Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007934.1 Hibiscus syriacus cultivar Beakdansim tig00110344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 290973
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 1 of 2
Found at i:712 original size:23 final size:22
Alignment explanation
Indices: 670--714 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
660 GTGTACATAC
*
670 AAATTATAAAATCAATAACATT
1 AAATTATAAAATCAAAAACATT
692 AAATTATTAGAAA-CAAAAACATT
1 AAATTA-TA-AAATCAAAAACATT
715 CATTTGAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 11 0.55
24 3 0.15
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.29
Consensus pattern (22 bp):
AAATTATAAAATCAAAAACATT
Found at i:3626 original size:8 final size:8
Alignment explanation
Indices: 3613--3653 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
3603 CTCATTTTCA
3613 GAGAATTT
1 GAGAATTT
3621 GAGAATTT
1 GAGAATTT
*
3629 -AGAGTTT
1 GAGAATTT
*
3636 GGGAATTT
1 GAGAATTT
3644 GAGAATTT
1 GAGAATTT
3652 GA
1 GA
3654 AAGCTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:3942 original size:128 final size:125
Alignment explanation
Indices: 3724--3965 Score: 439
Period size: 128 Copynumber: 1.9 Consensus size: 125
3714 TAATCGGAGT
3724 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCAGAGAATATGTTATCAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCAGAGAATATGTTATCAT
3789 TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
3849 ACTATTCACATGAATGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCATAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTA--TT-TCAGAGAATATGTTAT
3914 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
63 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
3966 AATCAGGTAA
Statistics
Matches: 112, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
125 43 0.38
127 2 0.02
128 67 0.60
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (125 bp):
ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTCAGAGAATATGTTATCAT
TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
Found at i:4239 original size:14 final size:14
Alignment explanation
Indices: 4220--4246 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4210 ACATAAGTTG
4220 ATTTTAATATATAC
1 ATTTTAATATATAC
4234 ATTTTAATATATA
1 ATTTTAATATATA
4247 TGTTAATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTTAATATATAC
Found at i:4404 original size:34 final size:34
Alignment explanation
Indices: 4366--4466 Score: 139
Period size: 34 Copynumber: 3.0 Consensus size: 34
4356 AAATTTAATG
*
4366 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
4400 TTAAATTTCGAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* *
4434 TTAAATTTTGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
4467 AACATTTATC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:5016 original size:21 final size:20
Alignment explanation
Indices: 4989--5058 Score: 95
Period size: 21 Copynumber: 3.4 Consensus size: 20
4979 GGTATAAAAC
4989 CCTGCGGGCTAGGAATGTAA
1 CCTGCGGGCTAGGAATGTAA
5009 CCTGGCGGGCTAGGAATGTAA
1 CCT-GCGGGCTAGGAATGTAA
* *
5030 CCCTGCGGGCTCGGAATATAA
1 -CCTGCGGGCTAGGAATGTAA
5051 CCCTGCGG
1 -CCTGCGG
5059 AGATGGCATA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
20 3 0.07
21 40 0.87
22 3 0.07
ACGTcount: A:0.21, C:0.26, G:0.34, T:0.19
Consensus pattern (20 bp):
CCTGCGGGCTAGGAATGTAA
Found at i:5069 original size:21 final size:21
Alignment explanation
Indices: 4986--5071 Score: 68
Period size: 21 Copynumber: 4.1 Consensus size: 21
4976 TATGGTATAA
* * *
4986 AACCCTGCGGGCTAGGAATGT
1 AACCCTGCGGGATCGGAATAT
* * *
5007 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGATCGGAATAT
*
5028 AACCCTGCGGGCTCGGAATAT
1 AACCCTGCGGGATCGGAATAT
*
5049 AACCCTGCGGAGAT-GGCATAT
1 AACCCTGCGG-GATCGGAATAT
5070 AA
1 AA
5072 ACTGGTGGGC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
20 3 0.05
21 50 0.86
22 5 0.09
ACGTcount: A:0.27, C:0.23, G:0.31, T:0.19
Consensus pattern (21 bp):
AACCCTGCGGGATCGGAATAT
Found at i:5086 original size:21 final size:21
Alignment explanation
Indices: 5062--5109 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
5052 CCTGCGGAGA
*
5062 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
5083 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
*
5104 GGGCAT
1 TGGCAT
5110 GTACCCCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.40, T:0.25
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:6873 original size:31 final size:33
Alignment explanation
Indices: 6831--6905 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 33
6821 ATAATTCTAA
* * *
6831 ATAAATAATAATTATATAAAT-ATTATTTTAAT
1 ATAAAAAATAATTATATAAATAAATATATTAAT
* *
6863 A-AAAAAATAA-TATTTACATAAATATATTAAT
1 ATAAAAAATAATTATATAAATAAATATATTAAT
6894 ATAAAAAATAAT
1 ATAAAAAATAAT
6906 AACTATTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 7 0.20
31 18 0.51
32 10 0.29
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (33 bp):
ATAAAAAATAATTATATAAATAAATATATTAAT
Found at i:6884 original size:34 final size:31
Alignment explanation
Indices: 6828--6907 Score: 97
Period size: 34 Copynumber: 2.5 Consensus size: 31
6818 TTAATAATTC
* *
6828 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAAATAATAATTACATAAATA-TA--TTAA
*
6862 TAAAAAAATAATATTTACATAAATATATTAA
1 TAAAAAAATAATAATTACATAAATATATTAA
6893 TATAAAAAATAATAA
1 TA-AAAAAATAATAA
6908 CTATTTAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 6 0.15
32 11 0.27
33 2 0.05
34 22 0.54
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (31 bp):
TAAAAAAATAATAATTACATAAATATATTAA
Found at i:6933 original size:32 final size:34
Alignment explanation
Indices: 6861--6936 Score: 88
Period size: 33 Copynumber: 2.3 Consensus size: 34
6851 TATTATTTTA
* *
6861 ATAAAAA-AATAATATTTACATAAATATATTAAT
1 ATAAAAATAATAATATTTACATAAATATACTAAC
6894 ATAAAAAATAATAACTATTTA-A-AAA-ATACTAAC
1 AT-AAAAATAATAA-TATTTACATAAATATACTAAC
6927 ATAAAAATAA
1 ATAAAAATAA
6937 ATTCTTACCA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
32 8 0.21
33 10 0.26
34 8 0.21
35 6 0.16
36 6 0.16
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (34 bp):
ATAAAAATAATAATATTTACATAAATATACTAAC
Found at i:7675 original size:12 final size:12
Alignment explanation
Indices: 7658--7691 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7648 CATTTGTATT
7658 AAAATAATAATA
1 AAAATAATAATA
*
7670 AAAATAATAGTA
1 AAAATAATAATA
*
7682 ATAATAATAA
1 AAAATAATAA
7692 AACAATAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (12 bp):
AAAATAATAATA
Found at i:7708 original size:21 final size:22
Alignment explanation
Indices: 7657--7715 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 22
7647 ACATTTGTAT
7657 TAAAATAATAATAAAAATAATAG
1 TAAAATAATAA-AAAAATAATAG
*
7680 TAATAATAATAAAACAATAA-AG
1 TAA-AATAATAAAAAAATAATAG
*
7702 TTAAATAA-AAAAAA
1 TAAAATAATAAAAAA
7716 CCTGGACAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
20 5 0.16
21 5 0.16
22 4 0.12
23 10 0.31
24 8 0.25
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (22 bp):
TAAAATAATAAAAAAATAATAG
Found at i:13527 original size:88 final size:88
Alignment explanation
Indices: 13395--13565 Score: 297
Period size: 88 Copynumber: 1.9 Consensus size: 88
13385 TTTTAATACG
*
13395 TTAAAATAAAATTAATCTTCAAATGGAATGGTGTCAAATATCACCATTCAATTTGATGATTACAT
1 TTAAAATAAAATTAATCTTCAAATGGAATGGTGCCAAATATCACCATTCAATTTGATGATTACAT
13460 TTATTTTATTTTAATTTATTAAA
66 TTATTTTATTTTAATTTATTAAA
** * *
13483 TTAAAATAAAATTAATCTTCAAATGGAATGGTGCCATGTGTCACCATTCAATTTGATGATTATAT
1 TTAAAATAAAATTAATCTTCAAATGGAATGGTGCCAAATATCACCATTCAATTTGATGATTACAT
13548 TTATTTTATTTTAATTTA
66 TTATTTTATTTTAATTTA
13566 GTCCTAATTT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 78 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (88 bp):
TTAAAATAAAATTAATCTTCAAATGGAATGGTGCCAAATATCACCATTCAATTTGATGATTACAT
TTATTTTATTTTAATTTATTAAA
Found at i:13668 original size:24 final size:24
Alignment explanation
Indices: 13623--13678 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
13613 GTGACCATTC
*
13623 AATTTGATT-ATTACATTTATTTT
1 AATTTAATTAATTACATTTATTTT
**
13646 CTTTTAATTAATTA-ATTTAATTTT
1 AATTTAATTAATTACATTT-ATTTT
13670 AATTTAATT
1 AATTTAATT
13679 TATGTGTCAC
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (24 bp):
AATTTAATTAATTACATTTATTTT
Found at i:14084 original size:21 final size:21
Alignment explanation
Indices: 14058--14153 Score: 122
Period size: 21 Copynumber: 4.6 Consensus size: 21
14048 GTTTCCAGAT
* **
14058 TCGCAACGCGAACTTCAACTA
1 TCGCAATGCGAACTTGGACTA
14079 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
14100 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
* *
14121 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTGGACTA
*
14142 TCACAATGCGAA
1 TCGCAATGCGAA
14154 TATGTAAATC
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
20 1 0.01
21 66 0.97
