Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007935.1 Hibiscus syriacus cultivar Beakdansim tig00110345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1073174
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
File 1 of 6
Found at i:666 original size:119 final size:119
Alignment explanation
Indices: 1--21915 Score: 33626
Period size: 119 Copynumber: 187.9 Consensus size: 119
1 AAGATGGAGTGCTTTGGTTT--A--AATTTTTAGTTATTTGAAGT-AATGG-GATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * ***
60 TAGAATAACCTGCTCTTTTCAGTCATCTGAAACTTTGGTTG-TTT-TCCCCCATA
66 TAGAATAACCTGCTC-TTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
113 AAG-T-GAG-GCTTTGCTTTAAGTT-A-TTTTAGTTATTTGAAGT-AATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * **
172 TAGAATAACCTGCTCTTTTAATCATCTGAAACTTTGGTTGTTTT-TTCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATT-TTCCATA
226 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGT-AATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
289 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
343 AAGATGGA-TGCTTTGGTTTAAATTAATTTTTTG-TAATTGAAGTAAATGGAGATGGCAAGCACC
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGC-AGCACC
406 TTAGAATAACCTGCTCTTTGAGTCATCTG-AACC-TGGTTGTTTTATTTTCCATA
65 TTAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
459 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGAT-G--GCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
520 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTT-TTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
573 AAGATGGAGTTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCATCACC
1 AAGATGGAG-TGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACC
638 TTAGAATAACCTGCTCTTTGA-TCCATCTGAAACC-TGGTTGTTTTATTTTCCATA
65 TTAGAATAACCTGCTCTTTGAGT-CATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
692 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTAATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
757 TAGAATAACCTGCTCTTTGA-TCATCTGAAACCTTGGTTGTTTTATTTTCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTT-CCATA
811 AAGAT-GAGTGCTTTGGTTTAAA-TAATTTTTAGTTATTTGAAGTAAATGGAGATGGCA--ACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
872 TAGAATAACCTGCT-TTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
925 AAGATGG-TTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
988 TAGAATAACCTGCTCTTTGA-TC-TCTGAAACC-TGGTTGTTTTATTTTCC-TA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
1038 AAGATGGAGTGCTTTGGTTTAAATTAA--TTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
1101 TAGAATAACCT--TCTTTTAATCATCTGAAA-CTTGGTTGTTTT-TTTCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTT--TCCATA
1153 AAGATTGGAGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACC
1 AAGA-TGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACC
*
1217 TT-G-ATAACCTGCTCTTTGAGTCATCTGAAACCTTTGTTG-TTTA-TTTCCATA
65 TTAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
1268 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCA--ACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
1331 TAGAATAACCTACTCTTTGAGTCATCTGAAACCATGGTTG-TTT-TTTTCC-TA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
1382 AAGATGGTGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1447 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
1501 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGAAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
1566 T--AATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTGTTTT-TTTTCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTT--CCATA
1619 AAGATGGAGTGCTTT-GTTTAAATT-ATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1682 TAGAATAACCTGCTCTTTGA-TCATCTGAAACCTTGGTTGTTTTA-TTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
1734 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATAGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1799 TAGAATAACCTGCTCTTTGAG-CATCTGAAACCTTGGTTG-TTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
1851 AAGATGGAGTGCTTCGGTTTAAATTAATTTTTAGTTA-TTCAAGTAAATGGAGATGGCA--ACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1913 TAGAATAACCTGCTCTTTGAGTCATCTGAAA-CTTGGTTG--TT-TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
1963 AAGATGGAGTGCTTTGG-TTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGAT-G-A-CACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
2024 TAGAATATCCTGCTCTTTGA-TCATCTGAAATCTTGGTTGTTTT-TTTT-TATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
2075 AAGAT-GAGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
2137 TAGAATAACCTACTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
2191 AAG-TGG-GTGCTTTGGTTT--A--AA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* **
2249 TAGAATAACCTGCTCTTT-A-TCATCTGAAACTTTGGTTGTTTT-TTCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATT-TTCCATA
*
2301 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTA-TTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* ***
2365 TAGAATAACCTGCTC-TTGAGTCATCTGAAACTTTGGTTGTTTT-TCCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTAT-TTTCCATA
2418 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGT-AAT--AGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
2479 TAGAATAACCTGCTCTTTGA-TCATCTGAAACCTTGGTTG-TTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
2531 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTAG-TATTTGAAGTAAATGGAGATGGCAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
2593 TAGAATAACATGCTC-TTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCAT-
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
2645 AA-A-GG-GTGCTTTGGTTTTTTAAATT-ATTTTTAGTTATTTGAAGTAAGTGGAGATGGAAGCA
1 AAGATGGAGTGCTTTGG---TTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCA
2706 CCTTAGAATAACCTGCTCTTTGAGTCATCTGAAA-CTTGGTTG-----TTTTCCATA
63 CCTTAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
2757 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
2822 TAGAATAACCTGCTC-TTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCC-TA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
2874 AA-ATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * **
2938 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG---T-TTTCCCCCA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
2988 AA-A-GGAGTGCTTTGGTTT-AATTAATTTTTAG-TATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
3049 TAGAATAACCTGCTCTTTTAATCATCTGAAACTTTGGTTG-TTT-TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
3101 AAGATGG-GTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
3165 T--AATAACCTGCTCTTTGACTCATCTG-AACCTTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACC-TTGGTTGTTTTATTTTCCATA
*
3217 AAGATGGAGTGCTTT--TTTAAATTAATTTTTAGTTATTTGAAGTAAACGGAGAT-GCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
3279 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCATGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
3333 AAGAT-G-GTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAA-GGAGAT-G--GCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
3392 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGG-TGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
3445 AAGATGGA-TGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
3508 TAGAATAACCTGCTCTTTGAGTCATCTGAAACC-TGGTTGTTTTA-TTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
3560 AAGATGGA-TGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
3623 TAGAATAACCTGCTCTTTGAGTCATCTGAAA-CTTGGTTGTTTT-TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
3675 AAGATGGAGTGCTTT-GTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACA-CT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
3738 TAGAATAACCTGCTCTTTGA--CATC-GAAACCTTGGTTTTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
3789 AAGATGGAGTGCTTTGGTTTAAA-TAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
3853 TAGAATAACCTGCTCTTT--GTCATCTGAAACCTTGGTTG---T-TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
3901 AAGATGGAGTGCTTT-GTTTAAA-T-ATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
3963 TAGAATAA----CTCTTTGAGTCATCTGAAACCTTGGTTGTTTTA-TTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
4012 AAGAT-GTGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAA---AGATGGCA-CACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
4071 TAGAATAA-CTTCTCTTTGA--CATCTGAAA-C-TGG-TGTTTT-TTTT--ATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
4116 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
4180 TAGAATAACCT-CTCTTTGAGTCATCTGAAACC-TGGTTGTTTTA-TTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
4231 AAGATGGAGTGCTTTGGTTTAAA-TAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
4295 TAGAAT-ACCTGCTC-TTGAGTCATCTGAAA-C-T--TTGTTTTTTTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
4343 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAAT-G-GA-GGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* ***
4405 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG-TTT-TCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
4457 AAGAT-G-GTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
4520 TAGAATAACCTGCTCTTTGAGTCATCTGAAA-CTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
4573 AAGATGGAGTGCTTT-GTTTAAATTAATTTTTAG-TATTTGAAGTAAATGGAGATGGCA--ACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
4634 TAGAATAA-CTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
4687 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTTAGTTATTTGAAGT-AATGGAGAT-G--GCACC
1 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACC
4748 TTAGAATAACCTGCTCTTTGAGTCATCTGAAA-CTTGGTTGTTTT-TTTTCCATA
65 TTAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
4801 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTAGTTA-TTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
4864 TAGAATAACCTACTCTTTGAGTCATCTGAAACCTTGGTTG-TTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
4917 AAGATGGAGTGCTTTGGTTTAAATT--TTTTTAGTTATTTGAAGTAAATGGAGATGGCAG-ACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
4979 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTTGGTTG--TT-TTTTCCAT-
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACC-TTGGTTGTTTTATTTTCCATA
*
5030 -A-ATGGAGTGCTTTGGTTTAAGTTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
5093 TAGAATAACCTGCTCTTTTA-TCATCTGAAACTTTGGTTGTTTGT-TTTTCCCCAT-
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTT-TATTTT--CCATA
5147 AA-A--GAGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAA-GGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
5207 T--AATAACCTGCTCTTTGA-TCATCTGAAACCTT--TTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
5256 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAG-TATTTGAAGT-AA-CGAGATGGCA--ACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
5316 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCATGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
**
5370 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGAAAGC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
5434 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTG-TTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
5487 AAGATGGA-TGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
5551 TAGAATAACCTGCTCTTTGA-TCATCT-AAACCTTGG-T-TTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
5601 AAGATGGAGTGCTTTGGTTTAAATTAA---TTAGTTATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
5663 T--AATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTA-TTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
5714 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCA-C-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
5777 TAG-AT-ACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTT-TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
5828 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
5893 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG-TTT-TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
5945 AAGATGGAGTGCTTT-GTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
6009 TAGAATAA-CTGCTCTTTGA-TCATCTGAAA-CTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
6060 AAGATGGAGTGCTTTGGTTTAAATT-ATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
6124 TAGAATAACCTGCTCTTTGAGTCATCTGAAAACTTGG-TGTTTTA-TTTCC-TA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
6175 AAGAT-GAGTGCTTTGGTTTAAATTAATTTTTAGTTA-TTGAAGT-AATGGAGATGGCA-C-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
6235 TAGAATAACCT--TTTTTGAGTAATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
6287 AAGATGG-GTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
6351 TAGAATAACCTG--CTTT---TCATCTGAAACC-TGGTTGTTTTATTTTCCTTA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
6399 AAGATGGTGTGCTTTGGTTTAAATTAATTTTTAGTTTTTTGAAGTAAACGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
6464 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
6518 AAGATGGAGTGCATTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGAAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * **
6583 TAGATTAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG-TTT-TTCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
6635 AAGATGGAGTGCTTTAGTTTAAACT-ATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
6699 TAGAATAACCTGCTTTTTGATTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
6753 AAGATGGAGTGCTTTGGTTTAAATTAATATTTAGTAATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
6818 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
6872 AAGATGGAGTGCTTCGGTTTAAATTAATTTTTAGTTATTTCAAGTAAATGGAGATGGAAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
6936 TAAAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
6990 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* **
7055 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG-TTT-TTCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * * *
7107 AAGATGGAGTGCTTTAGTGTAAACT-ATTTTT--TTATTTGAATTAAATGGAGATGGCATCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
7169 TATAATAA-CTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCAT-
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
7221 AAGATGGAGTGCTTTGG-TTAAATTAATTTTTA-TTATTTGAAGTAAAT-GAGATGACAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
7283 TAGAATAACCTTCTCTTTGAGTCATCTGAAA-CTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
7336 AAGAT-GAGTGCTTTGGTTTAAATTAATTTTTAGTTA-TTGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
7399 TAGAATAACCTACTC-TTGAGTCATCTGAAACCTTGGTTGTTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTG-TTTTATTTTCCATA
* *
7453 AAGTTGGAGTGCTTTGGTTTAAGTTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCA-CT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
7517 TAGAATAACCTGCTCTTT---TCATCTGAAACTTTGGTTGTTTTTTTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
7568 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAA-GGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
7632 TGGAATAACCTGCTCTTTGA-TCATCTGAAACCTTTGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
7685 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAG-TATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
7749 TAGAATAA-CAGCTCTTTGAGTCATCTGAAACTTTGGTT-TTTT-TTTTCCCCAAA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTT--CCATA
7802 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
7866 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG---T-TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
7916 AAGAT---GT-CTTTGGTTTAAATTAATTTTTAGTTA-TTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
7976 TAGAATAACCTACTCTTTGAGTCATCTCAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
8030 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTCGAAGTAAATGGAGATGGGAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
