Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007930.1 Hibiscus syriacus cultivar Beakdansim tig00110338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2280901
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 12
Found at i:1240883 original size:104 final size:104
Alignment explanation
Indices: 1240703--1240908 Score: 385
Period size: 104 Copynumber: 2.0 Consensus size: 104
1240693 AATATTGACA
* * *
1240703 TTGCATGTTTGCTGGTCATCTGTTTGAGGAATTCTTAGAATCACCTTTGTCTCTTTTTCTGGATC
1 TTGCATGTTTGCTGGTCATCTGTCTGAGAAATTCTTAGAATCACCTTTGTCCCTTTTTCTGGATC
1240768 ATGCAGTTAGTTCTTCTGTGACATTTATGTGTTGCATCG
66 ATGCAGTTAGTTCTTCTGTGACATTTATGTGTTGCATCG
1240807 TTGCATGTTTGCTGGTCATCTGTCTGAGAAATTCTTAGAATCACCTTTGTCCCTTTTTCTGGATC
1 TTGCATGTTTGCTGGTCATCTGTCTGAGAAATTCTTAGAATCACCTTTGTCCCTTTTTCTGGATC
1240872 ATGCAGTTAGTTCTTCTGTGACATTTATGTGTTGCAT
66 ATGCAGTTAGTTCTTCTGTGACATTTATGTGTTGCAT
1240909 TGGGTGCATA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 99 1.00
ACGTcount: A:0.17, C:0.18, G:0.20, T:0.45
Consensus pattern (104 bp):
TTGCATGTTTGCTGGTCATCTGTCTGAGAAATTCTTAGAATCACCTTTGTCCCTTTTTCTGGATC
ATGCAGTTAGTTCTTCTGTGACATTTATGTGTTGCATCG
Found at i:1241812 original size:14 final size:14
Alignment explanation
Indices: 1241793--1241820 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1241783 CTAGCGTTAG
1241793 GCTGCATTCACTTT
1 GCTGCATTCACTTT
1241807 GCTGCATTCACTTT
1 GCTGCATTCACTTT
1241821 CAGACATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.14, T:0.43
Consensus pattern (14 bp):
GCTGCATTCACTTT
Found at i:1244796 original size:3 final size:3
Alignment explanation
Indices: 1244783--1244829 Score: 85
Period size: 3 Copynumber: 15.3 Consensus size: 3
1244773 ATGCTTGACT
1244783 CTC CATC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
1 CTC C-TC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
1244829 C
1 C
1244830 ATCTCTGACT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.02, C:0.66, G:0.00, T:0.32
Consensus pattern (3 bp):
CTC
Found at i:1246736 original size:25 final size:25
Alignment explanation
Indices: 1246702--1246888 Score: 288
Period size: 25 Copynumber: 7.4 Consensus size: 25
1246692 ATAATGCTCA
* **
1246702 TTATTCCACTAGTATTAAATAGTGG
1 TTATCCCACTAGTATTGGATAGTGG
1246727 TTATCCCACTAGTATTGGATAGTGG
1 TTATCCCACTAGTATTGGATAGTGG
1246752 TTATCCCACTAAGTATTGGAT-GATGG
1 TTATCCCACT-AGTATTGGATAG-TGG
1246778 TTATCCCACTAGTATTGGAT-GATGG
1 TTATCCCACTAGTATTGGATAG-TGG
*
1246803 TTATCCCACTAGAATTGGATAGTGG
1 TTATCCCACTAGTATTGGATAGTGG
1246828 TTATCCCACTAGTATTGGATAGTGG
1 TTATCCCACTAGTATTGGATAGTGG
*
1246853 TTATCCCACTAGTATTGGATAGTGT
1 TTATCCCACTAGTATTGGATAGTGG
1246878 TTATCCCACTA
1 TTATCCCACTA
1246889 TGTCTAATAG
Statistics
Matches: 153, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
25 129 0.84
26 24 0.16
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (25 bp):
TTATCCCACTAGTATTGGATAGTGG
Found at i:1252241 original size:25 final size:25
Alignment explanation
Indices: 1252212--1252372 Score: 238
Period size: 25 Copynumber: 6.4 Consensus size: 25
1252202 ATAATGCTCA
1252212 TTATCCCACTAGTATTGGAT-AGTGG
1 TTATCCCACTAGTATTGGATGA-TGG
1252237 TTATCCCACTAGTATTGGAT-AGTGG
1 TTATCCCACTAGTATTGGATGA-TGG
1252262 TTATCCCACTAGTATTGGATGATGG
1 TTATCCCACTAGTATTGGATGATGG
*
1252287 TTATCCCACTAGTATTGAATGATGG
1 TTATCCCACTAGTATTGGATGATGG
*
1252312 TTATCTCACTAGTATTGGAT-AGTGG
1 TTATCCCACTAGTATTGGATGA-TGG
*
1252337 TTATCCCACTAGTATTGAATGATGG
1 TTATCCCACTAGTATTGGATGATGG
*
1252362 TTATCCTACTA
1 TTATCCCACTA
1252373 TGTTTAATAG
Statistics
Matches: 127, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.01
25 124 0.98
26 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.37
Consensus pattern (25 bp):
TTATCCCACTAGTATTGGATGATGG
Found at i:1252270 original size:50 final size:50
Alignment explanation
Indices: 1252212--1252372 Score: 263
Period size: 50 Copynumber: 3.2 Consensus size: 50
1252202 ATAATGCTCA
*
1252212 TTATCCCACTAGTATTGGATAGTGGTTATCCCACTAGTATTGGAT-AGTGG
1 TTATCCCACTAGTATTGGATAGTGGTTATCCCACTAGTATTGAATGA-TGG
1252262 TTATCCCACTAGTATTGGAT-GATGGTTATCCCACTAGTATTGAATGATGG
1 TTATCCCACTAGTATTGGATAG-TGGTTATCCCACTAGTATTGAATGATGG
*
1252312 TTATCTCACTAGTATTGGATAGTGGTTATCCCACTAGTATTGAATGATGG
1 TTATCCCACTAGTATTGGATAGTGGTTATCCCACTAGTATTGAATGATGG
*
1252362 TTATCCTACTA
1 TTATCCCACTA
1252373 TGTTTAATAG
Statistics
Matches: 104, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
49 1 0.01
50 101 0.97
51 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.37
Consensus pattern (50 bp):
TTATCCCACTAGTATTGGATAGTGGTTATCCCACTAGTATTGAATGATGG
Found at i:1252335 original size:75 final size:75
Alignment explanation
Indices: 1252212--1252372 Score: 270
Period size: 75 Copynumber: 2.1 Consensus size: 75
1252202 ATAATGCTCA
*
1252212 TTATCCCACTAGTATTGGATAGTGGTTATCCCACTAGTATTGGATAGTGGTTATCCCACTAGTAT
1 TTATCCCACTAGTATTGAATAGTGGTTATCCCACTAGTATTGGATAGTGGTTATCCCACTAGTAT
*
1252277 TGGATGATGG
66 TGAATGATGG
*
1252287 TTATCCCACTAGTATTGAAT-GATGGTTATCTCACTAGTATTGGATAGTGGTTATCCCACTAGTA
1 TTATCCCACTAGTATTGAATAG-TGGTTATCCCACTAGTATTGGATAGTGGTTATCCCACTAGTA
1252351 TTGAATGATGG
65 TTGAATGATGG
*
1252362 TTATCCTACTA
1 TTATCCCACTA
1252373 TGTTTAATAG
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
74 1 0.01
75 80 0.99
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.37
Consensus pattern (75 bp):
TTATCCCACTAGTATTGAATAGTGGTTATCCCACTAGTATTGGATAGTGGTTATCCCACTAGTAT
TGAATGATGG
Found at i:1265978 original size:1 final size:1
Alignment explanation
Indices: 1265972--1266000 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
1265962 TGAAACAGAC
1265972 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1266001 TCACCCGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1282213 original size:19 final size:19
Alignment explanation
Indices: 1282189--1282231 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
1282179 TAAAGGAGCT
*
1282189 AATTTTGAT-ATTATGCCTA
1 AATTTT-ATAATTATCCCTA
*
1282208 AATTTTATAATTATCCCTT
1 AATTTTATAATTATCCCTA
1282227 AATTT
1 AATTT
1282232 GACATAATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.51
Consensus pattern (19 bp):
AATTTTATAATTATCCCTA
Found at i:1283789 original size:24 final size:23
Alignment explanation
Indices: 1283745--1283807 Score: 58
Period size: 25 Copynumber: 2.7 Consensus size: 23
1283735 CCGTCCCCAA
* *
1283745 AAATTTTA-AATTTCATC-TTTT
1 AAATTTTATAAATTCACCTTTTT
1283766 ATAATTTTATAAATTCACCTTTTTT
1 A-AATTTTATAAATTCACC-TTTTT
*
1283791 AAATTTTTTAAAATTCA
1 AAATTTTAT-AAATTCA
1283808 ACCACTAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 1 0.03
22 7 0.21
23 7 0.21
24 7 0.21
25 12 0.35
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (23 bp):
AAATTTTATAAATTCACCTTTTT
Found at i:1291576 original size:63 final size:64
Alignment explanation
Indices: 1291477--1291604 Score: 240
Period size: 63 Copynumber: 2.0 Consensus size: 64
1291467 CATTTAGTAC
1291477 ATAATTTATTTAAAATGTTTTATCCAAATGTTGATTCAGTGATCGTGAGG-AAAAAAAAGTTTA
1 ATAATTTATTTAAAATGTTTTATCCAAATGTTGATTCAGTGATCGTGAGGAAAAAAAAAGTTTA
*
1291540 ATAATTTATTTAAAATGTTTTATCCCAATGTTGATTCAGTGATCGTGAGGAAAAAAAAAGTTTA
1 ATAATTTATTTAAAATGTTTTATCCAAATGTTGATTCAGTGATCGTGAGGAAAAAAAAAGTTTA
1291604 A
1 A
1291605 AATATAAAAT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
63 49 0.78
64 14 0.22
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (64 bp):
ATAATTTATTTAAAATGTTTTATCCAAATGTTGATTCAGTGATCGTGAGGAAAAAAAAAGTTTA
Found at i:1297751 original size:20 final size:20
Alignment explanation
Indices: 1297726--1297765 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
1297716 TTGAAAGACT
1297726 TAGTGCATCGGTACACTGGG
1 TAGTGCATCGGTACACTGGG
1297746 TAGTGCATCGGTACACTGGG
1 TAGTGCATCGGTACACTGGG
1297766 GTGTGGACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.35, T:0.25
Consensus pattern (20 bp):
TAGTGCATCGGTACACTGGG
Found at i:1297861 original size:64 final size:65
Alignment explanation
Indices: 1297790--1297923 Score: 207
Period size: 65 Copynumber: 2.1 Consensus size: 65
1297780 ACAAATCTGC
* *
1297790 TTCGATGTTTCAAAATAGCCA-GGGTGCATCGATGCATGTCTTGTGCATCGGTGCACTGAATGCA
1 TTCGATGTTTCAAAATAGCCAGGGGTGCATCGATGCATGGCTTGTGCATCGGTGCACTAAATGCA
*** *
1297854 TTCGATGTTTCAAAATATTTAGGGGTGCATCGATGGATGGCTTGTGCATCGGTGCACTAAATGCA
1 TTCGATGTTTCAAAATAGCCAGGGGTGCATCGATGCATGGCTTGTGCATCGGTGCACTAAATGCA
1297919 TTCGA
1 TTCGA
1297924 AATTCAATTT
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
64 18 0.29
65 45 0.71
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (65 bp):
TTCGATGTTTCAAAATAGCCAGGGGTGCATCGATGCATGGCTTGTGCATCGGTGCACTAAATGCA
Found at i:1303989 original size:21 final size:20
Alignment explanation
Indices: 1303944--1304003 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
1303934 TATTTGGCAG
1303944 AGGGAATCGATACCCCCATA
1 AGGGAATCGATACCCCCATA
* *
1303964 AGGGAACCGATTCCCCCTATA
1 AGGGAATCGATACCCCC-ATA
*
1303985 GGGGAATCGATACCCCCAT
1 AGGGAATCGATACCCCCAT
1304004 GGGGTTCTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 17 0.50
21 17 0.50
ACGTcount: A:0.30, C:0.32, G:0.22, T:0.17
Consensus pattern (20 bp):
AGGGAATCGATACCCCCATA
Found at i:1307916 original size:22 final size:21
Alignment explanation
Indices: 1307886--1307951 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 21
1307876 TAGCATTCGA
1307886 TACTGTTCACAGTATTGTTCAT
1 TACTGTTCAC-GTATTGTTCAT
* *
1307908 TACTATTCATCGTATTGTACAT
1 TACTGTTCA-CGTATTGTTCAT
*
1307930 TATTGTTCACGTTATTGTTCAT
1 TACTGTTCACG-TATTGTTCAT
1307952 ACCGTATAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.05
22 34 0.92
23 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.48
Consensus pattern (21 bp):
TACTGTTCACGTATTGTTCAT
Found at i:1309818 original size:20 final size:20
Alignment explanation
Indices: 1309793--1309833 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
1309783 TGCATAATTA
1309793 TGCATGCAGTCCATGTACTC
1 TGCATGCAGTCCATGTACTC
1309813 TGCATGCAGTCCATGTACTC
1 TGCATGCAGTCCATGTACTC
1309833 T
1 T
1309834 TTGGACTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.32
Consensus pattern (20 bp):
TGCATGCAGTCCATGTACTC
Found at i:1315210 original size:21 final size:21
Alignment explanation
Indices: 1315184--1315223 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1315174 CAGAACCCCA
*
1315184 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
1315205 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
1315224 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:1315258 original size:20 final size:21
Alignment explanation
Indices: 1315204--1315266 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
1315194 GATTCCCCTG
1315204 TGGGGGGAATCGGTTCCCCTTCAA
1 TGGGGGG-ATCGGTT-CCC-TCAA
* *
1315228 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
1315248 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
1315267 CGCACAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:1319116 original size:22 final size:21
Alignment explanation
Indices: 1319074--1319113 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1319064 GAGTTTGTTT
*
1319074 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
1319095 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
1319114 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:1337287 original size:3 final size:3
Alignment explanation
Indices: 1337279--1337304 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1337269 GAAAGTAAGC
1337279 AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AG
1337305 GGATTTAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:1338297 original size:16 final size:16
Alignment explanation
Indices: 1338276--1338309 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
1338266 TCTATGTTCT
1338276 TCTTTCAAATTAGTTG
1 TCTTTCAAATTAGTTG
1338292 TCTTTCAAATTAGTTG
1 TCTTTCAAATTAGTTG
1338308 TC
1 TC
1338310 ATGGCTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.50