22 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:14111 original size:42 final size:42
Alignment explanation
Indices: 14058--14179 Score: 126
Period size: 42 Copynumber: 2.9 Consensus size: 42
14048 GTTTCCAGAT
* * *
14058 TCGCAACGCGAACTTCAACTATCGCAATGCGA-ACTTGGACTA
1 TCGCAATGCGAACTTCAACTATCGCAATGCGATA-GTCGACTA
**
14100 TCGCAATGCGAACTTGGACTATCGCAATGCGATAGTCGACTA
1 TCGCAATGCGAACTTCAACTATCGCAATGCGATAGTCGACTA
* *
14142 TCACAATGCGAA-TATGTAA--ATCGCAATGCGATAGTCGA
1 TCGCAATGCGAACT-T-CAACTATCGCAATGCGATAGTCGA
14180 AGTTCGCATT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
41 20 0.29
42 47 0.68
43 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (42 bp):
TCGCAATGCGAACTTCAACTATCGCAATGCGATAGTCGACTA
Found at i:14192 original size:21 final size:20
Alignment explanation
Indices: 14162--14323 Score: 99
Period size: 21 Copynumber: 8.6 Consensus size: 20
14152 AATATGTAAA
*
14162 TCGCAATGCGATAGTCGAAGT
1 TCGCATTGCGATAGTC-AAGT
14183 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGT-CAAGT
*
14204 TCGCATTGCGAT-TTACATA-T
1 TCGCATTGCGATAGT-CA-AGT
14224 TCGCATTGCG--A-T--AG-
1 TCGCATTGCGATAGTCAAGT
14238 TC-CATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGT-CAAGT
*
14258 TCGCATTGCGAT-TTACATA-T
1 TCGCATTGCGATAGT-CA-AGT
14278 TCGCATTGCG--A-T--AG-
1 TCGCATTGCGATAGTCAAGT
14292 TC-CATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGT-CAAGT
14312 TCGCATTGCGAT
1 TCGCATTGCGAT
14324 TTATTCCAAA
Statistics
Matches: 113, Mismatches: 5, Indels: 46
0.69 0.03 0.28
Matches are distributed among these distances:
13 14 0.12
14 6 0.05
15 2 0.02
16 2 0.02
18 2 0.02
19 4 0.04
20 32 0.28
21 50 0.44
22 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (20 bp):
TCGCATTGCGATAGTCAAGT
Found at i:14228 original size:20 final size:20
Alignment explanation
Indices: 14203--14289 Score: 73
Period size: 20 Copynumber: 4.7 Consensus size: 20
14193 ATAGTCCAAG
14203 TTCGCATTGCGATTTACATA
1 TTCGCATTGCGATTTACATA
14223 TTCGCATTGCG------ATA
1 TTCGCATTGCGATTTACATA
* * *
14237 GTC-CATTGCGATAGTCCA-A
1 TTCGCATTGCGAT-TTACATA
14256 GTTCGCATTGCGATTTACATA
1 -TTCGCATTGCGATTTACATA
14277 TTCGCATTGCGAT
1 TTCGCATTGCGAT
14290 AGTCCATTGC
Statistics
Matches: 53, Mismatches: 4, Indels: 20
0.69 0.05 0.26
Matches are distributed among these distances:
13 7 0.13
14 5 0.09
19 1 0.02
20 30 0.57
21 10 0.19
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.36
Consensus pattern (20 bp):
TTCGCATTGCGATTTACATA
Found at i:14245 original size:13 final size:13
Alignment explanation
Indices: 14227--14308 Score: 62
Period size: 13 Copynumber: 6.2 Consensus size: 13
14217 TACATATTCG
14227 CATTGCGATAGTC
1 CATTGCGATAGTC
14240 CATTGCGATAGTC
1 CATTGCGATAGTC
*
14253 CAAGTT-CGCATTG-C
1 C-A-TTGCG-ATAGTC
* * *
14267 GATTTAC-ATATTC
1 CA-TTGCGATAGTC
14280 GCATTGCGATAGTC
1 -CATTGCGATAGTC
14294 CATTGCGATAGTC
1 CATTGCGATAGTC
14307 CA
1 CA
14309 AGTTCGCATT
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
12 2 0.04
13 36 0.67
14 11 0.20
15 5 0.09
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (13 bp):
CATTGCGATAGTC
Found at i:14268 original size:54 final size:54
Alignment explanation
Indices: 14186--14326 Score: 282
Period size: 54 Copynumber: 2.6 Consensus size: 54
14176 TCGAAGTTCG
14186 CATTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTC
1 CATTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTC
14240 CATTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTC
1 CATTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTC
14294 CATTGCGATAGTCCAAGTTCGCATTGCGATTTA
1 CATTGCGATAGTCCAAGTTCGCATTGCGATTTA
14327 TTCCAAATTC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (54 bp):
CATTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTC
Found at i:14456 original size:6 final size:6
Alignment explanation
Indices: 14441--14483 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
14431 GACACGTATT
* *
14441 ACCACA ACCACG ACCACG ACCACG ATCACG ACC-CG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
14484 CGAGACGAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
5 10 0.29
6 24 0.71
ACGTcount: A:0.33, C:0.51, G:0.14, T:0.02
Consensus pattern (6 bp):
ACCACG
Found at i:15184 original size:41 final size:40
Alignment explanation
Indices: 15139--15273 Score: 125
Period size: 41 Copynumber: 3.3 Consensus size: 40
15129 TTTGGAATAA
*
15139 ATCGCAATGTGAATATGTAAATCGCAATGCGAACTTCGACT
1 ATCGCAATGCGAATATGTAAATCGCAATGCGAA-TTCGACT
* *
15180 ATCGCATTGCG-AT-T-TACATATTCGCATTGC-AATAGTCGACT
1 ATCGCAATGCGAATATGTA-A-A-TCGCAATGCGAAT--TCGACT
* *
15221 ATCGCAATGCGAAAATGTAAATCGCAATGCGATAGTCGACT
1 ATCGCAATGCGAATATGTAAATCGCAATGCGA-ATTCGACT
*
15262 ATCGCATTGCGA
1 ATCGCAATGCGA
15274 TTTACATATT
Statistics
Matches: 76, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
38 2 0.03
39 3 0.04
40 5 0.07
41 58 0.76
42 3 0.04
43 3 0.04
44 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (40 bp):
ATCGCAATGCGAATATGTAAATCGCAATGCGAATTCGACT
Found at i:15241 original size:82 final size:82
Alignment explanation
Indices: 15139--15298 Score: 268
Period size: 82 Copynumber: 2.0 Consensus size: 82
15129 TTTGGAATAA
* * *
15139 ATCGCAATGTGAATATGTAAATCGCAATGCGA-ACTTCGACTATCGCATTGCGATTTACATATTC
1 ATCGCAATGCGAAAATGTAAATCGCAATGCGATA-GTCGACTATCGCATTGCGATTTACATATTC
15203 GCATTGCAATAGTCGACT
65 GCATTGCAATAGTCGACT
15221 ATCGCAATGCGAAAATGTAAATCGCAATGCGATAGTCGACTATCGCATTGCGATTTACATATTCG
1 ATCGCAATGCGAAAATGTAAATCGCAATGCGATAGTCGACTATCGCATTGCGATTTACATATTCG
*
15286 CATTGCGATAGTC
66 CATTGCAATAGTC
15299 CAAGTTCGCA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
82 72 0.99
83 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (82 bp):
ATCGCAATGCGAAAATGTAAATCGCAATGCGATAGTCGACTATCGCATTGCGATTTACATATTCG
CATTGCAATAGTCGACT
Found at i:15267 original size:21 final size:21
Alignment explanation
Indices: 15159--15274 Score: 73
Period size: 21 Copynumber: 5.6 Consensus size: 21
15149 GAATATGTAA
*
15159 ATCGCAATGCGA-ACTTCGACT
1 ATCGCAATGCGATA-GTCGACT
* *
15180 ATCGCATTGCGAT--T-TACAT
1 ATCGCAATGCGATAGTCGAC-T
* *
15199 ATTCGCATTGCAATAGTCGACT
1 A-TCGCAATGCGATAGTCGACT
* * *
15221 ATCGCAATGCGAAAAT-GTA-A
1 ATCGCAATGCGATAGTCG-ACT
15241 ATCGCAATGCGATAGTCGACT
1 ATCGCAATGCGATAGTCGACT
*
15262 ATCGCATTGCGAT
1 ATCGCAATGCGAT
15275 TTACATATTC
Statistics
Matches: 73, Mismatches: 13, Indels: 18
0.70 0.12 0.17
Matches are distributed among these distances:
18 2 0.03
19 3 0.04
20 27 0.37
21 36 0.49
22 3 0.04
23 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (21 bp):
ATCGCAATGCGATAGTCGACT
Found at i:15287 original size:41 final size:40
Alignment explanation
Indices: 15174--15342 Score: 173
Period size: 41 Copynumber: 4.1 Consensus size: 40
15164 AATGCGAACT
* *
15174 TCGACTATCGCATTGCGATTTACATATTCGCATTGCAATAG
1 TCGACTATCGCATTGCGATGTACA-ATTCGCATTGCGATAG
* *
15215 TCGACTATCGCAATGCGAAAATGTA-AA-TCGCAATGCGATAG
1 TCGACTATCGCATTGCG---ATGTACAATTCGCATTGCGATAG
*
15256 TCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
1 TCGACTATCGCATTGCGATGTACA-ATTCGCATTGCGATAG
* * *
15297 TCCAAGT-TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAG
1 T-CGACTATCGCATTGCGAT-GTACAA-TTCGCATTGCGATAG
15339 TCGA
1 TCGA
15343 AGTTCGCGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
38 4 0.04
39 1 0.01
40 1 0.01
41 73 0.68
42 23 0.21
43 1 0.01
44 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (40 bp):
TCGACTATCGCATTGCGATGTACAATTCGCATTGCGATAG
Found at i:15308 original size:21 final size:21
Alignment explanation
Indices: 15282--15356 Score: 132
Period size: 21 Copynumber: 3.6 Consensus size: 21
15272 GATTTACATA
15282 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
15303 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
15324 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
*
15345 TTCGCGTTGCGA
1 TTCGCATTGCGA
15357 ATCTGGAAAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:18223 original size:15 final size:15
Alignment explanation
Indices: 18205--18256 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
18195 TTCAATGAAT
18205 TTTTAATTATTTTTA
1 TTTTAATTATTTTTA
**
18220 TTTTAATTATTCTGAA
1 TTTTAATTATT-TTTA
18236 TTATT--TTATTTTTA
1 TT-TTAATTATTTTTA
18250 TTTTAAT
1 TTTTAAT
18257 ATGACATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 2 0.07
14 4 0.14
15 17 0.59
16 4 0.14
17 2 0.07
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (15 bp):
TTTTAATTATTTTTA
Found at i:18227 original size:35 final size:31
Alignment explanation
Indices: 18185--18256 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 31
18175 TTTTTAATTT
*
18185 TTTTAATTTATTCAATGAATTTTTAATTATTTTTA
1 TTTTAATTTATTC--TGAATTATT--TTATTTTTA
18220 TTTTAA-TTATTCTGAATTATTTTATTTTTA
1 TTTTAATTTATTCTGAATTATTTTATTTTTA
18250 TTTTAAT
1 TTTTAAT
18257 ATGACATTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
30 15 0.43
32 8 0.23
34 6 0.17
35 6 0.17