8095 TAGAATAACATGCTCTTTGAGTAATCTGAAACCTTGGTTGTTTTA--TTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * * *
8147 AAGATGGAGTGCTTTGGTTTAAGTTATTTTTTAGTTATTTGAAGTAAGTGGAGATGGAAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * **
8212 TAGAATAACCTGCTCTTTTAGTCATCTGAAACTTTGGTTGCTTTT-TTCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTG-TTTTATT-TTCCATA
*
8267 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
8332 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
8386 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * ***
8451 TAGAATAACCTGCTCTTTCAGTCATCTGAAACTTTGGTTGCTTT-TCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
8504 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCA-CA-CT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
8567 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
8621 AAGATGGAGTGCTTTGTTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
8685 TAGAATAA--TGCTCTTTGAGTCATCTGAAACCTTGG-T-TTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
8735 AAGATGGTGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGT-AACGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
8799 TAGAA-AACCTGCTCTTTGAGTCATCTAAAACCATGG-TGTTTTTTTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
8851 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGACAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
8915 TAGAATAA-C--CTCTTTGAGTCATCTGAAACCTTGG-TG-TTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
8964 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACA-CT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
9028 TAGAATAACCTGCTCTTTGAGTCATCTGAAA-CTT--TT-TTTT-TTTTCCCAT-
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTT-CCATA
9077 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
9141 TAGAA-AACCTGCTCTTTGATTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
9194 AAGATGGAGTGCTTTGGTTTAAATTAA-TTTTAG-TATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
9257 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTG-TTTATTTT-CATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
9309 AAGATGGAGTGCTTCGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGACAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
9374 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
9428 AAGATGGATTGC-TTGGTTTAAATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAACACC-
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
9490 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG-----TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
9539 AAGATGGAGTGCTTTAGTTTAAACT-A-TTTTAGTTATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
9602 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
9656 AAGATGTAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAAT-GAGATGACA-CACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
9719 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
9773 AAGATGGATTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACATCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
9838 TAGAATAACCTGCTCTTTGAGTCATCTGAAA-C----TTG---T-TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
9883 AAGATGGAGTGCTTTGGTTT-AATTAA-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
9946 TAGAATAACCTGCTCTTTGATTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
10000 AAGATGGAGTGCTTTGGTTTAAATTAA--TTTAG-TATTTGAAGTAAATGGAGATGGCAACACTT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
10062 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTACATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* ** *
10116 AAGATGGAGTGCTTCGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATAACAGTACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
10181 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
10235 AAGATGGATTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACATCA
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
10300 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG---T-TTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
10350 AAGATGGAG-GCTTT-GTTTAAA-T-A-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
10410 TAG-A-AACCTGCTATTTGATTCATCTGAAACCTTGGTTGTTTTATTTTCC-TA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
10461 AAGATGGAGTGCTTT-GTTTAAATTAATTTTTAG-TA-TTGAAGTAAATAGAGATGACAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
10523 TAGAATAACCTTCTCTTTGAGTCATCTGAAA-CTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
10576 AAGAT-GA-TGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
10639 TAGAATAACCTACTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCTTA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
10693 AAGATGGTGTGCTTTGGTTTAAATTAATTTTTATTTATTTGAAGTAAACGGAGATGGTAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
10758 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
10812 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
10877 TAGAATAACCTGCTCTTTGAGTAATCTGAAACTTTGGTTG--TT-TTTCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
10928 AAGATGGAGTGCTTTAGTTTAAACTT-A-TTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACC
1 AAGATGGAGTGCTTTGGTTTAAA-TTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACC
* *
10991 TTAGAATAACCTGCTCTTTGATTCATTTGAAACCTTGGTTGTTTTATTTTCCATA
65 TTAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
11046 AAGATGGAGTGCTTTGGTTTAAATTAATATTTAGTAATTTGAAGTAAATGGAGATGGAAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
11111 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
11165 AAGATAGAGTGCTTCGGTTTAAATTAATTTTTAGTTATTTGAAATAAATGGAGATGGCA--ACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
11228 TAGAATAACC-GCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
11281 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCA-CACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
11345 TAGAATAA-CTGCTCTTTGAGTCATCTGAAACTTTGGTTG--TT-TTTCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
11395 AAGATGGAGTGCTTTAGTTTTAAA-T-ATTTTTAGTTATTTGAAGTAAATGGAGATGGTAGCACC
1 AAGATGGAGTGCTTT-GGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACC
*
11458 TTAGAATAAACTGCTCTTTGA-TCATCTGAAACCTTGGTTGTTTTATTTTCCAT-
65 TTAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
11511 AA-A--GAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGACAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
11573 TAGAATAACCTGCTCTTTGAGTCATCTGAAA-CTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
11626 AAGAT-GAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
11689 TAGAATAACCTACTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCAT-
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
11742 AA-A-GGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAA--GAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
11803 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTT--TTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
11855 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
11920 TAGATTAACCTGCTCTTTGAGTCATCTGAAA-CTTGGTTG--TT-TTTCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
11970 AAGATGGAGTGCTTTAGTTTAAACT-ATTTTTAGTTATTTGAAGTAAATGTAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
12034 TAGAATAACCTGCTCTTTGATTCATCTAAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
12088 AAGATGGAGTGCTTTGGTTTAAATTAATATTTAGTAATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
12153 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
12207 AAGATGGAGTGCTTTTGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* **
12272 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG-TTT-TTCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
12324 AAGATGGAGTGCTTTAGTTTAAACT-ATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
12388 TAGAATAAACTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
12442 AAGATGTAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATAGAGATGACAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
12507 TAGAATAACCTTCTCTTTGAGTCATCTAAAATCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
12561 AAGATTGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * **
12626 TAGAATAACCTGCTCTTTTAATCATCTGAAACTTTGGTTG-TTT-TTCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
12678 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
12743 TGGAATAACCTGCTCTTTGACTCATCTGAAACCTTTGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
12797 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTAATTTGAAGTAAATGGAGATGGGAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *** *
12862 TAGAATAACATGCTCTTTGAGTCATCTGAAACTTTGGTTGTTTT-TCCCCCCAAA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTAT-TTTCCATA
*
12916 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * ****
12981 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTAG-TTT-CCCACCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
13033 AAGATGTAATGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCATCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
13098 TAGAATAACCTGATCTTTGAGTCATCTCAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
13152 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTCGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * ****
13217 TAGAATAACATGCTCTTTCAGTCATCTGAAACTTTGGTTGCTTTT-CCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTG-TTTTATTTTCCATA
* * *
13271 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATATGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
13336 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
13390 AAGATGGAGTGCTTTGTTTTAAATTAATTTTAAGTTATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
13455 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
13509 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTCGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
13574 TAGAATAACATGCACTTTGAGTAATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * * * * *
13628 AACATGGAGTGCTTTCGTTTAAGTTATTTTTTAGTTGTTTGAAGTAAGTGGAGATGGAAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
**
13693 TAGAATAACCTGCTCTTTGAGTCATCTGAAACAATGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
13747 AAGATGGAGTTCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGACAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
13812 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
13866 AAGATTGATTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACATCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* ***
13931 TAGAATAACCTTCTCTTTGAGTCATCTGAAA-CTT--TT-TTTT-TCCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTAT-TTTCCATA
*
13981 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
14046 TAGAATAACCTGCTCTTTGATTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
14100 AAGATGGAGTGCTTTGGTTTAAATTAATATTTAGTAATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
14165 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTACATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
14219 AAGATGGAGTGCTTCGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGAAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
14283 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
14337 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
14402 TAGAATAAACTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * * * *
14456 AAGATGTAGTGCTTTGGTTTAAATTAATTTTTAGATATTTGAAGTAAATAGAGATGACAACATCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
14521 TAGAATAACCTTCTCTTTGAGTCATCTGAAATCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
14575 AAGATTGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
14640 TAGAATAACTTACTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
14694 AAGTTGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAACGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
14759 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
14813 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTCGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
14878 TAGAATAACATGCACTTTGAGTAATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * * * * *
14932 AACATGGAGTGCTTTCGTTTAAGTTATTTTTTAGTTGTTTGAAGTAAGTGGAGATGGAAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
**
14997 TAGAATAACCTGCTCTTTGAGTCATCTGAAACAATGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
15051 AAGATGGAGTTCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGACAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
15116 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * * * *
15170 AAGATTGATTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAAAGGAAATGGCAACATCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * ** ***
15235 TAGAATAACCTTCTCTTTGAGTCATCTGAAACTTTTTTTGTTTT-TCCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTAT-TTTCCATA
*
15289 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
15354 TAGAATAACCTGCTCTTTGATTCATCTGAAACCTTGGTTGTTTAATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
15408 AAGATGGAGTGCTTTGGTTTAAATTAATATTTAGTAATTTGAAGTAAATGGAGACGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
15473 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTACATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
15527 AAGATGGAGTGCTTCGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGAAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
15591 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
15645 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
15710 TAGAATAAACTGCTCTTTGACTCATCTGAAACCTTGATTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * * * *
15764 AAGATGTAGTGCTTTGGTTTAAATTAATTTTTAGATATTTGAAGTAAATAGAGATGACAACATCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
15829 TAGAATAACCTTCTCTTTGAGTCATCTGAAATCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
15883 AAGATTGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
15948 TAGAATAACCTACTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
16002 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAACGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
16067 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
16121 AAGATAGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
16186 TAGAATAACCTGCTCTTTGATTCATCTGAAACCTTGGTTGTTTAATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
16240 AAGATGGAGTGCTTTGGTTTAAATTAATATTTAGTAATTTGAAGTAAATGGAGACGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
16305 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTACATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
16359 AAGATGGAGTGCTTCGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGAAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* **
16423 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG-TTT-TTCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
16475 AAGATGGAGTGCTTTAGTTTAAACT-ATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
16539 TAGAATAAACTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
16593 AAGATGTAGTGCTTTGGTTTAGATTAATTTTTAGTTATTTGAAGTAAATAGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
16658 TAGAATAAACTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
16712 AAGATGTAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATAGAGATGACAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
16777 TAGAATAACCTTCTCTTTGAGTCATCTAAAATCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
16831 AAGATTGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATAGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * ***
16896 TAGAATAACCTGCTCTTTTAATCATCTGAAACTTTGGTTGTTTT-TCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
16949 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGCCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
17014 TGGAATAACCTGCTCTTTGACTCATCTGAAACCTTTGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
17068 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTAATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *** *
