Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007935.1 Hibiscus syriacus cultivar Beakdansim tig00110345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1073174
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
File 6 of 6
Found at i:1048801 original size:14 final size:14
Alignment explanation
Indices: 1048784--1048825 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
1048774 TTCTTTATTA
1048784 CTCTTTTTATTTTT
1 CTCTTTTTATTTTT
*
1048798 CTC-TTTGATTTTT
1 CTCTTTTTATTTTT
*
1048811 CTTTTTTTCATTTTT
1 CTCTTTTT-ATTTTT
1048826 TCATTTTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 11 0.48
14 6 0.26
15 6 0.26
ACGTcount: A:0.07, C:0.14, G:0.02, T:0.76
Consensus pattern (14 bp):
CTCTTTTTATTTTT
Found at i:1048819 original size:8 final size:8
Alignment explanation
Indices: 1048806--1048835 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
1048796 TTCTCTTTGA
*
1048806 TTTTTCTT
1 TTTTTCAT
1048814 TTTTTCAT
1 TTTTTCAT
1048822 TTTTTCAT
1 TTTTTCAT
1048830 TTTTTC
1 TTTTTC
1048836 CCTTATGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTCAT
Found at i:1054851 original size:254 final size:254
Alignment explanation
Indices: 1054391--1054996 Score: 975
Period size: 254 Copynumber: 2.4 Consensus size: 254
1054381 ACTTTATTTT
* * * *
1054391 GGTCGGGTCGGATCGGGTTTTTTTAAGCGTGATATTCGGGTCGGG-ACGGGTTTAGGGTGAAAAA
1 GGTCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCGGGTTCGGGTTTAGGGTGAAAAA
1054455 AATCGGACCGACCCGAAAATATATATAATTCAGATCGGGTCGGATTAAGTCACTGTTTTTATTAA
66 AATCGGACCGACCCGAAAATATATATAATTCAGATCGGGTCGGATTAAGTCACTGTTTTTATTAA
* * *
1054520 ATAAAAATATTTTTTTATTATTTCGGTTCGGGTCGGGTTGGATTTCTAATTCATATATTCGGGTC
131 ATAAAAATATTTTATTATTATTTCGGTTCGGGTCGGGTCGGATTTCTAATTCATATATTCGGATC
* * *
1054585 GGGTCGGATGAAATTTTATTTTGTTCGGGTCTGGTCGGATTTTTTAAGTGTGATATTCG
196 GGGTCGGATGAAACTTTATTTTGTTCGGGTCGGGCCGGATTTTTTAAGTGTGATATTCG
*
1054644 GGTTGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCGGGTTCGGGTTTAGGGTGAAAAA
1 GGTCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCGGGTTCGGGTTTAGGGTGAAAAA
* * *
1054709 AACCAGACCGACCCGAAAATATATATAATTCAGGTCGGGTCGGATTAAGTCACTGTTTTTATTAA
66 AATCGGACCGACCCGAAAATATATATAATTCAGATCGGGTCGGATTAAGTCACTGTTTTTATTAA
*
1054774 ATACAAATATTTTATTATTATTTCAGG-TCGGGTCGGGTCGGATTTCTAATTCATATATTCGGAT
131 ATAAAAATATTTTATTATTATTTC-GGTTCGGGTCGGGTCGGATTTCTAATTCATATATTCGGAT
*
1054838 CGGGTCGGATGAAACTTTATTTTGTTCGGGTCGGGCCGGATTTTTTAAGTGTGATATTTG
195 CGGGTCGGATGAAACTTTATTTTGTTCGGGTCGGGCCGGATTTTTTAAGTGTGATATTCG
*
1054898 GGTCGAGTCGGGTCGGG-TTTTTTAAGTGTGATATTCGGGTCGGGTCGGATTTGGGTTTAGGGTG
1 GGTCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTC--G--GG-TTCGGGTTTAGGGTG
*
1054962 AAAAAAATCGGACCGACCCGAAAAAATATATAATT
61 AAAAAAATCGGACCGACCCGAAAATATATATAATT
1054997 TTACCTTATA
Statistics
Matches: 325, Mismatches: 21, Indels: 9
0.92 0.06 0.03
Matches are distributed among these distances:
253 65 0.20
254 209 0.64
255 3 0.01
257 2 0.01
258 46 0.14
ACGTcount: A:0.24, C:0.12, G:0.28, T:0.36
Consensus pattern (254 bp):
GGTCGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGGGTCGGGTTCGGGTTTAGGGTGAAAAA
AATCGGACCGACCCGAAAATATATATAATTCAGATCGGGTCGGATTAAGTCACTGTTTTTATTAA
ATAAAAATATTTTATTATTATTTCGGTTCGGGTCGGGTCGGATTTCTAATTCATATATTCGGATC
GGGTCGGATGAAACTTTATTTTGTTCGGGTCGGGCCGGATTTTTTAAGTGTGATATTCG
Found at i:1054896 original size:37 final size:37
Alignment explanation
Indices: 1054867--1054945 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
1054857 TTTTGTTCGG
1054867 GTCGGGCCGGATTTTTTAAGTGTGATATTTGGGTCGA
1 GTCGGGCCGGATTTTTTAAGTGTGATATTTGGGTCGA
* * * *
1054904 GTCGGGTCGGGTTTTTTAAGTGTGATATTCGGGTCGG
1 GTCGGGCCGGATTTTTTAAGTGTGATATTTGGGTCGA
1054941 GTCGG
1 GTCGG
1054946 ATTTGGGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.13, C:0.11, G:0.39, T:0.37
Consensus pattern (37 bp):
GTCGGGCCGGATTTTTTAAGTGTGATATTTGGGTCGA
Found at i:1054940 original size:32 final size:33
Alignment explanation
Indices: 1054862--1054949 Score: 106
Period size: 37 Copynumber: 2.6 Consensus size: 33
1054852 CTTTATTTTG
*
1054862 TTCGGGTCGGGCCGGATTTTTTAAGTGTGATATT
1 TTCGGGTCGGGTCGGATTTTTTAAGTGTGATA-T
* *
1054896 TGGGTCGAGTCGGGTCGGGTTTTTTAAGTGTGATA-
1 T---TCGGGTCGGGTCGGATTTTTTAAGTGTGATAT
1054931 TTCGGGTCGGGTCGGATTT
1 TTCGGGTCGGGTCGGATTT
1054950 GGGTTTAGGG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
32 16 0.35
34 1 0.02
35 1 0.02
37 28 0.61
ACGTcount: A:0.12, C:0.11, G:0.38, T:0.39
Consensus pattern (33 bp):