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (31 bp):
TTTTAATTTATTCTGAATTATTTTATTTTTA
Found at i:32604 original size:2 final size:2
Alignment explanation
Indices: 32597--32629 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
32587 ATGAGTCCAT
32597 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32630 TAAATTTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33365 original size:6 final size:6
Alignment explanation
Indices: 33356--33381 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
33346 ATGCTTTCTT
33356 CTTGGA CTTGGA CTTGGA CTTGGA CT
1 CTTGGA CTTGGA CTTGGA CTTGGA CT
33382 GATGATGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.19, G:0.31, T:0.35
Consensus pattern (6 bp):
CTTGGA
Found at i:45053 original size:18 final size:18
Alignment explanation
Indices: 45027--45066 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
45017 AATATATATC
*
45027 TTAATTTAAATTCAAATA
1 TTAAATTAAATTCAAATA
*
45045 TTAAATTAAATTCATATA
1 TTAAATTAAATTCAAATA
45063 TTAA
1 TTAA
45067 TTTTTCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAAATTAAATTCAAATA
Found at i:45111 original size:30 final size:28
Alignment explanation
Indices: 45074--45201 Score: 161
Period size: 30 Copynumber: 4.4 Consensus size: 28
45064 TAATTTTTCA
45074 AAAATATATTTTATTTTTATCTTTAACTT
1 AAAATATATTTTATTTTTATC-TTAACTT
** *
45103 AGAAATATATACTATTTTTATTTTAACTT
1 A-AAATATATTTTATTTTTATCTTAACTT
45132 AAAATATATTTTA-TTTTATCTTAACTT
1 AAAATATATTTTATTTTTATCTTAACTT
45159 AAATAATATATTTTATTTTTATCTTAACTTTT
1 -AA-AATATATTTTATTTTTATCTTAAC--TT
45191 AAAA-ATATTTT
1 AAAATATATTTT
45202 TCTAACTAAC
Statistics
Matches: 87, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
27 13 0.15
28 12 0.14
29 27 0.31
30 31 0.36
31 2 0.02
32 2 0.02
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (28 bp):
AAAATATATTTTATTTTTATCTTAACTT
Found at i:45176 original size:57 final size:59
Alignment explanation
Indices: 45074--45201 Score: 174
Period size: 57 Copynumber: 2.2 Consensus size: 59
45064 TAATTTTTCA
* *
45074 AAAATATATTTTATTTTTATCTTTAACTTAGAAATATATACTATTTTTATTTTAAC-TT
1 AAAATATATTTTATTTTTATCTTTAACTTAAAAATATATACTATTTTTATCTTAACTTT
**
45132 AAAATATATTTTA-TTTTATC-TTAACTTAAATAATATATTTTATTTTTATCTTAACTTTT
1 AAAATATATTTTATTTTTATCTTTAACTTAAA-AATATATACTATTTTTATCTTAAC-TTT
45191 AAAA-ATATTTT
1 AAAATATATTTT
45202 TCTAACTAAC
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
56 9 0.14
57 28 0.44
58 20 0.32
59 6 0.10
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (59 bp):
AAAATATATTTTATTTTTATCTTTAACTTAAAAATATATACTATTTTTATCTTAACTTT
Found at i:49774 original size:37 final size:38
Alignment explanation
Indices: 49696--49779 Score: 125
Period size: 38 Copynumber: 2.2 Consensus size: 38
49686 CTAAACTCGA
* * *
49696 ACCCGACCCGACCGGAATATCACACTTAAAAAAATCCG
1 ACCCGACCCAACCCGAATATCACACTTAAAAAAACCCG
*
49734 ACCCGACTCAACCCGAATATCACACTT-AAAAAACCCG
1 ACCCGACCCAACCCGAATATCACACTTAAAAAAACCCG
49771 ACCCGACCC
1 ACCCGACCC
49780 GAACAAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
37 17 0.41
38 24 0.59
ACGTcount: A:0.38, C:0.39, G:0.11, T:0.12
Consensus pattern (38 bp):
ACCCGACCCAACCCGAATATCACACTTAAAAAAACCCG
Found at i:49970 original size:254 final size:244
Alignment explanation
Indices: 49401--49986 Score: 895
Period size: 259 Copynumber: 2.3 Consensus size: 244
49391 ATATAAGGTA
* * *
49401 AAATTATATATTTTTTTCGGGTCGGTCCGGTTTTTTTCACCCTAAACCCGAACCTGACCCGAATA
1 AAATTATATA-TATTTTCGGGTCGGTCCGGTTTTTTTCACCCTAAACCCAAACCCGACCCGAATA
49466 TCACACTTAAAAAAACCTGACCCGACTCAACCCGAATATCACACTTAAAAAACCCGACCCGAACA
65 TCACACTTAAAAAAACCTGACCCGACTCAACCCGAATATCACACTTAAAAAACCCGACCCGAACA
49531 AAATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAATCCGACCCGACCCGAAATAAT
130 AAATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAATCCGACCCGACCCGAAATAAT
49596 AAAAAAATATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCGACCC
195 AAAAAAATATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCGACCC
* * *
49646 AAATTATATATATTTTTGGGTCGGTCCGGTTTTTTTCACCCTAAACTCGAACCCGACCCGACCGG
1 AAATTATATATATTTTCGGGTCGGTCCGGTTTTTTTCACCCTAAAC-CCAA----ACCCGACCCG
49711 AATATCACACTTAAAAAAATCC-GACCCGACTCAACCCGAATATCACACTTAAAAAACCCGACCC
61 AATATCACACTTAAAAAAA-CCTGACCCGACTCAACCCGAATATCACACTT-AAAAA----ACCC
49775 GACCCGAACAAAATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAATCCAACCCGAC
120 GACCCGAACAAAATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAAT-----CCGAC
* * * *
49840 CTGACCCGAAATAATAAAAAATTATTTTTATTTAATAAAAACAGTGACTTAATCTGACCCGACCT
180 CCGACCCGAAATAATAAAAAAATATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCGACCC
* * *
49905 GAATTATATATATTTTCGGGTCGGTCCGGTTTTTTTCACTCTAAACCTAAACCCGACCCGAATAT
1 AAATTATATATATTTTCGGGTCGGTCCGGTTTTTTTCACCCTAAACCCAAACCCGACCCGAATAT
49970 CACACTTAAAAAAACCT
66 CACACTTAAAAAAACCT
49987 TATCCGACCC
Statistics
Matches: 309, Mismatches: 15, Indels: 25
0.89 0.04 0.07
Matches are distributed among these distances:
244 34 0.11
245 12 0.04
249 55 0.18
250 7 0.02
253 2 0.01
254 87 0.28
258 3 0.01
259 109 0.35
ACGTcount: A:0.37, C:0.27, G:0.12, T:0.25
Consensus pattern (244 bp):
AAATTATATATATTTTCGGGTCGGTCCGGTTTTTTTCACCCTAAACCCAAACCCGACCCGAATAT
CACACTTAAAAAAACCTGACCCGACTCAACCCGAATATCACACTTAAAAAACCCGACCCGAACAA
AATAAAGTTTCATCCGACCCGACCCGAATATATGAATTAGAAATCCGACCCGACCCGAAATAATA
AAAAAATATTTTTATTTAATAAAAACAGTGACTTAATCCGACCCGACCC
Found at i:54766 original size:23 final size:21
Alignment explanation
Indices: 54722--54768 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
54712 TTAAATATTA
* *
54722 TTTTTTTAAAATAATTATGAT
1 TTTTTTTAAAAAAATTAAGAT
54743 TTTTATTTAAAAAAATTAGAGAT
1 TTTT-TTTAAAAAAATTA-AGAT
54766 TTT
1 TTT
54769 GAATTGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 12 0.55
23 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.53
Consensus pattern (21 bp):
TTTTTTTAAAAAAATTAAGAT
Found at i:57728 original size:56 final size:55
Alignment explanation
Indices: 57659--57837 Score: 186
Period size: 56 Copynumber: 3.2 Consensus size: 55
57649 TTCTATTTTT
* *
57659 TAGATATATTCGATTCTGAGGCTCTTATTTTTATGATTCTTAAT-ATCAACAACTAA
1 TAGATATATTCGATT-TGAGAC-CTTATTTTTATGATTATTAATGATCAACAACTAA
* * * *
57715 TATATATACTCGATTTCGAGACCTTTATTTTTAT-ACTTATTAATGA-CAACCACTGA
1 TAGATATATTCGATTT-GAGACC-TTATTTTTATGA-TTATTAATGATCAACAACTAA
* **
57771 TAGATATATTCGATTTTAAGACCCTTATTTTTATGCCTATTAATGAT-AACAACTAA
1 TAGATATATTCGA-TTTGAGA-CCTTATTTTTATGATTATTAATGATCAACAACTAA
57827 TAGATATATTC
1 TAGATATATTC
57838 AATTCAATAC
Statistics
Matches: 102, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
55 3 0.03
56 93 0.91
57 6 0.06
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.42
Consensus pattern (55 bp):
TAGATATATTCGATTTGAGACCTTATTTTTATGATTATTAATGATCAACAACTAA
Found at i:62769 original size:31 final size:31
Alignment explanation
Indices: 62733--62791 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
62723 AACTTAAAAG
* *
62733 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
62764 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
62792 CCATACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:63466 original size:20 final size:20
Alignment explanation
Indices: 63418--63479 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 20
63408 AATTTAAATC
*
63418 AAAATAATTAAAATAA-ATAT
1 AAAATAATT-TAATAATATAT
63438 AAAAT--TTTAATAATATAT
1 AAAATAATTTAATAATATAT
63456 AAAATAATTT-AT-ATGATAT
1 AAAATAATTTAATAAT-ATAT
63475 AAAAT
1 AAAAT
63480 TTATAAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
17 5 0.14
18 13 0.35
19 11 0.30
20 8 0.22
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
AAAATAATTTAATAATATAT
Found at i:66721 original size:18 final size:18
Alignment explanation
Indices: 66697--66745 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
66687 CTAATTGAAT
66697 AAAATATATTTAATGATTTA
1 AAAATATATTTAAT-A-TTA
*
66717 AATATATATTTAATATT-
1 AAAATATATTTAATATTA
66734 AAAATAT-TTTAA
1 AAAATATATTTAA
66746 AGTTAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 5 0.19
17 6 0.22
18 2 0.07
19 1 0.04
20 13 0.48
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
AAAATATATTTAATATTA
Found at i:66725 original size:20 final size:19
Alignment explanation
Indices: 66696--66740 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
66686 TCTAATTGAA
66696 TAAA-ATATATTTAATGATT
1 TAAATATATATTTAAT-ATT
66715 TAAATATATATTTAATATT
1 TAAATATATATTTAATATT
*
66734 AAAATAT
1 TAAATAT
66741 TTTAAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
TAAATATATATTTAATATT
Found at i:66799 original size:30 final size:29
Alignment explanation
Indices: 66743--66826 Score: 82
Period size: 30 Copynumber: 2.8 Consensus size: 29
66733 TAAAATATTT
* *
66743 TAAAGTTAATATAAGAATAAAATATATTTAA
1 TAAA-TTAAGATAA-AATATAATATATTTAA
* *
66774 TAATTTAA-AGTAATAATATAATATATTTAT
1 TAAATTAAGA-TAA-AATATAATATATTTAA