Consensus pattern (16 bp):
TCTTTCAAATTAGTTG
Found at i:1339289 original size:29 final size:29
Alignment explanation
Indices: 1339247--1339302 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
1339237 AGTTCATGGG
1339247 AATAGATTGTAGCCTAGTGTTTTGAAACT
1 AATAGATTGTAGCCTAGTGTTTTGAAACT
1339276 AATAGATTGTAGCCTAGTGTTTTGAAA
1 AATAGATTGTAGCCTAGTGTTTTGAAA
1339303 GCACACAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (29 bp):
AATAGATTGTAGCCTAGTGTTTTGAAACT
Found at i:1340376 original size:3 final size:3
Alignment explanation
Indices: 1340368--1340429 Score: 79
Period size: 3 Copynumber: 20.0 Consensus size: 3
1340358 AAATTTAAAT
** *
1340368 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1340416 TTTA TTA TTTA TTA
1 -TTA TTA -TTA TTA
1340430 AATATTACAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
3 46 0.90
4 5 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:1342023 original size:119 final size:119
Alignment explanation
Indices: 1341885--1342122 Score: 293
Period size: 120 Copynumber: 2.0 Consensus size: 119
1341875 ATTTTAATCC
* * * * *
1341885 TGTTTTAATATTTATTTATTTTTCAATAT-TAAG-AAAGGGCAGTCTTAAAACAACTGGATGTCC
1 TGTTTTAATAATTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCC
* * *
1341948 ATTTTCTGATATTTTTAAATAAATAAATATCCTATTTTATAAAT-TATATATTAAT
66 -TTTTCTGATATGTCTAAATAAATAAATATCCTA-TTTATAAATATATAAATTAAT
* * ** *
1342003 TGTTTTAATTAATTATTTATTTTTTAATATCGAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGTC
1 TGTTTTAA-TAATTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTC
**
1342068 CTTTTCTGATATGTCTAAATAAATAAATATTTTATTTATAAATATATAAATTAAT
65 CTTTTCTGATATGTCTAAATAAATAAATATCCTATTTATAAATATATAAATTAAT
1342123 ATTTTTTTCA
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
118 8 0.08
119 28 0.28
120 42 0.42
121 23 0.23
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (119 bp):
TGTTTTAATAATTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCC
TTTTCTGATATGTCTAAATAAATAAATATCCTATTTATAAATATATAAATTAAT
Found at i:1342116 original size:27 final size:27
Alignment explanation
Indices: 1342086--1342140 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
1342076 ATATGTCTAA
1342086 ATAAATAAATATTTTATTT-ATAAATAT
1 ATAAATAAATATTTT-TTTCATAAATAT
* *
1342113 ATAAATTAATATTTTTTTCATAATTAT
1 ATAAATAAATATTTTTTTCATAAATAT
1342140 A
1 A
1342141 ATTTTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 22 0.88
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (27 bp):
ATAAATAAATATTTTTTTCATAAATAT
Found at i:1342199 original size:47 final size:47
Alignment explanation
Indices: 1342112--1342202 Score: 112
Period size: 47 Copynumber: 1.9 Consensus size: 47
1342102 TTTATAAATA
* * * *
1342112 TATAAATTAATATTTTTTTCATAATTATAATTTTGAAATAATAGGAT
1 TATAAATTAATATATTTTTCAAAATTATAAATTTCAAATAATAGGAT
* *
1342159 TATAAATTAAATATATTTTTGAAAATT-TAAATTTCTAATAATAG
1 TATAAATT-AATATATTTTTCAAAATTATAAATTTCAAATAATAG
1342203 AGACAATTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
47 22 0.59
48 15 0.41
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.47
Consensus pattern (47 bp):
TATAAATTAATATATTTTTCAAAATTATAAATTTCAAATAATAGGAT
Found at i:1342650 original size:3 final size:3
Alignment explanation
Indices: 1342637--1342716 Score: 60
Period size: 3 Copynumber: 25.7 Consensus size: 3
1342627 TTTCAAATTT
*
1342637 TTA TTA TTTA TTA TTT TTA TATA TTA TTA TT- TTA TTA TTA TT- TTA
1 TTA TTA -TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
1342682 TTTA TTTA TT- TTA TTCAA TTA TTAA TTA TT- TTA TT
1 -TTA -TTA TTA TTA TT--A TTA TT-A TTA TTA TTA TT
1342717 TGTTTATTAG
Statistics
Matches: 65, Mismatches: 2, Indels: 20
0.75 0.02 0.23
Matches are distributed among these distances:
2 8 0.12
3 38 0.58
4 16 0.25
5 3 0.05
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:1342673 original size:8 final size:8
Alignment explanation
Indices: 1342635--1342725 Score: 66
Period size: 8 Copynumber: 11.0 Consensus size: 8
1342625 TCTTTCAAAT
1342635 TTTTATTA
1 TTTTATTA
1342643 -TTTATTA
1 TTTTATTA
1342650 TTTT-TATA
1 TTTTAT-TA
*
1342658 TATTATTA
1 TTTTATTA
1342666 TTTTATTA
1 TTTTATTA
1342674 TTATT-TTA
1 TT-TTATTA
1342682 -TTTATTTA
1 TTTTA-TTA
1342690 TTTTATTCAA
1 TTTTATT--A
1342700 TTATTAATTA
1 TT-TT-ATTA
1342710 TTTTATT-
1 TTTTATTA
1342717 TGTTTATTA
1 T-TTTATTA
1342726 GAGGTTTGAA
Statistics
Matches: 68, Mismatches: 2, Indels: 25
0.72 0.02 0.26
Matches are distributed among these distances:
6 2 0.03
7 10 0.15
8 36 0.53
9 9 0.13
10 6 0.09
11 2 0.03
12 3 0.04
ACGTcount: A:0.27, C:0.01, G:0.01, T:0.70
Consensus pattern (8 bp):
TTTTATTA
Found at i:1342675 original size:24 final size:23
Alignment explanation
Indices: 1342636--1342696 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 23
1342626 CTTTCAAATT
1342636 TTTATTA-TTTATTATT-TTTATA
1 TTTATTATTTTATTATTATTT-TA
1342658 TATTATTATTTTATTATTATTTTA
1 T-TTATTATTTTATTATTATTTTA
1342682 TTTATTTATTTTATT
1 TTTA-TTATTTTATT
1342697 CAATTATTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
22 1 0.03
23 9 0.26
24 22 0.63
25 3 0.09
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (23 bp):
TTTATTATTTTATTATTATTTTA
Found at i:1342694 original size:13 final size:12
Alignment explanation
Indices: 1342636--1342696 Score: 67
Period size: 13 Copynumber: 5.2 Consensus size: 12
1342626 CTTTCAAATT
1342636 TTTATTA-TTTA
1 TTTATTATTTTA
1342647 -TTATT-TTTATA
1 TTTATTATTT-TA
1342658 TATTATTATTTTA
1 T-TTATTATTTTA
1342671 -TTATTATTTTA
1 TTTATTATTTTA
1342682 TTTATTTATTTTA
1 TTTA-TTATTTTA
1342695 TT
1 TT
1342697 CAATTATTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
10 7 0.16
11 13 0.30
12 3 0.07
13 17 0.40
14 3 0.07
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTATTATTTTA
Found at i:1342703 original size:13 final size:12
Alignment explanation
Indices: 1342658--1342704 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 12
1342648 TATTTTTATA
1342658 TATT-ATTATTT
1 TATTAATTATTT
1342669 TATT-ATTATTT
1 TATTAATTATTT
*
1342680 TATTTATTTATTT
1 TA-TTAATTATTT
1342693 TATTCAATTATT
1 TATT-AATTATT
1342705 AATTATTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
11 13 0.42
12 4 0.13
13 14 0.45
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (12 bp):
TATTAATTATTT
Found at i:1347272 original size:2 final size:2
Alignment explanation
Indices: 1347265--1347308 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
1347255 ATCCTTTTAA
1347265 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1347307 AT
1 AT
1347309 CATTTGTTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1347635 original size:20 final size:18
Alignment explanation
Indices: 1347613--1347671 Score: 70
Period size: 17 Copynumber: 3.4 Consensus size: 18
1347603 AAGAAAGAAG
1347613 AAGAAG-AAAAAAACAAA
1 AAGAAGAAAAAAAACAAA
1347630 AAGAAGAAAAAAAACAAA
1 AAGAAGAAAAAAAACAAA
* **
1347648 AA-AACAAAAAGGA-AAA
1 AAGAAGAAAAAAAACAAA
1347664 AAGAAGAA
1 AAGAAGAA
1347672 GGAAAATTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
16 5 0.14
17 18 0.50
18 13 0.36
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AAGAAGAAAAAAAACAAA
Found at i:1347648 original size:8 final size:8
Alignment explanation
Indices: 1347619--1347657 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
1347609 GAAGAAGAAG
1347619 AAAAAAAC
1 AAAAAAAC
*
1347627 AAAAAGAAGA
1 AAAAA-AA-C
1347637 AAAAAAAC
1 AAAAAAAC
1347645 AAAAAAAC
1 AAAAAAAC
1347653 AAAAA
1 AAAAA
1347658 GGAAAAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 18 0.67
9 4 0.15
10 5 0.19
ACGTcount: A:0.87, C:0.08, G:0.05, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:1347648 original size:23 final size:21
Alignment explanation
Indices: 1347606--1347665 Score: 57
Period size: 23 Copynumber: 2.7 Consensus size: 21
1347596 TCCAGTAAAG
*
1347606 AAAGAAGAAGAAGAAAAAAACAA
1 AAAGAAGAA-AA-AAAAAAAAAA
1347629 AAAGAAGAAAAAAAACAAAAAA
1 AAAGAAGAAAAAAAA-AAAAAA
* *
1347651 ACAAAAAGGAAAAAA
1 A-AAGAAGAAAAAAA
1347666 GAAGAAGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.12
22 8 0.25
23 20 0.62
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (21 bp):
AAAGAAGAAAAAAAAAAAAAA
Found at i:1347663 original size:14 final size:14
Alignment explanation
Indices: 1347620--1347677 Score: 57
Period size: 14 Copynumber: 4.3 Consensus size: 14
1347610 AAGAAGAAGA
1347620 AAAAAACAAAAA-G
1 AAAAAACAAAAAGG
* **
1347633 AAGAAA-AAAAACA
1 AAAAAACAAAAAGG
1347646 AAAAAACAAAAAGG
1 AAAAAACAAAAAGG
* *
1347660 AAAAAAGAAGAAGG
1 AAAAAACAAAAAGG
1347674 AAAA
1 AAAA
1347678 TTGAATCAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
12 5 0.14
13 10 0.28
14 21 0.58
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAAAACAAAAAGG
Found at i:1347677 original size:26 final size:26
Alignment explanation
Indices: 1347613--1347671 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
1347603 AAGAAAGAAG
1347613 AAGAAGAAAAAAACAAAAAGAAGAAAA
1 AAGAAGAAAAAAACAAAAAG-AGAAAA
*
1347640 AA-AACAAAAAAACAAAAAG-GAAAA
1 AAGAAGAAAAAAACAAAAAGAGAAAA
1347664 AAGAAGAA
1 AAGAAGAA
1347672 GGAAAATTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 7 0.24
25 4 0.14
26 16 0.55
27 2 0.07
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (26 bp):
AAGAAGAAAAAAACAAAAAGAGAAAA
Found at i:1350145 original size:114 final size:114
Alignment explanation
Indices: 1349944--1350167 Score: 394
Period size: 114 Copynumber: 2.0 Consensus size: 114
1349934 GTGCCACGTT
*
1349944 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTTTAGAAGTGTTCTTTGAGTTATCTGATCTG
1 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTG
* *
1350009 GTTTGGTATGAACCCCAAAACCAATCATTAGATTTGAAAGATGAATTTG
66 GTTTGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTG
*
1350058 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTG
* *
1350123 GTTTGGTAGGAACCCCAGAACCAATCATTGGAATTGAAAGATGAA
66 GTTTGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAA
1350168 CTGCATGATC
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
114 104 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (114 bp):
CTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTG
GTTTGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATTTG
Found at i:1351425 original size:76 final size:75
Alignment explanation
Indices: 1351277--1351447 Score: 182
Period size: 76 Copynumber: 2.3 Consensus size: 75
1351267 AACAAGAAGT
* * * * *
1351277 AAATGTTGGGGCATGCTGAAAACCCTTTTCAATCATAATCAGGAATGTTGATGTATCCTGAATGT
1 AAATG-TGGGGCATGCTGAAAACCCTTTTCAATCAGAATCAAGAAGGTTAATGTATCCTGAACGT
**
1351342 TTATATCAGCA
65 ACATATCAGCA
* * * **
1351353 AAATGCTGGGGCATGCTGAAAGCCTTTTTCAATCAGAATGAAGAAGGTTAATGTATTTTGAACGT
1 AAATG-TGGGGCATGCTGAAAACCCTTTTCAATCAGAATCAAGAAGGTTAATGTATCCTGAACGT
*
1351418 ACGTATCAGCA
65 ACATATCAGCA
*
1351429 ATTAT-TGGGGCATGCTGAA
1 A-AATGTGGGGCATGCTGAA
1351448 GGCCCACATC
Statistics
Matches: 79, Mismatches: 15, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
75 14 0.18
76 63 0.80
77 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (75 bp):
AAATGTGGGGCATGCTGAAAACCCTTTTCAATCAGAATCAAGAAGGTTAATGTATCCTGAACGTA
CATATCAGCA
Found at i:1352803 original size:22 final size:22
Alignment explanation
Indices: 1352777--1352853 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
1352767 ATCTACACTC
1352777 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
1352799 TTCAAAGATGATAGATTCACTT
1 TTCAAAGATGATAGATTCTCTT
* *
1352821 TTTAAAGATGATATATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
1352843 TTCAAAGATGA
1 TTCAAAGATGA
1352854 AAGCTTTATT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:1353697 original size:167 final size:168
Alignment explanation
Indices: 1353368--1353697 Score: 540
Period size: 167 Copynumber: 2.0 Consensus size: 168
1353358 AAAATGAGCA
1353368 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAAAATAATGAGAAAAC
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTT--AAAAAAAATAATGAGAAAAC