TTCGGGTCGGGTCGGATTTTTTAAGTGTGATAT
Found at i:1061223 original size:15 final size:15
Alignment explanation
Indices: 1061203--1061252 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
1061193 AATAATAAAA
1061203 TAAAA-TAACAATAAT
1 TAAAAGTAA-AATAAT
* *
1061218 TAAAATTAAAAAAAT
1 TAAAAGTAAAATAAT
1061233 TAAAAGTAATAAT-AT
1 TAAAAGTAA-AATAAT
1061248 TAAAA
1 TAAAA
1061253 ACTAATGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 25 0.83
16 5 0.17
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (15 bp):
TAAAAGTAAAATAAT
Found at i:1062493 original size:3 final size:3
Alignment explanation
Indices: 1062464--1062522 Score: 55
Period size: 3 Copynumber: 19.0 Consensus size: 3
1062454 TTGGGTTTTG
* * * * *
1062464 TAA TAT TAA TAAA TAA TATA TAT TAA TAA TAA TTA TTA TTA TAA TAA
1 TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
1062511 TAA TAA TAA TAA
1 TAA TAA TAA TAA
1062523 ATTTTAAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
3 42 0.88
4 6 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:1062533 original size:24 final size:24
Alignment explanation
Indices: 1062487--1062534 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
1062477 TAATATATAT
* *
1062487 TAATAATAATTATTATTATAATAA
1 TAATAATAATAATTATTAAAATAA
1062511 TAATAATAATAAATT-TTAAAATAA
1 TAATAATAAT-AATTATTAAAATAA
1062535 AAAAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
TAATAATAATAATTATTAAAATAA
Found at i:1063030 original size:113 final size:113
Alignment explanation
Indices: 1062748--1063756 Score: 1532
Period size: 113 Copynumber: 9.0 Consensus size: 113
1062738 TAGAGTCATT
* ** * *
1062748 CAAAAGGTTGAATAAGCTCTTCTTATTATGAAC-T-TTC-T-CTTCTTCAGATGAATTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*** * * * * **
1062809 TTATGAACTCTTTCTGGAAGAGCTAATCCATCAAATGATGAATTCAAG
66 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAG
* * *
1062857 CAAAA-GTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
1062921 TTATGAACTCTAACTGGAAAAGCTAATCCATCAAGTGATGGATTTGAG
66 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAG
* *
1062969 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCTTTCATCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
1063034 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGGTTTGAG
66 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAG
* *
1063082 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTTTTCTCG
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
1063147 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
66 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAG
* *
1063195 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTTTTCAGATGAGTTTTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
1063260 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
66 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAG
* *
1063308 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTTTTCTCG
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
1063373 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
66 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAG
*
1063421 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCTGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
1063486 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
66 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAG
1063534 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTC--CCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
**** *
1063597 TTATGAACTTTTTCTGGAAAAGCTGATCCATC-AGATAATGGATTTGAG
66 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAG-TGATGGATTTGAG
* * *
1063645 CAAAAGGTTGAACAAATTCTTGTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTAA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
****
1063710 TTATGAACTTTTTCTGGAAAAGCTGATCCATC-AGATGATGGATTTGA
66 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAG-TGATGGATTTGA
1063757 ATCTTTGCTA
Statistics
Matches: 849, Mismatches: 43, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
108 25 0.03
109 6 0.01
110 5 0.01
111 100 0.12
112 67 0.08
113 646 0.76
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (113 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAG
Found at i:1064181 original size:22 final size:22
Alignment explanation
Indices: 1064156--1064210 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
1064146 CATAAAGTTT
*
1064156 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