66804 TAAATTAAGATAAAATAT-ATATA
1 TAAATTAAGATAAAATATAATATA
66827 CTATGAAATT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
28 5 0.11
29 6 0.13
30 31 0.67
31 4 0.09
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (29 bp):
TAAATTAAGATAAAATATAATATATTTAA
Found at i:66870 original size:33 final size:32
Alignment explanation
Indices: 66832--66894 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
66822 ATATACTATG
66832 AAATTTTAAAATAAAAATAAAACATATTTTTGA
1 AAATTTT-AAATAAAAATAAAACATATTTTTGA
* **
66865 AAATTTTAAATTAAGTTAAAACATATTTTT
1 AAATTTTAAATAAAAATAAAACATATTTTT
66895 TATTGAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 20 0.74
33 7 0.26
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.41
Consensus pattern (32 bp):
AAATTTTAAATAAAAATAAAACATATTTTTGA
Found at i:67079 original size:30 final size:30
Alignment explanation
Indices: 67036--67105 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
67026 TTAACCCATG
67036 GTGACCATATCTTAATTAAATAAAACGAAA
1 GTGACCATATCTTAATTAAATAAAACGAAA
* * *
67066 GTGATCATCTCTTAATTAAATAAAATGAAA
1 GTGACCATATCTTAATTAAATAAAACGAAA
*
67096 GTTACCATAT
1 GTGACCATAT
67106 ATTATATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (30 bp):
GTGACCATATCTTAATTAAATAAAACGAAA
Found at i:70924 original size:7 final size:7
Alignment explanation
Indices: 70911--70953 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
70901 GTCAAAGAAA
70911 GTCAACG
1 GTCAACG
*
70918 ATCAACG
1 GTCAACG
70925 GTCAACG
1 GTCAACG
70932 GTCAACG
1 GTCAACG
*
70939 GTC--GG
1 GTCAACG
70944 GTCAACG
1 GTCAACG
70951 GTC
1 GTC
70954 GGGTCGGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 4 0.13
7 26 0.87
ACGTcount: A:0.26, C:0.28, G:0.30, T:0.16
Consensus pattern (7 bp):
GTCAACG
Found at i:70948 original size:12 final size:12
Alignment explanation
Indices: 70931--70958 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
70921 AACGGTCAAC
70931 GGTCAACGGTCG
1 GGTCAACGGTCG
70943 GGTCAACGGTCG
1 GGTCAACGGTCG
70955 GGTC
1 GGTC
70959 GGGTTGGTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.25, G:0.43, T:0.18
Consensus pattern (12 bp):
GGTCAACGGTCG
Found at i:70981 original size:9 final size:9
Alignment explanation
Indices: 70969--71019 Score: 57
Period size: 9 Copynumber: 5.3 Consensus size: 9
70959 GGGTTGGTCG
*
70969 GGTCAGACC
1 GGTCAAACC
70978 GGTCAAACC
1 GGTCAAACC
70987 GGTTCGAAACC
1 GG-TC-AAACC
*
70998 GGTCAAACT
1 GGTCAAACC
71007 GGTCAGAACC
1 GGTCA-AACC
71017 GGT
1 GGT
71020 TGAAAACTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 19 0.53
10 10 0.28
11 7 0.19
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.16
Consensus pattern (9 bp):
GGTCAAACC
Found at i:71038 original size:20 final size:21
Alignment explanation
Indices: 71002--71040 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
70992 GAAACCGGTC
71002 AAACTGGTCAGAACCGGTTGA
1 AAACTGGTCAGAACCGGTTGA
*
71023 AAACTGGTTA-AACCGGTT
1 AAACTGGTCAGAACCGGTT
71041 TCCAGCAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (21 bp):
AAACTGGTCAGAACCGGTTGA
Found at i:79487 original size:21 final size:20
Alignment explanation
Indices: 79452--79490 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
79442 ATGCTATGGG
*
79452 TTTTATTATTATTTATTTGT
1 TTTTATGATTATTTATTTGT
79472 TTTTATGATCTATTTATTT
1 TTTTATGAT-TATTTATTT
79491 TCAGTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTTATGATTATTTATTTGT
Found at i:81125 original size:89 final size:89
Alignment explanation
Indices: 81017--81187 Score: 281
Period size: 89 Copynumber: 1.9 Consensus size: 89
81007 AAATCGATAC
*
81017 GGTTTTTTCACCTAACCAAAAAA-CTAGATTTTAAAAAAATCGGTTCGGATTCTAACCGGTTTGG
1 GGTTTTTTCACCTAACCAAAAAATC-AGATTTTAAAAAAACCGGTTCGGATTCTAACCGGTTTGG
* *
81081 ATGGTCGGATGGTGTAACCCGATCT
65 AGGGCCGGATGGTGTAACCCGATCT
* *
81106 GGTTTTTTCACCTAGCCAAAAAATCGGATTTTAAAAAAACCGGTTCGGATTCTAACCGGTTTGGA
1 GGTTTTTTCACCTAACCAAAAAATCAGATTTTAAAAAAACCGGTTCGGATTCTAACCGGTTTGGA
81171 GGGCCGGATGGTGTAAC
66 GGGCCGGATGGTGTAAC
81188 TGGTTTCGGT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
89 75 0.99
90 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (89 bp):
GGTTTTTTCACCTAACCAAAAAATCAGATTTTAAAAAAACCGGTTCGGATTCTAACCGGTTTGGA
GGGCCGGATGGTGTAACCCGATCT
Found at i:81234 original size:15 final size:16
Alignment explanation
Indices: 81202--81232 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
81192 TTCGGTTTGA
81202 AAAAAACCGATTTTTT
1 AAAAAACCGATTTTTT
81218 AAAAAACCGATTTTT
1 AAAAAACCGATTTTT
81233 AACCTGGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (16 bp):
AAAAAACCGATTTTTT
Found at i:81752 original size:8 final size:8
Alignment explanation
Indices: 81739--81763 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
81729 TATATTTTTT
81739 AAAATAAA
1 AAAATAAA
81747 AAAATAAA
1 AAAATAAA
81755 AAAATAAA
1 AAAATAAA
81763 A
1 A
81764 TACATACGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:82395 original size:2 final size:2
Alignment explanation
Indices: 82388--82427 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
82378 TTTCAACATA
82388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82428 TAAATGAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82537 original size:25 final size:26
Alignment explanation
Indices: 82491--82546 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
82481 TAATAAGTTA
*
82491 ATATAAAATATTTTCAAGTTAA-TAT
1 ATATAAAATATTATCAAGTTAAGTAT
* * *
82516 ATATAGAATATTATGAATTTAAGTAT
1 ATATAAAATATTATCAAGTTAAGTAT
*
82542 TTATA
1 ATATA
82547 CATTGAGATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.45
Consensus pattern (26 bp):
ATATAAAATATTATCAAGTTAAGTAT
Found at i:94909 original size:28 final size:28
Alignment explanation
Indices: 94878--94931 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
94868 CTTCTTGGTA
94878 AACGAATTGAGTTAATCTTTTAGTTAGT
1 AACGAATTGAGTTAATCTTTTAGTTAGT
94906 AACGAATTGAGTTAATCTTTTAGTTA
1 AACGAATTGAGTTAATCTTTTAGTTA
94932 TGAAAGATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (28 bp):
AACGAATTGAGTTAATCTTTTAGTTAGT
Found at i:98868 original size:3 final size:3
Alignment explanation
Indices: 98840--98914 Score: 75
Period size: 3 Copynumber: 26.0 Consensus size: 3
98830 GGGACTGTTG
* * * * *
98840 TAA TAT TAA TAA -AA T-A TAT TAT TAA TAA TAA TAA TTA TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
98886 TAA TAA TAA T-A TAA TAA TAC TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
98915 AATGAGTAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
2 6 0.10
3 55 0.90
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:99316 original size:20 final size:20
Alignment explanation
Indices: 99291--99353 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
99281 TTCAGATGAG
99291 TTCTTCTCATTATGAACTTC
1 TTCTTCTCATTATGAACTTC
* *
99311 TTCTTCTTCA-GATG-A---G
1 TTCTTC-TCATTATGAACTTC
99327 TTCTTCTCATTATGAACTTC
1 TTCTTCTCATTATGAACTTC
99347 TTCTTCT
1 TTCTTCT
99354 TCTTCTTCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
15 3 0.09
16 9 0.27
17 1 0.03
19 1 0.03
20 16 0.48
21 3 0.09
ACGTcount: A:0.17, C:0.24, G:0.08, T:0.51
Consensus pattern (20 bp):
TTCTTCTCATTATGAACTTC
Found at i:99410 original size:40 final size:40
Alignment explanation
Indices: 99276--99466 Score: 304
Period size: 40 Copynumber: 4.8 Consensus size: 40
99266 TTATGAATCT
99276 CTTCTTTCAGATGAGTTCTTCTCATTATGAA---CTTCTT-
1 CTTC-TTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTC
99313 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTC
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTC
99353 TTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTC
1 --CTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTC
99395 CTTCTTCAGATGAGTTCTTCTCATTATGAACTT-TCTCTTC
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTCT-TCTTC
99435 CTTCTTCAGATGAGTTC-TCTCATTATGAACTT
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTT
99467 TCTGGAAAAG
Statistics
Matches: 147, Mismatches: 0, Indels: 12
0.92 0.00 0.08
Matches are distributed among these distances:
36 26 0.18
37 4 0.03
39 22 0.15
40 55 0.37
42 40 0.27
ACGTcount: A:0.18, C:0.24, G:0.10, T:0.48
Consensus pattern (40 bp):
CTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTC
Found at i:99735 original size:112 final size:113
Alignment explanation
Indices: 99409--99832 Score: 733
Period size: 112 Copynumber: 3.8 Consensus size: 113
99399 TTCAGATGAG
99409 TTCTTCTCATTATGAACTTTC-TCTTCCTTCTTCAGATGAGTTC-TCTCATTATGAAC-TT-TCT
1 TTCTTCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCT
*
99470 GGAAAAGCTGATCCATCGA-TGATGGATTTGAGCATAAGGTTGAACAAA
65 GGAAAAGCTGATCCATCAAGTGATGGATTTGAGCATAAGGTTGAACAAA
99518 TTCTTCTCATTATG-ATTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
99581 GAAAAGCTGATCCATCAAGTGATGGA-TTGAGCATAAGGTTGAACAAA
66 GAAAAGCTGATCCATCAAGTGATGGATTTGAGCATAAGGTTGAACAAA
* * *
