus pattern (20 bp):
CTTTAGCGTTGCGATTTTGG
Found at i:863708 original size:29 final size:28
Alignment explanation
Indices: 863674--863728 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
863664 ATAAGAATTA
*
863674 TTTACACATCAATATTAAATAAATCAACT
1 TTTACAAATCAAT-TTAAATAAATCAACT
**
863703 TTTACAAATCAATTTTTATAAATCAA
1 TTTACAAATCAATTTAAATAAATCAA
863729 TTAAACAAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (28 bp):
TTTACAAATCAATTTAAATAAATCAACT
Found at i:863729 original size:14 final size:14
Alignment explanation
Indices: 863692--863730 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
863682 TCAATATTAA
*
863692 ATAAATCAACTTTT
1 ATAAATCAATTTTT
*
863706 ACAAATCAATTTTT
1 ATAAATCAATTTTT
863720 ATAAATCAATT
1 ATAAATCAATT
863731 AAACAAGCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAAATCAATTTTT
Found at i:865748 original size:20 final size:20
Alignment explanation
Indices: 865725--865793 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
865715 GAAACTTAAA
**
865725 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAATTTGACT
865745 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAATTTGACT
865765 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAATTTGACT
865785 ATCGCAACG
1 ATCGCAACG
865794 AGAGAATCGC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAATTTGACT
Found at i:866054 original size:18 final size:18
Alignment explanation
Indices: 866031--866080 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
866021 TTTACTAAGC
866031 AATCTAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
866049 AATCTAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
866067 AATCTAAGTGAAAT
1 AATCTAAGTGAAAT
866081 TACGAGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (18 bp):
AATCTAAGTGAAATGGTT
Found at i:867543 original size:22 final size:22
Alignment explanation
Indices: 867516--867558 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
867506 GAGATAGACG
867516 AATTTCGCCAGAGATGGGGACT
1 AATTTCGCCAGAGATGGGGACT
*
867538 AATTTCGTCAGAGATGGGGAC
1 AATTTCGCCAGAGATGGGGAC
867559 GGATGTCACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (22 bp):
AATTTCGCCAGAGATGGGGACT
Found at i:867764 original size:20 final size:20
Alignment explanation
Indices: 867739--867845 Score: 133
Period size: 20 Copynumber: 5.3 Consensus size: 20
867729 GAAAATTGCA
*
867739 TTGCGATAGTCAGCATCGCG
1 TTGCGATAGTCAGAATCGCG
*
867759 TTGCGATAATCAGAATCGCG
1 TTGCGATAGTCAGAATCGCG
* *
867779 TTGTGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
**
867799 TTGCGATAGTCAGAATCAAG
1 TTGCGATAGTCAGAATCGCG
* * *
867819 CTGCGATAGTCATAATCGCA
1 TTGCGATAGTCAGAATCGCG
867839 TTGCGAT
1 TTGCGAT
867846 TTACATATTC
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 73 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Done.