Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007937.1 Hibiscus syriacus cultivar Beakdansim tig00110347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 820613
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 4
Found at i:547 original size:12 final size:12
Alignment explanation
Indices: 532--565 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
522 ATTGTTGATA
532 GAATTTATGACT
1 GAATTTATGACT
544 GAATTTATGACT
1 GAATTTATGACT
556 GAATTTATGA
1 GAATTTATGA
566 GGAAAGAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41
Consensus pattern (12 bp):
GAATTTATGACT
Found at i:769 original size:60 final size:60
Alignment explanation
Indices: 647--772 Score: 186
Period size: 59 Copynumber: 2.1 Consensus size: 60
637 AATTCGTTAA
*
647 AATG-TATATATAAATAAAATATTATATTTTATGTTCTGATGAACATATCTTTTCGTCTG
1 AATGTTATATATAAATAAAATATTATATTTTATGTTCTGATGAACATATCTTTTCGTCAG
* *
706 AATGTTATATATAAAT-AAATATTATA-TTTATGTTTTCGATGAACATATCTTTTCTTTCAG
1 AATGTTATATATAAATAAAATATTATATTTTATGTTCT-GATGAACATATCTTTTC-GTCAG
766 AATGTTA
1 AATGTTA
773 AAAAATATAA
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
58 9 0.15
59 31 0.51
60 21 0.34
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.47
Consensus pattern (60 bp):
AATGTTATATATAAATAAAATATTATATTTTATGTTCTGATGAACATATCTTTTCGTCAG
Found at i:975 original size:17 final size:17
Alignment explanation
Indices: 953--998 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
943 ACCTAAAATT
953 AATAATAATATAATTGA
1 AATAATAATATAATTGA
*
970 AATAAT-ATATTAATTTA
1 AATAATAATA-TAATTGA
987 AA-AA-AATATAAT
1 AATAATAATATAAT
999 AATAATAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 4 0.15
16 8 0.31
17 14 0.54
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (17 bp):
AATAATAATATAATTGA
Found at i:9259 original size:13 final size:13
Alignment explanation
Indices: 9241--9284 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
9231 TGTCACGTCC
*
9241 ATATTTAAAAAAA
1 ATATTTTAAAAAA
* *
9254 ATATTTTTAAATA
1 ATATTTTAAAAAA
9267 ATATTTTAAAAAA
1 ATATTTTAAAAAA
*
9280 TTATT
1 ATATT
9285 AACGTGTCAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATTTTAAAAAA
Found at i:13440 original size:126 final size:128
Alignment explanation
Indices: 13244--13480 Score: 354
Period size: 126 Copynumber: 1.9 Consensus size: 128
13234 TTAATATATG
* *
13244 TATATATTTAAGGTCATCAACTTTTGAAAAAAAAAATTAGTGTATCCCTTGAAAAATTTTACACT
1 TATATATTTAAGGTCATCAACTTTTG--AAAAAAAATTAGTGTATCCCTTAAAAAAATTTACACT
*
13309 AAATGTAATC-GTTAAAATGAG-AAAAAATATATTTAATTCTTTGACCAAACGAATCATATATTT
64 AAATGTAA-CAGTTAAAATAAGAAAAAAATATATTTAATTCTTTGACCAAACGAATCATATATTT
13372 A
128 A
* * *
13373 TATATATTTAAGGTCATCAACTTTTG-GAAAAAATTAGTGTGTTCCTTAAAAAAATTTACACTAA
1 TATATATTTAAGGTCATCAACTTTTGAAAAAAAATTAGTGTATCCCTTAAAAAAATTTACACTAA
* *
13437 ATGTAACATTTAAAATAAGAAAAAAATCTATTTAATTCTTTGAC
66 ATGTAACAGTTAAAATAAGAAAAAAATATATTTAATTCTTTGAC
13481 TAACAGAATC
Statistics
Matches: 98, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
125 1 0.01
126 48 0.49
127 23 0.23
129 26 0.27
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.36
Consensus pattern (128 bp):
TATATATTTAAGGTCATCAACTTTTGAAAAAAAATTAGTGTATCCCTTAAAAAAATTTACACTAA
ATGTAACAGTTAAAATAAGAAAAAAATATATTTAATTCTTTGACCAAACGAATCATATATTTA
Found at i:15211 original size:20 final size:20
Alignment explanation
Indices: 15161--15215 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
15151 GCAAATTACA
*
15161 AATTCGCGTTGCGAATTTGG
1 AATTCGCGTTGCGAAATTGG
* *
15181 AA-ACTGTGTTGCGAAATTGG
1 AATTC-GCGTTGCGAAATTGG