99628 TTCTTCTCATTATGAATTTCTTCTTCATCCTTCAGATGAATTCTTCTCATTATGAAC-TTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
99692 GAAAAGCTGATCCATCAAGTGATGGATTTGAGCATAAGGTTGAACAAA
66 GAAAAGCTGATCCATCAAGTGATGGATTTGAGCATAAGGTTGAACAAA
99740 TTCTTCTCATTATGAATTTCTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
99804 GAAAAGCTGATCCATCAAGTGATGGATTT
66 GAAAAGCTGATCCATCAAGTGATGGATTT
99833 AAATCTTGCT
Statistics
Matches: 299, Mismatches: 7, Indels: 15
0.93 0.02 0.05
Matches are distributed among these distances:
107 19 0.06
108 20 0.07
109 16 0.05
110 56 0.19
111 79 0.26
112 109 0.36
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (113 bp):
TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
GAAAAGCTGATCCATCAAGTGATGGATTTGAGCATAAGGTTGAACAAA
Found at i:99799 original size:223 final size:219
Alignment explanation
Indices: 99409--99831 Score: 749
Period size: 223 Copynumber: 1.9 Consensus size: 219
99399 TTCAGATGAG
* * *
99409 TTCTTCTCATTATGAACTTTCTCTTCCTTCTTCAGATGAGTTCTCTCATTATGAACTTTCTGGAA
1 TTCTTCTCATTATGAACTTTCTCTTCATCCTTCAGATGAATTCTCTCATTATGAACTTTCTGGAA
*
99474 AAGCTGATCCATCGATGATGGATTTGAGCATAAGGTTGAACAAATTCTTCTCATTATGATTTCTT
66 AAGCTGATCCATCAATGATGGATTTGAGCATAAGGTTGAACAAATTCTTCTCATTATGATTTCTT
99539 CTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGAT
131 CTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGAT
99604 GGATTGAGCATAAGGTTGAACAAA
196 GGATTGAGCATAAGGTTGAACAAA
99628 TTCTTCTCATTATGAA-TTTCTTCTTCATCCTTCAGATGAATTCTTCTCATTATGAACTTCTCTG
1 TTCTTCTCATTATGAACTTTC-TCTTCATCCTTCAGATGAATTC-TCTCATTATGAACTT-TCTG
99692 GAAAAGCTGATCCATCAAGTGATGGATTTGAGCATAAGGTTGAACAAATTCTTCTCATTATGAAT
63 GAAAAGCTGATCCATCAA-TGATGGATTTGAGCATAAGGTTGAACAAATTCTTCTCATTATG-AT
*
99757 TTCTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAA
126 TTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAA
99822 GTGATGGATT
191 GTGATGGATT
99832 TAAATCTTGC
Statistics
Matches: 194, Mismatches: 5, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
218 4 0.02
219 35 0.18
220 15 0.08
221 21 0.11
222 43 0.22
223 76 0.39
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (219 bp):
TTCTTCTCATTATGAACTTTCTCTTCATCCTTCAGATGAATTCTCTCATTATGAACTTTCTGGAA
AAGCTGATCCATCAATGATGGATTTGAGCATAAGGTTGAACAAATTCTTCTCATTATGATTTCTT
CTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGAT
GGATTGAGCATAAGGTTGAACAAA
Found at i:100259 original size:31 final size:31
Alignment explanation
Indices: 100221--100283 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
100211 ATAGTATTAG
*
100221 ATAAATTTATTAA-TAATTTTATAATCTTTTA
1 ATAAATTTATAAAGT-ATTTTATAATCTTTTA
*
100252 ATAAATTTATAAAGTATTTTATAATTTTTTA
1 ATAAATTTATAAAGTATTTTATAATCTTTTA
100283 A
1 A
100284 ACTTTATTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (31 bp):
ATAAATTTATAAAGTATTTTATAATCTTTTA
Found at i:101024 original size:17 final size:17
Alignment explanation
Indices: 100982--101029 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
100972 TAAAGTTTAA
100982 AAAATTATAAAATACTAT
1 AAAATTAT-AAATACTAT
* * *
101000 TAATTTATAAATATTAT
1 AAAATTATAAATACTAT
*
101017 AAAATTATTAATA
1 AAAATTATAAATA
101030 AATTTATCTA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 18 0.75
18 6 0.25
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
AAAATTATAAATACTAT
Found at i:104768 original size:40 final size:42
Alignment explanation
Indices: 104708--104790 Score: 107
Period size: 40 Copynumber: 2.0 Consensus size: 42
104698 TCTGTTAAAT
* **
104708 TAAATAAATAAATACAAATAATT-TTT-TTATATTTATTTAA
1 TAAATAAATAAACACAAATAATTATTTAAGATATTTATTTAA
**
104748 TAAATAAATAAACATGAATAATTATTTAAGATATTTATTTAA
1 TAAATAAATAAACACAAATAATTATTTAAGATATTTATTTAA
104790 T
1 T
104791 TCATTTATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
40 20 0.56
41 3 0.08
42 13 0.36
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (42 bp):
TAAATAAATAAACACAAATAATTATTTAAGATATTTATTTAA
Found at i:105596 original size:15 final size:15
Alignment explanation
Indices: 105576--105604 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
105566 TCGACCACCT
105576 CCATATCCTCCGCCA
1 CCATATCCTCCGCCA
105591 CCATATCCTCCGCC
1 CCATATCCTCCGCC
105605 GTTACGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.55, G:0.07, T:0.21
Consensus pattern (15 bp):
CCATATCCTCCGCCA
Found at i:106030 original size:14 final size:13
Alignment explanation
Indices: 105993--106041 Score: 55
Period size: 14 Copynumber: 3.8 Consensus size: 13
105983 ATTAAAAGAG
105993 AACAGTAACAAG-
1 AACAGTAACAAGT
* *
106005 AAGAGTATCAAGT
1 AACAGTAACAAGT
106018 AACAAGTAACAAGT
1 AAC-AGTAACAAGT
*
106032 AGCAGTAACA
1 AACAGTAACA
106042 CAAAAGAACA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
12 10 0.33
13 9 0.30
14 11 0.37
ACGTcount: A:0.53, C:0.14, G:0.18, T:0.14
Consensus pattern (13 bp):
AACAGTAACAAGT
Found at i:107578 original size:20 final size:19
Alignment explanation
Indices: 107555--107760 Score: 132
Period size: 20 Copynumber: 10.4 Consensus size: 19
107545 CCTAGTTTCC
107555 AAATTCGCAACGCGAA-TT
1 AAATTCGCAACGCGAAGTT
* *
107573 ATAAATCGCAACACAGAAGTT
1 A-AATTCGCAACGC-GAAGTT
* * *
107594 AAATTCGTAACACAGAAGTC
1 AAATTCGCAACGC-GAAGTT
*
107614 AAATTCGCAACGCGATAGTC
1 AAATTCGCAACGCGA-AGTT
* *
107634 AAATTCGCAACACTGAAGTC
1 AAATTCGCAACGC-GAAGTT
* *
107654 AAATTCGCAACGCAAATCTGT
1 AAATTCGCAACGCGAA-GT-T
*
107675 AAA-TCGCAACGCGAATTTTT
1 AAATTCGCAACGCGAA--GTT
* *
107695 AAA-TCGCAACACAGAAGTC
1 AAATTCGCAACGC-GAAGTT
* *
107714 AAATTCGCAACAC-ATATGTC
1 AAATTCGCAACGCGA-A-GTT
107734 AAATTCGCAACGCGATAGTT
1 AAATTCGCAACGCGA-AGTT
107754 AAATTCG
1 AAATTCG
107761 TAATACTAAA
Statistics
Matches: 156, Mismatches: 19, Indels: 24
0.78 0.10 0.12
Matches are distributed among these distances:
18 2 0.01
19 19 0.12
20 119 0.76
21 16 0.10
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATTCGCAACGCGAAGTT
Found at i:107624 original size:40 final size:40
Alignment explanation
Indices: 107578--107760 Score: 162
Period size: 40 Copynumber: 4.6 Consensus size: 40
107568 GAATTATAAA
* *
107578 TCGCAACACAGAAGTTAAATTCGTAACACAGAAGTCAAAT
1 TCGCAACGCAGAAGTTAAATTCGCAACACAGAAGTCAAAT
* *
107618 TCGCAACGC-GATAGTCAAATTCGCAACACTGAAGTCAAAT
1 TCGCAACGCAGA-AGTTAAATTCGCAACACAGAAGTCAAAT
* * * *
107658 TCGCAACGCA-AATCTGTAAA-TCGCAACGC-GAATTTTTAAA-
1 TCGCAACGCAGAA-GT-TAAATTCGCAACACAGAA--GTCAAAT
* * * *
107698 TCGCAACACAGAAGTCAAATTCGCAACACATATGTCAAAT
1 TCGCAACGCAGAAGTTAAATTCGCAACACAGAAGTCAAAT
107738 TCGCAACGC-GATAGTTAAATTCG
1 TCGCAACGCAGA-AGTTAAATTCG
107761 TAATACTAAA
Statistics
Matches: 113, Mismatches: 19, Indels: 22
0.73 0.12 0.14
Matches are distributed among these distances:
39 15 0.13
40 88 0.78
41 10 0.09
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (40 bp):
TCGCAACGCAGAAGTTAAATTCGCAACACAGAAGTCAAAT
Found at i:107658 original size:60 final size:59
Alignment explanation
Indices: 107554--107757 Score: 231
Period size: 60 Copynumber: 3.4 Consensus size: 59
107544 ACCTAGTTTC
* *
107554 CAAATTCGCAACGCGAAT--TATAAATCGCAACACAGAAGTTAAATTCGTAACACAGAAGT
1 CAAATTCGCAACGCGAATAGT-TAAATCGCAACACAGAAGTCAAATTCGCAACACA-AAGT
* * *
107613 CAAATTCGCAACGCG-ATAGTCAAATTCGCAACACTGAAGTCAAATTCGCAACGCAAA-T
1 CAAATTCGCAACGCGAATAGTTAAA-TCGCAACACAGAAGTCAAATTCGCAACACAAAGT
** *
107671 CTGTAAA-TCGCAACGCGAATTTTTAAATCGCAACACAGAAGTCAAATTCGCAACACATATGT
1 C---AAATTCGCAACGCGAATAGTTAAATCGCAACACAGAAGTCAAATTCGCAACACA-AAGT
107733 CAAATTCGCAACGCG-ATAGTTAAAT
1 CAAATTCGCAACGCGAATAGTTAAAT
107758 TCGTAATACT
Statistics
Matches: 122, Mismatches: 13, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
58 4 0.03
59 31 0.25
60 75 0.61
61 10 0.08
62 2 0.02
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.22
Consensus pattern (59 bp):
CAAATTCGCAACGCGAATAGTTAAATCGCAACACAGAAGTCAAATTCGCAACACAAAGT
Found at i:108018 original size:14 final size:15
Alignment explanation
Indices: 107999--108036 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
107989 TCCCCATCTC
107999 TAATTTTTTT-TACA
1 TAATTTTTTTCTACA
*
108013 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
108029 TAATTTTT
1 TAATTTTT
108037 CAATGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:108652 original size:12 final size:12
Alignment explanation
Indices: 108631--108664 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
108621 ACCACATTTC
*
108631 CAATACCAAACA
1 CAATATCAAACA
108643 CAATATCAAACA
1 CAATATCAAACA
*
108655 CAATCTCAAA
1 CAATATCAAA
108665 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:108842 original size:24 final size:24
Alignment explanation
Indices: 108791--108844 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
108781 GTATTCAAAA
* *
108791 TTTGATTTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCAGAC
* *
108815 TTTGATCTTGGTCAATACTCAGAT
1 TTTGATCTTGGTCAATACCCAGAC
108839 TTTGAT
1 TTTGAT
108845 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.43