17133 TAGAATAACATGCTCTTTGAGTCATCTGAAACTTTGGTTGTTTT-TCCCCCCAAA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTAT-TTTCCATA
*
17187 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * ****
17252 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTAG-TTT-CCCACCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
17304 AAGATGTAATGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCATCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
17369 TAGAATAACCTGATCTTTGAGTCATCTCAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
17423 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTCGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * ****
17488 TAGAATAACATGCTCTTTCAGTCATCTGAAACTTTGGTTGCTTTT-CCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTG-TTTTATTTTCCATA
* *
17542 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
17607 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
17661 AAGATGGAGTGCTTTGTTTTAAATTAATTTTAAGTTATTTGAAGTAAATGTATATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
17726 TAGAATAAGCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
17780 AAGATGGTGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
17845 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCATGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
17899 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGACGTAAATGGAGATGACATCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
17964 TAGAATAACATGCTCTTTGAGTCATCTAAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
18018 AAGATGGATTGCTGTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACATCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* ** **
18083 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTTTTTG-TTT-TTCCCCTATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCC-ATA
*
18136 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
18201 TAGAATAACCTGCTCTTTGATTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
18255 AAGATGGAGTGCTTTTGTTTAAATTAATATTTAGTAATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
18320 TAGAATAACCTGCTCTTTGACTCATCTGAAACATTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
18374 AAGATGGAGTGCTTCGGTTTAAATTAATTTTTAATTATTTGAAGTAAATGGAGATGGCAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
18438 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
18492 AAGATGGAGTGCTTTGGTTTAAATT-ATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* **
18556 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG-TTT-TTCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
18608 AAGATGGAGTGCTTTAGTTTAAACT-ATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* **
18672 TAGAATAAACTGCTCTTTGACACATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
18726 AAGATGTAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATAGAGATGACAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
18791 TATAATAACCTTCTCTTTGAGTCATCTGAAATCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
18845 AAGATTGACTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
18910 TAGAATAACCTACTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
18964 AAGTTGGAGTGCTTTGGTTTAAGTTAATTTTTAGTTATTTGAAGTAAATAGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * * * **
19029 TGGAATAACCTTCTCTTTTAATCATCTGAAACTTTGGTTGTTTT-TTCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATT-TTCCATA
* * *
19083 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGACGGAAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
19148 TGGAATAACCTGCTCTTTGACTCATCTGAAACCTTTGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
19202 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTAATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * ** *
19267 TAGAATAACATGCTCTTTGAGTCATCTGAAACTTTGGTTGTTTT-TCCCTCCAAA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTAT-TTTCCATA
*
19321 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGTACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
19386 TAGAATAACCTGCTCTTTGAGTCATCTCAAACCTTGGTTGTTTTATTTTCCGTA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
19440 AAGATGGAGTGCTTTGGTTTAAATTAATATTTAGTAATTTGAAGTAAATGGAGATGGCAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
19505 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
** *
19559 AAGATGGAGTGCTTCAGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAAC-CCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
19623 TAGAATAACCTGCTCTTTGAGTCATCTAAAACCTTGGTTGTTTTATTTTACATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
19677 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* ** *
19742 TAGAATAACCTGCTCTTTGAGTCATCTGAAACTTTGGTTG-TTT-TTCCCCGTA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
19794 AAGATGGAGTGCTTTAGTTTAAACT-ATTTTTAGTTATTTGAAGTCAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* *
19858 TAGAATAAACTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * *
19912 AAGATGTAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATAGAGATGAG-AACACC
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATG-GCAGCACC
* * *
19976 TTAGAATAACCTTCTCTTTGAGTCATCTAAAATCTTGGTTGTTTTATTTTCCATA
65 TTAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
** * *
20031 AAGATTAAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
20096 TAGAATAACCTACTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
20150 AAGTTGGAGTGCTTTGGTTTAAGTTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * **
20215 TAGAATAACCTGCTCTTTTAATCATCTGAAACTTTGGTTGTTTT-TTCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATT-TTCCATA
* *
20269 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGAAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * *
20334 TGGTATAACCTGCTCTTTGACTCATCTGAAACCTTTGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
20388 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTGGTAATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * **** *
20453 TAGAATAACATGCTCTTTGAGTCATCTGAAACTTTGGTTGTTTT-CCCCCCAAA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*
20506 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * ***
20571 TAGAATATCCTGCTCTTTGAGTCATCTGAAACTTTGGTTGTTTT-TCCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTAT-TTTCCATA
* *
20625 AAGATGTAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGTGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
20690 TAGAATAACCTGCTCTTTGAGTCATCTCAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
20744 AAGATGGAGTGCTTTGGATTAAATTAATTTTTAGTT-TTTCGAAGTAAATGGAGATGGAAACCCC
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTT-GAAGTAAATGGAGATGGCAGCACC
* *
20808 TTAGAATAACATGCTCTTTGAGTAATCTGAAACCTTGGTTGTTTTATTTTCCATA
65 TTAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * * * *
20863 AACATGGAGTGCTTTGGTTTAAGTTATTTTTTAGTTATTTGAAGTAAGTGGAGATGGAAGCACAT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * **
20928 TAGAATAACCTGCTCTTTTAGTCATCTGAAACTTTGGTTGCTTTT-TTCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTG-TTTTATT-TTCCATA
*
20983 AAGATGGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
21048 TAGAATAACCTGCTCTTTGACTCATCTCAACCCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
21102 AAGATAGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGCAAATGGAGTTGGCGGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
21167 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
21221 AA-ATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAATTAAATGGAGATGGAAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
21285 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
*** * *
21339 AAGATGGAGTGCTTTGGTTTAAATTAATTTTCCTTTATTTGAAGTAAATGGAGATGGAAACACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * * ***
21404 TAGAATAACCTACTCTTTGTGTCATCTGAAACTTTGGTTG-TTT-TCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
21456 AAGATGGAGTGTTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCATCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
*
21521 TAGAATAACCTGCTCTTTGACTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* * * *
21575 AAGATGTAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATAGAGATGGCGGCACCA
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* ** * *
21640 TAGAGTAACCTTTTCTTTGAGTCATCTAAAACCTTGGTTGTTTTATTTTACATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
21694 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAACCCCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * ***
21759 TAGAATAACCTACTCTTTGAGTCATCTGAAACTTTGGTTGTTTT-TCCCCCATA
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
* *
21812 AAGATTGAGTGCTTTGGTTTAAATTAAATTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
1 AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
* * *
21877 TAGAATAACATGCTCTTTGAGTAATCTGAAACCCTGGTT
66 TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTT
21916 TTAAATAGCA
Statistics
Matches: 20079, Mismatches: 1241, Indels: 960
0.90 0.06 0.04
Matches are distributed among these distances:
104 8 0.00
105 20 0.00
106 35 0.00
107 3 0.00
108 134 0.01
109 92 0.00
110 298 0.01
111 490 0.02
112 718 0.04
113 856 0.04
114 1507 0.08
115 1595 0.08
116 2126 0.11
117 2183 0.11
118 1941 0.10
119 7842 0.39
120 231 0.01
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (119 bp):
AAGATGGAGTGCTTTGGTTTAAATTAATTTTTAGTTATTTGAAGTAAATGGAGATGGCAGCACCT
TAGAATAACCTGCTCTTTGAGTCATCTGAAACCTTGGTTGTTTTATTTTCCATA
Found at i:22063 original size:15 final size:15
Alignment explanation
Indices: 22039--22069 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22029 GTTTTCTACA
22039 TTTCTCTCCAACCTT
1 TTTCTCTCCAACCTT
*
22054 TTTCTTTCCAACCTT
1 TTTCTCTCCAACCTT
22069 T
1 T
22070 CTATCGTCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.35, G:0.00, T:0.52
Consensus pattern (15 bp):
TTTCTCTCCAACCTT
Found at i:22087 original size:22 final size:22
Alignment explanation
Indices: 22062--22105 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
22052 TTTTTCTTTC
22062 CAAC-CTTTCTATCGTCGTTCTA
1 CAACACTTTCTATCGTC-TTCTA
*
22084 CAACACTTTCTATCTTCTTCTA
1 CAACACTTTCTATCGTCTTCTA
22106 TTTCTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.20, C:0.32, G:0.05, T:0.43
Consensus pattern (22 bp):
CAACACTTTCTATCGTCTTCTA
Found at i:35077 original size:12 final size:11
Alignment explanation
Indices: 35062--35106 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 11
35052 ATTCTTTAAT
35062 TTTTTTTATTTG
1 TTTTTTT-TTTG
*
35074 TTTTTTTTTGAG
1 TTTTTTTTT-TG
35086 TTTTTGTTTTTG
1 TTTTT-TTTTTG
35098 TTTTTTTTT
1 TTTTTTTTT
35107 CTAATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 6 0.21
12 19 0.66
13 4 0.14
ACGTcount: A:0.04, C:0.00, G:0.11, T:0.84
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:35178 original size:4 final size:4
Alignment explanation
Indices: 35169--35195 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
35159 TCTTTTTTTC
35169 TTAT TTAT TTAT TTAT TTAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTA
35196 GATACTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:35421 original size:16 final size:16
Alignment explanation
Indices: 35402--35492 Score: 71
Period size: 16 Copynumber: 5.6 Consensus size: 16
35392 TTGCTGTTAT
35402 TTTTATTTTTTATTCA
1 TTTTATTTTTTATTCA
*
35418 TTTTGTTTTTTATTCA
1 TTTTATTTTTTATTCA
* *
35434 TTTTACTATTTTATCTTA
1 TTTTA-TTTTTTAT-TCA
* *
35452 TTTTGTTTTATTCTT-A
1 TTTTATTTT-TTATTCA
35468 TTTT-TATTTTTATTC-
1 TTTTAT-TTTTTATTCA
35483 TATTTATTTT
1 T-TTTATTTT
35493 ATTACTTTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
15 6 0.10
16 33 0.55
17 12 0.20
18 9 0.15
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTTATTTTTTATTCA
Found at i:35476 original size:32 final size:32
Alignment explanation
Indices: 35398--35487 Score: 94
Period size: 34 Copynumber: 2.7 Consensus size: 32
35388 TCTTTTGCTG
*
35398 TTATTTTTATTTTTTATTCATTTTGTTTTTTA
1 TTATTTTTATTTTATATTCATTTTGTTTTTTA
* *
35430 TTCATTTTACTATTTTATCTT-ATTTTGTTTTATTC
1 TT-ATTTT--TATTTTATATTCATTTTGTTTT-TTA
35465 TTATTTTTATTTT-TATTCTATTT
1 TTATTTTTATTTTATATTC-ATTT
35488 ATTTTATTAC
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
31 3 0.06
32 8 0.17
33 9 0.19
34 15 0.31
35 13 0.27
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (32 bp):
TTATTTTTATTTTATATTCATTTTGTTTTTTA
Found at i:35477 original size:5 final size:5
Alignment explanation
Indices: 35440--35552 Score: 56
Period size: 5 Copynumber: 22.0 Consensus size: 5
35430 TTCATTTTAC
* * *
35440 TATTT TATCT TATTT TGTTT TATTCT TATTTT TATTTT TATTC TA-TT
1 TATTT TATTT TATTT TATTT TATT-T TA-TTT TA-TTT TATTT TATTT
* * *
35487 TATTT TA--T TACTT TATTT CT-TTT ATCGTTT TATTT TATTG TATTTT
1 TATTT TATTT TATTT TATTT -TATTT -T-ATTT TATTT TATTT TA-TTT
*
35533 TTTCTT TATTT TA-TT TATTT
1 TAT-TT TATTT TATTT TATTT
35553 AGCCATGTTC
Statistics
Matches: 84, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
3 3 0.04
4 7 0.08
5 48 0.57
6 21 0.25
7 5 0.06
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (5 bp):
TATTT
Found at i:36707 original size:17 final size:15
Alignment explanation
Indices: 36677--36706 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
36667 ATTTTACTAA
36677 TTCTTTTCATTTTTG
1 TTCTTTTCATTTTTG
36692 TTCTCTTTCATTTTT
1 TTCT-TTTCATTTTT
36707 TATCATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.73
Consensus pattern (15 bp):
TTCTTTTCATTTTTG
Found at i:41308 original size:85 final size:84
Alignment explanation
Indices: 41164--41732 Score: 516
Period size: 85 Copynumber: 6.7 Consensus size: 84
41154 TCCCAGCCTA
* * * * * * *
41164 TTACAGTATAGCTCAAGGA-GAGAAGGGCTATATGCCAACCAAGACCTTTGAGTTCGATTACATT
1 TTACAGCATAACTCAA-GACGAGAAGGGTTATCTGTCAA-CAAGAACTTCGAGTTCGATTACATT
* *
41228 CAGCTCAAAGGCACATCAAGT
64 CAGCTCAAAGGCATATCAAAT
* * * *
41249 TTACAGCATAGCTCAAGACGAGAAGGGCTATCTGTCAACCAAGAACTTCGAGTTTGATTATATTC
1 TTACAGCATAACTCAAGACGAGAAGGGTTATCTGTCAA-CAAGAACTTCGAGTTCGATTACATTC
*
41314 AGCTCAAAGGCACATCAAAT
65 AGCTCAAAGGCATATCAAAT
* * * * * *
41334 TTACATCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACCAAGACCTTTGAGTTCGATTACATTC
1 TTACAGCATAACTCAAGACGAGAAGGGTTATCTGTCAA-CAAGAACTTCGAGTTCGATTACATTC
*
41399 AGCTCAAGGGCATATCAAAT
65 AGCTCAAAGGCATATCAAAT
* * * * * * *
41419 TTACAACATAACTCAAGGCGATAAGGGTTATTTGTTAATAAAAACCTTCGAGTTCGATTACATTC
1 TTACAGCATAACTCAAGACGAGAAGGGTTATCTGTCAACAAGAA-CTTCGAGTTCGATTACATTC
*
41484 AGCTCAAGGGCATATCAAAT
65 AGCTCAAAGGCATATCAAAT
* * * * * * * ** * *
41504 TTATAGCAGAACTTAAGGA-GAAAAGGGTTATCTGTTAATAAAAACCTTATAGTTCAATTAAATT
1 TTACAGCATAACTCAA-GACGAGAAGGGTTATCTGTCAACAAGAA-CTTCGAGTTCGATTACATT
* *
41568 CAGCTCAAGGGCATATAAAAT
64 CAGCTCAAAGGCATATCAAAT
* ** * * *
41589 TTACAGCACAACTCAAGATAAGAAGGGTTATCTGTTAATAAAAACCTTCGAGTTCGATTACATTC
1 TTACAGCATAACTCAAGACGAGAAGGGTTATCTGTCAACAAGAA-CTTCGAGTTCGATTACATTC
*
41654 AGCTTTAGAA--CATATCAAAT
65 AGC-TCA-AAGGCATATCAAAT
* * * * *
41674 TTACATCATAACTCAAAGGCGATAAGAGTTATCTGTCAACAAGAACTTTCGAGATCGAT
1 TTACAGCATAACTC-AAGACGAGAAGGGTTATCTGTCAACAAGAAC-TTCGAGTTCGAT
41733 CCTGTTCAGC
Statistics
Matches: 415, Mismatches: 61, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
84 7 0.02
85 371 0.89
86 36 0.09
87 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (84 bp):
TTACAGCATAACTCAAGACGAGAAGGGTTATCTGTCAACAAGAACTTCGAGTTCGATTACATTCA
GCTCAAAGGCATATCAAAT
Found at i:41470 original size:170 final size:170
Alignment explanation
Indices: 41175--41732 Score: 640
Period size: 170 Copynumber: 3.3 Consensus size: 170
41165 TACAGTATAG
* * *
41175 CTCAAGGAGAGAAGGGCTATATGCCAACCAAGACCTTTGAGTTCGATTACATTCAGCTCAAAGGC
1 CTCAAGGAGAGAAGGGCTATCTGTCAACCAAGACCTTTGAGTTCGATTACATTCAGCTCAAGGGC
* * * * * * * *
41240 ACATCAAGTTTACAGCATAGCTCAAGACGAGAAGGGCTATCTGTCAACCAAGAA-CTTCGAGTTT
66 ATATCAAATTTACAGCATAACTCAAGACGAGAAGGGTTATCTGTTAA-TAAAAACCTTCGAGTTC
* * *
41304 GATTATATTCAGCTCAAAGGCACATCAAATTTACATCATAG
130 GATTACATTCAGCTCAAAGGCATATCAAATTTACATCATAA
*
41345 CTCAAGGCGAGAAGGGCTATCTGTCAACCAAGACCTTTGAGTTCGATTACATTCAGCTCAAGGGC