**
1353433 GATTTCCATAAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATT
64 GATTTCCATAAGTTTCTCATTCAATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATT
*
1353498 TCCTTAGTTTTTTTTACTTAGTAAATTATTTCCAATAGCC
129 TCCTTAGTTTTTTTTACTTAGTAAACTATTTCCAATAGCC
**
1353538 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTT-TGAAAAATAATGAGAAAACGA
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTAAAAAAAATAATGAGAAAACGA
*
1353602 TTTCCAT-AGTTTCTCATTCAATCTTTTCTAAAAATTAAATTTGTTGAAAAGTAAGAAAACGATT
66 TTTCCATAAGTTTCTCATTCAATCTTTTCT-AAAATGAAA-TTGTTGAAAAGTAAGAAAACGATT
*
1353666 TCCTTAG-TTTTTTTACTTATTAAACTATTTCC
129 TCCTTAGTTTTTTTTACTTAGTAAACTATTTCC
1353698 TACATCTGTA
Statistics
Matches: 151, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
166 20 0.13
167 57 0.38
168 31 0.21
170 43 0.28
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (168 bp):
TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTAAAAAAAATAATGAGAAAACGA
TTTCCATAAGTTTCTCATTCAATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTC
CTTAGTTTTTTTTACTTAGTAAACTATTTCCAATAGCC
Found at i:1353799 original size:76 final size:76
Alignment explanation
Indices: 1353700--1354427 Score: 1287
Period size: 76 Copynumber: 9.6 Consensus size: 76
1353690 CTATTTCCTA
* *
1353700 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTATCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1353765 AGCCTTAGGGT
66 AGCCTTAGGGT
1353776 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1353841 AACCTTAGGGT
66 AGCCTTAGGGT
1353852 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1353917 AACCTTAGGGT
66 AGCCTTAGGGT
1353928 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1353993 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1354004 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1354069 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
1354080 CATCTGTAAGTCCTACAGTGCATGATGTTACCAAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCC-AAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1354145 AAGCCTTAGGGT
65 AAGCCTTAGGGT
* *
1354157 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCTTTTGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1354222 AACCTTAGGGT
66 AGCCTTAGGGT
* * *
1354233 CATCTGTAAGTCCTGCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTCCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1354298 AACCTTAGGGT
66 AGCCTTAGGGT
1354309 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1354374 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
1354385 CATCTATAAGTCCTTCAGTGCATGATGTTTTCAAAAA-CCTTCG
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCG
1354428 AGTCATCTTA
Statistics
Matches: 626, Mismatches: 25, Indels: 3
0.96 0.04 0.00
Matches are distributed among these distances:
75 6 0.01
76 546 0.87
77 74 0.12
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:1354254 original size:305 final size:304
Alignment explanation
Indices: 1353700--1354429 Score: 1318
Period size: 305 Copynumber: 2.4 Consensus size: 304
1353690 CTATTTCCTA
*
1353700 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTATCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1353765 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
66 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTT
1353830 GATGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC
131 GATGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC
1353895 GGGAGCTTTTTGATGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCC
196 GGGAGCTTTTTGATGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCC
* *
1353960 AAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGT
261 AAAAAGCCTTCGGGAGCTTTTTGATGTTTCCAAAACCTTAGGGT
1354004 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1354069 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTACCAAAAAAGCCTTCGAGAGCTTTT
66 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCC-AAAAAGCCTTCGAGAGCTTTT
* *
1354134 TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCTTT
130 TGATGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTT
* * *
1354199 TGGGAGCTTTTTGATGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTT
195 CGGGAGCTTTTTGATGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTC
1354264 CAAAAAGCCTTCGGGAGCTTTTTGATGTTTCCAAAACCTTAGGGT
260 CAAAAAGCCTTCGGGAGCTTTTTGATGTTTCCAAAACCTTAGGGT
*
1354309 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* * *
1354374 AGCCTTAGGGTCATCTATAAGTCCTTCAGTGCATGATGTTTTCAAAAA-CCTTCGAG
66 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGAG
1354430 TCATCTTAAG
Statistics
Matches: 410, Mismatches: 15, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
303 8 0.02
304 111 0.27
305 291 0.71
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (304 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTT
GATGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC
GGGAGCTTTTTGATGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCC
AAAAAGCCTTCGGGAGCTTTTTGATGTTTCCAAAACCTTAGGGT
Found at i:1354415 original size:45 final size:44
Alignment explanation
Indices: 1354362--1354508 Score: 222
Period size: 45 Copynumber: 3.3 Consensus size: 44
1354352 GGGAGCTTTT
* *
1354362 TGATGTTTTCAAAGCCTTAGGGTCATCTATAAGTCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCT-TAAGTCCTTCAGTGCA
*
1354407 TGATGTTTTCAAAAACCTTCGAGTCATCTTAAGTCCTTCAGTGCA
1 TGATGTTTTC-AAAACCTTCGGGTCATCTTAAGTCCTTCAGTGCA
* *
1354452 TGATGTTTTCAAAACCTTCGGGTCATTTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCT-TAAGTCCTTCAGTGCA
1354497 TGATGTTTTCAA
1 TGATGTTTTCAA
1354509 CATTTCCATC
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
44 16 0.17
45 63 0.67
46 15 0.16
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (44 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTTAAGTCCTTCAGTGCA
Found at i:1354650 original size:3 final size:3
Alignment explanation
Indices: 1354642--1354709 Score: 100
Period size: 3 Copynumber: 22.0 Consensus size: 3
1354632 AAATTTAAAT
**
1354642 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1354690 TTA TTA TATA TTA TTTA TTA
1 TTA TTA T-TA TTA -TTA TTA
1354710 AATATTACAA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
3 53 0.90
4 6 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:1356287 original size:20 final size:19
Alignment explanation
Indices: 1356262--1356303 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
1356252 ATATTTTATA
1356262 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
1356282 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
1356301 AAT
1 AAT
1356304 ATCGAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:1356295 original size:119 final size:119
Alignment explanation
Indices: 1356158--1356395 Score: 302
Period size: 120 Copynumber: 2.0 Consensus size: 119
1356148 ATTTTAATCC
* * * *
1356158 TGTTTTAATATTTATTTATTTTTCAATAT-TAAG-AAAGGGTAGTCTTAAAACAACTGGATGTCC
1 TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGTAGTCTTAAAACAACTAGAAGTCC
* * *
1356221 ATTTTCTGATATTTTTAAATAAATAAATATCATATTTTATAAAT-TATATATTAAT
66 -TTTTCTAATATTTCTAAATAAATAAATATCATA-TTTATAAATATATAAATTAAT
* * ** *
1356276 TGTTTTAATTATTTATTTATTTTTTAATATCGAAGAAAAGAGTTGTCTTAAGGCACCTAGAAGTC
1 TGTTTTAA-TATTTATTTATTTTTCAATATCGAAGAAAAGAGTAGTCTTAAAACAACTAGAAGTC
**
1356341 CTTTTCTAATATTTCTAAATAAATAAATATTTTATTTATAAATATATAAATTAAT
65 CTTTTCTAATATTTCTAAATAAATAAATATCATATTTATAAATATATAAATTAAT
1356396 ATTTTTTTCA
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
118 8 0.08
119 29 0.28
120 42 0.41
121 23 0.23
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.46
Consensus pattern (119 bp):
TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGTAGTCTTAAAACAACTAGAAGTCC
TTTTCTAATATTTCTAAATAAATAAATATCATATTTATAAATATATAAATTAAT
Found at i:1356389 original size:27 final size:27
Alignment explanation
Indices: 1356359--1356413 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
1356349 ATATTTCTAA
1356359 ATAAATAAATATTTTATTT-ATAAATAT
1 ATAAATAAATATTTT-TTTCATAAATAT
*
1356386 ATAAATTAATATTTTTTTCATAAATAT
1 ATAAATAAATATTTTTTTCATAAATAT
1356413 A
1 A
1356414 ATTTTGAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (27 bp):
ATAAATAAATATTTTTTTCATAAATAT
Found at i:1356472 original size:47 final size:47
Alignment explanation
Indices: 1356385--1356475 Score: 112
Period size: 47 Copynumber: 1.9 Consensus size: 47
1356375 TTTATAAATA
* * *
1356385 TATAAATTAATATTTTTTTCATAAATATAATTTTGAAATAATAGGAT
1 TATAAATTAATATATTTTTCATAAATATAAATTTCAAATAATAGGAT
* * *
1356432 TATAAATTAAATATATTTTTGA-AAATTTAAATTTCTAATAATAG
1 TATAAATT-AATATATTTTTCATAAATATAAATTTCAAATAATAG
1356476 AGACAATTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
47 26 0.70
48 11 0.30
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (47 bp):
TATAAATTAATATATTTTTCATAAATATAAATTTCAAATAATAGGAT
Found at i:1361303 original size:10 final size:9
Alignment explanation
Indices: 1361269--1361305 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
1361259 TGTTATTCTC
1361269 TCTTTTTTT
1 TCTTTTTTT
*
1361278 CCCTTTTTTT
1 -TCTTTTTTT
1361288 TCTTTTTTT
1 TCTTTTTTT
1361297 TCTTTTTTT
1 TCTTTTTTT
1361306 GAAATTGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:1368201 original size:26 final size:25
Alignment explanation
Indices: 1368167--1368216 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
1368157 AATATACTCG
*
1368167 TAAGGTTTTAAACTATAAAAATATAA
1 TAAGATTTTAAACTAT-AAAATATAA
1368193 TAAGATTTTAAACTATAAAATATA
1 TAAGATTTTAAACTATAAAATATA
1368217 CCTCATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (25 bp):
TAAGATTTTAAACTATAAAATATAA
Found at i:1368239 original size:2 final size:2
Alignment explanation
Indices: 1368232--1368260 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1368222 TAATATAGAT
1368232 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1368261 GATTTTAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1374817 original size:52 final size:49
Alignment explanation
Indices: 1374714--1374819 Score: 117
Period size: 52 Copynumber: 2.1 Consensus size: 49
1374704 AGTGATAATG
*
1374714 TGATATGAGACTATGAGAATATTACATGAGATATGTGATTATAAATGAAA
1 TGATATGAGACTATGAGAATATTACATGAGACATGTGATTAT-AATGAAA
* *
1374764 TGATATGAG-CTATGTGATATATGTGACATGTGACATGTGAATTAT-ATGAAAA
1 TGATATGAGACTATGAGA-ATAT-T-ACATGAGACATGTG-ATTATAATG-AAA
1374816 TGAT
1 TGAT
1374820 CTACGTGTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
49 7 0.15
50 13 0.27
51 4 0.08
52 19 0.40
53 5 0.10
ACGTcount: A:0.40, C:0.05, G:0.22, T:0.34
Consensus pattern (49 bp):
TGATATGAGACTATGAGAATATTACATGAGACATGTGATTATAATGAAA
Found at i:1393821 original size:21 final size:21
Alignment explanation
Indices: 1393796--1393835 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1393786 AAAAAATTAT
*
1393796 CTAAAATATTATTATTTTTAC
1 CTAAAATATTAATATTTTTAC
1393817 CTAAAATATTAATATTTTT
1 CTAAAATATTAATATTTTT
1393836 TAATATTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (21 bp):
CTAAAATATTAATATTTTTAC
Found at i:1393948 original size:27 final size:27
Alignment explanation
Indices: 1393896--1393948 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
1393886 TCAGATATGT
*
1393896 TAATAAAATCGATAAAATATTCAATAA
1 TAATAAAATCGATAAAATAATCAATAA
1393923 TAATAAAATCGATAAAAATAAT-AATA
1 TAATAAAATCGAT-AAAATAATCAATA
1393949 TTCTTGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (27 bp):
TAATAAAATCGATAAAATAATCAATAA
Found at i:1397222 original size:15 final size:15
Alignment explanation
Indices: 1397202--1397231 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1397192 CAATATTATG
1397202 TATATAATAAAATAA
1 TATATAATAAAATAA
*
1397217 TATATAATAATATAA
1 TATATAATAAAATAA
1397232 GTAAAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TATATAATAAAATAA
Found at i:1397862 original size:15 final size:15
Alignment explanation