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCAGAC
Found at i:111119 original size:6 final size:6
Alignment explanation
Indices: 111108--111142 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
111098 AAGCAAAAGG
* *
111108 AAATCA AAATCA AAATCG CAATCA AAATCA AAATC
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATC
111143 CCAATCACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.60, C:0.20, G:0.03, T:0.17
Consensus pattern (6 bp):
AAATCA
Found at i:111132 original size:18 final size:18
Alignment explanation
Indices: 111109--111149 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
111099 AGCAAAAGGA
*
111109 AATCAAAATCAAAATCGC
1 AATCAAAATCAAAATCCC
111127 AATCAAAATCAAAATCCC
1 AATCAAAATCAAAATCCC
111145 AATCA
1 AATCA
111150 CAACCGGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.56, C:0.24, G:0.02, T:0.17
Consensus pattern (18 bp):
AATCAAAATCAAAATCCC
Found at i:111609 original size:14 final size:14
Alignment explanation
Indices: 111592--111628 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
111582 ATCAAATTAA
111592 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
111606 ACAAATCTACTTTT
1 ACAAATCAACTTTT
111620 ACAAATCAA
1 ACAAATCAA
111629 TTAAACAAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:113106 original size:21 final size:21
Alignment explanation
Indices: 113082--113143 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
113072 ATGATGACAT
* *
113082 GGGCCTCTTGAACGGTGGGAG
1 GGGCCTCTTGAACGATAGGAG
* *
113103 GGGCCTCTTAAACGATATGAG
1 GGGCCTCTTGAACGATAGGAG
* *
113124 GAGCCTCTTGAACAATAGGA
1 GGGCCTCTTGAACGATAGGA
113144 TGCGTCTCTT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGCCTCTTGAACGATAGGAG
Found at i:115252 original size:20 final size:20
Alignment explanation
Indices: 115209--115252 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
115199 GCGTTGTGAT
* * * *
115209 TTTCTCGTTGCGATTTTCAT
1 TTTCGCGTTGCGAATTTAAG
115229 TTTCGCGTTGCGAATTTAAG
1 TTTCGCGTTGCGAATTTAAG
115249 TTTC
1 TTTC
115253 AGAAACTACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.18, G:0.18, T:0.50
Consensus pattern (20 bp):
TTTCGCGTTGCGAATTTAAG
Found at i:115613 original size:22 final size:22
Alignment explanation
Indices: 115583--115633 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
115573 GATGGAGATA
115583 GACGGATTTCACCGGAGATGGG
1 GACGGATTTCACCGGAGATGGG
* **
115605 GATGGATTTCGTCGGAGATGGG
1 GACGGATTTCACCGGAGATGGG
115627 GACGGAT
1 GACGGAT
115634 GTCGCCGTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.22, C:0.14, G:0.43, T:0.22
Consensus pattern (22 bp):
GACGGATTTCACCGGAGATGGG
Found at i:115766 original size:19 final size:20
Alignment explanation
Indices: 115744--115781 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
115734 AATATTGTGT
115744 TTCGAATT-CGAAAATAAAA
1 TTCGAATTGCGAAAATAAAA
**
115763 TTCGCGTTGCGAAAATAAA
1 TTCGAATTGCGAAAATAAA
115782 CAAGCTTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (20 bp):
TTCGAATTGCGAAAATAAAA
Found at i:115850 original size:20 final size:20
Alignment explanation
Indices: 115827--115889 Score: 126
Period size: 20 Copynumber: 3.1 Consensus size: 20
115817 TGACTTTTGT
115827 GTTGCGATTTACAGATTCGC
1 GTTGCGATTTACAGATTCGC
115847 GTTGCGATTTACAGATTCGC
1 GTTGCGATTTACAGATTCGC
115867 GTTGCGATTTACAGATTCGC
1 GTTGCGATTTACAGATTCGC
115887 GTT
1 GTT
115890 ACGAATTTGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACAGATTCGC
Found at i:115850 original size:40 final size:41
Alignment explanation
Indices: 115806--115938 Score: 125
Period size: 40 Copynumber: 3.3 Consensus size: 41
115796 TTGACTATCA
* * *
115806 CGTTGCGAATTTGAC-TTTTGTGTTGCGATTTACAGATTCG
1 CGTTGCGAATTTGACAATTCGCGTTGCGATTTACAGATTCG
115846 CGTTGCG-ATTT-ACAGATTCGCGTTGCGATTTACAGATTCG
1 CGTTGCGAATTTGACA-ATTCGCGTTGCGATTTACAGATTCG
* * * * *
115886 CGTTACGAATTTGGA-AACT-GGGTTGCGAAATTAGAG-TTCG
1 CGTTGCGAATTT-GACAATTCGCGTTGCG-ATTTACAGATTCG
115926 CGTTGCGAATTTG
1 CGTTGCGAATTTG
115939 TTGGTCATTT
Statistics
Matches: 78, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
38 2 0.03
39 5 0.06
40 57 0.73
41 12 0.15
42 1 0.01
43 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (41 bp):
CGTTGCGAATTTGACAATTCGCGTTGCGATTTACAGATTCG
Found at i:116827 original size:17 final size:16
Alignment explanation
Indices: 116800--116836 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
116790 TTAAATATTA
*
116800 TTTTAAATAATTACAT
1 TTTTAAATAATAACAT
116816 TTTTACAATAATAACAT
1 TTTTA-AATAATAACAT
116833 TTTT
1 TTTT
116837 CACCTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (16 bp):
TTTTAAATAATAACAT
Found at i:117206 original size:168 final size:170
Alignment explanation
Indices: 116926--117265 Score: 666
Period size: 168 Copynumber: 2.0 Consensus size: 170
116916 TTTTATCAAA
116926 TTAAACTCTTTGTATATTATTATTAAGTTAGTAATTTTGAGTAAAATACGAAGAACGAAAATTGA
1 TTAAACTCTTTGTATATTATTATTAAGTTAGTAATTTTGAGTAAAATACGAAGAACGAAAATTGA
116991 GAAGGATCCATATGAAAAGAATTCATTATTTTAGGGGTAATTATGTCCAAAGTGGTAGGAACTGT
66 GAAGGATCCATATGAAAAGAATTCATTATTTTAGGGGTAATTATGTCCAAAGTGGTAGGAACTGT
117056 TTATTACCTAAGAATTTGGAGGTGATGACATTCACACAAT
131 TTATTACCTAAGAATTTGGAGGTGATGACATTCACACAAT
117096 TTAAACTCTTTGTATATTATTATT-AG-TAGTAATTTTGAGTAAAATACGAAGAACGAAAATTGA
1 TTAAACTCTTTGTATATTATTATTAAGTTAGTAATTTTGAGTAAAATACGAAGAACGAAAATTGA
117159 GAAGGATCCATATGAAAAGAATTCATTATTTTAGGGGTAATTATGTCCAAAGTGGTAGGAACTGT
66 GAAGGATCCATATGAAAAGAATTCATTATTTTAGGGGTAATTATGTCCAAAGTGGTAGGAACTGT
117224 TTATTACCTAAGAATTTGGAGGTGATGACATTCACACAAT
131 TTATTACCTAAGAATTTGGAGGTGATGACATTCACACAAT
117264 TT
1 TT
117266 TAACCAAAAA
Statistics
Matches: 170, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
168 144 0.85
169 2 0.01
170 24 0.14
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.34
Consensus pattern (170 bp):
TTAAACTCTTTGTATATTATTATTAAGTTAGTAATTTTGAGTAAAATACGAAGAACGAAAATTGA
GAAGGATCCATATGAAAAGAATTCATTATTTTAGGGGTAATTATGTCCAAAGTGGTAGGAACTGT
TTATTACCTAAGAATTTGGAGGTGATGACATTCACACAAT
Found at i:119838 original size:9 final size:9
Alignment explanation
Indices: 119824--119900 Score: 55
Period size: 9 Copynumber: 8.0 Consensus size: 9
119814 GGCTGCTGGA
119824 AACCGGTTT
1 AACCGGTTT
119833 AACCGGTTTT
1 AACCGG-TTT
**
119843 CAACCAATTCT
1 -AACCGGTT-T
*
119854 GACCGGTTT
1 AACCGGTTT
*
119863 GACCGGTTT
1 AACCGGTTT
* *
119872 CGACCGGTTCG
1 -AACCGGTT-T
119883 AACCGGTTT
1 AACCGGTTT
119892 AACCGGTTT
1 AACCGGTTT
119901 GACCAGTCCG
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
9 25 0.45
10 25 0.45
11 5 0.09
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.31
Consensus pattern (9 bp):
AACCGGTTT
Found at i:119878 original size:19 final size:18
Alignment explanation
Indices: 119853--119904 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 18
119843 CAACCAATTC
119853 TGACCGGTTTGACCGGTT
1 TGACCGGTTTGACCGGTT
*
119871 TCGACCGGTTCGAACCGGTT
1 T-GACCGGTTTG-ACCGGTT
*
119891 TAACCGGTTTGACC
1 TGACCGGTTTGACC
119905 AGTCCGACCC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 4 0.14
19 17 0.59
20 8 0.28
ACGTcount: A:0.15, C:0.27, G:0.29, T:0.29
Consensus pattern (18 bp):
TGACCGGTTTGACCGGTT
Found at i:119888 original size:29 final size:30
Alignment explanation
Indices: 119824--119905 Score: 98
Period size: 29 Copynumber: 2.8 Consensus size: 30
119814 GGCTGCTGGA
*
119824 AACCGGTTTAACCGGTTTTCAACCAATTCTG
1 AACCGGTTTAACCGG-TTTCGACCAATTCTG
* **
119855 -ACCGGTTTGACCGGTTTCGACCGGTTC-G
1 AACCGGTTTAACCGGTTTCGACCAATTCTG
119883 AACCGGTTTAACCGGTTT-GACCA
1 AACCGGTTTAACCGGTTTCGACCA
119906 GTCCGACCCG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
28 5 0.11
29 26 0.59
30 13 0.30
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (30 bp):
AACCGGTTTAACCGGTTTCGACCAATTCTG
Found at i:119930 original size:17 final size:17
Alignment explanation
Indices: 119908--119976 Score: 120
Period size: 17 Copynumber: 4.1 Consensus size: 17
119898 TTTGACCAGT
*
119908 CCGACCCGACCATTGAC
1 CCGACCCGACCGTTGAC
*
119925 CCGACCCGACTGTTGAC
1 CCGACCCGACCGTTGAC
119942 CCGACCCGACCGTTGAC
1 CCGACCCGACCGTTGAC
119959 CCGACCCGACCGTTGAC
1 CCGACCCGACCGTTGAC
119976 C
1 C
119977 GTTGATCGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 49 1.00
ACGTcount: A:0.19, C:0.46, G:0.22, T:0.13
Consensus pattern (17 bp):
CCGACCCGACCGTTGAC
Found at i:120503 original size:71 final size:72
Alignment explanation
Indices: 120417--120561 Score: 283
Period size: 71 Copynumber: 2.0 Consensus size: 72
120407 TTATTCATGC
120417 GTTCGAAAACTGTAGCAGAGCGTGGTGAAACCAGCAATCAGTAGATTTACTATTTGAACCTATTG
1 GTTCGAAAACTGTAGCAGAGCGTGGTGAAACCAGCAATCAGTAGATTTACTATTTGAACCTATTG
120482 TCGAGGT
66 TCGAGGT
120489 GTTCG-AAACTGTAGCAGAGCGTGGTGAAACCAGCAATCAGTAGATTTACTATTTGAACCTATTG
1 GTTCGAAAACTGTAGCAGAGCGTGGTGAAACCAGCAATCAGTAGATTTACTATTTGAACCTATTG
120553 TCGAGGT
66 TCGAGGT
120560 GT
1 GT
120562 GTTCCCTACT
Statistics
Matches: 73, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 68 0.93