1 CTCAAGGAGAGAAGGGCTATCTGTCAACCAAGACCTTTGAGTTCGATTACATTCAGCTCAAGGGC
* * * *
41410 ATATCAAATTTACAACATAACTCAAGGCGATAAGGGTTATTTGTTAATAAAAACCTTCGAGTTCG
66 ATATCAAATTTACAGCATAACTCAAGACGAGAAGGGTTATCTGTTAATAAAAACCTTCGAGTTCG
* * * *
41475 ATTACATTCAGCTCAAGGGCATATCAAATTTATAGCAGAA
131 ATTACATTCAGCTCAAAGGCATATCAAATTTACATCATAA
* * * * ** * * *
41515 CTTAAGGAGAAAAGGGTTATCTGTTAATAAAAACCTTAT-AGTTCAATTAAATTCAGCTCAAGGG
1 CTCAAGGAGAGAAGGGCTATCTGTCAACCAAGACCTT-TGAGTTCGATTACATTCAGCTCAAGGG
* * **
41579 CATATAAAATTTACAGCACAACTCAAGATAAGAAGGGTTATCTGTTAATAAAAACCTTCGAGTTC
65 CATATCAAATTTACAGCATAACTCAAGACGAGAAGGGTTATCTGTTAATAAAAACCTTCGAGTTC
*
41644 GATTACATTCAGCTTTAGAA--CATATCAAATTTACATCATAA
130 GATTACATTCAGC-TCA-AAGGCATATCAAATTTACATCATAA
* * * * * *
41685 CTCAAAGGCGATAAGAGTTATCTGTCAA-CAAGAACTTTCGAGATCGAT
1 CTC-AAGGAGAGAAGGGCTATCTGTCAACCAAGACCTTT-GAGTTCGAT
41733 CCTGTTCAGC
Statistics
Matches: 325, Mismatches: 56, Indels: 13
0.82 0.14 0.03
Matches are distributed among these distances:
169 5 0.02
170 290 0.89
171 29 0.09
172 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (170 bp):
CTCAAGGAGAGAAGGGCTATCTGTCAACCAAGACCTTTGAGTTCGATTACATTCAGCTCAAGGGC
ATATCAAATTTACAGCATAACTCAAGACGAGAAGGGTTATCTGTTAATAAAAACCTTCGAGTTCG
ATTACATTCAGCTCAAAGGCATATCAAATTTACATCATAA
Found at i:41645 original size:255 final size:256
Alignment explanation
Indices: 41207--41732 Score: 608
Period size: 255 Copynumber: 2.1 Consensus size: 256
41197 GCCAACCAAG
* * * * *
41207 ACCTTTGAGTTCGATTACATTCAGCTCAAAGGCACATCAAGTTTACAGCATAGCTCAAGACGAGA
1 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCAAATTTACAGCAGAACTCAAGACGAAA
* * ** * *
41272 AGGGCTATCTGTCAACCAAGAACTTCGAGTTTGATTATATTCAGCTCAAAGGCACATCAAATTTA
66 AGGGCTATCTGTCAACCAAAAACTTAGAGTTCAATTAAATTCAGCTCAAAGGCACATAAAATTTA
* * * * * * * *
41337 CATCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACCAAGACCTTTGAGTTCGATTACATTCAGC
131 CAGCACAACTCAAGACAAGAAGGGCTATCTGTCAACAAAAACCTTCGAGTTCGATTACATTCAGC
** * * * *
41402 TCAAGGGCATATCAAATTTACAACATAACTC-AAGGCGATAAGGGTTATTTGTTAATAAAA
196 TCAAGAACATATCAAATTTACAACATAACTCAAAGGCGATAAGAGTTATCTGTCAACAAAA
* * * *
41462 ACCTTCGAGTTCGATTACATTCAGCTCAAGGGCATATCAAATTTATAGCAGAACTTAAGGA-GAA
1 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCAAATTTACAGCAGAACTCAA-GACGAA
* * * * * *
41526 AAGGGTTATCTGTTAA-TAAAAACCTTATAGTTCAATTAAATTCAGCTCAAGGGCATATAAAATT
65 AAGGGCTATCTGTCAACCAAAAA-CTTAGAGTTCAATTAAATTCAGCTCAAAGGCACATAAAATT
* * * *
41590 TACAGCACAACTCAAGATAAGAAGGGTTATCTGTTAATAAAAACCTTCGAGTTCGATTACATTCA
129 TACAGCACAACTCAAGACAAGAAGGGCTATCTGTCAACAAAAACCTTCGAGTTCGATTACATTCA
** * *
41655 GCTTTAGAACATATCAAATTTACATCATAACTCAAAGGCGATAAGAGTTATCTGTCAACAAGA
194 GCTCAAGAACATATCAAATTTACAACATAACTCAAAGGCGATAAGAGTTATCTGTCAACAAAA
* *
41718 ACTTTCGAGATCGAT
1 ACCTTCGAGTTCGAT
41733 CCTGTTCAGC
Statistics
Matches: 223, Mismatches: 45, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
254 4 0.02
255 180 0.81
256 39 0.17
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (256 bp):
ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCAAATTTACAGCAGAACTCAAGACGAAA
AGGGCTATCTGTCAACCAAAAACTTAGAGTTCAATTAAATTCAGCTCAAAGGCACATAAAATTTA
CAGCACAACTCAAGACAAGAAGGGCTATCTGTCAACAAAAACCTTCGAGTTCGATTACATTCAGC
TCAAGAACATATCAAATTTACAACATAACTCAAAGGCGATAAGAGTTATCTGTCAACAAAA
Found at i:43514 original size:11 final size:11
Alignment explanation
Indices: 43498--43542 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
43488 TATTTATTTG
43498 TTTTTTTGTTT
1 TTTTTTTGTTT
43509 TTTTTTTG-TT
1 TTTTTTTGTTT
**
43519 TTTTTGGGTTT
1 TTTTTTTGTTT
43530 TTATTTTTGTTT
1 TT-TTTTTGTTT
43542 T
1 T
43543 AGTTTTTTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
10 8 0.29
11 12 0.43
12 8 0.29
ACGTcount: A:0.02, C:0.00, G:0.13, T:0.84
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:43523 original size:22 final size:22
Alignment explanation
Indices: 43494--43542 Score: 77
Period size: 19 Copynumber: 2.4 Consensus size: 22
43484 TATTTATTTA
43494 TTTGTTTTTTT--GTTTTT-TT
1 TTTGTTTTTTTGGGTTTTTATT
43513 TTTGTTTTTTTGGGTTTTTATT
1 TTTGTTTTTTTGGGTTTTTATT
43535 TTTGTTTT
1 TTTGTTTT
43543 AGTTTTTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.41
21 6 0.22
22 10 0.37
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (22 bp):
TTTGTTTTTTTGGGTTTTTATT
Found at i:43549 original size:19 final size:19
Alignment explanation
Indices: 43490--43550 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
43480 TATTTATTTA
*
43490 TTTATTTGTTTTTTTGTTT
1 TTTATTTGTTTTTTAGTTT
* * *
43509 TTTTTTTGTTTTTTTGGGTT
1 TTTATTTG-TTTTTTAGTTT
43529 TTTATTT-TTGTTTTAGTTT
1 TTTATTTGTT-TTTTAGTTT
43548 TTT
1 TTT
43551 CCTTTTTTCT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
18 2 0.06
19 17 0.50
20 15 0.44
ACGTcount: A:0.05, C:0.00, G:0.13, T:0.82
Consensus pattern (19 bp):
TTTATTTGTTTTTTAGTTT
Found at i:43709 original size:2 final size:2
Alignment explanation
Indices: 43702--43755 Score: 63
Period size: 2 Copynumber: 26.5 Consensus size: 2
43692 TTATTTTTAT
* * *
43702 TA TA TA TA TA TA TA TA TA TC TT TCA TT TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
*
43745 TA TA TA AA TA T
1 TA TA TA TA TA T
43756 TAGTTTTGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 43 0.98
3 1 0.02
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:43878 original size:25 final size:25
Alignment explanation
Indices: 43850--43903 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
43840 TTGCTGTTAT
43850 TTTTGTTTT-TTTTGTTTTTTATTCA
1 TTTTGTTTTGTTTTG-TTTTTATTCA
*
43875 TTTTGTTTTGTTTTGTTTTTATTTA
1 TTTTGTTTTGTTTTGTTTTTATTCA
43900 TTTT
1 TTTT
43904 ACCATTTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 22 0.81
26 5 0.19
ACGTcount: A:0.07, C:0.02, G:0.09, T:0.81
Consensus pattern (25 bp):
TTTTGTTTTGTTTTGTTTTTATTCA
Found at i:44006 original size:17 final size:17
Alignment explanation
Indices: 43915--44013 Score: 60
Period size: 17 Copynumber: 5.6 Consensus size: 17
43905 CCATTTTAGC
* *
43915 TTATTTTGTTTTATTC-
1 TTATTTTATTTTTTTCT
*
43931 TTATTTTTATCTTTATTCTAT
1 TTA-TTTTAT-TTT-TT-TCT
**
43952 TTATTTTATTACTTTCT
1 TTATTTTATTTTTTTCT
* *
43969 TTCTTTTATCGTTTTAT-T
1 TTATTTTAT--TTTTTTCT
43987 TTATTTTATTTTTTTCT
1 TTATTTTATTTTTTTCT
44004 TTA-TTTATTT
1 TTATTTTATTT
44014 ATTTAGCCAT
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
16 15 0.24
17 19 0.30
18 14 0.22
19 5 0.08
20 7 0.11
21 3 0.05
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.75
Consensus pattern (17 bp):
TTATTTTATTTTTTTCT
Found at i:44015 original size:30 final size:30
Alignment explanation
Indices: 43923--44017 Score: 97
Period size: 30 Copynumber: 3.1 Consensus size: 30
43913 GCTTATTTTG
*
43923 TTTTATTCTTATTTTTATCTTTATTCTATTTA
1 TTTTATT-TTATTTTTTTCTTTATT-TATTTA
* *
43955 TTTTA--TTACTTTCTTTCTTTTATCGT-TTTA
1 TTTTATTTTA-TTTTTTTC-TTTAT-TTATTTA
43985 TTTTATTTTATTTTTTTCTTTATTTATTTA
1 TTTTATTTTATTTTTTTCTTTATTTATTTA
44015 TTT
1 TTT
44018 AGCCATGTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
29 4 0.08
30 27 0.52
31 13 0.25
32 8 0.15
ACGTcount: A:0.16, C:0.08, G:0.01, T:0.75
Consensus pattern (30 bp):
TTTTATTTTATTTTTTTCTTTATTTATTTA
Found at i:44872 original size:19 final size:19
Alignment explanation
Indices: 44848--44951 Score: 127
Period size: 19 Copynumber: 5.5 Consensus size: 19
44838 TATGCATTTG
44848 GCTATGAATTTGAAAATAA
1 GCTATGAATTTGAAAATAA
44867 GCTATGAATTTGAAAATAA
1 GCTATGAATTTGAAAATAA
*
44886 ACTATGAATTTGAAAATAA
1 GCTATGAATTTGAAAATAA
* * * *
44905 ACTATCAATTTGACAGTAA
1 GCTATGAATTTGAAAATAA
* * *
44924 GCTAAGAGTCTGAAAATAA
1 GCTATGAATTTGAAAATAA
*
44943 GTTATGAAT
1 GCTATGAAT
44952 CTAGAAATAA
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 71 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (19 bp):
GCTATGAATTTGAAAATAA
Found at i:44978 original size:19 final size:19
Alignment explanation
Indices: 44935--44987 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
44925 CTAAGAGTCT
*
44935 GAAAATAAGTTATGAATCTA
1 GAAAATAAGTTCTG-ATCTA
*
44955 G-AAATAAGTTCTGATTTA
1 GAAAATAAGTTCTGATCTA
*
44973 GAAAATAAATTCTGA
1 GAAAATAAGTTCTGA
44988 AATATGAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 5 0.17
19 23 0.79
20 1 0.03
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (19 bp):
GAAAATAAGTTCTGATCTA
Found at i:47090 original size:13 final size:13
Alignment explanation
Indices: 47074--47116 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
47064 GTCATAAATC
47074 TATGACGCGT-ATT
1 TATGACGC-TCATT
*
47087 TATGACACTCATT
1 TATGACGCTCATT
*
47100 TATGACGCACATT
1 TATGACGCTCATT
47113 TATG
1 TATG
47117 GCGTGCATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
12 1 0.04
13 25 0.96
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (13 bp):
TATGACGCTCATT
Found at i:56272 original size:19 final size:19
Alignment explanation
Indices: 56247--56349 Score: 136
Period size: 19 Copynumber: 5.4 Consensus size: 19
56237 TATGCATTGG
56247 GCTATGAATTTGAAAAT-A
1 GCTATGAATTTGAAAATAA
56265 GACTATGAATTTGAAAATAA
1 G-CTATGAATTTGAAAATAA
56285 GCTATGAATTTGAAAATAA
1 GCTATGAATTTGAAAATAA
* * * *
56304 GTTATGAATCTGACAGTAA
1 GCTATGAATTTGAAAATAA
*
56323 GCTATGAGTTTGAAAATAA
1 GCTATGAATTTGAAAATAA
*
56342 GTTATGAA
1 GCTATGAA
56350 CCTGGAAATA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
18 1 0.01
19 69 0.96
20 2 0.03
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (19 bp):
GCTATGAATTTGAAAATAA
Found at i:56298 original size:38 final size:38
Alignment explanation
Indices: 56247--56361 Score: 142
Period size: 38 Copynumber: 3.0 Consensus size: 38
56237 TATGCATTGG
*
56247 GCTATGAATTTGAAAAT-AGACTATGAATTTGAAAATAA
1 GCTATGAATTTGAAAATAAG-CTATGAATCTGAAAATAA
* * *
56285 GCTATGAATTTGAAAATAAGTTATGAATCTGACAGTAA
1 GCTATGAATTTGAAAATAAGCTATGAATCTGAAAATAA
* * * *
56323 GCTATGAGTTTGAAAATAAGTTATGAACCTGGAAATAA
1 GCTATGAATTTGAAAATAAGCTATGAATCTGAAAATAA
56361 G
1 G
56362 TTCTAATTCA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
38 65 0.97
39 2 0.03
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.30
Consensus pattern (38 bp):
GCTATGAATTTGAAAATAAGCTATGAATCTGAAAATAA
Found at i:58004 original size:25 final size:25
Alignment explanation
Indices: 57970--58026 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
57960 TAATACCCCG
57970 AATTTTGGTTAGTGACCAAAATGTA
1 AATTTTGGTTAGTGACCAAAATGTA
*
57995 AATTTTGGTTAGTGATCAAAATGTA
1 AATTTTGGTTAGTGACCAAAATGTA
58020 AATTTTG
1 AATTTTG
58027 AAAGATTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.40
Consensus pattern (25 bp):
AATTTTGGTTAGTGACCAAAATGTA
Found at i:60092 original size:21 final size:21
Alignment explanation
Indices: 60051--60099 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
60041 AAATTAACAG
*
60051 TTATTTTAAATCATATCAATA
1 TTATTTTAAATAATATCAATA
*
60072 TT-TTTTAAATTAATATTAATA
1 TTATTTTAAA-TAATATCAATA
60093 TTATTTT
1 TTATTTT
60100 TATTTTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.29
21 13 0.54
22 4 0.17
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (21 bp):
TTATTTTAAATAATATCAATA
Found at i:61787 original size:52 final size:53
Alignment explanation
Indices: 61722--61829 Score: 173
Period size: 52 Copynumber: 2.0 Consensus size: 53
61712 CACAAGATGG
*
61722 GGCACATAGAAATAGGAAACTAGCCTAGAGTTAAGGGATTACAACTAATTACAA
1 GGCACATA-AAATAGGAAACTAGCCTAGAGTTAAGGGATTACAACTAATCACAA
* *
61776 GGCACAT-AAATAGGAGACTAGCCTAGAGTTAGGGGATTACAACTAATCACAA
1 GGCACATAAAATAGGAAACTAGCCTAGAGTTAAGGGATTACAACTAATCACAA
61828 GG
1 GG
61830 ATATTATAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
52 44 0.86
54 7 0.14
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (53 bp):
GGCACATAAAATAGGAAACTAGCCTAGAGTTAAGGGATTACAACTAATCACAA
Found at i:66358 original size:52 final size:53
Alignment explanation
Indices: 66293--66398 Score: 142
Period size: 52 Copynumber: 2.0 Consensus size: 53
66283 CACAAGATGG
* *
66293 GGCACATAGAAATAAGAAACTAGCATAGAGTTAGGGGATTACAACTAATTACAA
1 GGCACATA-AAATAAGAAACTAGCATAGAATTAGGGGATTACAACTAATCACAA
* * * *
66347 GGCACAT-AAATAGGAGACTAGCCTAGAATTAGGGGATTATAACTAATCACAA
1 GGCACATAAAATAAGAAACTAGCATAGAATTAGGGGATTACAACTAATCACAA
66399 AGATATTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
52 39 0.85
54 7 0.15
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (53 bp):
GGCACATAAAATAAGAAACTAGCATAGAATTAGGGGATTACAACTAATCACAA
Found at i:79833 original size:83 final size:78
Alignment explanation
Indices: 79700--79918 Score: 172
Period size: 83 Copynumber: 2.7 Consensus size: 78
79690 CAACAGATGA
* * * ** * *
79700 AACCTATTACGGCGTTTGTAAAAAAACGCTGCTAAAGTACTAAACTTTTGCGGCG-TTCGTGAGA
1 AACCTATTTC-GCGTTTGT-ATAAAACGC-GCTAAAGTAGTACTCCTTTGCGGCGCTT-AT-AG-
*
79764 AAAAATGCCACTATAGGTT
60 AAAAATGCCACTATAGGTG
* *
79783 AACCTATTTCGTCGTTTGTATAACAACGTCGCTAAAGTAGTACTCCTTTGCGTCGCTTATTGAAA
1 AACCTATTTCG-CGTTTGTATAA-AACG-CGCTAAAGTAGTACTCCTTTGCGGCGCTTATAGAAA
*
79848 AATGTCACTATAGGTG
63 AATGCCACTATAGGTG
* * *
79864 AACC-ATATCGCGAATTTTGTATAAATATGCCGCTAAAGTAGTACTCCTTTACGGC
1 AACCTATTTCGCG---TTTGTATAAA-ACG-CGCTAAAGTAGTACTCCTTTGCGGC
79919 ATTTTTTGAA
Statistics
Matches: 112, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
79 2 0.02
80 5 0.04
81 22 0.20
82 39 0.35
83 41 0.37
84 3 0.03
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Consensus pattern (78 bp):
AACCTATTTCGCGTTTGTATAAAACGCGCTAAAGTAGTACTCCTTTGCGGCGCTTATAGAAAAAT
GCCACTATAGGTG
Found at i:79928 original size:82 final size:82
Alignment explanation
Indices: 79812--80010 Score: 208
Period size: 82 Copynumber: 2.4 Consensus size: 82
79802 ATAACAACGT
* ** * *
79812 CGCTAAAGTAGTACTCCTTTGCGTCGCTTATTG-AAAAATGTCACTATAGG-TGAACCATATCGC
1 CGCTAAAGTAGTACTCCTTTGCGGCATTTTTTGAAAAAATGACACTAT-GGATGAACC-TATCGC
79875 GAAT-TTTGTATA-AATATGC
64 -AATGTTTGTATACAA-ATGC
* * * *
79894 CGCTAAAGTAGTACTCCTTTACGGCATTTTTTGAAAAAATGACACTATGGATGTACCTATGGCAG
1 CGCTAAAGTAGTACTCCTTTGCGGCATTTTTTGAAAAAATGACACTATGGATGAACCTATCGCAA
79959 TGTTTGTATACAAATGC
66 TGTTTGTATACAAATGC
* *
79976 CGCTAAAAAACTACTACTCCTTTGCGGCATTTTTT
1 CGCT---AAAGTAGTACTCCTTTGCGGCATTTTTT
80011 TTATAAAAAC
Statistics
Matches: 98, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
81 2 0.02
82 51 0.52
83 20 0.20
85 25 0.26
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (82 bp):
CGCTAAAGTAGTACTCCTTTGCGGCATTTTTTGAAAAAATGACACTATGGATGAACCTATCGCAA
TGTTTGTATACAAATGC
Found at i:89421 original size:24 final size:24
Alignment explanation
Indices: 89372--89430 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
89362 TTATGTTTCA
*
89372 ATTTCTGATATGAATTCTATTTTG
1 ATTTCTGATATGAATTCTATTCTG
* * *
89396 ATTTCTGATCTGGATTCTGTTCTG
1 ATTTCTGATATGAATTCTATTCTG
* *
89420 ATATATGATAT
1 ATTTCTGATAT
89431 ATGATATGAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.24, C:0.10, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTTCTGATATGAATTCTATTCTG
Found at i:93889 original size:24 final size:24
Alignment explanation
Indices: 93809--93882 Score: 94
Period size: 24 Copynumber: 3.1 Consensus size: 24
93799 GTTTTATCTT
* *
93809 ATTTCCGATTTGAATTATGTTCTG
1 ATTTCTGATCTGAATTATGTTCTG
* * *
93833 ATTTCTTATCTGAATTCTGTTTTG
1 ATTTCTGATCTGAATTATGTTCTG
*
93857 ATTTCTGATCTGGATTATGTTCTG
1 ATTTCTGATCTGAATTATGTTCTG
93881 AT
1 AT
93883 ATATGATATA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.19, C:0.12, G:0.16, T:0.53
Consensus pattern (24 bp):
ATTTCTGATCTGAATTATGTTCTG
Found at i:98675 original size:6 final size:6
Alignment explanation
Indices: 98659--98767 Score: 69
Period size: 6 Copynumber: 17.3 Consensus size: 6
98649 TCTCTCATTT
* * * *
98659 TTTTCTC TTTTTC -TTTTC TTTCTC GTTTTCATT TTTTTC TTCTTC GTTTTC
1 TTTT-TC TTTTTC TTTTTC TTTTTC -TTTT--TC TTTTTC TTTTTC TTTTTC
* * *
98710 ATTTTC TTTTTC TATTTT- TTTTTC TTTTTC TGTTTTT TTTCTTC TGTTTC
1 TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC T-TTTTC TTT-TTC TTTTTC
*
98760 TTCTTC TT
1 TTTTTC TT
98768 CTTATAATAT
Statistics
Matches: 80, Mismatches: 14, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
5 9 0.11
6 46 0.57
7 20 0.25
8 4 0.05
9 1 0.01