Indices: 1397842--1397871 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1397832 CAATATTATG
1397842 TATATAATAAAATAA
1 TATATAATAAAATAA
*
1397857 TATATAATAATATAA
1 TATATAATAAAATAA
1397872 GTAAAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TATATAATAAAATAA
Found at i:1398165 original size:640 final size:640
Alignment explanation
Indices: 1396945--1398229 Score: 2570
Period size: 640 Copynumber: 2.0 Consensus size: 640
1396935 GTTCGGGGAA
1396945 TAAACATGTCAAAGAATTAAAATATCAGATCTAAAAGATTTAAAAGTCTAAGGTTATTTTTAAAC
1 TAAACATGTCAAAGAATTAAAATATCAGATCTAAAAGATTTAAAAGTCTAAGGTTATTTTTAAAC
1397010 AGAATAAAATATTATACATTGATATATTTAAAAAATAAATACACACATTAAGGTTAATTTTAACT
66 AGAATAAAATATTATACATTGATATATTTAAAAAATAAATACACACATTAAGGTTAATTTTAACT
1397075 TTGTTTTACTTTATAAATATATACATATTTTCTAAATATGATATTAAACATATGACATAATATTT
131 TTGTTTTACTTTATAAATATATACATATTTTCTAAATATGATATTAAACATATGACATAATATTT
1397140 ATTCTAAAATATAATGAAAATATAAAATATAATATTTATAGTGCTCTACATACAATATTATGTAT
196 ATTCTAAAATATAATGAAAATATAAAATATAATATTTATAGTGCTCTACATACAATATTATGTAT
1397205 ATAATAAAATAATATATAATAATATAAGTAAAATAAATACCTAAAACATAAAACATTCTTTAATA
261 ATAATAAAATAATATATAATAATATAAGTAAAATAAATACCTAAAACATAAAACATTCTTTAATA
1397270 GTACAAATAAACAATATACATATATATTCATTAATATCTTAGTGACAAAAATGAGTGAAAAATAA
326 GTACAAATAAACAATATACATATATATTCATTAATATCTTAGTGACAAAAATGAGTGAAAAATAA
1397335 TTTTAAATTATAAACATTAATAAAAATAAATATCATGGCATGAAACAAGAAAATCACATAACAGG
391 TTTTAAATTATAAACATTAATAAAAATAAATATCATGGCATGAAACAAGAAAATCACATAACAGG
1397400 AGCACTAGAATCGTAATAAAATAATAAATATAGGACTAAAATGGAATAACATAAACATCAGTACC
456 AGCACTAGAATCGTAATAAAATAATAAATATAGGACTAAAATGGAATAACATAAACATCAGTACC
1397465 CCATTTCGAACGCAAATAATACATACAATAGTGGACTAAATTAAAATAATACAAAACAAAGTAGC
521 CCATTTCGAACGCAAATAATACATACAATAGTGGACTAAATTAAAATAATACAAAACAAAGTAGC
1397530 CAATTCGTAAATCATGTAAAATAAAAGAAAATGGTGACCAAAACACAAAAAACAC
586 CAATTCGTAAATCATGTAAAATAAAAGAAAATGGTGACCAAAACACAAAAAACAC
1397585 TAAACATGTCAAAGAATTAAAATATCAGATCTAAAAGATTTAAAAGTCTAAGGTTATTTTTAAAC
1 TAAACATGTCAAAGAATTAAAATATCAGATCTAAAAGATTTAAAAGTCTAAGGTTATTTTTAAAC
1397650 AGAATAAAATATTATACATTGATATATTTAAAAAATAAATACACACATTAAGGTTAATTTTAACT
66 AGAATAAAATATTATACATTGATATATTTAAAAAATAAATACACACATTAAGGTTAATTTTAACT
1397715 TTGTTTTACTTTATAAATATATACATATTTTCTAAATATGATATTAAACATATGACATAATATTT
131 TTGTTTTACTTTATAAATATATACATATTTTCTAAATATGATATTAAACATATGACATAATATTT
1397780 ATTCTAAAATATAATGAAAATATAAAATATAATATTTATAGTGCTCTACATACAATATTATGTAT
196 ATTCTAAAATATAATGAAAATATAAAATATAATATTTATAGTGCTCTACATACAATATTATGTAT
1397845 ATAATAAAATAATATATAATAATATAAGTAAAATAAATACCTAAAACATAAAACATTCTTTAATA
261 ATAATAAAATAATATATAATAATATAAGTAAAATAAATACCTAAAACATAAAACATTCTTTAATA
1397910 GTACAAATAAACAATATACATATATATTCATTAATATCTTAGTGACAAAAATGAGTGAAAAATAA
326 GTACAAATAAACAATATACATATATATTCATTAATATCTTAGTGACAAAAATGAGTGAAAAATAA
1397975 TTTTAAATTATAAACATTAATAAAAATAAATATCATGGCATGAAACAAGAAAATCACATAACAGG
391 TTTTAAATTATAAACATTAATAAAAATAAATATCATGGCATGAAACAAGAAAATCACATAACAGG
1398040 AGCACTAGAATCGTAATAAAATAATAAATATAGGACTAAAATGGAATAACATAAACATCAGTACC
456 AGCACTAGAATCGTAATAAAATAATAAATATAGGACTAAAATGGAATAACATAAACATCAGTACC
1398105 CCATTTCGAACGCAAATAATACATACAATAGTGGACTAAATTAAAATAATACAAAACAAAGTAGC
521 CCATTTCGAACGCAAATAATACATACAATAGTGGACTAAATTAAAATAATACAAAACAAAGTAGC
1398170 CAATTCGTAAATCATGTAAAATAAAAGAAAATGGTGACCAAAACACAAAAAACAC
586 CAATTCGTAAATCATGTAAAATAAAAGAAAATGGTGACCAAAACACAAAAAACAC
1398225 TAAAC
1 TAAAC
1398230 TTGAAGGGAC
Statistics
Matches: 645, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
640 645 1.00
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30
Consensus pattern (640 bp):
TAAACATGTCAAAGAATTAAAATATCAGATCTAAAAGATTTAAAAGTCTAAGGTTATTTTTAAAC
AGAATAAAATATTATACATTGATATATTTAAAAAATAAATACACACATTAAGGTTAATTTTAACT
TTGTTTTACTTTATAAATATATACATATTTTCTAAATATGATATTAAACATATGACATAATATTT
ATTCTAAAATATAATGAAAATATAAAATATAATATTTATAGTGCTCTACATACAATATTATGTAT
ATAATAAAATAATATATAATAATATAAGTAAAATAAATACCTAAAACATAAAACATTCTTTAATA
GTACAAATAAACAATATACATATATATTCATTAATATCTTAGTGACAAAAATGAGTGAAAAATAA
TTTTAAATTATAAACATTAATAAAAATAAATATCATGGCATGAAACAAGAAAATCACATAACAGG
AGCACTAGAATCGTAATAAAATAATAAATATAGGACTAAAATGGAATAACATAAACATCAGTACC
CCATTTCGAACGCAAATAATACATACAATAGTGGACTAAATTAAAATAATACAAAACAAAGTAGC
CAATTCGTAAATCATGTAAAATAAAAGAAAATGGTGACCAAAACACAAAAAACAC
Found at i:1399037 original size:30 final size:30
Alignment explanation
Indices: 1399003--1399077 Score: 123
Period size: 30 Copynumber: 2.5 Consensus size: 30
1398993 GGATGATGGG
* *
1399003 GTTGGTGTTGAAAAAAATGTGATGGTTGGT
1 GTTGGTGTTGAAAAAAATGAGATGGTAGGT
*
1399033 GTTGGTGTTGAAAAAAATGAGGTGGTAGGT
1 GTTGGTGTTGAAAAAAATGAGATGGTAGGT
1399063 GTTGGTGTTGAAAAA
1 GTTGGTGTTGAAAAA
1399078 TGGTGTTTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.33
Consensus pattern (30 bp):
GTTGGTGTTGAAAAAAATGAGATGGTAGGT
Found at i:1399412 original size:44 final size:44
Alignment explanation
Indices: 1399342--1399995 Score: 341
Period size: 44 Copynumber: 14.7 Consensus size: 44
1399332 TTAAAAATTC
* * * *
1399342 GATCCATCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTT
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
* * * * * * *
1399386 GATCTACCTCCTTCTGTGATAGAATCGAACAAAAAGTTGACGCT
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
* * * * * ****
1399430 GATCCAACTCATTCTGCGATGGATTTGAGCGAAAATAAAAATG-T
1 GATCCACCTCCTTCTGTGATGGAATCGAGCG-AAATGTCGATGCT
* * * *
1399474 CGATCCACCTCATTCTGTGATGGAATCGAACGAGATGTTGATGCT
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
* * * * * * *
1399519 GATATACCTCCTTCTCATTATGTGATAGAATCGAGCTAAAAG-CTAACGCT
1 G--AT-CCACC-TC-C-TTCTGTGATGGAATCGAGCGAAATGTC-GATGCT
* * * * ****
1399569 GATCCAACTCCTTCTGCGATGGATTTGAGCGAAAATAAAAATG-T
1 GATCCACCTCCTTCTGTGATGGAATCGAGCG-AAATGTCGATGCT
* * * *
1399613 CGATCCATCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTT
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
* * * * * * *
1399658 GATCTACCTCCTTCTATGATAGAATCGAGCAAAAAGTTGACGCT
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
* * * * * *** *
1399702 GATCCAACTCATTCTGCGATGGATTTGAGCGAAAAT-AAAAAG-T
1 GATCCACCTCCTTCTGTGATGGAATCGAGCG-AAATGTCGATGCT
* *
1399745 CGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCT
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
* * * * * *
1399790 GATCTACCTCCTTCTGTGATAGAATCGAGCTAAAAGTTGACGCT
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
* ** * * **** *
1399834 GATCCAACTCCTTCTACGATGGATTTGAGCGAAAATAAAAAT-AT
1 GATCCACCTCCTTCTGTGATGGAATCGAGCG-AAATGTCGATGCT
* * *
1399878 CGATCCACCTCTTTCTGTGATGGAATCGAACGAGATGTCGATGCT
1 -GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
** ** *
1399923 GATTTACCTCCTTCTGTGATATAATCGAGC-AAAAGTCGATGCT
1 GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
* *
1399966 GATCTACCTCCTTCTGTGATAGAATCGAGC
1 GATCCACCTCCTTCTGTGATGGAATCGAGC
1399996 AAAAAGTTGA
Statistics
Matches: 440, Mismatches: 149, Indels: 43
0.70 0.24 0.07
Matches are distributed among these distances:
43 43 0.10
44 259 0.59
45 99 0.22
46 4 0.01
47 7 0.02
48 4 0.01
50 24 0.05
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (44 bp):
GATCCACCTCCTTCTGTGATGGAATCGAGCGAAATGTCGATGCT
Found at i:1399509 original size:133 final size:133
Alignment explanation
Indices: 1399333--1399969 Score: 1001
Period size: 133 Copynumber: 4.8 Consensus size: 133
1399323 GTAATGGATT
* *
1399333 TAAAAAT-TCGATCCATCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTTGATCTACCTCC
1 TAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTCC
*
1399397 TTCTGTGATAGAATCGAACAAAAAGTTGACGCTGATCCAACTCATTCTGCGATGGATTTGAGCGA
66 TTCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCATTCTGCGATGGATTTGAGCGA
1399462 AAA
131 AAA
* * *
1399465 TAAAAATGTCGATCCACCTCATTCTGTGATGGAATCGAACGAGATGTTGATGCTGATATACCTCC
1 TAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTCC
* * * *
1399530 TTCTCATTATGTGATAGAATCGAGCTAAAAGCTAACGCTGATCCAACTCCTTCTGCGATGGATTT
66 -T-TC----TGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCATTCTGCGATGGATTT
1399595 GAGCGAAAA
125 GAGCGAAAA
* *
1399604 TAAAAATGTCGATCCATCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGTTGATCTACCTCC
1 TAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTCC
*
1399669 TTCTATGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCATTCTGCGATGGATTTGAGCGA
66 TTCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCATTCTGCGATGGATTTGAGCGA
1399734 AAA
131 AAA
1399737 TAAAAA-GTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTCC
1 TAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTCC
* * *
1399801 TTCTGTGATAGAATCGAGCTAAAAGTTGACGCTGATCCAACTCCTTCTACGATGGATTTGAGCGA
66 TTCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCATTCTGCGATGGATTTGAGCGA
1399866 AAA
131 AAA
* * *
1399869 TAAAAATATCGATCCACCTCTTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATTTACCTCC
1 TAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTCC
* * *
1399934 TTCTGTGATATAATCGAGC-AAAAGTCGATGCTGATC
66 TTCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATC
1399970 TACCTCCTTC
Statistics
Matches: 465, Mismatches: 32, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
132 148 0.32
133 191 0.41
134 1 0.00
135 2 0.00
137 2 0.00
138 1 0.00
139 120 0.26
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (133 bp):
TAAAAATGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATGTCGATGCTGATCTACCTCC
TTCTGTGATAGAATCGAGCAAAAAGTTGACGCTGATCCAACTCATTCTGCGATGGATTTGAGCGA
AAA
Found at i:1406997 original size:15 final size:15
Alignment explanation
Indices: 1406977--1407009 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
1406967 TAACCAAGTC
1406977 AGCAAAATTCTTCGT
1 AGCAAAATTCTTCGT
1406992 AGCAAAATTCTTCGT
1 AGCAAAATTCTTCGT
1407007 AGC
1 AGC
1407010 CTCTTTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (15 bp):
AGCAAAATTCTTCGT
Found at i:1412706 original size:30 final size:30
Alignment explanation
Indices: 1412659--1412744 Score: 129
Period size: 30 Copynumber: 2.9 Consensus size: 30
1412649 CAGGGAACAA
*
1412659 GGGATGATGGG-GTTGGTGTTGAAAAAAAT
1 GGGATGGTGGGTGTTGGTGTTGAAAAAAAT
*
1412688 GTGATGGTGGGTGTTGGTGTTGAAAAAAAT
1 GGGATGGTGGGTGTTGGTGTTGAAAAAAAT
* *
1412718 GGGGTGGTAGGTGTTGGTGTTGAAAAA
1 GGGATGGTGGGTGTTGGTGTTGAAAAA
1412745 TGGTGTTTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 9 0.18
30 42 0.82
ACGTcount: A:0.27, C:0.00, G:0.43, T:0.30
Consensus pattern (30 bp):
GGGATGGTGGGTGTTGGTGTTGAAAAAAAT
Found at i:1413572 original size:139 final size:139
Alignment explanation
Indices: 1413336--1413917 Score: 798
Period size: 139 Copynumber: 4.2 Consensus size: 139
1413326 ACTTGGTGGA
* * * * *
1413336 ACTATTCATGTAAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAAGCGC-GTTCTCG
1 ACTATTCATGTCAGTACCTATTATTTATGAGGGGACTTAGCAAAGTGGTGAAAGCGCATTTC-CG
* * * * * *
1413400 GGGGCACGCCTTCAATTATTTTATGAGATAATATGTTATCATTGCCCTAATATGTCACTCATGTC
65 GGGACGCGCCTTCAATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTC
1413465 CCCCGGGGGC
130 CCCCGGGGGC
* *
1413475 ACTATTCATGTCAGTACCTATTATTTATGAGGGGACTTAGCAAAGTGG-GAAAAGCTCGTTTCCG
1 ACTATTCATGTCAGTACCTATTATTTATGAGGGGACTTAGCAAAGTGGTG-AAAGCGCATTTCCG
*
1413539 GGGACGCGCCTTCATTTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTC
65 GGGACGCGCCTTCAATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTC
* *
1413604 TCTCGGGGGC
130 CCCCGGGGGC
* * * * *
1413614 ATTATTCATGTTAGTACCTATTATTT-TTAGGGGACTTGGCAAAGTGGTGAAAGCGTATTTCCGG
1 ACTATTCATGTCAGTACCTATTATTTATGAGGGGACTTAGCAAAGTGGTGAAAGCGCATTTCCGG
* * *
1413678 GGGCGCGCCTTCAATTATTTTTTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTTC
66 GGACGCGCCTTCAATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCC
* *
1413743 CTC--GGAC
131 CCCGGGGGC
* *
1413750 ACTGTTCATGTCAGTACCTATTATTTATGAGGGGACTTAGCAAAGTGGTGAAAGCGCATTCCCAG
1 ACTATTCATGTCAGTACCTATTATTTATGAGGGGACTTAGCAAAGTGGTGAAAGCGCATTTCC-G
* *
1413815 GGGA-GCGCCTTCAATTATTTTGTCAGATAATATGTTATCATTGCCCTATTATGTCACTCATATC
65 GGGACGCGCCTTCAATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTC
*
1413879 CCCCGGAGGC
130 CCCCGGGGGC
* *
1413889 ACTATTTATATCAGTACCTATTATTTATG
1 ACTATTCATGTCAGTACCTATTATTTATG
1413918 TTAGTACATA
Statistics
Matches: 390, Mismatches: 46, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
136 26 0.07
137 91 0.23
138 99 0.25
139 171 0.44
140 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (139 bp):
ACTATTCATGTCAGTACCTATTATTTATGAGGGGACTTAGCAAAGTGGTGAAAGCGCATTTCCGG
GGACGCGCCTTCAATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCC
CCCGGGGGC
Found at i:1413865 original size:275 final size:274
Alignment explanation
Indices: 1413255--1413914 Score: 894
Period size: 275 Copynumber: 2.4 Consensus size: 274
1413245 TACTATTCAC
* * * *
1413255 GTGAAGGCGCGTTCCCGGGG-GCGCCTTCGATTATTTTGTCAGAGAACATGTTATCATTGTCCTA
1 GTGAAAGCGCGTTCCCGGGGAGCGCCTTCAATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* *
1413319 TTATG----TCA--CT-T-GGTGGAACTATTCATGTAAGTACCTATTATTTTTTAGGGGACTTGG
66 TTATGTCACTCATTCTCTCGGAGGCACTATTCATGTAAGTACCTATTA-TTTTTAGGGGACTTGG
* * *
1413376 CAAAGTGGTGAAAGCGCGTTCTCGGGGGCACGCCTTCAATTATTTTATGAGATAATATGTTATCA
130 CAAAGTGGTGAAAGCGAGTTCTCGGGGGCACGCCTTCAATTATTTTATCAGAGAATATGTTATCA
*
1413441 TTGCCCTAATATGTCACTCATGTCCCCCGGGGGCACTATTCATGTCAGTACCTATTATTTATGAG
195 TTGCCCTAATATGTCACTCATGTCCCCC-GGGACACTATTCATGTCAGTACCTATTATTTATGAG
1413506 GGGACTTAGCAAAGTG
259 GGGACTTAGCAAAGTG
* * *
1413522 G-GAAAAGCTCGTTTCCGGGGACGCGCCTTCATTTATTTTGTCAGAGAATATGTTATCATTGCCC
1 GTG-AAAGCGCGTTCCCGGGGA-GCGCCTTCAATTATTTTGTCAGAGAATATGTTATCATTGCCC
* * *
1413586 TATTATGTCACTCATGTCTCTCGGGGGCATTATTCATGTTAGTACCTATTATTTTTAGGGGACTT
64 TATTATGTCACTCAT-TCTCTCGGAGGCACTATTCATGTAAGTACCTATTATTTTTAGGGGACTT
* * *
1413651 GGCAAAGTGGTGAAAGCGTATTTC-CGGGGGCGCGCCTTCAATTATTTTTTCAGAGAATATGTTA
128 GGCAAAGTGGTGAAAGCG-AGTTCTCGGGGGCACGCCTTCAATTATTTTATCAGAGAATATGTTA
* * * *
1413715 TCATTGCCCTATTATGTCACTCATGTTCCTC-GGACACTGTTCATGTCAGTACCTATTATTTATG
192 TCATTGCCCTAATATGTCACTCATGTCCCCCGGGACACTATTCATGTCAGTACCTATTATTTATG
1413779 AGGGGACTTAGCAAAGTG
257 AGGGGACTTAGCAAAGTG
* *
1413797 GTGAAAGCGCATTCCCAGGGGAGCGCCTTCAATTATTTTGTCAGATAATATGTTATCATTGCCCT
1 GTGAAAGCGCGTTCCC-GGGGAGCGCCTTCAATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* * * * *
1413862 ATTATGTCACTCATATCCCCCGGAGGCACTATTTATATCAGTACCTATTATTT
65 ATTATGTCACTCAT-TCTCTCGGAGGCACTATTCATGTAAGTACCTATTATTT
1413915 ATGTTAGTAC
Statistics
Matches: 343, Mismatches: 35, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
266 1 0.00
267 15 0.04
269 45 0.13
273 3 0.01
275 146 0.43
276 8 0.02
277 97 0.28
278 28 0.08
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (274 bp):
GTGAAAGCGCGTTCCCGGGGAGCGCCTTCAATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
TTATGTCACTCATTCTCTCGGAGGCACTATTCATGTAAGTACCTATTATTTTTAGGGGACTTGGC
AAAGTGGTGAAAGCGAGTTCTCGGGGGCACGCCTTCAATTATTTTATCAGAGAATATGTTATCAT
TGCCCTAATATGTCACTCATGTCCCCCGGGACACTATTCATGTCAGTACCTATTATTTATGAGGG
GACTTAGCAAAGTG
Found at i:1413923 original size:19 final size:19
Alignment explanation
Indices: 1413891--1413929 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
1413881 CCGGAGGCAC
*
1413891 TATTTATATCAGTACCTAT
1 TATTTATATCAGTACATAT
* *
1413910 TATTTATGTTAGTACATAT
1 TATTTATATCAGTACATAT
1413929 T
1 T
1413930 TAAGTACTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (19 bp):
TATTTATATCAGTACATAT
Found at i:1414036 original size:34 final size:34
Alignment explanation
Indices: 1413997--1414069 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
1413987 TTAAGTTGAA
*
1413997 TTTAATGTTATATTTCGAATACCATAATTTGTAT
1 TTTAATGTTAAATTTCGAATACCATAATTTGTAT
* *
1414031 TTTAATTTTAAATTTCGAATACTATAATTTGTAT
1 TTTAATGTTAAATTTCGAATACCATAATTTGTAT
*
1414065 ATTAA
1 TTTAA
1414070 AAACATTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.51
Consensus pattern (34 bp):
TTTAATGTTAAATTTCGAATACCATAATTTGTAT
Found at i:1414597 original size:21 final size:20
Alignment explanation
Indices: 1414573--1414639 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 20
1414563 GGTGTCATAA
*
1414573 AACCCTTCGGGCTAGGAATAT
1 AACCCTT-GGGCTAGGAATGT
1414594 AA-CCTTGAGTGCTAGGAATGT
1 AACCCTTG-G-GCTAGGAATGT
*
1414615 AACCCTGAGGGCTAGGAATGT
1 AACCCT-TGGGCTAGGAATGT
1414636 AACC
1 AACC
1414640 ATGCGGAGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 1 0.03
20 5 0.12
21 29 0.73
22 4 0.10
23 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (20 bp):
AACCCTTGGGCTAGGAATGT
Found at i:1416290 original size:23 final size:24
Alignment explanation
Indices: 1416250--1416297 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
1416240 ATTTATAATT
* * *
1416250 AATAAAAATTTATTATAAAT-TTA
1 AATAAAAAATAATAATAAATATTA
1416273 AATAAAAAATAATAATAAATATTA
1 AATAAAAAATAATAATAAATATTA
1416297 A
1 A
1416298 CATTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
AATAAAAAATAATAATAAATATTA
Found at i:1416496 original size:30 final size:30
Alignment explanation
Indices: 1416415--1416510 Score: 74
Period size: 30 Copynumber: 3.3 Consensus size: 30
1416405 TAATTAGTAC
* *
1416415 AAAAAATAATTAATTA-ATAA--ATTTAAAT
1 AAAAAATAA-TATTTATATAATTATTTTAAT
* * *
1416443 AAATAATAAT-TATATAAATATTATTTTAAT
1 AAAAAATAATATTTATATA-ATTATTTTAAT
* *
1416473 AAAAAATAATATTTATATAATTATATTATT
1 AAAAAATAATATTTATATAATTATTTTAAT
*
1416503 ATAAAATA
1 AAAAAATA
1416511 TAAAAATTAT
Statistics
Matches: 52, Mismatches: 11, Indels: 8
0.73 0.15 0.11
Matches are distributed among these distances:
26 2 0.04
27 3 0.06
28 9 0.17
30 32 0.62
31 6 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (30 bp):
AAAAAATAATATTTATATAATTATTTTAAT
Found at i:1423612 original size:73 final size:73
Alignment explanation
Indices: 1423516--1423653 Score: 224
Period size: 73 Copynumber: 1.9 Consensus size: 73
1423506 ATATTTTAAA
1423516 TATTATATTTTATCTTTGTTTTAGATATTTTAGTTTAAATAGATTTT-AGTATTTTAATTAGGAT
1 TATTATATTTTATCTTTGTTTTAGATATTTTAGTTTAAATAG-TTTTAAGTATTTTAATTAGGAT
1423580 TTAGAATGT
65 TTAGAATGT
* * * *
1423589 TATTTTATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAAGTGTTTTAATTATGATT
1 TATTATATTTTATCTTTGTTTTAGATATTTTAGTTTAAATAGTTTTAAGTATTTTAATTAGGATT
1423654 GAAGATATTA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 4 0.07
73 56 0.93
ACGTcount: A:0.28, C:0.01, G:0.12, T:0.59
Consensus pattern (73 bp):
TATTATATTTTATCTTTGTTTTAGATATTTTAGTTTAAATAGTTTTAAGTATTTTAATTAGGATT
TAGAATGT
Found at i:1429061 original size:37 final size:36
Alignment explanation
Indices: 1429013--1429113 Score: 127
Period size: 34 Copynumber: 2.8 Consensus size: 36
1429003 ATAGTAGAAA
*
1429013 TCTATCATATTTTTAGGAGTTTGAATCCTAACAAAAT
1 TCTATCCTATTTTTAGGAGTTTGAATCCT-ACAAAAT
**
1429050 T-TCATCCTATTTTTAGGAGTTTGAAT-CT-TGAAAT
1 TCT-ATCCTATTTTTAGGAGTTTGAATCCTACAAAAT
*
1429084 TCTATCCTATTTTTAAGAGTTTGAATCCTA
1 TCTATCCTATTTTTAGGAGTTTGAATCCTA
1429114 GTAGGACGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
34 27 0.48
35 3 0.05
36 3 0.05
37 23 0.41
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.45
Consensus pattern (36 bp):
TCTATCCTATTTTTAGGAGTTTGAATCCTACAAAAT
Found at i:1429960 original size:105 final size:105
Alignment explanation
Indices: 1429662--1430639 Score: 1466
Period size: 105 Copynumber: 9.3 Consensus size: 105
1429652 CATTGTTCCA
* * * ** * * *
1429662 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG-TTGTTGACAAG
* * * *
1429727 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
**
1429768 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGAATCTG-AA-TGA-AA-TT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
1429828 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
1429868 AGTCCAATATCATTCGTTGTGAAGTTGAAATTGGCTCT-AAGATTGGGAAGTTGTTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAA-ATTGAGAAGTTGTTGTTGACAAG
*
1429932 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
1429973 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
*
1430038 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGA
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
1430078 AGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
1430143 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
1430183 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
* * *
1430248 AGCGGTCCCTTCGTCTTGAAGTTGAACCTGCGTTGTCTGA
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
1430288 AGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGATAGGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
*
1430353 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGA
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
1430393 AGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACATGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
* *
1430458 AGCGATCCCTTCGTCGTGAAGTTGAAATTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
1430498 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTG-TTGTTGACAAG
* * * * * *
1430563 CAACCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGCCTCG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
1430604 AGTGCCACGATATCC-TCCTTCGTGGAGTTGAAATTG
1 AGT-CCA--ATATCCTTCGTT-GTGAAGTTGAAATTG
1430640 CAGATGGCCC
Statistics
Matches: 808, Mismatches: 52, Indels: 21
0.92 0.06 0.02
Matches are distributed among these distances:
100 83 0.10
101 1 0.00
102 4 0.00
103 4 0.00
104 3 0.00
105 605 0.75
106 81 0.10
107 3 0.00
108 4 0.00
109 20 0.02
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (105 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:1431377 original size:67 final size:65
Alignment explanation
Indices: 1431241--1431563 Score: 202
Period size: 65 Copynumber: 4.8 Consensus size: 65
1431231 AAGATATCTG
* * * **
1431241 TTGTTTCATGAGAAA-TGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTTGAAGA
1 TTGTTTCAAGAGAAACT-ATCTCAAGGGAGACAAAATT-TGTTTTAAGGGAAATAAATTCAAAGA
1431305 TTT
64 -TT
* * *
1431308 TGTGTTTCAAGAGTAACTATCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAGGT
1 T-TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGAT
1431373 T
65 T
* * ** * *
1431374 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAACTGTCTCAAGAGA
1 TTGTTTCAAGAGAAACTATCTCAAGGGAGAC-AAAATTTGTTTTAAGGGAAA-----T--A-A-A
** *
1431438 GACAAA-ACT
56 TTCAAAGATT
* * * * * * * * * * *
1431447 TAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATTTGTTTCAAAGAAAACATATTCAAATATT
1 TTGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
* * * * *
1431512 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAAT
1 TTGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTTAAGGGAAAT
1431564 TGTCTCAAGA
Statistics
Matches: 197, Mismatches: 45, Indels: 30
0.72 0.17 0.11
Matches are distributed among these distances:
64 5 0.03
65 81 0.41
66 8 0.04
67 23 0.12
68 30 0.15
69 1 0.01
70 1 0.01
72 4 0.02
73 39 0.20
74 5 0.03
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.29
Consensus pattern (65 bp):
TTGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
Found at i:1431415 original size:65 final size:67
Alignment explanation
Indices: 1431242--1431634 Score: 180
Period size: 65 Copynumber: 5.7 Consensus size: 67
1431232 AGATATCTGT
* * * * ** *
1431242 TGTTTCATGAGAAA-TGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTTGAAGAT
1 TGTTTCAAGAGAAACT-ATCTCAAGAGAGACAAAATT-TGTTTTAAGGGAAATAAATTCAAAGAG
1431306 TTTG
64 TTTG
* * *
1431310 TGTTTCAAGAGTAACTATCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAG-GTT
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGAGTT
1431374 T-
66 TG
* * * * * *
1431375 TGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAACT--GTCTCAAGAG
1 TGTTTCAAGAGAAACTATCTCAAGAGAGAC-AAAATTTGTTTTAAGGGAAA-TAAAT-TCAA-AG
*
1431437 AGACAAAACTT-
62 AG------TTTG
* * * * * * * * * * * *
1431448 AGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATTTGTTTCAAAGAAAACATATTCAAATA-TT
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGAGTT
1431512 T-
66 TG
* * * * **