*
1064178 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
1064200 TCATCTTTGAA
1 TCATCTTTGAA
1064211 GAGTGTAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:1064692 original size:54 final size:53
Alignment explanation
Indices: 1064570--1064768 Score: 219
Period size: 54 Copynumber: 3.8 Consensus size: 53
1064560 ACTGGTTCAT
* * *
1064570 AAAAATTTGACAATACATTCAT-CTTTTCCTGTGGTTTCTG-TC-GAG-ATGTA
1 AAAAATTTGACAACACATTCATCCTTTT-CTGTGGCTTCTGCTCAGAGTTTGTA
* *
1064620 AAACACTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGATGTTTGTA
1 AAAAATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGA-GTTTGTA
* * **
1064674 AAAAATTTGACAACACATTCATCC-TTTCTTGTGGTTTTTGCTCAGACGTTCATA
1 AAAAATTTGACAACACATTCATCCTTTTC-TGTGGCTTCTGCTCAGA-GTTTGTA
***
1064728 AAGTGTTTGACAACACATTCATCCTTTTCTGTGGCTTCTGC
1 AAAAATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGC
1064769 CAAGATTTCT
Statistics
Matches: 125, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
50 30 0.24
51 7 0.06
52 2 0.02
53 5 0.04
54 77 0.62
55 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (53 bp):
AAAAATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGCTCAGAGTTTGTA
Found at i:1065929 original size:35 final size:35
Alignment explanation
Indices: 1065869--1065935 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
1065859 TCTTGTTGAG
1065869 ATGAGCCTCCAAAAATGCCCAAATATTCATATTGCT
1 ATGAGCCTCCAAAAATGCCCAAATATTC-TATTGCT
* *
1065905 ATGAGCCTTC-AAAATGCCCCAATATTCTATT
1 ATGAGCCTCCAAAAATGCCCAAATATTCTATT
1065936 TCTGGTAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 4 0.14
35 16 0.55
36 9 0.31
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.30
Consensus pattern (35 bp):
ATGAGCCTCCAAAAATGCCCAAATATTCTATTGCT
Found at i:1067203 original size:115 final size:114
Alignment explanation
Indices: 1066889--1067229 Score: 574
Period size: 114 Copynumber: 3.0 Consensus size: 114
1066879 GATCATGCAG
* * * * * * *
1066889 TTCATCTTTCAATTCCAATGATCGGTTCTGGGGTTCCTACCGAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTAAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
* *
1066954 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
* *
1067003 TTCATCTTTTAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAGGA
1 TTCATCTTTAAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
1067068 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
1067117 TTCATCTTTAAAATCCAATGATTGGTTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTAAAATCCAATGATTGG-TTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1067182 AACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCA
65 AACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCA
1067230 CATGACACTT
Statistics
Matches: 214, Mismatches: 12, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
114 128 0.60
115 86 0.40
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.33
Consensus pattern (114 bp):
TTCATCTTTAAAATCCAATGATTGGTTTTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
Found at i:1069501 original size:11 final size:11
Alignment explanation
Indices: 1069485--1069523 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
1069475 TCAATTTTCC
*
1069485 TTTTTCTTTTT
1 TTTTTCCTTTT
1069496 TTTTTCCTTTT
1 TTTTTCCTTTT
*
1069507 TTTTCCCTTTT
1 TTTTTCCTTTT
1069518 TTTTTC
1 TTTTTC
1069524 TTCTTTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTCCTTTT
Found at i:1071155 original size:34 final size:35
Alignment explanation
Indices: 1071112--1071178 Score: 127
Period size: 34 Copynumber: 1.9 Consensus size: 35
1071102 TCTTCTTAGA
1071112 CTATAGGCCAATCTCGAATTACATCC-TGGGAGAC
1 CTATAGGCCAATCTCGAATTACATCCATGGGAGAC
1071146 CTATAGGCCAATCTCGAATTACATCCATGGGAG
1 CTATAGGCCAATCTCGAATTACATCCATGGGAG
1071179 CCTTTTGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 26 0.81
35 6 0.19
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (35 bp):
CTATAGGCCAATCTCGAATTACATCCATGGGAGAC
Found at i:1072862 original size:13 final size:14
Alignment explanation
Indices: 1072814--1072866 Score: 63
Period size: 13 Copynumber: 3.8 Consensus size: 14
1072804 TTGTGCAATA
* *
1072814 CAAATGCAAAGATG
1 CAAATGTAAATATG
1072828 CCAAATGTAAATATG
1 -CAAATGTAAATATG
1072843 CAAATGTAAA-ATG
1 CAAATGTAAATATG
*
1072856 TAAATGTAAAT
1 CAAATGTAAAT
1072867 TATTTAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.35
14 10 0.29
15 12 0.35
ACGTcount: A:0.51, C:0.09, G:0.15, T:0.25
Consensus pattern (14 bp):
CAAATGTAAATATG
Done.