ACGTcount: A:0.03, C:0.18, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTTTC
Found at i:98701 original size:20 final size:22
Alignment explanation
Indices: 98672--98722 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
98662 TCTCTTTTTC
98672 TTTTCTTTC-TCGTTTTCATTT
1 TTTTCTTTCTTCGTTTTCATTT
98693 TTTTC-TTCTTCGTTTTCATTT
1 TTTTCTTTCTTCGTTTTCATTT
*
98714 TCTT-TTTCT
1 TTTTCTTTCT
98723 ATTTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 3 0.11
21 24 0.89
ACGTcount: A:0.04, C:0.20, G:0.04, T:0.73
Consensus pattern (22 bp):
TTTTCTTTCTTCGTTTTCATTT
Found at i:98709 original size:33 final size:33
Alignment explanation
Indices: 98657--98735 Score: 92
Period size: 33 Copynumber: 2.4 Consensus size: 33
98647 CATCTCTCAT
*
98657 TTTTTTCTCTTTTTCTTTTC-TTTCTCGTTTTC-A
1 TTTTTT-TCTTCTTCTTTTCATTT-TCGTTTTCTA
*
98690 TTTTTTTCTTCTTCGTTTTCATTTTCTTTTTCTA
1 TTTTTTTCTTCTTC-TTTTCATTTTCGTTTTCTA
98724 TTTTTTT-TTCTT
1 TTTTTTTCTTCTT
98736 TTTCTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
32 7 0.17
33 23 0.56
34 11 0.27
ACGTcount: A:0.04, C:0.18, G:0.03, T:0.76
Consensus pattern (33 bp):
TTTTTTTCTTCTTCTTTTCATTTTCGTTTTCTA
Found at i:98745 original size:17 final size:16
Alignment explanation
Indices: 98656--98752 Score: 79
Period size: 17 Copynumber: 5.8 Consensus size: 16
98646 TCATCTCTCA
*
98656 TTTTTTTCTCTTTTTC
1 TTTTTTTTTCTTTTTC
* *
98672 TTTTCTTTCTCGTTTTC
1 TTTT-TTTTTCTTTTTC
* *
98689 -ATTTTTTTCTTCTTC
1 TTTTTTTTTCTTTTTC
*
98704 GTTTTCATTTTCTTTTTC
1 -TTTT-TTTTTCTTTTTC
98722 TATTTTTTTTTCTTTTTC
1 --TTTTTTTTTCTTTTTC
98740 TGTTTTTTTTCTT
1 T-TTTTTTTTCTT
98753 CTGTTTCTTC
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
15 9 0.14
16 7 0.11
17 24 0.37
18 21 0.32
19 4 0.06
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTTTTTTCTTTTTC
Found at i:101513 original size:24 final size:24
Alignment explanation
Indices: 101407--101515 Score: 87
Period size: 24 Copynumber: 4.5 Consensus size: 24
101397 ATGTTTTATC
* * * *
101407 TGATTTCCGATTTGAATTATGTTC
1 TGATTTCTGATATGAATTTTGTTT
* * *
101431 TGA-TACTTGATCTGAATTCTGTTT
1 TGATTTC-TGATATGAATTTTGTTT
** *
101455 TGATTTCTGACCTGTATTCTT-TTT
1 TGATTTCTGATATGAATT-TTGTTT
*
101479 TGATATCTGATATGAATTTTGTTT
1 TGATTTCTGATATGAATTTTGTTT
101503 TGATTTCTGATAT
1 TGATTTCTGATAT
101516 CTCCGTTTAT
Statistics
Matches: 67, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
23 4 0.06
24 60 0.90
25 3 0.04
ACGTcount: A:0.20, C:0.11, G:0.16, T:0.53
Consensus pattern (24 bp):
TGATTTCTGATATGAATTTTGTTT
Found at i:103991 original size:23 final size:22
Alignment explanation
Indices: 103918--103991 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 22
103908 CATAGCATTT
103918 TGCATCGATGCACATTCAAGGA
1 TGCATCGATGCACATTCAAGGA
* * * *
103940 GTGCAT-TAGTGCGCCTTCATGG-
1 -TGCATCGA-TGCACATTCAAGGA
*
103962 TGTATCGATGCACATTCAAGAGA
1 TGCATCGATGCACATTCAAG-GA
103985 TGCATCG
1 TGCATCG
103992 GTACACTCTC
Statistics
Matches: 37, Mismatches: 10, Indels: 8
0.67 0.18 0.15
Matches are distributed among these distances:
21 13 0.35
22 3 0.08
23 21 0.57
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (22 bp):
TGCATCGATGCACATTCAAGGA
Found at i:112611 original size:39 final size:37
Alignment explanation
Indices: 112542--112627 Score: 86
Period size: 37 Copynumber: 2.2 Consensus size: 37
112532 TATATTATAC
112542 ATATATATATGTTAATTTTCATTATCTTTTTTATTAAATT
1 ATATATATATGTTAATTTT-ATTATC-TTTTTATT-AATT
* *
112582 ATATATATAT-TTACTATTTT-TTATGTTTTTATTTATT
1 ATATATATATGTTA--ATTTTATTATCTTTTTATTAATT
*
112619 TTATATATA
1 ATATATATA
112628 CATATTATCA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
37 11 0.27
38 8 0.20
39 7 0.17
40 10 0.24
41 5 0.12
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (37 bp):
ATATATATATGTTAATTTTATTATCTTTTTATTAATT
Found at i:112813 original size:4 final size:4
Alignment explanation
Indices: 112804--112851 Score: 64
Period size: 4 Copynumber: 12.0 Consensus size: 4
112794 TGTCTTTTGT
112804 TTTA TTTA TTTA TTTA TTTA TTTCA TTTA TTTA -TT- TTTA TTTAA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTT-A TTTA TTTA TTTA TTTA TTT-A TTTA
112852 CTTGTTATCG
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 4 0.10
4 28 0.70
5 8 0.20
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:116027 original size:14 final size:13
Alignment explanation
Indices: 116010--116059 Score: 59
Period size: 14 Copynumber: 3.8 Consensus size: 13
116000 CAAAAAGAAA
116010 AAAGAGAAAAAAGC
1 AAAGAGAAAAAA-C
116024 AAAGAGAAAATAA-
1 AAAGAGAAAA-AAC
116037 AAAGAGAAAAAAAC
1 AAAGAG-AAAAAAC
116051 AAAG-GAAAA
1 AAAGAGAAAA
116060 TTGAAGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 4 0.12
13 9 0.27
14 18 0.55
15 2 0.06
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.02
Consensus pattern (13 bp):
AAAGAGAAAAAAC
Found at i:116040 original size:13 final size:14
Alignment explanation
Indices: 116010--116060 Score: 63
Period size: 13 Copynumber: 3.8 Consensus size: 14
116000 CAAAAAGAAA
116010 AAAGAGAAAA-AAGC
1 AAAGAGAAAATAA-C
116024 AAAGAGAAAATAA-
1 AAAGAGAAAATAAC
*
116037 AAAGAGAAAAAAAC
1 AAAGAGAAAATAAC
116051 AAAG-GAAAAT
1 AAAGAGAAAAT
116061 TGAAGAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
13 17 0.52
14 14 0.42
15 2 0.06
ACGTcount: A:0.75, C:0.04, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAGAAAATAAC
Found at i:116043 original size:27 final size:26
Alignment explanation
Indices: 116008--116060 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
115998 AACAAAAAGA
*
116008 AAAAAGAGAAAAAAGCAAAGAGAAAAT
1 AAAAAGAGAAAAAAACAAAG-GAAAAT
116035 AAAAAGAGAAAAAAACAAAGGAAAAT
1 AAAAAGAGAAAAAAACAAAGGAAAAT
116061 TGAAGAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.75, C:0.04, G:0.17, T:0.04
Consensus pattern (26 bp):
AAAAAGAGAAAAAAACAAAGGAAAAT
Found at i:116250 original size:69 final size:69
Alignment explanation
Indices: 116131--116268 Score: 213
Period size: 69 Copynumber: 2.0 Consensus size: 69
116121 GATTCAAACT
* **
116131 ATGAGATTGATCAAGCATAATCATTTCTGAATCACTGAACCACTTTACTCGAAGATCATAGAGCA
1 ATGAGATTGATCAAGCACAATCATTTCTGAATCACTGAACCACTCCACTCGAAGATCATAGAGCA
116196 TCAA
66 TCAA
* * * *
116200 ATGAGATTGATCAAGCACAATCATTTCTGAATTACTGAATCACTCCACTCGAAGATCATGGAGGA
1 ATGAGATTGATCAAGCACAATCATTTCTGAATCACTGAACCACTCCACTCGAAGATCATAGAGCA
116265 TCAA
66 TCAA
116269 GAGAGAGACA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (69 bp):
ATGAGATTGATCAAGCACAATCATTTCTGAATCACTGAACCACTCCACTCGAAGATCATAGAGCA
TCAA
Found at i:117244 original size:31 final size:32
Alignment explanation
Indices: 117198--117277 Score: 101
Period size: 31 Copynumber: 2.5 Consensus size: 32
117188 TGAGGGCATC
117198 TTTGAAGATTCAACATCAAATGCTAG-GGCATTT
1 TTTG-AGATTCAACATCAAATG-TAGAGGCATTT
* * *
117231 TTT-AGATTTAACATCAAATGTTGAGGTATTT
1 TTTGAGATTCAACATCAAATGTAGAGGCATTT
117262 TTTGAGATTCAACATC
1 TTTGAGATTCAACATC
117278 GAATATTGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 2 0.05
31 25 0.61
32 11 0.27
33 3 0.07
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (32 bp):
TTTGAGATTCAACATCAAATGTAGAGGCATTT
Found at i:117588 original size:35 final size:35
Alignment explanation
Indices: 117547--117625 Score: 142
Period size: 35 Copynumber: 2.3 Consensus size: 35
117537 ACAATTTATA
117547 TTGAAACACAAAAAAAACCTTTGAA-ATTGTTTCTC
1 TTGAAACACAAAAAAAACCTTTGAAGA-TGTTTCTC
117582 TTGAAACACAAAAAAAACCTTTGAAGATGTTTCTC
1 TTGAAACACAAAAAAAACCTTTGAAGATGTTTCTC
117617 TTGAAACAC
1 TTGAAACAC
117626 CAAACCCTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
35 42 0.98
36 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29
Consensus pattern (35 bp):
TTGAAACACAAAAAAAACCTTTGAAGATGTTTCTC
Found at i:119046 original size:4 final size:4
Alignment explanation
Indices: 119037--119063 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
119027 TGTCTTTTGT
119037 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
119064 CGTTTCTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:119100 original size:33 final size:31
Alignment explanation
Indices: 119045--119114 Score: 77
Period size: 33 Copynumber: 2.2 Consensus size: 31
119035 GTTTTATTTA
* **
119045 TTTATTTATTTATTTATTTCGTTTCTTTATT
1 TTTATTTATTTACTTATTTCGTTAATTTATT
*
119076 TTTATTTAATTTACTTGTTATCGTTAATTTATT
1 TTTATTT-ATTTACTTATT-TCGTTAATTTATT
*
119109 ATTATT
1 TTTATT
119115 CTTTCCTTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 7 0.22
32 9 0.28
33 16 0.50
ACGTcount: A:0.21, C:0.06, G:0.04, T:0.69
Consensus pattern (31 bp):
TTTATTTATTTACTTATTTCGTTAATTTATT
Found at i:119971 original size:134 final size:134
Alignment explanation
Indices: 119801--120124 Score: 481
Period size: 134 Copynumber: 2.4 Consensus size: 134
119791 GAAGTCTGGC
* * * *
119801 TATCTAAGGGTGACACGGCTCCTACGTAATGAGGAGATATGGTAGGTGGATGACACGATTCCTAT
1 TATCTAGGGGTGACACGGCTCCTACGTGATGAGGAGATCTGGTCGGTGGATGACACGATTCCTAT
* * *
119866 GTGATAAGGATAG-CTGGCCATCTTTAGGGATGTTGATAACATGGTTCCTAAGTGATGAGAATGA
66 GTGATAAGGAT-GCCTGGCCATCTTTAGGGATATTGATAACACGATTCCTAAGTGATGAGAATGA
*
119930 CT-AGT
130 ATGA-T
* * *
119935 TATCTAGGGGTGACACGGTTCCTAAGTGATGAGGAGATCTTGTCGGTGGATGACACGATTCCTAT
1 TATCTAGGGGTGACACGGCTCCTACGTGATGAGGAGATCTGGTCGGTGGATGACACGATTCCTAT
*
120000 GTGATAAGGATGCCTGGCCATCTTTAGGGATATTGATAACACGATTCCTAAGTGATGAGGATGAA
66 GTGATAAGGATGCCTGGCCATCTTTAGGGATATTGATAACACGATTCCTAAGTGATGAGAATGAA
120065 TGAT
131 TGAT
* *
120069 TATCTAGGGGGTGACACGACTCCTACGTGATGAGGAGATCTGGTCGGGGGATGACA
1 TATCTA-GGGGTGACACGGCTCCTACGTGATGAGGAGATCTGGTCGGTGGATGACA
120125 TGGTTCTTAC
Statistics
Matches: 170, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
133 1 0.01
134 124 0.73
135 45 0.26
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (134 bp):
TATCTAGGGGTGACACGGCTCCTACGTGATGAGGAGATCTGGTCGGTGGATGACACGATTCCTAT
GTGATAAGGATGCCTGGCCATCTTTAGGGATATTGATAACACGATTCCTAAGTGATGAGAATGAA
TGAT
Found at i:120410 original size:66 final size:66
Alignment explanation
Indices: 120300--120587 Score: 352
Period size: 66 Copynumber: 4.4 Consensus size: 66
120290 TAGGGATTTA
* * * * ** *
120300 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGGGAAATAATTTCAAATATGGGT
1 TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTGGT
120365 G
66 G
* * *
120366 TTTTAAGAGAAATTGTCTCAAGGGAGACAAAACTTGTTTCAAGGGAAACAATCTCAAAGGTTGGT
1 TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTGGT
120431 G
66 G
* * *
120432 TTTCATGAGAAACTGTCTCAAGGGAGACAAATTTTTTTTCAAGGGAAACAATCTCAAAGGTTGGT
1 TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTGGT
120497 G
66 G
* ** * *
120498 TTTCATGTCAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACAATTTCAAA-GTT--T
1 TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTGGT
120560 G
66 G
*
120561 TCTT-AAG-GAAGACTGTCTCAAGTGAGA
1 T-TTCAAGAGAA-ACTGTCTCAAGGGAGA
120588 TAATGTTTTT
Statistics
Matches: 195, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
62 2 0.01
63 20 0.10
64 2 0.01
65 3 0.02
66 168 0.86
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (66 bp):
TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTGGT
G
Found at i:120734 original size:103 final size:97
Alignment explanation
Indices: 120507--120745 Score: 239
Period size: 97 Copynumber: 2.4 Consensus size: 97
120497 GTTTCATGTC
* ** * *
120507 AAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACAATTTCAAAGTTTGTCTTAAGGAAG
1 AAACTGTCTCAAGTGAGACAAAATTTGTTTCAAGAGAAACAAACTCAAAGTTTGTCTAAAGGAAA
* *
120572 ACTGTCTCAAGTGAGATAATGTTTTTTTAGAA
66 AATGTCTCAAGCGAGATAATGTTTTTTTAGAA
** * * * *
120604 AAACAATCTCAAGTGAGATC-AACTTTGTTTCAGGTGAAACAAACTCAAAATTTGTGTCTCAAAG
1 AAACTGTCTCAAGTGAGA-CAAAATTTGTTTCAAGAGAAACAAACTC-AAAGTT-TGTCT-AAAG
*
120668 GAAAAATGTCTCAAGCGAGATGAAAT-TTGTTTTTGAGAG
62 GAAAAATGTCTCAAGCGAGAT--AATGTT-TTTTT-AGAA
* **
120707 AAATTGTCTCAAGTGAGACAAAATTTGTTTTTAGAGAAA
1 AAACTGTCTCAAGTGAGACAAAATTTGTTTCAAGAGAAA
120746 ACTGTCTCAA
Statistics
Matches: 111, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
97 36 0.32
98 6 0.05
99 5 0.05
100 21 0.19
101 2 0.02
102 9 0.08
103 32 0.29
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (97 bp):
AAACTGTCTCAAGTGAGACAAAATTTGTTTCAAGAGAAACAAACTCAAAGTTTGTCTAAAGGAAA
AATGTCTCAAGCGAGATAATGTTTTTTTAGAA
Found at i:120808 original size:74 final size:74
Alignment explanation
Indices: 120668--120819 Score: 189
Period size: 74 Copynumber: 2.1 Consensus size: 74
120658 TGTCTCAAAG
** * *
120668 GAAAAATGTCTCAAGCGAGATGAAATTTGTTTTTGAGAGAAATTGTCTCAAGTGAGACAAAATTT
1 GAAAAATGTCTCAAGCGAGACAAAATTTGTTTTTAAGAGAAATTGTCTCAAGCGAGACAAAATTT
**
120733 GTTTTTAGA
66 GTTTCGAGA
* * * * *
120742 GAAAACTGTCTCAAGCGAGACAAAATTTGTTTTTAATA-AAATTGTCTCTAGCGAGACGACACTT
1 GAAAAATGTCTCAAGCGAGACAAAATTTGTTTTTAAGAGAAATTGTCTCAAGCGAGAC-AAAATT
120806 TGTTTCGAGA
65 TGTTTCGAGA
120816 GAAA
1 GAAA
120820 CAATCTCAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
73 17 0.26
74 49 0.74
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (74 bp):
GAAAAATGTCTCAAGCGAGACAAAATTTGTTTTTAAGAGAAATTGTCTCAAGCGAGACAAAATTT
GTTTCGAGA
Found at i:120810 original size:37 final size:36
Alignment explanation
Indices: 120668--120798 Score: 172
Period size: 37 Copynumber: 3.6 Consensus size: 36
120658 TGTCTCAAAG
* ** *
120668 GAAAAATGTCTCAAGCGAGATGAAATTTGTTTTTGA
1 GAAAATTGTCTCAAGCGAGACAAAATTTGTTTTTAA
*
120704 GAGAAATTGTCTCAAGTGAGACAAAATTTGTTTTTAGA
1 GA-AAATTGTCTCAAGCGAGACAAAATTTGTTTTTA-A
*
120742 GAAAACTGTCTCAAGCGAGACAAAATTTGTTTTTAA
1 GAAAATTGTCTCAAGCGAGACAAAATTTGTTTTTAA
* *
120778 TAAAATTGTCTCTAGCGAGAC
1 GAAAATTGTCTCAAGCGAGAC
120799 GACACTTTGT
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
36 21 0.25
37 59 0.71
38 3 0.04
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (36 bp):
GAAAATTGTCTCAAGCGAGACAAAATTTGTTTTTAA
Found at i:123460 original size:19 final size:20
Alignment explanation
Indices: 123436--123507 Score: 76
Period size: 19 Copynumber: 3.5 Consensus size: 20
123426 ATGCAAAAAT
123436 GGTATCGATACCATAGTA-G
1 GGTATCGATACCATAGTAGG
123455 GGTATC-AGTACCATAGTATGG
1 GGTATCGA-TACCATAGTA-GG
* * *
123476 TGGTATGGATACCTTGGTAGG
1 -GGTATCGATACCATAGTAGG
123497 GGTATCGATAC
1 GGTATCGATAC
123508 TGAGGAACCA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
18 1 0.02
19 16 0.36
20 10 0.23
21 3 0.07
22 13 0.30
23 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (20 bp):
GGTATCGATACCATAGTAGG
Found at i:123899 original size:54 final size:54
Alignment explanation
Indices: 123835--124277 Score: 615
Period size: 54 Copynumber: 8.2 Consensus size: 54
123825 CCAAATAGGG
* *
123835 ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCATTTCGTC
1 ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGAC
*
123889 ACTAAGTGTGCATTTCACGGAATTCAGCCTATGTGGATGAATAATCGTTTCGAC
1 ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGAC
* *
123943 ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGGC
1 ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGAC
* * *
123997 ATTAAGTGTGCATTTCACGAAATTCATCCTATGTGGATGAATAA-CAGTTTCGGC
1 ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATC-GTTTCGAC
** * *
124051 ACTAAGTGTGCATTTCGTGAAATTCATCCTATGTGGATGAATAACCGTTTCGAC
1 ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGAC
* * * **
124105 ACTAAGTGTGCATTTCACGAAATTCATCCTAGGTGGATGAATAATTGTTTCGGT
1 ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGAC
* * * * *
124159 ACTAATTGTGCATTTCACAGG-ATTTATCATATGTGGATGAATAATCGTTTTGGC
1 ACTAAGTGTGCATTTCAC-GGAATTCATCCTATGTGGATGAATAATCGTTTCGAC
*
124213 ACTAAGTGTGCATTTCAC-GAATTCATCCTATTTGGATGAATAA-CTGTTTCGAC
1 ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATC-GTTTCGAC
*
124266 ACTATGTGTGCA
1 ACTAAGTGTGCA
124278 AACCATGGAA
Statistics
Matches: 350, Mismatches: 34, Indels: 11
0.89 0.09 0.03
Matches are distributed among these distances:
52 2 0.01
53 38 0.11
54 308 0.88
55 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (54 bp):
ACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGAC
Found at i:130052 original size:34 final size:34
Alignment explanation
Indices: 130014--130081 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