1431513 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAAT-TGTCTCAAGATAG
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTTAAGGGAAATAAAT-TC-A-A-AG
*
1431577 ACGAAATT-
62 A-G--TTTG
* *
1431585 TGTTTCAAGAGAAACTGTCTCAAGATAGACAAAATTT-TTTTCAAGGGAAA
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTT-AAGGGAAA
1431635 CTGTCTCAAG
Statistics
Matches: 253, Mismatches: 48, Indels: 44
0.73 0.14 0.13
Matches are distributed among these distances:
64 3 0.01
65 86 0.34
66 11 0.04
67 24 0.09
68 32 0.13
69 1 0.00
71 3 0.01
72 50 0.20
73 42 0.17
74 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.29
Consensus pattern (67 bp):
TGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGAGTT
TG
Found at i:1431425 original size:36 final size:35
Alignment explanation
Indices: 1431374--1431654 Score: 254
Period size: 36 Copynumber: 8.0 Consensus size: 35
1431364 TTCAAAGGTT
* *
1431374 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
1431410 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * *
1431445 CTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAAT
1 -TT-GTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
* * **
1431483 TTGTTTCAA-AGAAAACATAT-TC---A-A-A-TATT
1 TTGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAA
*
1431512 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * * *
1431547 TTTATTTCAAGGGAAATTGTCTCAAGATAGACGAAAT
1 -TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
*
1431584 TTGTTTCAAGAGAAACTGTCTCAAGATAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* *
1431619 TTTTTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 -TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1431655 CTCTTCTAGT
Statistics
Matches: 202, Mismatches: 27, Indels: 32
0.77 0.10 0.12
Matches are distributed among these distances:
28 2 0.01
29 17 0.08
30 1 0.00
31 1 0.00
32 2 0.01
33 1 0.00
34 1 0.00
35 10 0.05
36 131 0.65
37 33 0.16
38 3 0.01
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.27
Consensus pattern (35 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
Found at i:1431484 original size:138 final size:137
Alignment explanation
Indices: 1431322--1431635 Score: 398
Period size: 138 Copynumber: 2.3 Consensus size: 137
1431312 TTTCAAGAGT
* * * *
1431322 AACTATCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAGGTTTTGTTTCAAGGGA
1 AACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAACAAATTCAAAGATTTTGTTTCAAGGGA
* *
1431387 AACTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGT
66 AACTGTCTCAAGAGAGAC-AAAATTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTAGT
1431451 TCCAAAAGA
129 TCCAAAAGA
* * * * * *
1431460 AACTGTCTCAAGGGAGACGAAATTTGTTTCAAAGAAAACATATTCAAATATTTTGTTTCAAGGGA
1 AACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAACAAATTCAAAGATTTTGTTTCAAGGGA
* * * * * *
1431525 AACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAATTGTCTCAAGATAGACGAAATTTGTTT
66 AACTGTCTCAAGAGAGACAAAATTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTAGTTC
*
1431590 CAAGAGA
131 CAAAAGA
**
1431597 AACTGTCTCAAGATAGACAAAATTT-TTTTCAAGGGAAAC
1 AACTGTCTCAAGGGAGACAAAATTTGTTTT-AAGGGAAAC
1431636 TGTCTCAAGA
Statistics
Matches: 149, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
136 3 0.02
137 44 0.30
138 102 0.68
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (137 bp):
AACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAACAAATTCAAAGATTTTGTTTCAAGGGA
AACTGTCTCAAGAGAGACAAAATTTATTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTAGTTC
CAAAAGA
Found at i:1431539 original size:102 final size:103
Alignment explanation
Indices: 1431410--1431656 Score: 297
Period size: 101 Copynumber: 2.4 Consensus size: 103
1431400 TAGACGAAAA
* *
1431410 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGA
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTA-TTCCAAAAGAAACTGTCTCAAGAGA
1431475 GACGAAATTTGTTTCAA-AGAAAACATAT-TCAA-AT-ATT
65 GACGAAATTTGTTTCAAGAG-AAAC-TATCTCAAGATAATT
* * ** * *
1431512 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAATTGTCTCAAGATAG
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTATTCCAAAAGAAACTGTCTCAAGAGAG
*
1431577 ACGAAATTTGTTTCAAGAGAAACTGTCTCAAGATAGACAAAATT
66 ACGAAATTTGTTTCAAGAGAAACTATCTCAAGAT------AATT
1431621 TT-TTTCAAGGGAAACTGTCTCAAGAGAGACAAAACT
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACT
1431657 CTTCTAGTGA
Statistics
Matches: 125, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
100 2 0.02
101 44 0.35
102 41 0.33
108 33 0.26
109 5 0.04
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.27
Consensus pattern (103 bp):
TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTATTCCAAAAGAAACTGTCTCAAGAGAG
ACGAAATTTGTTTCAAGAGAAACTATCTCAAGATAATT
Found at i:1431704 original size:35 final size:35
Alignment explanation
Indices: 1431524--1431704 Score: 152
Period size: 36 Copynumber: 5.1 Consensus size: 35
1431514 GTTTCAAGGG
* * *
1431524 AAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGG
1 AAACTGTCTCAAGAGAGACAAAATTTGTTTTAA-GA
* * * *
1431560 AAATTGTCTCAAGATAGACGAAATTTGTTTCAAGA
1 AAACTGTCTCAAGAGAGACAAAATTTGTTTTAAGA
* *
1431595 GAAACTGTCTCAAGATAGACAAAATTT-TTTTCAAGGG
1 -AAACTGTCTCAAGAGAGACAAAATTTGTTTT-AA-GA
* * * *
1431632 AAACTGTCTCAAGAGAGACAAAA-CTCTTCTAGTGA
1 AAACTGTCTCAAGAGAGACAAAATTTGTTTTA-AGA
* *
1431667 AAACGGTCTCAAGCGAGAC-AAATCTTGTTTTAAGA
1 AAACTGTCTCAAGAGAGACAAAAT-TTGTTTTAAGA
1431702 AAA
1 AAA
1431705 ACAATCATGA
Statistics
Matches: 118, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
34 3 0.03
35 29 0.25
36 85 0.72
37 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (35 bp):
AAACTGTCTCAAGAGAGACAAAATTTGTTTTAAGA
Found at i:1432160 original size:18 final size:18
Alignment explanation
Indices: 1432133--1432168 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1432123 TGTTGAATCC
* *
1432133 CCAAAGATGCCTCAATAT
1 CCAAAAATGCCCCAATAT
1432151 CCAAAAATGCCCCAATAT
1 CCAAAAATGCCCCAATAT
1432169 TTGATGTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.31, G:0.08, T:0.19
Consensus pattern (18 bp):
CCAAAAATGCCCCAATAT
Found at i:1432660 original size:22 final size:22
Alignment explanation
Indices: 1432583--1432653 Score: 133
Period size: 22 Copynumber: 3.2 Consensus size: 22
1432573 TTGTGTTTGG
*
1432583 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGACATTTGATGC
1432605 TCAAAGGTTTGACATTTGATGC
1 TCAAAGGTTTGACATTTGATGC
1432627 TCAAAGGTTTGACATTTGATGC
1 TCAAAGGTTTGACATTTGATGC
1432649 TCAAA
1 TCAAA
1432654 AGATTGATGG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (22 bp):
TCAAAGGTTTGACATTTGATGC
Found at i:1433318 original size:23 final size:22
Alignment explanation
Indices: 1433291--1433364 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 22
1433281 TTTTTGTCCC
1433291 TTTTTCTTTTTGATTTTTGCTCT
1 TTTTTCTTTTTG-TTTTTGCTCT
* * *
1433314 TTTTTCCTTTTGTTCTTGTTTCT
1 TTTTTCTTTTTGTTTTTG-CTCT
*
1433337 CTTTTTCTTTGTTTTTTTTTGCT-T
1 -TTTTTC-TT-TTTGTTTTTGCTCT
1433361 TTTT
1 TTTT
1433365 GCTTCTTTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
22 5 0.12
23 18 0.45
24 7 0.17
25 2 0.05
26 8 0.20
ACGTcount: A:0.01, C:0.14, G:0.08, T:0.77
Consensus pattern (22 bp):
TTTTTCTTTTTGTTTTTGCTCT
Found at i:1433323 original size:8 final size:7
Alignment explanation
Indices: 1433311--1433380 Score: 61
Period size: 8 Copynumber: 9.1 Consensus size: 7
1433301 TGATTTTTGC
1433311 TCTTTTT
1 TCTTTTT
1433318 TCCTTTTGT
1 T-CTTTT-T
*
1433327 TCTTGTT
1 TCTTTTT
1433334 TCTCTTTT
1 TCT-TTTT
1433342 TCTTTGTT
1 TCTTT-TT
1433350 T-TTTTT
1 TCTTTTT
1433356 TGCTTTTT
1 T-CTTTTT
1433364 TGCTTCTTT
1 T-CTT-TTT
1433373 TCTTTTT
1 TCTTTTT
1433380 T
1 T
1433381 ATTCTTGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
6 3 0.06
7 14 0.26
8 31 0.57
9 6 0.11
ACGTcount: A:0.00, C:0.16, G:0.07, T:0.77
Consensus pattern (7 bp):
TCTTTTT
Found at i:1433324 original size:16 final size:17
Alignment explanation
Indices: 1433305--1433359 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
1433295 TCTTTTTGAT
*
1433305 TTTTGCTCTTTTTTC-C
1 TTTTGCTCTTGTTTCTC
*
1433321 TTTTGTTCTTGTTTCTC
1 TTTTGCTCTTGTTTCTC
* *
1433338 TTTTTCT-TTGTTT-TT
1 TTTTGCTCTTGTTTCTC
1433353 TTTTGCT
1 TTTTGCT
1433360 TTTTTGCTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
15 7 0.22
16 19 0.59
17 6 0.19
ACGTcount: A:0.00, C:0.16, G:0.09, T:0.75
Consensus pattern (17 bp):
TTTTGCTCTTGTTTCTC
Found at i:1436584 original size:16 final size:18
Alignment explanation
Indices: 1436552--1436586 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
1436542 ATATAAAAAC
1436552 ATAAAATATAGGATAAAT
1 ATAAAATATAGGATAAAT
1436570 ATAAAA-ATA-GATAAAT
1 ATAAAATATAGGATAAAT
1436586 A
1 A
1436587 AATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 3 0.18
18 6 0.35
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
ATAAAATATAGGATAAAT
Found at i:1436622 original size:20 final size:20
Alignment explanation
Indices: 1436596--1436647 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
1436586 AAATGAGTAA
1436596 AATATATAAAAAAGTAAAAG
1 AATATATAAAAAAGTAAAAG
* * * *
1436616 CATATATATATAAGTAAAAT
1 AATATATAAAAAAGTAAAAG
1436636 AATA-ATAAAAAA
1 AATATATAAAAAA
1436648 AAAGAAAATC
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 6 0.24
20 19 0.76
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (20 bp):
AATATATAAAAAAGTAAAAG
Found at i:1436702 original size:2 final size:2
Alignment explanation
Indices: 1436695--1436727 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1436685 AAAATAGGAA
1436695 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1436728 ATAACACTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1437255 original size:34 final size:35
Alignment explanation
Indices: 1437173--1437270 Score: 128
Period size: 34 Copynumber: 2.8 Consensus size: 35
1437163 ATAGTAGAAC
1437173 TCTATCATATTTTTAGGAGTTTGAATCCTAACAAAAT
1 TCTATCATATTTTTAGGAGTTTGAATCCT-A-AAAAT
* *
1437210 T-TCATCCTATTTTTAGGAGTTTGAATCCT-GAAAT
1 TCT-ATCATATTTTTAGGAGTTTGAATCCTAAAAAT
*
1437244 TCTATCATATTTTTAGCAGTTTGAATC
1 TCTATCATATTTTTAGGAGTTTGAATC
1437271 GTAGTAGGAC
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
34 27 0.49
35 1 0.02
36 1 0.02
37 26 0.47
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (35 bp):
TCTATCATATTTTTAGGAGTTTGAATCCTAAAAAT
Found at i:1440127 original size:29 final size:30
Alignment explanation
Indices: 1440076--1440136 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
1440066 ATGCCCGTTT
* *
1440076 TTCCAGTTTCGTTCCTACTGTTT-ATTTCG
1 TTCCAGTTTCGTGCCTACTGTTTCATTCCG
*
1440105 TTCCAGTTTGGTGCCTAAC-GTTTCATTCCG
1 TTCCAGTTTCGTGCCT-ACTGTTTCATTCCG
1440135 TT
1 TT
1440137 ACTCAAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 18 0.67
30 9 0.33
ACGTcount: A:0.11, C:0.25, G:0.16, T:0.48
Consensus pattern (30 bp):
TTCCAGTTTCGTGCCTACTGTTTCATTCCG
Found at i:1450862 original size:19 final size:19
Alignment explanation
Indices: 1450817--1450890 Score: 107
Period size: 19 Copynumber: 3.9 Consensus size: 19
1450807 TGGATCCAGG
1450817 TGTAGAAAACAGACTGTA-
1 TGTAGAAAACAGACTGTAT
*
1450835 -GAAAGAAAACAGACTGTAT
1 TG-TAGAAAACAGACTGTAT
1450854 TGTAGAAAACAGACTGTAT
1 TGTAGAAAACAGACTGTAT
*
1450873 TGTAGAAAACAGGCTGTA
1 TGTAGAAAACAGACTGTA
1450891 GGAAATAGAC
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.02
18 15 0.30
19 33 0.66
20 1 0.02
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.22
Consensus pattern (19 bp):
TGTAGAAAACAGACTGTAT
Found at i:1455003 original size:19 final size:18
Alignment explanation
Indices: 1454957--1455012 Score: 78
Period size: 18 Copynumber: 3.1 Consensus size: 18
1454947 ACTTGGTACC
1454957 ATGTAGAAAACAGACTGT
1 ATGTAGAAAACAGACTGT
*
1454975 A-GAAAGAAAACAGACTGT
1 ATG-TAGAAAACAGACTGT
1454993 ATTGTAGAAAACAGACTGT
1 A-TGTAGAAAACAGACTGT
1455012 A
1 A
1455013 GGAACAGACA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 1 0.03
18 16 0.48
19 15 0.45
20 1 0.03