72 5 0.07
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (72 bp):
GTTCGAAAACTGTAGCAGAGCGTGGTGAAACCAGCAATCAGTAGATTTACTATTTGAACCTATTG
TCGAGGT
Found at i:127217 original size:10 final size:9
Alignment explanation
Indices: 127193--127253 Score: 59
Period size: 10 Copynumber: 6.4 Consensus size: 9
127183 GCTGTTGTAA
*
127193 ACCGGTTTA
1 ACCGGTTTG
127202 ACCGGTTCTG
1 ACCGGTT-TG
127212 ACCGGTTTG
1 ACCGGTTTG
*
127221 ACCGATTTCG
1 ACCGGTTT-G
*
127231 ACCGGTTCG
1 ACCGGTTTG
*
127240 AACCGGATTG
1 -ACCGGTTTG
127250 ACCG
1 ACCG
127254 ATCTGAACCG
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 21 0.49
10 22 0.51
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.26
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:127217 original size:19 final size:19
Alignment explanation
Indices: 127193--127237 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
127183 GCTGTTGTAA
*
127193 ACCGGTTTAACCG-GTTCTG
1 ACCGGTTTAACCGATTTC-G
*
127212 ACCGGTTTGACCGATTTCG
1 ACCGGTTTAACCGATTTCG
127231 ACCGGTT
1 ACCGGTT
127238 CGAACCGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.31
Consensus pattern (19 bp):
ACCGGTTTAACCGATTTCG
Found at i:127263 original size:29 final size:30
Alignment explanation
Indices: 127201--127263 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
127191 AAACCGGTTT
* *
127201 AACCGGTTCTGACCGGTTTGACCGATTTCG
1 AACCGGTTCTGACCGGATTGACCGATCTCG
127231 -ACCGGTTC-GAACCGGATTGACCGATCT-G
1 AACCGGTTCTG-ACCGGATTGACCGATCTCG
127259 AACCG
1 AACCG
127264 ACCGACCGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.24
Consensus pattern (30 bp):
AACCGGTTCTGACCGGATTGACCGATCTCG
Found at i:127294 original size:22 final size:21
Alignment explanation
Indices: 127265--127308 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 21
127255 TCTGAACCGA
127265 CCGACCGACCCGACCGTTGAC
1 CCGACCGACCCGACCGTTGAC
127286 CCGACCCGACCCGACCGTTGAC
1 CCGA-CCGACCCGACCGTTGAC
127308 C
1 C
127309 GTTGACCGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.18, C:0.50, G:0.23, T:0.09
Consensus pattern (21 bp):
CCGACCGACCCGACCGTTGAC
Found at i:129851 original size:3 final size:3
Alignment explanation
Indices: 129843--129869 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
129833 ATTATTGCTC
129843 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
129870 ACAAAAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:133332 original size:31 final size:31
Alignment explanation
Indices: 133211--133332 Score: 158
Period size: 31 Copynumber: 4.0 Consensus size: 31
133201 GAGTCGAGGG
133211 TTACCTATGTTCTTCGGGACATATGGACT-A
1 TTACCTATGTTCTTCGGGACATATGGACTGA
* * * *
133241 TTTACCTATGTTCTTTGGGATATGTGGA-TGT
1 -TTACCTATGTTCTTCGGGACATATGGACTGA
*
133272 TTACCTATGTTCTTCGGGACATAGGGACTGA
1 TTACCTATGTTCTTCGGGACATATGGACTGA
* *
133303 TTACCTAGGTTCTTCGGGACCTATGGACTG
1 TTACCTATGTTCTTCGGGACATATGGACTG
133333 GTCCTTCGGG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
30 24 0.31
31 53 0.69
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.38
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGA
Found at i:133535 original size:31 final size:31
Alignment explanation
Indices: 133507--133608 Score: 125
Period size: 31 Copynumber: 3.3 Consensus size: 31
133497 TATATATGTT
133507 ACAGATT-CCTATGTTCTTCGGGACATATGG
1 ACAGATTACCTATGTTCTTCGGGACATATGG
* * **
133537 ACAGATTACCTATGTTCTTTGGGATATATATAA
1 ACAGATTACCTATGTTCTTCGGG--ACATATGG
* *
133570 AAAGATTACTTATGTTCTTCGGGACATATGG
1 ACAGATTACCTATGTTCTTCGGGACATATGG
133601 ACAGATTA
1 ACAGATTA
133609 TTATATGAGC
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
30 7 0.12
31 26 0.45
33 25 0.43
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (31 bp):
ACAGATTACCTATGTTCTTCGGGACATATGG
Found at i:134332 original size:22 final size:22
Alignment explanation
Indices: 134282--134324 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
134272 GGACGAAATT
* *
134282 ACTGTAGCAAGGGTATTGGTAC
1 ACTGTAGCAAGGGTATCGATAC
134304 ACTGTAGCAA-GGTATCGATAC
1 ACTGTAGCAAGGGTATCGATAC
134325 CCCTGTAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (22 bp):
ACTGTAGCAAGGGTATCGATAC
Found at i:137639 original size:32 final size:34
Alignment explanation
Indices: 137580--137653 Score: 93
Period size: 32 Copynumber: 2.3 Consensus size: 34
137570 TTTTATTAAC
*
137580 ATAATACTAA-ATTATTATATTACTAATAAATGT-
1 ATAATATTAATATTATTATATTACTAAT-AATGTG
*
137613 ATAA-ATTAATATTATT-TATTATTAATAATGTG
1 ATAATATTAATATTATTATATTACTAATAATGTG
137645 ATAATATTA
1 ATAATATTA
137654 TTTTTGTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
31 5 0.14
32 17 0.47
33 14 0.39
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (34 bp):
ATAATATTAATATTATTATATTACTAATAATGTG
Found at i:137651 original size:27 final size:26
Alignment explanation
Indices: 137619--137694 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 26
137609 ATGTATAAAT
*
137619 TAATATTATTTATTATTAATAATGTGA
1 TAATATTATTTATTATTAATAAT-AGA
* **
137646 TAATATTATTTTTGTAAAAATAATAGA
1 TAATATTATTTAT-TATTAATAATAGA
*
137673 TAATATTAATTA-TATTAATAAT
1 TAATATTATTTATTATTAATAAT
137695 TTATTATATA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 8 0.20
27 24 0.60
28 8 0.20
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (26 bp):
TAATATTATTTATTATTAATAATAGA
Found at i:146633 original size:6 final size:6
Alignment explanation
Indices: 146622--146680 Score: 76
Period size: 5 Copynumber: 10.8 Consensus size: 6
146612 TTTCGCATTG
146622 CGACCA CGACCA CGACCA CGACCA CGA-CA CGA-CA CGA-CA CGA-CA
1 CGACCA CGACCA CGACCA CGACCA CGACCA CGACCA CGACCA CGACCA
146666 CGACC- CGACC- CGACC
1 CGACCA CGACCA CGACC
146681 CGAGACGAGA
Statistics
Matches: 52, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
5 30 0.58
6 22 0.42
ACGTcount: A:0.32, C:0.49, G:0.19, T:0.00
Consensus pattern (6 bp):
CGACCA
Found at i:146654 original size:5 final size:5
Alignment explanation
Indices: 146626--146708 Score: 67
Period size: 5 Copynumber: 16.0 Consensus size: 5
146616 GCATTGCGAC
*
146626 CACGA CCACGA CCACGA CCACGA CACGA CACGA CACGA CACGA CCCGA
1 CACGA -CACGA -CACGA -CACGA CACGA CACGA CACGA CACGA CACGA
* * * * * * *
146674 CCCGA CCCGA GACGA GACGA GACGA GACGA GACGA
1 CACGA CACGA CACGA CACGA CACGA CACGA CACGA
146709 GACGGACGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
5 57 0.77
6 17 0.23
ACGTcount: A:0.35, C:0.40, G:0.25, T:0.00
Consensus pattern (5 bp):
CACGA
Found at i:146709 original size:5 final size:5
Alignment explanation
Indices: 146681--146716 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
146671 CGACCCGACC
146681 CGAGA CGAGA CGAGA CGAGA CGAGA CGAGA CG-GA CG
1 CGAGA CGAGA CGAGA CGAGA CGAGA CGAGA CGAGA CG
146717 GCGGCGGCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.36, C:0.22, G:0.42, T:0.00
Consensus pattern (5 bp):
CGAGA
Found at i:147378 original size:21 final size:21
Alignment explanation
Indices: 147315--147378 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
147305 ACAACTGTAG
* *
147315 ACTATCGCAACACGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* ** *
147336 A-AATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
147356 ACTATCGCAACGCGAAATGCA
1 ACTATCGCAACGCGAAATGCA
147377 AC
1 AC
147379 GCGAATTTGC
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
20 14 0.44
21 18 0.56
ACGTcount: A:0.39, C:0.27, G:0.17, T:0.17
Consensus pattern (21 bp):
ACTATCGCAACGCGAAATGCA
Found at i:147408 original size:20 final size:19
Alignment explanation
Indices: 147385--147430 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
147375 CAACGCGAAT
* *
147385 TTGCGATGATGGAGATCGCG
1 TTGCGAT-ATAGAGATCGCA
*
147405 TTGCGATTTAGAGATCGCA
1 TTGCGATATAGAGATCGCA
147424 TTGCGAT
1 TTGCGAT
147431 TTTGTTGGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.30
Consensus pattern (19 bp):
TTGCGATATAGAGATCGCA
Found at i:147420 original size:19 final size:19
Alignment explanation
Indices: 147396--147432 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
147386 TGCGATGATG
*
147396 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
147415 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
147433 TGTTGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:152278 original size:23 final size:23
Alignment explanation
Indices: 152222--152279 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
152212 GACGTCTTGG
* *
152222 AGTAGGATTTCATTTAGAGCTAT
1 AGTAGCATTTTATTTAGAGCTAT
152245 AGTAGCATTTTATTTAGAGCTAT
1 AGTAGCATTTTATTTAGAGCTAT
152268 AGTAGCATTTTA
1 AGTAGCATTTTA
152280 ATTATTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (23 bp):
AGTAGCATTTTATTTAGAGCTAT
Found at i:154880 original size:13 final size:13
Alignment explanation
Indices: 154834--154911 Score: 59
Period size: 13 Copynumber: 5.5 Consensus size: 13
154824 ATCAAATGAG
154834 TTCATTC-ATAAT
1 TTCATTCAATAAT
* *