130004 CAACTTTGGC
130014 ATTCTTCTATGCCAATAATGCACCCATATGCATT
1 ATTCTTCTATGCCAATAATGCACCCATATGCATT
* ** *
130048 ATTCTTTTATGCGGATAATGCACCCTTATGCATT
1 ATTCTTCTATGCCAATAATGCACCCATATGCATT
130082 TCAGCTAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (34 bp):
ATTCTTCTATGCCAATAATGCACCCATATGCATT
Found at i:130200 original size:45 final size:44
Alignment explanation
Indices: 130137--130285 Score: 165
Period size: 45 Copynumber: 3.6 Consensus size: 44
130127 TATTCTTTTT
*
130137 TGCCGATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCA
1 TGCCAATAATGCACCCATATGCATTT-AGCTAAGGCATCATTTCA
* * *
130182 TGCCAACAATGTACCCATATGCA-TTA--T------TC-TTTTA
1 TGCCAATAATGCACCCATATGCATTTAGCTAAGGCATCATTTCA
*
130216 TGCCGATAATGCACCCATATGCATTTTAGCTAAGGCATCATTTCA
1 TGCCAATAATGCACCCATATGCA-TTTAGCTAAGGCATCATTTCA
130261 TGCCAATAATGCACCCATATGCATT
1 TGCCAATAATGCACCCATATGCATT
130286 ATTCTTTTAT
Statistics
Matches: 84, Mismatches: 9, Indels: 23
0.72 0.08 0.20
Matches are distributed among these distances:
34 24 0.29
35 2 0.02
36 3 0.04
38 1 0.01
41 1 0.01
43 1 0.01
44 6 0.07
45 46 0.55
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.32
Consensus pattern (44 bp):
TGCCAATAATGCACCCATATGCATTTAGCTAAGGCATCATTTCA
Found at i:130232 original size:79 final size:79
Alignment explanation
Indices: 129982--130295 Score: 472
Period size: 79 Copynumber: 4.0 Consensus size: 79
129972 CTTTTATATT
* **
129982 GATAATGCACCCATATGCATTTCAACTTTGGCAT--TCTTCTATGCCAATAATGCACCCATATGC
1 GATAATGCACCCATATGCATTTCAGCTAAGGCATCAT-TTC-ATGCCAATAATGCACCCATATGC
*
130045 ATTATTCTTTTATGCG
64 ATTATTCTTTTATGCC
* * *
130061 GATAATGCACCCTTATGCATTTCAGCTAAGGCATCCTTTCATG-CAATTAAATGCACCCATATAC
1 GATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAA-T-AATGCACCCATATGC
*
130125 ATTATTCTTTTTTGCC
64 ATTATTCTTTTATGCC
* *
130141 GATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAACAATGTACCCATATGCAT
1 GATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAATAATGCACCCATATGCAT
130206 TATTCTTTTATGCC
66 TATTCTTTTATGCC
*
130220 GATAATGCACCCATATGCATTTTAGCTAAGGCATCATTTCATGCCAATAATGCACCCATATGCAT
1 GATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAATAATGCACCCATATGCAT
130285 TATTCTTTTAT
66 TATTCTTTTAT
130296 TCATTCGTTC
Statistics
Matches: 214, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
78 3 0.01
79 135 0.63
80 72 0.34
81 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (79 bp):
GATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAATAATGCACCCATATGCAT
TATTCTTTTATGCC
Found at i:130261 original size:159 final size:158
Alignment explanation
Indices: 129982--130293 Score: 477
Period size: 159 Copynumber: 2.0 Consensus size: 158
129972 CTTTTATATT
** *
129982 GATAATGCACCCATATGCATTTCAACTTTGGCATTCTTCTATGCCAATAATGCACCCATATGCAT
1 GATAATGCACCCATATGCATTTCAACTAAGGCATTCTTCTATGCCAACAATGCACCCATATGCAT
* * *
130047 TATTCTTTTATGCGGATAATGCACCCTTATGCATTTCAGCTAAGGCATCCTTTCATG-CAATTAA
66 TATTCTTTTATGCCGATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAA-T-A
130111 ATGCACCCATATACATTATTCTTTTTTGCC
129 ATGCACCCATATACATTATTCTTTTTTGCC
* *
130141 GATAATGCACCCATATGCATTTCAGCTAAGGCA-TCATT-TCATGCCAACAATGTACCCATATGC
1 GATAATGCACCCATATGCATTTCAACTAAGGCATTC-TTCT-ATGCCAACAATGCACCCATATGC
*
130204 ATTATTCTTTTATGCCGATAATGCACCCATATGCATTTTAGCTAAGGCATCATTTCATGCCAATA
64 ATTATTCTTTTATGCCGATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAATA
*
130269 ATGCACCCATATGCATTATTCTTTT
129 ATGCACCCATATACATTATTCTTTT
130294 ATTCATTCGT
Statistics
Matches: 140, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
158 28 0.20
159 109 0.78
160 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (158 bp):
GATAATGCACCCATATGCATTTCAACTAAGGCATTCTTCTATGCCAACAATGCACCCATATGCAT
TATTCTTTTATGCCGATAATGCACCCATATGCATTTCAGCTAAGGCATCATTTCATGCCAATAAT
GCACCCATATACATTATTCTTTTTTGCC
Found at i:132984 original size:25 final size:25
Alignment explanation
Indices: 132956--133038 Score: 60
Period size: 27 Copynumber: 3.2 Consensus size: 25
132946 AGGCACTAAG
132956 TGTGCATTTCACAGAATTCATCCTA
1 TGTGCATTTCACAGAATTCATCCTA
* * * * *
132981 TGTGGATGAATAACA-ATTTCAGCACTAA
1 TGTGCAT--TTCACAGAATTCATC-CT-A
*
133009 GTGTGCATTTCACGGAATTCATCCTA
1 -TGTGCATTTCACAGAATTCATCCTA
133035 TGTG
1 TGTG
133039 GATGAATAAT
Statistics
Matches: 41, Mismatches: 11, Indels: 12
0.64 0.17 0.19
Matches are distributed among these distances:
25 10 0.24
26 7 0.17
27 11 0.27
28 7 0.17
29 6 0.15
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (25 bp):
TGTGCATTTCACAGAATTCATCCTA
Found at i:133405 original size:54 final size:54
Alignment explanation
Indices: 132947--133393 Score: 651
Period size: 54 Copynumber: 8.3 Consensus size: 54
132937 TTACCAAATA
* **
132947 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACAATTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
133001 AGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * * *
133055 GGCACTAAGTGTGCATTTTACAGAATTCTTCCTAGGTGGATGAATAATCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
133109 GGCACTAAGTGTGCATTTCACGAAATTCATCCTATGTAGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * *
133163 GACACTAAGTGTACATTTCATGGAATTCATCCTATGTGGATGAATAACCGTTTT
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * *
133217 GGCACTAAGTGTGCATTTCACAGAATTTATGCTAGGTGGATGAATAACCGTTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* * * *
133271 GACACTAATTGTGCATTTCACGGGATTCATCCTATGTGGATGAATAACCATTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
* *
133325 GGCACTAAGTGTGCATTTCACGGAATTCATCTTATGTGGATGAATAACCATTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
*
133379 GGCACTATGTGTGCA
1 GGCACTAAGTGTGCA
133394 AACCACGGAA
Statistics
Matches: 349, Mismatches: 44, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 349 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (54 bp):
GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTC
Found at i:138099 original size:13 final size:13
Alignment explanation
Indices: 138081--138115 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
138071 TAAACCCCAA
138081 ATATTTTTCTTTT
1 ATATTTTTCTTTT
138094 ATATTTTTC-TTT
1 ATATTTTTCTTTT
*
138106 ATGTTTTTCT
1 ATATTTTTCT
138116 CTGTCCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.14, C:0.09, G:0.03, T:0.74
Consensus pattern (13 bp):
ATATTTTTCTTTT
Found at i:139852 original size:55 final size:55
Alignment explanation
Indices: 139782--140257 Score: 751
Period size: 55 Copynumber: 8.6 Consensus size: 55
139772 AAGTGTGCAA
*
139782 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCCGTATGGGCACTATATGTGT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTATATGTGT
139837 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTATATATGTGT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCAC--TATATGTGT
* * *
139894 TAACTTAAGAAATTCATACTAAGTGGATGAATTTCCT-TATGGGAAATATATGTGT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTT-CTGTATGGGCACTATATGTGT
* * *
139949 AAACTTAAGAAATTCATATTAAGTGGAAGAATTTCCGTATGGGCACTATATGTGT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTATATGTGT
*
140004 AAACTTAAGAAATTCATACTAAATGGATGAATTTCTGTATGGGCACT-TGATGTGT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTAT-ATGTGT
*
140059 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTTTATGTGT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTATATGTGT
*
140114 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTTTATGTGT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTATATGTGT
* *
140169 AAACTTAATAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTATATGTGCA
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTATATGTG-T
* * *
140225 AAAC-TAGGAAATTCATACTAAGTGTATAAATTT
1 AAACTTAAGAAATTCATACTAAGTGGATGAATTT
140258 TCTTATTGAT
Statistics
Matches: 392, Mismatches: 22, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
54 2 0.01
55 334 0.85
56 5 0.01
57 49 0.12
58 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (55 bp):
AAACTTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACTATATGTGT
Found at i:162117 original size:26 final size:26
Alignment explanation
Indices: 162087--162144 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
162077 AGTTTAGTAG
162087 TAAAACTGATACCCTACCATTTTACC
1 TAAAACTGATACCCTACCATTTTACC
162113 TAAAACTGATACCCTACCATTTTACC
1 TAAAACTGATACCCTACCATTTTACC
162139 TAAAAC
1 TAAAAC
162145 AATGTCATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.38, C:0.29, G:0.03, T:0.29
Consensus pattern (26 bp):
TAAAACTGATACCCTACCATTTTACC
Found at i:174171 original size:16 final size:16
Alignment explanation
Indices: 174137--174182 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
174127 TGAATGATGT
174137 AAATGATAAA-AAAATA
1 AAATGA-AAAGAAAATA
174153 AAAT-AAAAGAAAATAA
1 AAATGAAAAGAAAAT-A
*
174169 AAATGAAAGGAAAA
1 AAATGAAAAGAAAA
174183 AAGTTAGTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 3 0.12
15 6 0.23
16 9 0.35
17 8 0.31
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (16 bp):
AAATGAAAAGAAAATA
Found at i:176686 original size:41 final size:41
Alignment explanation
Indices: 176546--176796 Score: 349
Period size: 41 Copynumber: 6.2 Consensus size: 41
176536 TTCTTAAAAC
*
176546 TATATATTATATATATTTCAAAAATGTTTT-AAAACTATATAT
1 TATATA-TGTATATATTT-AAAAATGTTTTCAAAACTATATAT
*
176588 TATATA--TAT-T-TTCGAAAAATGTTTTCAAAACTATATAT
1 TATATATGTATATATT-TAAAAATGTTTTCAAAACTATATAT
176626 TATATA--TAT-T-TTGTCAAAAATGTTTTCAAAACTATATAT
1 TATATATGTATATATT-T-AAAAATGTTTTCAAAACTATATAT
176665 TATATATGTATATATTTAAAAATGTTTTCAAAACTATATAT
1 TATATATGTATATATTTAAAAATGTTTTCAAAACTATATAT
* *
176706 TATATATGTATATATTCAAAAATATTTTCAAAACTATATAT
1 TATATATGTATATATTTAAAAATGTTTTCAAAACTATATAT
*
176747 TATATATGTATATATTCAAAAATGTTTTCAAAACTATATAT
1 TATATATGTATATATTTAAAAATGTTTTCAAAACTATATAT
176788 TATATATGT
1 TATATATGT
176797 TATGTATATA
Statistics
Matches: 196, Mismatches: 6, Indels: 15
0.90 0.03 0.07
Matches are distributed among these distances:
37 13 0.07
38 25 0.13
39 33 0.17
41 115 0.59
42 8 0.04
43 2 0.01
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.46
Consensus pattern (41 bp):
TATATATGTATATATTTAAAAATGTTTTCAAAACTATATAT
Found at i:176796 original size:82 final size:79
Alignment explanation
Indices: 176541--176794 Score: 387
Period size: 82 Copynumber: 3.2 Consensus size: 79
176531 TCATTTTCTT
176541 AAAACTATATA-T-TATATATATTTCAAAAATGTTTT-AAAACTATATATTATATA--TAT-T-T
1 AAAACTATATATTATATATATATTTCAAAAATGTTTTCAAAACTATATATTATATATGTATATAT
176599 TCGAAAAATGTTTTC
66 TC-AAAAATGTTTTC
*
176614 AAAACTATATATTATATATATTTTGTCAAAAATGTTTTCAAAACTATATATTATATATGTATATA
1 AAAACTATATATTATATATATATT-TCAAAAATGTTTTCAAAACTATATATTATATATGTATATA
*
176679 TTTAAAAATGTTTTC
65 TTCAAAAATGTTTTC
*
176694 AAAACTATATATTATATATGTATATATTCAAAAATATTTTCAAAACTATATATTATATATGTATA
1 AAAACTATATATTATATA--TATAT-TTCAAAAATGTTTTCAAAACTATATATTATATATGTATA
176759 TATTCAAAAATGTTTTC
63 TATTCAAAAATGTTTTC
176776 AAAACTATATATTATATAT
1 AAAACTATATATTATATAT
176795 GTTATGTATA
Statistics
Matches: 165, Mismatches: 5, Indels: 15
0.89 0.03 0.08
Matches are distributed among these distances:
73 11 0.07
74 1 0.01
75 9 0.05
76 13 0.08
77 18 0.11
79 3 0.02
80 32 0.19
81 2 0.01
82 75 0.45
83 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (79 bp):
AAAACTATATATTATATATATATTTCAAAAATGTTTTCAAAACTATATATTATATATGTATATAT
TCAAAAATGTTTTC
Found at i:178192 original size:16 final size:19
Alignment explanation
Indices: 178155--178191 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
178145 ATTGAACACG
178155 TATTATTTTTTTAAAATAA
1 TATTATTTTTTTAAAATAA
*
178174 TATTATTTTTTAAAAATA
1 TATTATTTTTTTAAAATA
178192 TAACACATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTATTTTTTTAAAATAA
Found at i:180269 original size:15 final size:15
Alignment explanation
Indices: 180244--180290 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
180234 AATATCTCTA
*
180244 TTCTATGTTCTATCT
1 TTCTTTGTTCTATCT
*
180259 TTTTTTGTTCTACTCT
1 TTCTTTGTTCTA-TCT
180275 TTCTTTGTT-TATCT
1 TTCTTTGTTCTATCT
180289 TT
1 TT
180291 GGATCTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 5 0.18
15 12 0.43
16 11 0.39
ACGTcount: A:0.09, C:0.17, G:0.06, T:0.68
Consensus pattern (15 bp):
TTCTTTGTTCTATCT
Found at i:180281 original size:16 final size:16
Alignment explanation
Indices: 180239--180283 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
180229 GTTTGAATAT
*
180239 CTCTATTCTATGTTCTA
1 CTCT-TTCTTTGTTCTA
*
180256 -TCTTTTTTTGTTCTA
1 CTCTTTCTTTGTTCTA
180271 CTCTTTCTTTGTT
1 CTCTTTCTTTGTT
180284 TATCTTTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.09, C:0.20, G:0.07, T:0.64
Consensus pattern (16 bp):
CTCTTTCTTTGTTCTA
Found at i:180815 original size:21 final size:21
Alignment explanation
Indices: 180788--180840 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
180778 AAAAGAACAA
* *
180788 AATAATAATAATATTAGT-TT
1 AATAATAATAATAATAATGTT
180808 ATATAATAATAATAATAATGTT
1 A-ATAATAATAATAATAATGTT
180830 AATAATAATAA
1 AATAATAATAA
180841 CTAAAAATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 1 0.03
21 25 0.86
22 3 0.10
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (21 bp):
AATAATAATAATAATAATGTT
Found at i:181296 original size:90 final size:89
Alignment explanation
Indices: 181135--181297 Score: 222
Period size: 90 Copynumber: 1.8 Consensus size: 89
181125 TTGGTGTTGA
** *
181135 AGACGACAATGCTCATCCACATTGAAGAGATCTGCTGCTTTTGGGTGATGACACTATTCCTTCTT
1 AGACGACAATGCTCATCCACATTGAAGAGATCTGCTGCTTCAGGGTGATGACACTATTCCTTCTC
181200 TATGAGGAAATCGAGTCAATCTAG
66 TATGAGGAAATCGAGTCAATCTAG
* * *
181224 AGACGACACA-GCTCATCCGCTTTGAAGAGATTTGGTCT-CTTCAGGGTGATGACACTATTCCTT
1 AGACGACA-ATGCTCATCCACATTGAAGAGATCT-G-CTGCTTCAGGGTGATGACACTATTCCTT
*
181287 CTCTCTGAGGA
63 CTCTATGAGGA
181298 CGTCGGGTCG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
89 28 0.44
90 34 0.53
91 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (89 bp):
AGACGACAATGCTCATCCACATTGAAGAGATCTGCTGCTTCAGGGTGATGACACTATTCCTTCTC
TATGAGGAAATCGAGTCAATCTAG
Found at i:181351 original size:55 final size:54
Alignment explanation
Indices: 181284--181535 Score: 305
Period size: 55 Copynumber: 4.6 Consensus size: 54
181274 GACACTATTC
** * *
181284 CTTCTCTCTGAGGACGTCGGGTCGATCTGAAGATAATTTGATGTTGACATTGTT
1 CTTCTCTCTGAGGAAATCGGGTCAATCTGAAGATAATTTGGTGTTGACATTGTT
*
181338 CATTCTCTTTGAGGAAATC-GGTCAATCTGAAGATAATTTGGTGTTGAGTCAGTT-TT
1 C-TTCTCTCTGAGGAAATCGGGTCAATCTGAAGATAATTTGGTGTTGA--CA-TTGTT
* * *
181394 -TTCTCTCTGAGCAAATTGGGTCAATCTGGAGATAATTTGGTGTTGACATTGTT
1 CTTCTCTCTGAGGAAATCGGGTCAATCTGAAGATAATTTGGTGTTGACATTGTT
* * *
181447 CCTTCTCTCTGAAGAAATCGGGTCAATCT-ATAGATAATTTGGTGTTAACACTGTT
1 -CTTCTCTCTGAGGAAATCGGGTCAATCTGA-AGATAATTTGGTGTTGACATTGTT
*
181502 CTTTCTCTCTGAGGAAATCGGGTCAATCTAAAGA
1 C-TTCTCTCTGAGGAAATCGGGTCAATCTGAAGA
181536 CGACACTGCT
Statistics
Matches: 171, Mismatches: 16, Indels: 21
0.82 0.08 0.10
Matches are distributed among these distances:
52 2 0.01
53 4 0.02
54 42 0.25
55 116 0.68
56 5 0.03
57 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.37
Consensus pattern (54 bp):
CTTCTCTCTGAGGAAATCGGGTCAATCTGAAGATAATTTGGTGTTGACATTGTT
Found at i:181666 original size:90 final size:90
Alignment explanation
Indices: 181494--181669 Score: 221
Period size: 90 Copynumber: 2.0 Consensus size: 90
181484 TTTGGTGTTA
* * * *
181494 ACACTGTTCTTTCTCTCTGAGGAAATCGGGTCAATCTAAAGACGACACTGCTCGTCCGTATTGAA
1 ACACTATTCATTCTCTCTGAGGAAATCGGGTCAATCTAAAGACGACACTGCTCATCCGTATTAAA
* * *
181559 TAGATCTGGCCATTTTCGGGTGATG
66 GAGATCTGACCACTTTCGGGTGATG
* * *
181584 ACACTATTCATTCTCTTTGAGGAAATCGGGTCAATCTGGAA-ATGACACTGCTCATCCGCT-TTA
1 ACACTATTCATTCTCTCTGAGGAAATCGGGTCAATCT-AAAGACGACACTGCTCATCCG-TATTA
*
181647 AAGAGATCTGACCGCTTTCGGGT
64 AAGAGATCTGACCACTTTCGGGT
181670 AAATCGAAGA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
90 70 0.96
91 3 0.04
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (90 bp):
ACACTATTCATTCTCTCTGAGGAAATCGGGTCAATCTAAAGACGACACTGCTCATCCGTATTAAA
GAGATCTGACCACTTTCGGGTGATG
Found at i:181916 original size:124 final size:122