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.20
Consensus pattern (18 bp):
ATGTAGAAAACAGACTGT
Found at i:1462529 original size:24 final size:24
Alignment explanation
Indices: 1462502--1462549 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
1462492 GGCTCGATTT
1462502 TCTTCCAACAGTCAGACCTTTTAA
1 TCTTCCAACAGTCAGACCTTTTAA
1462526 TCTTCCAACAGTCAGACCTTTTAA
1 TCTTCCAACAGTCAGACCTTTTAA
1462550 ATTCCAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (24 bp):
TCTTCCAACAGTCAGACCTTTTAA
Found at i:1462921 original size:24 final size:26
Alignment explanation
Indices: 1462894--1462952 Score: 68
Period size: 29 Copynumber: 2.2 Consensus size: 26
1462884 TCCTACATGG
*
1462894 TTAATTT-A-CTTCACTGTAATTTGT
1 TTAATTTCATCTTCAATGTAATTTGT
1462918 TTAATTGCTTCATCTTCAATGTAATTTGT
1 TTAA-T--TTCATCTTCAATGTAATTTGT
1462947 TTAATT
1 TTAATT
1462953 GTTTATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
24 4 0.14
25 1 0.03
26 1 0.03
27 2 0.07
28 2 0.07
29 19 0.66
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.54
Consensus pattern (26 bp):
TTAATTTCATCTTCAATGTAATTTGT
Found at i:1463110 original size:20 final size:20
Alignment explanation
Indices: 1463050--1463112 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 20
1463040 ACTTGTTATT
1463050 TTGTTAAGGTAATCTGTTTAA
1 TTGTT-AGGTAATCTGTTTAA
** *
1463071 TTGTTTATCTATAATATGTTTAA
1 TTG-TTA--GGTAATCTGTTTAA
1463094 TTGTTAGGTAATCTGTTTA
1 TTGTTAGGTAATCTGTTTA
1463113 GAATTTAGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
20 10 0.30
21 4 0.12
22 5 0.15
23 14 0.42
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (20 bp):
TTGTTAGGTAATCTGTTTAA
Found at i:1480563 original size:22 final size:22
Alignment explanation
Indices: 1480508--1480556 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
1480498 TACAAGAATT
1480508 TTTTTTGTTATTATAATTCAAA
1 TTTTTTGTTATTATAATTCAAA
*
1480530 TTTTTTGTTATTATAATT-TAA
1 TTTTTTGTTATTATAATTCAAA
1480551 TTTTTT
1 TTTTTT
1480557 CGATATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTTTGTTATTATAATTCAAA
Found at i:1481182 original size:17 final size:17
Alignment explanation
Indices: 1481160--1481212 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
1481150 TATTTAATAA
*
1481160 AAAAATATTTTAAAATT
1 AAAAATATTATAAAATT
*
1481177 AAAAATA-TATAAAAAT
1 AAAAATATTATAAAATT
1481193 ATAAAATATTAATAAAATT
1 A-AAAATATT-ATAAAATT
1481212 A
1 A
1481213 CTAAAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 8 0.27
17 13 0.43
18 1 0.03
19 8 0.27
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAAATATTATAAAATT
Found at i:1481231 original size:2 final size:2
Alignment explanation
Indices: 1481219--1481252 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
1481209 ATTACTAAAA
1481219 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1481253 CATTAACTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1481868 original size:15 final size:16
Alignment explanation
Indices: 1481841--1481870 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1481831 TTAATATTTA
1481841 TATTTTAAATTTAAAC
1 TATTTTAAATTTAAAC
1481857 TATTTT-AATTTAAA
1 TATTTTAAATTTAAA
1481871 AAATAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTTTAAATTTAAAC
Found at i:1481868 original size:21 final size:21
Alignment explanation
Indices: 1481827--1481870 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1481817 TCTTATGTTT
* *
1481827 AATTTTAATATTTATATTTTA
1 AATTTAAATATTTATAATTTA
1481848 AATTTAAACTATTT-TAATTTA
1 AATTTAAA-TATTTATAATTTA
1481869 AA
1 AA
1481871 AAATAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTTAAATATTTATAATTTA
Found at i:1484886 original size:22 final size:21
Alignment explanation
Indices: 1484843--1484900 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
1484833 ATTGAATATA
**
1484843 TAAACGAACAATAAAAAACAC
1 TAAACGAACGCTAAAAAACAC
* *
1484864 TAAATGAATGCTAAACAAACAC
1 TAAACGAACGCTAAA-AAACAC
1484886 TAAACGAACGCTAAA
1 TAAACGAACGCTAAA
1484901 GGAGCATGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 11 0.37
22 19 0.63
ACGTcount: A:0.59, C:0.19, G:0.09, T:0.14
Consensus pattern (21 bp):
TAAACGAACGCTAAAAAACAC
Found at i:1488890 original size:60 final size:59
Alignment explanation
Indices: 1488801--1488958 Score: 183
Period size: 60 Copynumber: 2.6 Consensus size: 59
1488791 GACCTCATTT
* *
1488801 TAAATTGGTCCCTAAAATTTTAAATATTCTAATTTCAT-CCTCAAACTATGACTCACGTTC
1 TAAATT-GTCCCTAAACTTTTAAATATTCTAATTTCATCCCT-AAACTATAACTCACGTTC
* * * ** *
1488861 TAAATTAGTCCTTAAACTTTTGAACATTCTAATTTCATCCCTAAACTATAACTTTCTTTC
1 TAAATT-GTCCCTAAACTTTTAAATATTCTAATTTCATCCCTAAACTATAACTCACGTTC
* *
1488921 TAAATTGTTCCCCAAACTTTTAAATATTCCAATTTCAT
1 TAAATTG-TCCCTAAACTTTTAAATATTCTAATTTCAT
1488959 TCCCAAATTC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
59 1 0.01
60 78 0.95
61 3 0.04
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.41
Consensus pattern (59 bp):
TAAATTGTCCCTAAACTTTTAAATATTCTAATTTCATCCCTAAACTATAACTCACGTTC
Found at i:1489192 original size:60 final size:58
Alignment explanation
Indices: 1489085--1489260 Score: 176
Period size: 60 Copynumber: 2.9 Consensus size: 58
1489075 GTATGTACAT
* * *
1489085 ATAGTTTGGGATGAAATTGGAATGTTCAAAAAGTTTATGAACCAATTTAGAATGAAACTC
1 ATAGTTTGGGATGAAATTGAAATGTTC-AAAAGTTTA-GGACCAATTTAGAATGAAACGC
* * * *
1489145 ATAGTTTGGGGATGAAATTGAAATGTTCAAAAGTTTGAGGACTAATTTAGAATCATAGGC
1 ATAGTTT-GGGATGAAATTGAAATGTTCAAAAGTTT-AGGACCAATTTAGAATGAAACGC
* * *
1489205 ATAGTTTAGGGATGAAACTTAAACAT-TT-AAAAATTTAAGGACCAATTTAAAATGAA
1 ATAGTTT-GGGATGAAA-TTGAA-ATGTTCAAAAGTTT-AGGACCAATTTAGAATGAA
1489261 GTTTATACTT
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
60 69 0.71
61 26 0.27
62 2 0.02
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.31
Consensus pattern (58 bp):
ATAGTTTGGGATGAAATTGAAATGTTCAAAAGTTTAGGACCAATTTAGAATGAAACGC
Found at i:1489341 original size:73 final size:74
Alignment explanation
Indices: 1489248--1489398 Score: 241
Period size: 73 Copynumber: 2.0 Consensus size: 74
1489238 TTTAAGGACC
* * * *
1489248 AATTTAAAATGAAGTTTATACTTTGAGGATATGTGATGTAGTTAACTCTT-AAATTATAATAAAA
1 AATTTAAAATGAAGGTTATACTTTGAGGACATGTGATGCAATTAACTCTTAAAATTATAATAAAA
1489312 AGAGAATAA
66 AGAGAATAA
1489321 AATTTAAAATGAAGGTTATACTTTGAGGACATGTGATGCAATTAACTCTTAAAAATTATAATAAA
1 AATTTAAAATGAAGGTTATACTTTGAGGACATGTGATGCAATTAACTCTT-AAAATTATAATAAA
*
1489386 AAGTGAATAA
65 AAGAGAATAA
1489396 AAT
1 AAT
1489399 AACAAACCAA
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
73 46 0.65
75 25 0.35
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.34
Consensus pattern (74 bp):
AATTTAAAATGAAGGTTATACTTTGAGGACATGTGATGCAATTAACTCTTAAAATTATAATAAAA
AGAGAATAA
Found at i:1496260 original size:81 final size:81
Alignment explanation
Indices: 1496159--1497126 Score: 1131
Period size: 81 Copynumber: 11.9 Consensus size: 81
1496149 CCCAGCGAGC
* * * * *
1496159 CAAGGATTCCAAAAACGAAGGTTCATCAGCGCCAACTTCTCAACATAA-GAGA-AAGCAATCTTC
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCA-ACAA-CAATCTTC
*
1496222 TTTGGAGGGTCAGCAAGA
64 TTTGGAGCGTCAGCAAGA
* * * * *
1496240 CAAGGATTCCAAAAAAGAAGGTTCATCAGCGCCAACTTCTCAACATAACCGACAACAATCTTCTT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
* *
1496305 TAGAGTGTCAGCAAGA
66 TGGAGCGTCAGCAAGA
* * * * * * * *
1496321 CAAGGATTTCAAAAATGAAAGTTCATCAGCGTCAGCTGCTCAACATAACCGACAAAAATCTTCTT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
* *
1496386 CGGAGTGTCAGCAAGA
66 TGGAGCGTCAGCAAGA
* * * *
1496402 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAACTTCTCAACATAACCGACAACAATCTTCTT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
* * *
1496467 CGGAGTGTCAGCGAGA
66 TGGAGCGTCAGCAAGA
*
1496483 CAAGGATTCAAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTT-TT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
1496547 TCGGAGCGTCAGCAAGA
66 T-GGAGCGTCAGCAAGA
** *
1496564 CAAGGATTCCAAAGTTGAAGGTTCGTCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
1496629 TGGAGCGTCAGCAAGA
66 TGGAGCGTCAGCAAGA
* * * *
1496645 CAAGGATTCTAAAAGTGAAGGTTCATCA-TGCCGGCTTCTCAAGAGAACCAACAACAATCTTCTT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
1496709 TGGAGCGTCAGCAAGA
66 TGGAGCGTCAGCAAGA
* ** * * *
1496725 CAAGTATTCCAAAGGTGAAGGTTCATCAGCGCCAGCTTCTCAAGAAAACCAACATCAATCATCTT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
* *
1496790 CGGAACGTCAGCAAGA
66 TGGAGCGTCAGCAAGA
* * * *
1496806 CAAGGTTTCCAGAGAA-GAAGGTTCATCAGCGTCAGCTTCTCAAGAGAAGAACCAACAACAGTCT
1 CAAGGATTCCA-AAAATGAAGGTTCATCAGCGCCAGCTTCTC-A-AG-AGAACCAACAACAATCT
* *
1496870 TCTTTGGTGTGTCAGCAAGA
62 TCTTTGGAGCGTCAGCAAGA
* * * * *
1496890 CAAGGATTCCAGAGATGAAGGTTCATCAGTGACAGCTTCTCAAGAGAACCAACAATC-ATCATCT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAA-CAATCTTCT
*
1496954 TTGGAGCATCAGCAAGA
65 TTGGAGCGTCAGCAAGA
* * * * *
1496971 CCAGGATTCCAATAATGAAGGTTCATCAGC-ACAGGCTTCTCAAGTGAACCAACAACAATCGTCT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCA-GCTTCTCAAGAGAACCAACAACAATCTTCT
***
1497035 TTGGAATTTCAGCAAGA
65 TTGGAGCGTCAGCAAGA
* ** * * * *
1497052 CAAGGATTCCAAAAATGAAGGTTCATTAGCATCAGCTTCTCGACAGAACCCACAACAATCATCTT
1 CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
**
1497117 CAGAGCGTCA
66 TGGAGCGTCA
1497127 ACCACCGCCC
Statistics
Matches: 775, Mismatches: 98, Indels: 28
0.86 0.11 0.03
Matches are distributed among these distances:
80 81 0.10
81 616 0.79
82 12 0.02
83 4 0.01
84 62 0.08
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (81 bp):
CAAGGATTCCAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAACAATCTTCTT
TGGAGCGTCAGCAAGA
Found at i:1497109 original size:488 final size:485
Alignment explanation
Indices: 1496214--1497126 Score: 1188
Period size: 488 Copynumber: 1.9 Consensus size: 485
1496204 TAAGAGAAAG
*
1496214 CAATCTTCTTTGGAGGGTCAGCAAGACAAGGATTCCAAAAAAGAAGGTTCATCAGCGCCAACTTC
1 CAATCTTCTTTGGAGCGTCAGCAAGACAAGGATTCCAAAAAAGAAGGTTCATCAGCGCCAACTTC
* * * * **
1496279 TCAACATAACCGACAACAATCTTCTTTAGAGTGTCAGCAAGACAAGGATTTCAAAAATGAAAGTT
66 TCAACAAAACCAACAACAATCATCTTCAGAACGTCAGCAAGACAAGGATTTCAAAAATGAAAGTT
* * *
1496344 CATCAGCGTCAGCTGCTCAACATAACCGACAAAAATCTTCTTCGGAGTGTCAGCAAGACAAGGAT
131 CATCAGCGTCAGCTGCTCAAAAGAACCAACAAAAATCTTCTTCGGAGTGTCAGCAAGACAAGGAT
* * * * **
1496409 TCCAAAAATGAAGGTTCATCAGCGCCAACTTCTCAACATAACCGACAACAATCTTCTTCGGAGTG
196 TCCAAAAATGAAGGTTCATCAGCGACAACTTCTCAACAGAACCAACAACAATCATCTTCGGAGCA
* *
1496474 TCAGCGAGACAAGGATTCAAAAAATGAAGGTTCATCAGCGCCAGCTTCTCAAGAGAACCAACAAC
261 TCAGCAAGACAAGGATTCAAAAAATGAAGGTTCATCAGCGACAGCTTCTCAAGAGAACCAACAAC
* * ** * *
1496539 AATCTTTTTCGGAGCGTCAGCAAGACAAGGATTCCAAAGTTGAAGGTTCGTCAGCGCCAGCTTCT
326 AATCTCTTTCGGAACGTCAGCAAGACAAGGATTCCAAAAATGAAGGTTCATCAGCACCAGCTTCT
* * **
1496604 CAAGAGAACCAACAACAATCTTCTTTGGAGCGTCAGCAAGACAAGGATTCTAAAAGTGAAGGTTC
391 CAACAGAACCAACAACAATCATCTTCAGAGCGTCAGCAAGACAAGGATTCTAAAAGTGAAGGTTC
1496669 ATCATGCCGGCTTCTCAAGAGAACCAACAA
456 ATCATGCCGGCTTCTCAAGAGAACCAACAA
* *** *
1496699 CAATCTTCTTTGGAGCGTCAGCAAGACAAGTATTCCAAAGGTGAAGGTTCATCAGCGCCAGCTTC
1 CAATCTTCTTTGGAGCGTCAGCAAGACAAGGATTCCAAAAAAGAAGGTTCATCAGCGCCAACTTC
* * * * *
1496764 TCAAGAAAACCAACATCAATCATCTTCGGAACGTCAGCAAGACAAGG-TTTCCAGAGAA-GAAGG
66 TCAACAAAACCAACAACAATCATCTTCAGAACGTCAGCAAGACAAGGATTT-CA-AAAATGAAAG
* * * * *
1496827 TTCATCAGCGTCAGCTTCTCAAGAGAAGAACCAACAACAGTCTTCTTTGGTGTGTCAGCAAGACA
129 TTCATCAGCGTCAGCTGCTC-A-A-AAGAACCAACAAAAATCTTCTTCGGAGTGTCAGCAAGACA
* * * * * *
1496892 AGGATTCCAGAGATGAAGGTTCATCAGTGACAGCTTCTCAAGAGAACCAACAATC-ATCATCTTT
191 AGGATTCCAAAAATGAAGGTTCATCAGCGACAACTTCTCAACAGAACCAACAA-CAATCATCTTC
* * * *
1496956 GGAGCATCAGCAAGACCAGGATTCCAATAATGAAGGTTCATCAGC-ACAGGCTTCTCAAGTGAAC
255 GGAGCATCAGCAAGACAAGGATTCAAAAAATGAAGGTTCATCAGCGACA-GCTTCTCAAGAGAAC
** * *
1497020 CAACAACAATCGTCTTT-GGAATTTCAGCAAGACAAGGATTCCAAAAATGAAGGTTCATTAGCAT
319 CAACAACAATC-TCTTTCGGAACGTCAGCAAGACAAGGATTCCAAAAATGAAGGTTCATCAGCAC
* *
1497084 CAGCTTCTCGACAGAACCCACAACAATCATCTTCAGAGCGTCA