154846 TTCATTCTCAAATGAG
1 TTCA-T-TC-AATAAT
154862 TTCATTCAATAAT
1 TTCATTCAATAAT
*
154875 TTCATTCTCAAATGAGT
1 TTCA-T-TC-AAT-AAT
154892 TTCATTCAATAAT
1 TTCATTCAATAAT
154905 TTCATTC
1 TTCATTC
154912 TATCTTCTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
12 4 0.08
13 18 0.35
14 8 0.15
15 5 0.10
16 11 0.21
17 6 0.12
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (13 bp):
TTCATTCAATAAT
Found at i:154896 original size:17 final size:17
Alignment explanation
Indices: 154845--154898 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
154835 TCATTCATAA
154845 TTTCATTCTCAAATGAG
1 TTTCATTCTCAAATGAG
*
154862 -TTCA-T-TC-AAT-AA
1 TTTCATTCTCAAATGAG
154874 TTTCATTCTCAAATGAG
1 TTTCATTCTCAAATGAG
154891 TTTCATTC
1 TTTCATTC
154899 AATAATTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
12 1 0.03
13 7 0.23
14 3 0.10
15 3 0.10
16 7 0.23
17 9 0.30
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.44
Consensus pattern (17 bp):
TTTCATTCTCAAATGAG
Found at i:154898 original size:30 final size:29
Alignment explanation
Indices: 154825--154912 Score: 160
Period size: 29 Copynumber: 3.0 Consensus size: 29
154815 AACCTGTTCA
154825 TCAAATGAGTTCATTC-ATAATTTCATTC
1 TCAAATGAGTTCATTCAATAATTTCATTC
154853 TCAAATGAGTTCATTCAATAATTTCATTC
1 TCAAATGAGTTCATTCAATAATTTCATTC
154882 TCAAATGAGTTTCATTCAATAATTTCATTC
1 TCAAATGAG-TTCATTCAATAATTTCATTC
154912 T
1 T
154913 ATCTTCTTGA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
28 16 0.28
29 21 0.36
30 21 0.36
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (29 bp):
TCAAATGAGTTCATTCAATAATTTCATTC
Found at i:157293 original size:20 final size:20
Alignment explanation
Indices: 157242--157300 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
157232 ATTTTATGTT
* *
157242 AGGGGACGAACTTAAACTTA
1 AGGGGACGAACTAAAATTTA
* * *
157262 AGTAGGATGAACTAAAATTTC
1 AG-GGGACGAACTAAAATTTA
157283 AGGGGACGAACTAAAATT
1 AGGGGACGAACTAAAATT
157301 CCAGCGAATC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (20 bp):
AGGGGACGAACTAAAATTTA
Found at i:157710 original size:20 final size:21
Alignment explanation
Indices: 157659--157715 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
157649 TTATGTTAGG
*
157659 GGACGAACTTAAAACTTAAGTA
1 GGACGAAC-TAAAATTTAAGTA
* *
157681 GGATGAACTAAAATTTCAGT-
1 GGACGAACTAAAATTTAAGTA
157701 GGACGAACTAAAATT
1 GGACGAACTAAAATT
157716 CCAGGCGAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 14 0.45
21 10 0.32
22 7 0.23
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (21 bp):
GGACGAACTAAAATTTAAGTA
Found at i:161024 original size:22 final size:22
Alignment explanation
Indices: 160984--161026 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
160974 GCCTCAACAC
*
160984 TACAAAAGTGCATTCGCACTGA
1 TACAAAAGTGCATTAGCACTGA
161006 TACAAAAGTGCCA-TAGCACTG
1 TACAAAAGTG-CATTAGCACTG
161027 GGAAAGAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (22 bp):
TACAAAAGTGCATTAGCACTGA
Found at i:163092 original size:16 final size:16
Alignment explanation
Indices: 163071--163102 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
163061 GACGAGCACG
163071 GATGAACACCACTAAT
1 GATGAACACCACTAAT
163087 GATGAACACCACTAAT
1 GATGAACACCACTAAT
163103 TTAATTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.12, T:0.19
Consensus pattern (16 bp):
GATGAACACCACTAAT
Found at i:164630 original size:24 final size:24
Alignment explanation
Indices: 164603--164652 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
164593 TGGTGGTTGA
164603 TTTAATGGTTGT-TTGAACTTTATT
1 TTTAATGG-TGTATTGAACTTTATT
* *
164627 TTTAATGGTGTATTTAAGTTTATT
1 TTTAATGGTGTATTGAACTTTATT
164651 TT
1 TT
164653 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (24 bp):
TTTAATGGTGTATTGAACTTTATT
Found at i:169954 original size:70 final size:68
Alignment explanation
Indices: 169843--169979 Score: 256
Period size: 70 Copynumber: 2.0 Consensus size: 68
169833 AAAAGAAAAT
169843 TTTATATGCACGGCAATCCCGTGTACGCTGACCTTGTTAATTTTCTTGTTAGTGGAATTGTGCCT
1 TTTATATGCACGGCAATCCCGTGTACGCTGACCTTGTTAATTTTCTTGTTAGTGGAATTGTGCCT
169908 TTG
66 TTG
169911 TTTATATGCCACGGCAATCCCGTGGTACGCTGACCTTGTTAATTTTCTTGTTAGTGGAATTGTGC
1 TTTATATG-CACGGCAATCCCGT-GTACGCTGACCTTGTTAATTTTCTTGTTAGTGGAATTGTGC
169976 CTTT
64 CTTT
169980 TGATTTGAAT
Statistics
Matches: 67, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
68 8 0.12
69 14 0.21
70 45 0.67
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.41
Consensus pattern (68 bp):
TTTATATGCACGGCAATCCCGTGTACGCTGACCTTGTTAATTTTCTTGTTAGTGGAATTGTGCCT
TTG
Found at i:171637 original size:12 final size:11
Alignment explanation
Indices: 171605--171653 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
171595 CTTTATTAAT
171605 TTTTCTCTTTC
1 TTTTCTCTTTC
**
171616 TTTTAACTTTAC
1 TTTTCTCTTT-C
171628 TTTTCTCTTTC
1 TTTTCTCTTTC
171639 TTTTACTCTCTTC
1 TTTT-CTCT-TTC
171652 TT
1 TT
171654 CCCCTTATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 13 0.42
12 13 0.42
13 5 0.16
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTCTCTTTC
Found at i:171643 original size:23 final size:23
Alignment explanation
Indices: 171574--171643 Score: 94
Period size: 23 Copynumber: 3.2 Consensus size: 23
171564 CCTCTTAAAG
171574 TTTTAACTTT-TTTTTCTCTTTC
1 TTTTAACTTTATTTTTCTCTTTC
*
171596 -TTT-A-TTAATTTTTCTCTTTC
1 TTTTAACTTTATTTTTCTCTTTC
*
171616 TTTTAACTTTACTTTTCTCTTTC
1 TTTTAACTTTATTTTTCTCTTTC
171639 TTTTA
1 TTTTA
171644 CTCTCTTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
19 2 0.05
20 13 0.32
21 6 0.15
22 1 0.02
23 19 0.46
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (23 bp):
TTTTAACTTTATTTTTCTCTTTC
Found at i:172404 original size:20 final size:20
Alignment explanation
Indices: 172379--172419 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
172369 ACTGCCTTAT
172379 GTCGTAAGAAAAAGGTTGAG
1 GTCGTAAGAAAAAGGTTGAG
172399 GTCGTAAGAAAAAGGTTGAG
1 GTCGTAAGAAAAAGGTTGAG
172419 G
1 G
172420 AAAATGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.37, T:0.20
Consensus pattern (20 bp):
GTCGTAAGAAAAAGGTTGAG
Found at i:174850 original size:24 final size:24
Alignment explanation
Indices: 174823--174871 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
174813 TGGTGATTGA
174823 TTAATGGTTGT-TTGAACTTTATTT
1 TTAATGG-TGTATTGAACTTTATTT
* *
174847 TTAATGGTGTATTTAAGTTTATTT
1 TTAATGGTGTATTGAACTTTATTT
174871 T
1 T
174872 GGTTCTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 19 0.86
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.59
Consensus pattern (24 bp):
TTAATGGTGTATTGAACTTTATTT
Found at i:178631 original size:16 final size:16
Alignment explanation
Indices: 178610--178653 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
178600 ATTAAATTAA
178610 TGGTACTTATCGTTAG
1 TGGTACTTATCGTTAG
178626 TGGTACTTATCGTTAG
1 TGGTACTTATCGTTAG
*
178642 TGGTACTCATCG
1 TGGTACTTATCG
178654 GCGTATAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (16 bp):
TGGTACTTATCGTTAG
Found at i:183227 original size:255 final size:257
Alignment explanation
Indices: 182759--183273 Score: 959
Period size: 255 Copynumber: 2.0 Consensus size: 257
182749 GGGACAGATT
182759 CTGTAGGAATAATATTCTCCTCTTCAATCATCATTTTAAGTTTCTGTCTTACACTGATGGCCTGA
1 CTGTAGGAATAATATTCTCCTCTTCAATCATCATTTTAAGTTTCTGTCTTACACTGATGGCCTGA
182824 CTGAAATTTTTCTCCACACTTAAAACAAAGGTTATTTTGCCTATGTAATCAACGAGAATATGTTT
66 CTGAAATTTTTCTCCACACTTAAAACAAAGGTTATTTTGCCTATGTAATCAACGAGAATATGTTT
182889 AGGATTGGAATTTAGTATGGATTTAATAGGTATTAGCATTGAATTTTTCTTGAAACTATTATGGG
131 AGGATTGGAATTTAGTATGGATTTAATAGGTATTAGCATTGAATTTTTCTTGAAACTATTATGGG
182954 GTTTGGGTAGGGTGGGACCTTAAA-AAGGTCTCAACTTTCTGTTTTTAAATTCCACAGATAA
196 GTTTGGGTAGGGTGGGACCTTAAACAAGGTCTCAACTTTCTGTTTTTAAATTCCACAGATAA
183015 CTGTAGGAATAATATT-TCCTCTTC-ATCATCATTTTTAAGTTTCTTGTCTTACACTGATGGCCT
1 CTGTAGGAATAATATTCTCCTCTTCAATCATCA-TTTTAAGTTTC-TGTCTTACACTGATGGCCT
183078 GACTGAAA-TTTTCTCCACACTTAAAACAAAGGTTATTTTGCCTTATGTAATCAACGAGAATATG
64 GACTGAAATTTTTCTCCACACTTAAAACAAAGGTTATTTTGCC-TATGTAATCAACGAGAATATG
183142 TTTAGGATTGGAATTTAGTATGGATTTAATAGGTATTA-CATTGAATTTTTCTTGAAACTATTAT
128 TTTAGGATTGGAATTTAGTATGGATTTAATAGGTATTAGCATTGAATTTTTCTTGAAACTATTAT
183206 GGGGTTTGGGTAGGGTGGGACCTTAAACGAAGGTCTCAACTTTCTGTTTTTAAATTCCACAGATA
193 GGGGTTTGGGTAGGGTGGGACCTTAAAC-AAGGTCTCAACTTTCTGTTTTTAAATTCCACAGATA
183271 A
257 A
183272 CT
1 CT
183274 CATAGAGCTT
Statistics
Matches: 254, Mismatches: 0, Indels: 9
0.97 0.00 0.03
Matches are distributed among these distances:
254 7 0.03
255 106 0.42
256 102 0.40
257 39 0.15
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.39
Consensus pattern (257 bp):
CTGTAGGAATAATATTCTCCTCTTCAATCATCATTTTAAGTTTCTGTCTTACACTGATGGCCTGA
CTGAAATTTTTCTCCACACTTAAAACAAAGGTTATTTTGCCTATGTAATCAACGAGAATATGTTT
AGGATTGGAATTTAGTATGGATTTAATAGGTATTAGCATTGAATTTTTCTTGAAACTATTATGGG
GTTTGGGTAGGGTGGGACCTTAAACAAGGTCTCAACTTTCTGTTTTTAAATTCCACAGATAA
Done.