Alignment explanation
Indices: 181760--182374 Score: 513
Period size: 123 Copynumber: 5.0 Consensus size: 122
181750 GGTTGCTTTC
* ** * * * * *
181760 GGGTGATTCACTCTTTTTGATGAAGGATGTTGAATTTGGTGACAATCTCACTCTTTCCTCTGAAA
1 GGGTGATACACT-TTTTTTCTGAAGGACGTTGAATCTGGTGACGATATCACTCTTTCCTCTAAAA
* * *
181825 GACGTTGAATCATGGGATGATCTTACTCCTTCCTCTGAAGGATGTTAAGTCGTAATT-
65 GACGTTGAGTCGTGGGACGATCTTACTCCTTCCTCTGAAGGATGTTAAGTCGTAATTA
* * * *
181882 GGAGTAATATATTCTTTTTTTCTGAAGGACGTTGAAT-TAGGTGACGATATCACTCTTTTCTCTG
1 GG-GTGATACA--CTTTTTTTCTGAAGGACGTTGAATCT-GGTGACGATATCACTCTTTCCTCTA
* * * *
181946 AAAGACGCTGAGTCGTGGGACGATCTCACTCCTTCTTATGAAGGATGTTAAGTCGTAATTTA
62 AAAGACGTTGAGTCGTGGGACGATCTTACTCCTTCCTCTGAAGGATGTTAAGTCGTAA-TTA
* * * *** * *
182008 GGGTGATCCACTCTTTTTATGAAGGACGCAAAATCTAGTGACGATATCGCTCTTTCCTCTAAAAG
1 GGGTGATACACTTTTTTTCTGAAGGACGTTGAATCTGGTGACGATATCACTCTTTCCTCTAAAAG
* * * *
182073 ATGTTGAGTCGTGGGATGATCTTACTCCTTCATCTGAAGGATGCTAAGTCGTAATTCA
66 ACGTTGAGTCGTGGGACGATCTTACTCCTTCCTCTGAAGGATGTTAAGTCGTAATT-A
* * * * *
182131 GGCTGATACACTTCTTTTTCTGAAAGATGTTGAATCTGGTTACG-TCTCACTCTTTCCTCTAAAA
1 GGGTGATACACTT-TTTTTCTGAAGGACGTTGAATCTGGTGACGATATCACTCTTTCCTCTAAAA
* * * * * * * * * *
182195 GATGATGAGTTGTGGGACAATCTTACTCCTTCCTTTGAATGACGTTAGGTCATAATTCG
65 GACGTTGAGTCGTGGGACGATCTTACTCCTTCCTCTGAAGGATGTTAAGTCGTAATT-A
* * ** * * * * * *
182254 GGGTGGTCCAC-TACTTT-TGAAGGATGTTGAATCTGGTGGCAATCTCATTCTTTCCTCTGAAAG
1 GGGTGATACACTTTTTTTCTGAAGGACGTTGAATCTGGTGACGATATCACTCTTTCCTCTAAAAG
* * * * * * * * *
182317 ATGCTAAGTCGTGGAACGACCTTACTTCTTCGTCTGAAGG-TCGCTAAGTCATAATTA
66 ACGTTGAGTCGTGGGACGATCTTACTCCTTCCTCTGAAGGAT-GTTAAGTCGTAATTA
182374 G
1 G
182375 ATGATCCTAA
Statistics
Matches: 397, Mismatches: 85, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
120 21 0.05
121 64 0.16
122 5 0.01
123 181 0.46
124 115 0.29
125 9 0.02
126 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (122 bp):
GGGTGATACACTTTTTTTCTGAAGGACGTTGAATCTGGTGACGATATCACTCTTTCCTCTAAAAG
ACGTTGAGTCGTGGGACGATCTTACTCCTTCCTCTGAAGGATGTTAAGTCGTAATTA
Found at i:183802 original size:17 final size:17
Alignment explanation
Indices: 183780--183820 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
183770 TGTGAGAGAT
183780 ATTTGCTAGTTTCTAAA
1 ATTTGCTAGTTTCTAAA
183797 ATTTGCTAGTTTCTAAA
1 ATTTGCTAGTTTCTAAA
183814 ATTTGCT
1 ATTTGCT
183821 TCGCAGAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49
Consensus pattern (17 bp):
ATTTGCTAGTTTCTAAA
Found at i:190334 original size:20 final size:20
Alignment explanation
Indices: 190296--190335 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
190286 CTTTATGTTC
* *
190296 TCTACTCTCTCTTTTTTCGT
1 TCTACTCTCTCTCTGTTCGT
*
190316 TCTACTCTTTCTCTGTTCGT
1 TCTACTCTCTCTCTGTTCGT
190336 CTTCGGATCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.05, C:0.30, G:0.07, T:0.57
Consensus pattern (20 bp):
TCTACTCTCTCTCTGTTCGT
Found at i:191512 original size:10 final size:11
Alignment explanation
Indices: 191479--191509 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
191469 CTCATTTTCA
191479 GAGAAATTTTT
1 GAGAAATTTTT
191490 GA-AAATTTTT
1 GAGAAATTTTT
191500 GAGAAATTTT
1 GAGAAATTTT
191510 GAGTTTGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (11 bp):
GAGAAATTTTT
Found at i:192053 original size:116 final size:116
Alignment explanation
Indices: 191848--192078 Score: 383
Period size: 116 Copynumber: 2.0 Consensus size: 116
191838 GGGACTTGGA
* * *
191848 AAAGTGGTGAAAGCGCGTTCCTGGGGGCGCGCCTTCCATTATTTTGTCAGATAATATGTTATCAT
1 AAAGTGGTGAAAGCACGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCAT
* * *
191913 TACCCTATTATGTCACTCATGTCCCTCGAGGGCACTATTCATGTCAGTACCC
66 TACCCTATTATGTCACTCATGTCCCCCG-GAGAACTATTCATGTCAGTACCC
191965 AAAGTGGTGAAAGCACGTTCCCGGGGG-GCGCCTTCCATTATTTTGTCAGAGAATATGTTATCAT
1 AAAGTGGTGAAAGCACGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCAT
*
192029 TGCCCTATTATGTCACTCATGTCCCCCGGAGAACTATTCATGTCAGTACC
66 TACCCTATTATGTCACTCATGTCCCCCGGAGAACTATTCATGTCAGTACC
192079 TATTATTTCT
Statistics
Matches: 107, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
115 20 0.19
116 62 0.58
117 25 0.23
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.31
Consensus pattern (116 bp):
AAAGTGGTGAAAGCACGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCAT
TACCCTATTATGTCACTCATGTCCCCCGGAGAACTATTCATGTCAGTACCC
Found at i:192112 original size:254 final size:248
Alignment explanation
Indices: 191613--192215 Score: 899
Period size: 254 Copynumber: 2.4 Consensus size: 248
191603 ACGTGAAGGT
* *
191613 GCGTTCCTAGGGG-GCTCCTTCCATTATTTTGTCAGATAATATGTTATCATTGTCTTATTATGTC
1 GCGTTCCT-GGGGCGCGCCTTCCATTATTTTGTCAGATAATATGTTATCATTGTCCTATTATGTC
* ** *
191677 ACTCATGTCCCTCGGGGGCACTATTCATATCAGTACCCAAAGTGGTGAAAGTGCGTTCCTGGAGG
65 ACTCATGTCCCTC-GGGGCACTATTCATGTCAGTACCCAAAGTGGTGAAAGCACGTTCCCGGAGG
* *
191742 GGCGCCTTCCATTGTGAAAGAATATGTTATCATTGCCATATTATGTCACTCGTGTCCCCCGGAGA
129 GGCGCCTTCCATTGTCAAAGAATATGTTATCATTGCCATATTATGTCACTCATGTCCCCCGGAGA
*
191807 ACTATTCATATCAGTACCTATTATTTCTTAGGGGACTTGGAAAAGTGGTGAAAGC
194 ACTATTCATATCAGTACCTATTATTTCTGAGGGGACTTGGAAAAGTGGTGAAAGC
**
191862 GCGTTCCTGGGGGCGCGCCTTCCATTATTTTGTCAGATAATATGTTATCATTACCCTATTATGTC
1 GCGTTCCT-GGGGCGCGCCTTCCATTATTTTGTCAGATAATATGTTATCATTGTCCTATTATGTC
191927 ACTCATGTCCCTCGAGGGCACTATTCATGTCAGTACCCAAAGTGGTGAAAGCACGTTCCCGG-GG
65 ACTCATGTCCCTCG-GGGCACTATTCATGTCAGTACCCAAAGTGGTGAAAGCACGTTCCCGGAGG
* *
191991 GGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCCC
129 GGCGCCTTCC---A--TTGTCAAAGAATATGTTATCATTGCCATATTATGTCACTCATGTCCCCC
*
192056 GGAGAACTATTCATGTCAGTACCTATTATTTCTGAGGGGACTT-GACAAAGTGGTGAAAGC
189 GGAGAACTATTCATATCAGTACCTATTATTTCTGAGGGGACTTGGA-AAAGTGGTGAAAGC
* * *
192116 GCGTTACC-GGGGCGCGCCTTCCATTATTTTGTCAGAAAATATATTATCATTGTCCTTTTATGTC
1 GCGTT-CCTGGGGCGCGCCTTCCATTATTTTGTCAGATAATATGTTATCATTGTCCTATTATGTC
* * *
192180 ACTCATGTCCCCCGGAGAACTATTCATGTCAGTACC
65 ACTCATGTCCCTCGGGGCACTATTCATGTCAGTACC
192216 TATTATTTCT
Statistics
Matches: 322, Mismatches: 23, Indels: 15
0.89 0.06 0.04
Matches are distributed among these distances:
249 25 0.08
250 103 0.32
252 21 0.07
253 66 0.20
254 105 0.33
255 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.33
Consensus pattern (248 bp):
GCGTTCCTGGGGCGCGCCTTCCATTATTTTGTCAGATAATATGTTATCATTGTCCTATTATGTCA
CTCATGTCCCTCGGGGCACTATTCATGTCAGTACCCAAAGTGGTGAAAGCACGTTCCCGGAGGGG
CGCCTTCCATTGTCAAAGAATATGTTATCATTGCCATATTATGTCACTCATGTCCCCCGGAGAAC
TATTCATATCAGTACCTATTATTTCTGAGGGGACTTGGAAAAGTGGTGAAAGC
Found at i:192177 original size:137 final size:136
Alignment explanation
Indices: 191964--192340 Score: 574
Period size: 137 Copynumber: 2.7 Consensus size: 136
191954 TGTCAGTACC
*
191964 CAAAGTGGTGAAAGCACGTTCCCGGGGGGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCAT
1 CAAAGTGGTGAAAGCGCGTTCCC-GGGGGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCAT
*
192029 TGCCCTATTATGTCACTCATGTCCCCCGGAGAACTATTCATGTCAGTACCTATTATTTCTGAGGG
65 TGCCCTATTATGTCACTCATGTCCCCCGGAGAACTATTCATGTCAGTACCTATTATTTCTGAGAG
192094 GACTTGA
130 GACTTGA
* * *
192101 CAAAGTGGTGAAAGCGCGTTACCGGGGCGCGCCTTCCATTATTTTGTCAGAAAATATATTATCAT
1 CAAAGTGGTGAAAGCGCGTTCCCGGGG-GCGCCTTCCATTATTTTGTCAGAGAATATGTTATCAT
* *
192166 TGTCCTTTTATGTCACTCATGTCCCCCGGAGAACTATTCATGTCAGTACCTATTATTTCTGAGAG
65 TGCCCTATTATGTCACTCATGTCCCCCGGAGAACTATTCATGTCAGTACCTATTATTTCTGAGAG
* *
192231 GATTTGG
130 GACTTGA
* * * * * *
192238 CAAAGTGGTGAAAGTGCGTTCCCAGGGAGGAGTCTTTCATTATTTTGTCCGAGAATATGTTATTA
1 CAAAGTGGTGAAAGCGCGTTCCC-GGG-GGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCA
*
192303 TTGCCCTATTATGTCACTCATGTCCCCCGGTGAACTAT
64 TTGCCCTATTATGTCACTCATGTCCCCCGGAGAACTAT
192341 AGATGGATGG
Statistics
Matches: 216, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
136 4 0.02
137 144 0.67
138 67 0.31
139 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (136 bp):
CAAAGTGGTGAAAGCGCGTTCCCGGGGGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATT
GCCCTATTATGTCACTCATGTCCCCCGGAGAACTATTCATGTCAGTACCTATTATTTCTGAGAGG
ACTTGA
Found at i:192538 original size:63 final size:63
Alignment explanation
Indices: 192470--192597 Score: 204
Period size: 63 Copynumber: 2.0 Consensus size: 63
192460 GTTATGTGAA
*
192470 GTTTGAATAAATTGGATAAAATGTTGTGAATAAATTAAATAAATGTGAAGTGATCAA-TTGGTT
1 GTTTGAATAAATTGGATAAAATGTTATGAATAAATTAAATAAATGTGAAGTGAT-AAGTTGGTT
* * *
192533 GTTTGAATATATTGGATAAAATGTTATGGATAAATTGAATAAATGTGAAGTGATAAGTTGGTT
1 GTTTGAATAAATTGGATAAAATGTTATGAATAAATTAAATAAATGTGAAGTGATAAGTTGGTT
192596 GT
1 GT
192598 GACATTGAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
62 2 0.03
63 58 0.97
ACGTcount: A:0.39, C:0.01, G:0.23, T:0.38
Consensus pattern (63 bp):
GTTTGAATAAATTGGATAAAATGTTATGAATAAATTAAATAAATGTGAAGTGATAAGTTGGTT
Found at i:192683 original size:14 final size:14
Alignment explanation
Indices: 192664--192693 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
192654 GGTAAGTTGA
192664 TTTTAATATATATG
1 TTTTAATATATATG
*
192678 TTTTAATGTATATG
1 TTTTAATATATATG
192692 TT
1 TT
192694 AAGGATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (14 bp):
TTTTAATATATATG
Found at i:192840 original size:34 final size:34
Alignment explanation
Indices: 192801--192873 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
192791 TTAAGTTGAG
192801 TTTAATGTTAAATTTTGAATACCATAATTTGTAT
1 TTTAATGTTAAATTTTGAATACCATAATTTGTAT
* *
192835 TTTAATTTTAAATTTTGAATACTATAATTTGTAT
1 TTTAATGTTAAATTTTGAATACCATAATTTGTAT
*
192869 ATTAA
1 TTTAA
192874 AAACATTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (34 bp):
TTTAATGTTAAATTTTGAATACCATAATTTGTAT
Found at i:194966 original size:24 final size:24
Alignment explanation
Indices: 194933--194989 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
194923 TAAATTCATT
194933 ATAAAT-TTAA-ATTAAAAATAATA
1 ATAAATATTAACATTAAAAATAA-A
**
194956 ATAAATATTAACATTAATTATAAA
1 ATAAATATTAACATTAAAAATAAA
*
194980 AAAAATATTA
1 ATAAATATTA
194990 TCATATCACT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.21
24 14 0.48
25 9 0.31
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
ATAAATATTAACATTAAAAATAAA
Found at i:204395 original size:21 final size:18
Alignment explanation
Indices: 204370--204408 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 18
204360 CTTTTTTCAA
204370 ATAATCATATATAAAATAAAT
1 ATAAT-ATAT-TAAAA-AAAT
204391 ATAATATATTAAAAAAAT
1 ATAATATATTAAAAAAAT
204409 TACCTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
20 4 0.22
21 5 0.28
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
ATAATATATTAAAAAAAT
Found at i:204464 original size:24 final size:24
Alignment explanation
Indices: 204432--204481 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
204422 AAGATTGAAC
**
204432 GAACTGGTGAAGGAAATATAGGAG
1 GAACTGGTGAAACAAATATAGGAG
204456 GAACTGGTGAAACAAATATAGGAG
1 GAACTGGTGAAACAAATATAGGAG
204480 GA
1 GA
204482 GTTGATGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.44, C:0.06, G:0.34, T:0.16
Consensus pattern (24 bp):
GAACTGGTGAAACAAATATAGGAG
Found at i:204918 original size:20 final size:20
Alignment explanation
Indices: 204866--204919 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
204856 AACTTAATAT
*
204866 TATTATTTTTAAAATATTAAAA
1 TATTATTTTT--ATTATTAAAA
*
204888 TAATT-TATTTATTATTAAAA
1 T-ATTATTTTTATTATTAAAA
204908 TATTATTTTTAT
1 TATTATTTTTAT
204920 AATTTTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
19 3 0.11
20 16 0.59
22 5 0.19
23 3 0.11
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TATTATTTTTATTATTAAAA
Found at i:204959 original size:31 final size:29
Alignment explanation
Indices: 204895--204974 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 29
204885 AAATAATTTA
*
204895 TTTATTATTAAAATATT-ATTTTTATAAT
1 TTTATTATAAAAATATTAATTTTTATAAT
204923 TTTATTACTAAAAATATTAATATTTGTAT-AT
1 TTTATTA-TAAAAATATTAAT-TTT-TATAAT
204954 TTTATTGAAATAAAAATATTA
1 TTTATT---ATAAAAATATTA
204975 TAAATTATGT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
28 7 0.16
29 9 0.20
30 2 0.05
31 11 0.25
32 3 0.07
33 11 0.25
34 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.53
Consensus pattern (29 bp):
TTTATTATAAAAATATTAATTTTTATAAT
Found at i:205122 original size:19 final size:19
Alignment explanation
Indices: 205054--205134 Score: 64
Period size: 19 Copynumber: 4.3 Consensus size: 19
205044 TTAAATATCT
205054 TTATTAA-AATATTATTAGA
1 TTATTAATAATATTATTA-A
205073 TTATTATATTAATATTA--AA
1 TTATTA-A-TAATATTATTAA
* *
205092 TATATAAATAATATTATTCA
1 T-TATTAATAATATTATTAA
*
205112 TTATTAATAAT-TTAATAA
1 TTATTAATAATATTATTAA
205130 -TATTA
1 TTATTA
205135 TTTCTATGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
17 5 0.10
18 13 0.25
19 18 0.35
20 8 0.16
22 7 0.14
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (19 bp):
TTATTAATAATATTATTAA
Found at i:205294 original size:21 final size:22
Alignment explanation
Indices: 205247--205311 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
205237 TTTTATTATA
205247 ATATTAAAAATA-TAATATAAT
1 ATATTAAAAATATTAATATAAT
*
205268 ATTATTAGAAATATTAATA-AAT
1 A-TATTAAAAATATTAATATAAT
**
205290 ATATTTTAAATATTTAA-ATAAT
1 ATATTAAAAATA-TTAATATAAT
205312 TAATGTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 11 0.30
22 21 0.57
23 5 0.14
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
ATATTAAAAATATTAATATAAT
Found at i:207705 original size:24 final size:24
Alignment explanation
Indices: 207678--207726 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
207668 TTATATTGTA
*
207678 TTTTAAAAATATTAATTAATATAT
1 TTTTAAAAATATTAATTAAAATAT
* *
207702 TTTTAAATATATTTATTAAAATAT
1 TTTTAAAAATATTAATTAAAATAT
207726 T
1 T
207727 ATATTATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TTTTAAAAATATTAATTAAAATAT
Found at i:207710 original size:12 final size:13
Alignment explanation
Indices: 207680--207732 Score: 58
Period size: 12 Copynumber: 4.2 Consensus size: 13
207670 ATATTGTATT
* *
207680 TTAAAAATATTAA
1 TTAAATATATTTA
207693 TT-AATATATTT-
1 TTAAATATATTTA
207704 TTAAATATATTTA
1 TTAAATATATTTA
207717 TTAAA-ATATTATA
1 TTAAATATATT-TA
207730 TTA
1 TTA
207733 TTAATATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 2 0.06
12 21 0.60
13 12 0.34
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
TTAAATATATTTA
Found at i:207733 original size:16 final size:15
Alignment explanation
Indices: 207696--207736 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
207686 ATATTAATTA
*
207696 ATATATT-TTTAAAT
1 ATATATTATTAAAAT
207710 ATAT-TTATTAAAAT
1 ATATATTATTAAAAT
207724 ATTATATTATTAA
1 A-TATATTATTAA
207737 TATTAAATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 2 0.09
14 11 0.48
15 3 0.13
16 7 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATATTATTAAAAT
Found at i:208625 original size:3 final size:3
Alignment explanation
Indices: 208619--208695 Score: 99
Period size: 3 Copynumber: 26.7 Consensus size: 3
208609 TAAATAATAA
* *
208619 TAT TAT TA- TAT TAT TAT TAA TAT TAT T-T TAT T-T TAC TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
208663 TAT TAT TAT TAT TAT TATT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA
208696 CAGACCCAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
2 8 0.12
3 54 0.83
4 3 0.05
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:208631 original size:23 final size:22
Alignment explanation
Indices: 208599--208649 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
208589 ATACATTTGT
*
208599 TTTTTTATTATAAATAATAATA
1 TTTTATATTATAAATAATAATA
* * *
208621 TTATTATATTATTATTAATATTA
1 TT-TTATATTATAAATAATAATA
208644 TTTTAT
1 TTTTAT
208650 TTTACTATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTTATATTATAAATAATAATA
Found at i:210001 original size:18 final size:17
Alignment explanation
Indices: 209960--210001 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
209950 TAGTTTTAAT
209960 TTTATTTATTTTAGTTG
1 TTTATTTATTTTAGTTG
*
209977 TTGATTTAATTTTA-TATG
1 TTTATTT-ATTTTAGT-TG
209995 TTTATTT
1 TTTATTT
210002 GTAATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (17 bp):