383 CAGCTTCTCAACAGAACCAACAACAATCATCTTCAGAGCGTCA
1497127 ACCACCGCCC
Statistics
Matches: 361, Mismatches: 59, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
484 3 0.01
485 122 0.34
486 4 0.01
487 3 0.01
488 224 0.62
489 5 0.01
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.22
Consensus pattern (485 bp):
CAATCTTCTTTGGAGCGTCAGCAAGACAAGGATTCCAAAAAAGAAGGTTCATCAGCGCCAACTTC
TCAACAAAACCAACAACAATCATCTTCAGAACGTCAGCAAGACAAGGATTTCAAAAATGAAAGTT
CATCAGCGTCAGCTGCTCAAAAGAACCAACAAAAATCTTCTTCGGAGTGTCAGCAAGACAAGGAT
TCCAAAAATGAAGGTTCATCAGCGACAACTTCTCAACAGAACCAACAACAATCATCTTCGGAGCA
TCAGCAAGACAAGGATTCAAAAAATGAAGGTTCATCAGCGACAGCTTCTCAAGAGAACCAACAAC
AATCTCTTTCGGAACGTCAGCAAGACAAGGATTCCAAAAATGAAGGTTCATCAGCACCAGCTTCT
CAACAGAACCAACAACAATCATCTTCAGAGCGTCAGCAAGACAAGGATTCTAAAAGTGAAGGTTC
ATCATGCCGGCTTCTCAAGAGAACCAACAA
Found at i:1501275 original size:63 final size:62
Alignment explanation
Indices: 1501145--1501276 Score: 142
Period size: 63 Copynumber: 2.1 Consensus size: 62
1501135 GCACAAAGTG
* * * ****
1501145 TGCATCGATGCATAAAATGCATTCGATTTTCAAAATAGCCTGAGTGCATCGATGTATGGCTGG
1 TGCATTGATGCATAAAATGCATTCGATTTTCAAAATACCCTGAGTGCATCGATGCAT-GAAAA
*
1501208 TGCATTGATGCATCAAATGCATTCGATGTTTTCATAAA-ACCCTGAGTGCATCGATGCAT-AAAA
1 TGCATTGATGCATAAAATGCATTCGA--TTTTCA-AAATACCCTGAGTGCATCGATGCATGAAAA
1501271 TGCATT
1 TGCATT
1501277 CAATGTTCAA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
63 30 0.52
65 25 0.43
66 3 0.05
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31
Consensus pattern (62 bp):
TGCATTGATGCATAAAATGCATTCGATTTTCAAAATACCCTGAGTGCATCGATGCATGAAAA
Found at i:1504021 original size:21 final size:22
Alignment explanation
Indices: 1503960--1504040 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 22
1503950 CATGGCCTTG
1503960 TGCATCGATGCACATTCAAGGCA
1 TGCATCGATGCACATTCAAGG-A
* *
1503983 TGCATC-AGTGCACCTTCATGG-
1 TGCATCGA-TGCACATTCAAGGA
*
1504004 TGTATCGATGCACATTCAAAGGGA
1 TGCATCGATGCACATTC-AA-GGA
1504028 TGCATCGATGCAC
1 TGCATCGATGCAC
1504041 TGTTAAGTGT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
21 13 0.28
22 3 0.06
23 19 0.40
24 12 0.26
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (22 bp):
TGCATCGATGCACATTCAAGGA
Found at i:1504051 original size:44 final size:44
Alignment explanation
Indices: 1503963--1504059 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 44
1503953 GGCCTTGTGC
*
1503963 ATCGATGCACATTCAAGGCATGCATCAGTGCACCTTCATGGTGT
1 ATCGATGCACATTCAAGGCATGCATCAGTGCACCTTCATAGTGT
* *
1504007 ATCGATGCACATTCAAAGGGATGCATC-GATGCA-CTGTTA-AGTGT
1 ATCGATGCACATTC-AAGGCATGCATCAG-TGCACCT-TCATAGTGT
1504051 ATCGATGCA
1 ATCGATGCA
1504060 TTAAGCACAA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
44 30 0.64
45 17 0.36
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (44 bp):
ATCGATGCACATTCAAGGCATGCATCAGTGCACCTTCATAGTGT
Found at i:1505645 original size:323 final size:324
Alignment explanation
Indices: 1505050--1505695 Score: 1215
Period size: 322 Copynumber: 2.0 Consensus size: 324
1505040 ATTGGAGTGT
* *
1505050 CATGAGGTTTCCCATTTTCCAGTCCAAACTTCTTGAGCATATCTTTGATGTACTTAGCTTGATTG
1 CATGAGGTTTCCCATTTTCCAGTCCAAACTTCTTGAGAATATCTTTGACGTACTTAGCTTGATTG
1505115 ATGAAGATGCCATCTTTTCTTTGCTTGATTTGGAGTCCCAAGAAAAATGAGAGCTCCCCCATCAT
66 ATGAAGATGCCATCTTTTCTTTGCTTGATTTGGAGTCCCAAGAAAAATGAGAGCTCCCCCATCAT
1505180 GCTCATCTCAAATTTACTTTACATTAGCTTAGAAAATTCTTGGAAAAGAACATCATTAGTAGAAC
131 GCTCATCTCAAATTTACTTTACATTAGCTTAGAAAATTCTTGGAAAAGAACATCATTAGTAGAAC
1505245 CAAATATTATATCATCAACATAAATTTGAACTACTAATAAATCTGTACCTTTATGCTTTAAAACA
196 CAAATATTATATCATCAACATAAATTTGAACTACTAATAAATCTGTACCTTTATGCTTTAAAACA
*
1505310 ATGTAGTGTCAACCTTCCCTTTTGAAAAACC-TTTTTCAATTAAAAAGTTTGACAATCTTTCAC
261 ATGTAATGTCAACCTTCCCTTTTGAAAAACCTTTTTTCAATTAAAAAGTTTGACAATCTTTCAC
*
1505373 CATGAGGTTTCTCATTTTCCAGTCCAAACTTCTTGAGAATATCTTTGACGTACTTAGCTTGATTG
1 CATGAGGTTTCCCATTTTCCAGTCCAAACTTCTTGAGAATATCTTTGACGTACTTAGCTTGATTG
1505438 ATGAAGATGCCATCTTTTCTTTGCTTGATTT-GAGTCCCAAGAAAAATGAGAGCTCCCCCATCAT
66 ATGAAGATGCCATCTTTTCTTTGCTTGATTTGGAGTCCCAAGAAAAATGAGAGCTCCCCCATCAT
*
1505502 GCTCATCTCAAATTTACTTTGCATTAGCTTAGAAAATTCTTGGAAAAGAACATCATTAGTAGAAC
131 GCTCATCTCAAATTTACTTTACATTAGCTTAGAAAATTCTTGGAAAAGAACATCATTAGTAGAAC
*
1505567 CAAATATTATATCATCAACATAAATTTGAACTACTAATAAATCTTTACCTTTATGCTTTAAAAAC
196 CAAATATTATATCATCAACATAAATTTGAACTACTAATAAATCTGTACCTTTATGCTTT-AAAAC
1505632 AATGTAATGTCAACCTTCCCTTTTGAAAAACCTTTTTTCAATTAAAAAGTTTGACAATCTTTCA
260 AATGTAATGTCAACCTTCCCTTTTGAAAAACCTTTTTTCAATTAAAAAGTTTGACAATCTTTCA
1505696 TACCAAGCTC
Statistics
Matches: 315, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
322 155 0.49
323 129 0.41
324 31 0.10
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (324 bp):
CATGAGGTTTCCCATTTTCCAGTCCAAACTTCTTGAGAATATCTTTGACGTACTTAGCTTGATTG
ATGAAGATGCCATCTTTTCTTTGCTTGATTTGGAGTCCCAAGAAAAATGAGAGCTCCCCCATCAT
GCTCATCTCAAATTTACTTTACATTAGCTTAGAAAATTCTTGGAAAAGAACATCATTAGTAGAAC
CAAATATTATATCATCAACATAAATTTGAACTACTAATAAATCTGTACCTTTATGCTTTAAAACA
ATGTAATGTCAACCTTCCCTTTTGAAAAACCTTTTTTCAATTAAAAAGTTTGACAATCTTTCAC
Found at i:1510276 original size:65 final size:65
Alignment explanation
Indices: 1510138--1510298 Score: 229
Period size: 65 Copynumber: 2.5 Consensus size: 65
1510128 GTGCACCAAG
* *
1510138 TGTGCATCGATGCATAAAATGCATTCGATG-TTTCAAAATAGCCTGAGTGCATCGATGCATGGCT
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATACCCTAAGTGCATCGATGCATGGCT
* * * *
1510202 GGTGAATCGATGCATCAAATGCATTCGTTGTTTTCATAAA-ACCCTAAGTGCATCGATGCATGG-
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTTCA-AAATACCCTAAGTGCATCGATGCATGGC
1510265 T
65 T
1510266 ATGTGCATCGATGCATAAAATGCATTCGATGTT
1 -TGTGCATCGATGCATAAAATGCATTCGATGTT
1510299 CAATTTATTC
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
64 27 0.32
65 54 0.64
66 3 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (65 bp):
TGTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATACCCTAAGTGCATCGATGCATGGCT
Found at i:1510337 original size:65 final size:63
Alignment explanation
Indices: 1510139--1510339 Score: 178
Period size: 65 Copynumber: 3.1 Consensus size: 63
1510129 TGCACCAAGT
* * *
1510139 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCC-TGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAATATACCCATGA--GCATCGATGCATGGATG
* * * * * *
1510203 GTGAATCGATGCATCAAATGCATTCGTTGTTTTC-ATAAAACCCTAAGTGCATCGATGCATGGTA
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAAT-ATACCC-ATGAGCATCGATGCATGG-A
1510267 T-
62 TG
* *
1510268 GTGCATCGATGCATAAAATGCATTCGATG-TTCAATTTATTCCATG-GCCCATCGATGCATGGAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAATATA-CCCATGAG--CATCGATGCATGGAT
1510331 CG
63 -G
1510333 GTGCATC
1 GTGCATC
1510340 ACTTTGAAAA
Statistics
Matches: 110, Mismatches: 16, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
62 1 0.01
63 8 0.07
64 44 0.40
65 55 0.50
66 1 0.01
67 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (63 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAATATACCCATGAGCATCGATGCATGGATG
Found at i:1511041 original size:22 final size:22
Alignment explanation
Indices: 1511013--1511055 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
1511003 ATTTTGAAAA
*
1511013 TCAAAGTCAACGGTTAGACCAG
1 TCAAAGTCAACAGTTAGACCAG
*
1511035 TCAAAGTCAACAGTTTGACCA
1 TCAAAGTCAACAGTTAGACCA
1511056 AAGTCAACGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (22 bp):
TCAAAGTCAACAGTTAGACCAG
Found at i:1511271 original size:23 final size:24
Alignment explanation
Indices: 1511219--1511273 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
1511209 CAAATACATC
*
1511219 TAAATCAATCCAATATTACACCAA
1 TAAACCAATCCAATATTACACCAA
1511243 TAAACCAATCC-A-ATTATCACCAA
1 TAAACCAATCCAATATTA-CACCAA
*
1511266 TGAACCAA
1 TAAACCAA
1511274 CCGATAACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 4 0.14
23 14 0.50
24 10 0.36
ACGTcount: A:0.49, C:0.27, G:0.02, T:0.22
Consensus pattern (24 bp):
TAAACCAATCCAATATTACACCAA
Found at i:1516650 original size:21 final size:21
Alignment explanation
Indices: 1516624--1516682 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 21
1516614 CGTATAAATG
1516624 CACCGAAGTGCCATAGAATTA
1 CACCGAAGTGCCATAGAATTA
* *
1516645 CACCGAAGTGCCGCGTAGAATTG
1 CACCGAAGTG-C-CATAGAATTA
*
1516668 CACCGTAGTGCCATA
1 CACCGAAGTGCCATA
1516683 TAAGATTGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 13 0.41
22 2 0.06
23 17 0.53
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.19
Consensus pattern (21 bp):
CACCGAAGTGCCATAGAATTA
Found at i:1516937 original size:30 final size:30
Alignment explanation
Indices: 1516903--1516961 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
1516893 TATTGTATAG
1516903 ACATATAAT-TTCCAT-ACCTTTATCACATAA
1 ACATAT-ATGTTCCATCA-CTTTATCACATAA
1516933 ACATATATGTTCCATCACTTTATCACATA
1 ACATATATGTTCCATCACTTTATCACATA
1516962 GCTTATATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 2 0.07
30 24 0.89
31 1 0.04
ACGTcount: A:0.37, C:0.24, G:0.02, T:0.37
Consensus pattern (30 bp):
ACATATATGTTCCATCACTTTATCACATAA
Found at i:1517404 original size:63 final size:64
Alignment explanation
Indices: 1517303--1517440 Score: 154
Period size: 64 Copynumber: 2.2 Consensus size: 64
1517293 TTAATGAAGG
** * * *
1517303 TATGCATCGATGCATAAATCCTATTCGATGTTTATA-TTTAAGGGGGTGCATCGATGCACTCCT
1 TATGCATCGATGCATAAATCCTATTCGATGTTTATATTTTAAAAGAGTACATCGATGCACTCCA
** * * *
1517366 TATGCATCGATGCATTGATGGC-ATTCGATGTTTGTATTTTAAAAGAGTACATCGATGCACTTCA
1 TATGCATCGATGCATAAAT-CCTATTCGATGTTTATATTTTAAAAGAGTACATCGATGCACTCCA
*
1517430 TGTGCATCGAT
1 TATGCATCGAT
1517441 ATACCTTGAA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
63 30 0.48
64 32 0.52
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (64 bp):
TATGCATCGATGCATAAATCCTATTCGATGTTTATATTTTAAAAGAGTACATCGATGCACTCCA
Found at i:1523476 original size:23 final size:23
Alignment explanation
Indices: 1523440--1523500 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
1523430 CTCATATAAA
1523440 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
* *
1523463 TGTACCGAATTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
1523486 TGCACCGTAGTGCCA
1 TGCACCGAAGTGCCA
1523501 TATAAGATTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:1523767 original size:31 final size:30
Alignment explanation
Indices: 1523723--1523783 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
1523713 TATTGTATAG
1523723 ACATATAATTTCCAT-ACCTTTATCACATAA
1 ACATATAATTTCCATCA-CTTTATCACATAA
* *
1523753 ACATATCATGTTCCATCACTTTATCATATAA
1 ACATATAAT-TTCCATCACTTTATCACATAA
1523784 CTTATATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 8 0.30
31 18 0.67
32 1 0.04
ACGTcount: A:0.38, C:0.23, G:0.02, T:0.38
Consensus pattern (30 bp):
ACATATAATTTCCATCACTTTATCACATAA
Found at i:1525407 original size:12 final size:12
Alignment explanation
Indices: 1525390--1525414 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1525380 CTCGTACTGG
1525390 TTGACAATATGC
1 TTGACAATATGC
1525402 TTGACAATATGC
1 TTGACAATATGC
1525414 T
1 T
1525415 AATGCTAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (12 bp):
TTGACAATATGC
Found at i:1531307 original size:64 final size:63
Alignment explanation
Indices: 1531233--1531394 Score: 211
Period size: 64 Copynumber: 2.5 Consensus size: 63
1531223 AATTGTTCAG
*
1531233 AGTGTATCGATGCACAAGAAGTGCATCGATGCACCCATTACAAATGAAAACATCGAA-TGCAGTT
1 AGTGTATCGATGCATAAGAAGTGCATCGATGCACCCATTA-AAATGAAAACATCGAAGTG-AGTT
* * *
1531297 AGTGCATCGATGCATAAGGAGTGCATCGATGCACCCCCTTAAAATGAAAACATCGAAGGTGAGTT
1 AGTGTATCGATGCATAAGAAGTGCATCGATGCA-CCCATTAAAATGAAAACATCGAA-GTGAGTT
** *
1531362 -GTGTATCGATGCATGTGTAGTGCATCGATGCAC
1 AGTGTATCGATGCATAAGAAGTGCATCGATGCAC
1531395 ATGTTAAAGA
Statistics
Matches: 87, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.01
64 74 0.85
65 10 0.11
66 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (63 bp):
AGTGTATCGATGCATAAGAAGTGCATCGATGCACCCATTAAAATGAAAACATCGAAGTGAGTT
Done.