TTTATTTATTTTAGTTG
Found at i:210016 original size:3 final size:3
Alignment explanation
Indices: 210008--210039 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
209998 ATTTGTAATA
210008 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
210040 CATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:210751 original size:28 final size:27
Alignment explanation
Indices: 210719--210772 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
210709 TAATTATTTC
*
210719 TTTTCAAAATTTTTATATATACTTATTA
1 TTTTCAAAATATTTATATATA-TTATTA
* *
210747 TTTTCATAGTATTTATATATATTATT
1 TTTTCAAAATATTTATATATATTATT
210773 TTATTAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (27 bp):
TTTTCAAAATATTTATATATATTATTA
Found at i:210793 original size:24 final size:24
Alignment explanation
Indices: 210736--210817 Score: 59
Period size: 24 Copynumber: 3.6 Consensus size: 24
210726 AATTTTTATA
* *
210736 TATACTTATTATTTTCATAGTATT
1 TATATTTATTATTTTCATAATATT
*
210760 TATATATATTATTTT-ATTAATATT
1 TATATTTATTATTTTCA-TAATATT
* *
210784 T-CA-TT-TTATTTTCA-AGTATT
1 TATATTTATTATTTTCATAATATT
210804 T-TATTTCATTATTT
1 TATATTT-ATTATTT
210818 ATTTTTCTGT
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
20 7 0.15
21 9 0.20
22 2 0.04
23 8 0.17
24 20 0.43
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (24 bp):
TATATTTATTATTTTCATAATATT
Found at i:211411 original size:25 final size:24
Alignment explanation
Indices: 211361--211408 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
211351 TAGGTAGACA
* *
211361 TTATTATTAAATTAATTTTTTCCT
1 TTATTATTAAACTAATTATTTCCT
211385 TTATTATGTAAACTAATTCATTTC
1 TTATTAT-TAAACTAATT-ATTTC
211409 TTTTTGTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 9 0.45
26 4 0.20
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.56
Consensus pattern (24 bp):
TTATTATTAAACTAATTATTTCCT
Found at i:212441 original size:22 final size:25
Alignment explanation
Indices: 212395--212447 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 25
212385 TATAATTATG
212395 AGAAA-AAATAATTTATATATATTT
1 AGAAATAAATAATTTATATATATTT
*
212419 ATAAATAAAT-ATTTAT-T-TATTT
1 AGAAATAAATAATTTATATATATTT
212441 AGAAATA
1 AGAAATA
212448 TCAGAAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 11 0.42
23 1 0.04
24 10 0.38
25 4 0.15
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (25 bp):
AGAAATAAATAATTTATATATATTT
Found at i:213616 original size:23 final size:22
Alignment explanation
Indices: 213590--213645 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 22
213580 TTTCTATTTT
213590 TTTTCGTTCTCTGTTTTTGCTGG
1 TTTT-GTTCTCTGTTTTTGCTGG
* *
213613 TTTTTTTTTTCTGTTTTTGCTGG
1 -TTTTGTTCTCTGTTTTTGCTGG
213636 TTGTTGTTCT
1 TT-TTGTTCT
213646 TTTCTTCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 2 0.07
23 21 0.78
24 4 0.15
ACGTcount: A:0.00, C:0.12, G:0.20, T:0.68
Consensus pattern (22 bp):
TTTTGTTCTCTGTTTTTGCTGG
Found at i:214057 original size:3 final size:3
Alignment explanation
Indices: 214049--214112 Score: 110
Period size: 3 Copynumber: 20.7 Consensus size: 3
214039 GGCCCGTTTG
214049 TAA TAA TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
214095 TAA TAA TAAA TAA TAA TA
1 TAA TAA T-AA TAA TAA TA
214113 GTAAATGGAG
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
3 53 0.90
4 6 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:214402 original size:122 final size:123
Alignment explanation
Indices: 214252--214538 Score: 345
Period size: 121 Copynumber: 2.4 Consensus size: 123
214242 ATGTTGAATA
* * * *
214252 AATTCTTCTCT-TTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCGCTG-GGGAGGATGTTGA
1 AATTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCGCTGAAGGAGGATGCTAA
* * * ** *
214315 CCTATTTCCTTCTGTGATAGAGTCCTTTAAAA-GGTTGAATAAGCTCTTCTCATTATG
66 CCTATCTCCTTCTGTGATAGAATCATGCAAAAGGGTTGAACAAGCTCTTCTCATTATG
* **
214372 AACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TTTCTCTGAAAAGGTTGATGC
1 AA-TTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCGCTG--AAGGAGGATGC
* * * *
214436 TAATCTATCTCTTTCTGTGATAGAATTATGCAAAAGGGTTGAACAAGCTCTTCTCATTGTG
63 TAACCTATCTCCTTCTGTGATAGAATCATGCAAAAGGGTTGAACAAGCTCTTCTCATTATG
214497 AA--CTTC-TTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT
1 AATTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT
214539 ATCTGGCAAT
Statistics
Matches: 143, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
120 2 0.01
121 48 0.34
122 36 0.25
124 32 0.22
125 25 0.17
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (123 bp):
AATTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCGCTGAAGGAGGATGCTAA
CCTATCTCCTTCTGTGATAGAATCATGCAAAAGGGTTGAACAAGCTCTTCTCATTATG
Found at i:214671 original size:113 final size:113
Alignment explanation
Indices: 214465--215025 Score: 766
Period size: 113 Copynumber: 5.0 Consensus size: 113
214455 ATAGAATTAT
** *
214465 GCAAAAGGGTTGAACAAGCTCTTCTCATTGTGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCT
1 GCAAAA-GGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
** * * * **
214526 CATTATGAACTTTATCTGGCAATGTTGATCCATCAAATGATGAATTCAA
65 CATTATGAACTCGAACTGGTAATGTTGATCCATCAATTGATGAATTTGA
* *
214575 ACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* *
214640 ATTATGAACTCGAACTGGTAATGCTGATCCATTGAA-TGATGAATTTGA
66 ATTATGAACTCGAACTGGTAATGTTGATCCA-TCAATTGATGAATTTGA
214688 GCGAAAA-GTTGAACAAATTCTTCTCATTATGAA--T-TTCTT-CTTCTTCAGATGACGAGTTCT
1 GC-AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCT
* * * *
214748 TCTCATTATGAACTCTACCT-GTCAATATTGATCCATCAATTGATGGATTTGA
62 TCTCATTATGAACTCGAACTGGT-AATGTTGATCCATCAATTGATGAATTTGA
* *
214800 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
214865 ATTATGAACTCGAACTGGTAATGTTGATCCATCAATTGATGGATTTGA
66 ATTATGAACTCGAACTGGTAATGTTGATCCATCAATTGATGAATTTGA
* *
214913 GCAAAAGGTTGAACAAATTCTGCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
214978 ATTATGAACTCGAACTGGTAATGTTGATCCATCAATTGATGGATTTGA
66 ATTATGAACTCGAACTGGTAATGTTGATCCATCAATTGATGAATTTGA
215026 ATCTTTGCTA
Statistics
Matches: 407, Mismatches: 27, Indels: 31
0.88 0.06 0.07
Matches are distributed among these distances:
109 34 0.08
110 10 0.02
111 10 0.02
112 80 0.20
113 247 0.61
114 10 0.02
115 5 0.01
116 11 0.03
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTCGAACTGGTAATGTTGATCCATCAATTGATGAATTTGA
Found at i:214817 original size:225 final size:222
Alignment explanation
Indices: 214465--215026 Score: 797
Period size: 225 Copynumber: 2.5 Consensus size: 222
214455 ATAGAATTAT
** * *
214465 GCAAAAGGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATT
1 GCAAAA-GGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAGTTCTTCTCATT
* * * * * **
214530 ATGAACTTTATCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTC
65 ATGAACTCTAACTGTCAATGTTGATCCATCAATTGATGGATTTGAACAAAAGGTTGAACAAATTC
*
214595 TTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCTCATTATGAACTCGAACTGGTA
130 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGTA
*
214660 ATGCTGATCCATTGAA-TGATGAATTTGA
195 ATGCTGATCCA-TCAATTGATGAATTTGA
214688 GCGAAAA-GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGACGAGTTCTTCTC
1 GC-AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGAT---GAGTTCTTCTC
* * *
214752 ATTATGAACTCTACCTGTCAATATTGATCCATCAATTGATGGATTTGAGCAAAAGGTTGAACAAA
62 ATTATGAACTCTAACTGTCAATGTTGATCCATCAATTGATGGATTTGAACAAAAGGTTGAACAAA
* *
214817 TTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTCGAACTG
127 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTG
* *
214882 GTAATGTTGATCCATCAATTGATGGATTTGA
192 GTAATGCTGATCCATCAATTGATGAATTTGA
* *
214913 GCAAAAGGTTGAACAAATTCTGCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--T-TTCTT-CTTCTTCAGATGAGTTCTTCTC
*
214978 ATTATGAACTCGAACTGGT-AATGTTGATCCATCAATTGATGGATTTGAA
62 ATTATGAACTCTAACT-GTCAATGTTGATCCATCAATTGATGGATTTGAA
215027 TCTTTGCTAA
Statistics
Matches: 303, Mismatches: 25, Indels: 19
0.87 0.07 0.05
Matches are distributed among these distances:
222 39 0.13
223 2 0.01
224 11 0.04
225 180 0.59
226 52 0.17
227 3 0.01
228 5 0.02
229 11 0.04
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (222 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAGTTCTTCTCATTA
TGAACTCTAACTGTCAATGTTGATCCATCAATTGATGGATTTGAACAAAAGGTTGAACAAATTCT
TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAACTGGTAA
TGCTGATCCATCAATTGATGAATTTGA
Found at i:215972 original size:93 final size:93
Alignment explanation
Indices: 215813--216288 Score: 778
Period size: 93 Copynumber: 5.1 Consensus size: 93
215803 CTTATTTCTA
* *
215813 CTATGAGCACATTCATCTTTCAAATCCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAG
1 CTATGAGCACATTCATCTTCCAAATTCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAG
215878 ATAACTCAAAGAACACTTCCAGAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
*
215906 CTATGAGCACATTCATCTTCCAAATTCAATGATTGGTTCTGTGGTTTCATACCAAACTAGATCAG
1 CTATGAGCACATTCATCTTCCAAATTCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAG
* *
215971 ATAACTCAAATAACATTTCCAGAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
* *
215999 CTATGAGCACATTCATCTTCCAAATTCAATGATTGGTT-TTTAGGGTTCATACCAAACCAGATCA
1 CTATGAGCACATTCATCTTCCAAATTCAATGATTGGTTCTGT-GGTTTCATACCAAACCAGATCA
*
216063 GATAACTCAAATAACACTTCCAGAAGATG
65 GATAACTCAAAGAACACTTCCAGAAGATG
* * * *
216092 CTATTAGCACATTCATCTTCCAAATTCAATGATTGGTTTTTGGGGTTT-ATACCAAACTAGATCA
1 CTATGAGCACATTCATCTTCCAAATTCAATGATTGG-TTCTGTGGTTTCATACCAAACCAGATCA
216156 GATAACTCAAAGAACACTTCCAGAAGATG
65 GATAACTCAAAGAACACTTCCAGAAGATG
* *
216185 CTATGAGCACATTCATCTTCCAAATTCAATGATTGGTTTTTGGGGTTT-ATACCAAACCAGATCA
1 CTATGAGCACATTCATCTTCCAAATTCAATGATTGG-TTCTGTGGTTTCATACCAAACCAGATCA
216249 GATAACTCAAAGAACACTTCCAGAAGATG
65 GATAACTCAAAGAACACTTCCAGAAGATG
216278 CTATGAGCACA
1 CTATGAGCACA
216289 CGGCACTTGT
Statistics
Matches: 363, Mismatches: 17, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
92 2 0.01
93 354 0.98
94 6 0.02
95 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (93 bp):
CTATGAGCACATTCATCTTCCAAATTCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAG
ATAACTCAAAGAACACTTCCAGAAGATG
Found at i:217297 original size:4 final size:4
Alignment explanation
Indices: 217290--217341 Score: 56
Period size: 4 Copynumber: 13.5 Consensus size: 4
217280 ACCTCTTTTT
* *
217290 TTTC TTTC TTTC TTT- TTT- TTTC TTTA TTT- TTTC TTTC TTTTT TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTTC TTTC
217336 TTTC TT
1 TTTC TT
217342 CAAGCATAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
3 9 0.21
4 30 0.71
5 3 0.07
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (4 bp):
TTTC
Found at i:217324 original size:29 final size:28
Alignment explanation
Indices: 217287--217341 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
217277 TTGACCTCTT
*
217287 TTTTTTCTTTCTTTCTTTTTTTTTCTTTA
1 TTTTTTCTTTCTTT-TTTTTCTTTCTTTA
217316 TTTTTTCTTTCTTTTTTTTCTTTCTT
1 TTTTTTCTTTCTTTTTTTTCTTTCTT
217342 CAAGCATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.84
Consensus pattern (28 bp):
TTTTTTCTTTCTTTTTTTTCTTTCTTTA
Found at i:224702 original size:15 final size:15
Alignment explanation
Indices: 224679--224710 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
224669 TGCAATGAAT
224679 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
224694 AATGCATGTATGCAA
1 AATGAATGTATGCAA
224709 AA
1 AA
224711 GGTATTGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:228600 original size:22 final size:25
Alignment explanation
Indices: 228553--228606 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 25
228543 TATAATTATG
*
228553 AGAAAAAAATAATTTATATATATTT
1 AGAAATAAATAATTTATATATATTT
*
228578 ATAAATAAAT-ATTTAT-T-TATTT
1 AGAAATAAATAATTTATATATATTT
228600 AGAAATA
1 AGAAATA
228607 TCAGAAAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 11 0.42
23 1 0.04
24 6 0.23
25 8 0.31
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (25 bp):
AGAAATAAATAATTTATATATATTT
Found at i:229860 original size:21 final size:21
Alignment explanation
Indices: 229812--229860 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
229802 ATTTTTTTTC
229812 GTTC-TCTGTTTTTGCTGGTT
1 GTTCTTCTGTTTTTGCTGGTT
* *
229832 TTTTTTCTGTTTTTGCTGGTT
1 GTTCTTCTGTTTTTGCTGGTT
229853 GTTCTTCT
1 GTTCTTCT
229861 TTTCTTCTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.00, C:0.14, G:0.20, T:0.65
Consensus pattern (21 bp):
GTTCTTCTGTTTTTGCTGGTT
Found at i:230285 original size:3 final size:3
Alignment explanation
Indices: 230277--230324 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
230267 GGCCCGTTTG
230277 TAA TAA TAA TAA -AA TAA TAA TAA TAA TAA -AA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
230323 TA
1 TA
230325 GTAAATGGAG
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 4 0.09
3 39 0.91
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:230299 original size:17 final size:17
Alignment explanation
Indices: 230277--230322 Score: 92
Period size: 17 Copynumber: 2.7 Consensus size: 17
230267 GGCCCGTTTG
230277 TAATAATAATAAAATAA
1 TAATAATAATAAAATAA
230294 TAATAATAATAAAATAA
1 TAATAATAATAAAATAA
230311 TAATAATAATAA
1 TAATAATAATAA
230323 TAGTAAATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAATAATAATAAAATAA
Found at i:232453 original size:15 final size:15
Alignment explanation
Indices: 232433--232464 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
232423 GATCAATACC
232433 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
232448 TTTTGCATACATTCA
1 TTTTGCATACATGCA
232463 TT
1 TT
232465 ATTCATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:236254 original size:9 final size:9
Alignment explanation
Indices: 236240--236271 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
236230 AAATGGCAAT
236240 CATTCTTTA
1 CATTCTTTA
236249 CATTCTTTA
1 CATTCTTTA
*
236258 CATTTTTTA
1 CATTCTTTA
236267 CATTC
1 CATTC
236272 ATTATTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (9 bp):
CATTCTTTA
Found at i:239827 original size:23 final size:21
Alignment explanation
Indices: 239796--239895 Score: 73
Period size: 21 Copynumber: 4.7 Consensus size: 21
239786 ATTATGCTTG
*
239796 AAGAAAAAATGAAATAGAAAAAA
1 AAGAGAAAA-GAAA-AGAAAAAA
*
239819 AAGAGAAAAG-AAA-AATAAA
1 AAGAGAAAAGAAAAGAAAAAA
*
239838 ATGA-AAAAGAAAAAGAAAAAA
1 AAGAGAAAAG-AAAAGAAAAAA
*
239859 AA-AGAAAAAAAAGAGAGAAAAA
1 AAGAGAAAAGAAA-AGA-AAAAA
*
239881 AAGAAGAAAATAAAA
1 AAG-AGAAAAGAAAA
239896 AAGGAGGGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
18 5 0.08
19 8 0.13
20 8 0.13
21 15 0.24
22 8 0.13
23 9 0.15
24 9 0.15
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (21 bp):
AAGAGAAAAGAAAAGAAAAAA
Found at i:239832 original size:12 final size:11
Alignment explanation
Indices: 239811--239895 Score: 65
Period size: 10 Copynumber: 7.9 Consensus size: 11
239801 AAAATGAAAT
239811 AGAAAAAAAAG
1 AGAAAAAAAAG
*
239822 AG-AAAAGAA-
1 AGAAAAAAAAG
* *
239831 A-AATAAAATG
1 AGAAAAAAAAG
239841 A-AAAAGAAAA-
1 AGAAAA-AAAAG
239851 AGAAAAAAAA-
1 AGAAAAAAAAG
239861 AGAAAAAAAAG
1 AGAAAAAAAAG
239872 AGAGAAAAAAAG
1 AGA-AAAAAAAG
239884 AAGAAAATAAAA
1 -AGAAAA-AAAA
239896 AAGGAGGGTC
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
9 5 0.08
10 25 0.42
11 12 0.20
12 11 0.18
13 7 0.12
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (11 bp):
AGAAAAAAAAG
Found at i:239834 original size:24 final size:24
Alignment explanation
Indices: 239807--239895 Score: 78
Period size: 24 Copynumber: 3.6 Consensus size: 24
239797 AGAAAAAATG
239807 AAATAGAAAAAAAAGAGAAAAGAA
1 AAATAGAAAAAAAAGAGAAAAGAA
239831 AAATA-AAATGAAAAAGA-AAAAGAAAA
1 AAATAGAAA--AAAAAGAGAAAAG--AA
*
239857 AAAAAGAAAAAAAAGAGAGAAA-AA
1 AAATAGAAAAAAAAGAGA-AAAGAA
239881 AAGA-AGAAAATAAAA
1 AA-ATAGAAAA-AAAA
239896 AAGGAGGGTC
Statistics
Matches: 55, Mismatches: 1, Indels: 17
0.75 0.01 0.23
Matches are distributed among these distances:
23 3 0.05
24 20 0.36
25 19 0.35
26 7 0.13
27 6 0.11
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (24 bp):
AAATAGAAAAAAAAGAGAAAAGAA
Done.