15201 AATTCGCGTTGCGAA
1 AATTCGCGTTGCGAA
15216 TTAGTTGGTC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (20 bp):
AATTCGCGTTGCGAAATTGG
Found at i:16396 original size:23 final size:23
Alignment explanation
Indices: 16370--16417 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
16360 ATAAAGTACA
*
16370 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
16393 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
16416 AT
1 AT
16418 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:16925 original size:23 final size:23
Alignment explanation
Indices: 16890--16985 Score: 147
Period size: 23 Copynumber: 4.2 Consensus size: 23
16880 ATACTTTACA
* *
16890 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
16913 ATATAAACGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
16936 ATATAAACTCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
16959 ATATAAGCGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
16982 ATAT
1 ATAT
16986 TTTTACCTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:17377 original size:23 final size:23
Alignment explanation
Indices: 17351--17409 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
17341 AACCACTACC
17351 TATTACATTATATAAACGATACA
1 TATTACATTATATAAACGATACA
* * *
17374 TATTACATTATATAAGCGCTACC
1 TATTACATTATATAAACGATACA
*
17397 TATTACATCATAT
1 TATTACATTATAT
17410 TTTTACCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (23 bp):
TATTACATTATATAAACGATACA
Found at i:17865 original size:23 final size:23
Alignment explanation
Indices: 17839--17897 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
17829 AAGCACTACA
17839 TATTACATTATATAAACGATACC
1 TATTACATTATATAAACGATACC
* *
17862 TATTACATTATATAAGCGCTACC
1 TATTACATTATATAAACGATACC
*
17885 TATTACATCATAT
1 TATTACATTATAT
17898 TTTTACCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.37
Consensus pattern (23 bp):
TATTACATTATATAAACGATACC
Found at i:18090 original size:23 final size:23
Alignment explanation
Indices: 18064--18151 Score: 140
Period size: 23 Copynumber: 3.8 Consensus size: 23
18054 TGATTGTTTT
*
18064 GATACCTATTACATTATATAAAC
1 GATACCTATTACATTATATAAGC
18087 GATACCTATTACATTATATAAGC
1 GATACCTATTACATTATATAAGC
*
18110 GCTACCTATTACATTATATAAGC
1 GATACCTATTACATTATATAAGC
* *
18133 GCTACCTATTACATCATAT
1 GATACCTATTACATTATAT
18152 TTTTACATAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 62 1.00
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35
Consensus pattern (23 bp):
GATACCTATTACATTATATAAGC
Found at i:18354 original size:22 final size:23
Alignment explanation
Indices: 18317--18380 Score: 85
Period size: 22 Copynumber: 2.8 Consensus size: 23
18307 TGATTGTTTT
18317 GATACCTATTACATTATATAAAC
1 GATACCTATTACATTATATAAAC
* *
18340 GATA-CTATTATATTATATAAGC
1 GATACCTATTACATTATATAAAC
* *
18362 GCTACCTATTACATCATAT
1 GATACCTATTACATTATAT
18381 TTTTACCTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 19 0.54
23 16 0.46
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.38
Consensus pattern (23 bp):
GATACCTATTACATTATATAAAC
Found at i:18713 original size:20 final size:21
Alignment explanation
Indices: 18688--18727 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
18678 TTCCACAGTG
*
18688 AAAAAA-GTATAGACACTTTT
1 AAAAAATGGATAGACACTTTT
*
18708 AAAAAATGGATAGATACTTT
1 AAAAAATGGATAGACACTTT
18728 ACAATATAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.30
Consensus pattern (21 bp):
AAAAAATGGATAGACACTTTT
Found at i:18785 original size:23 final size:23
Alignment explanation
Indices: 18731--18800 Score: 101
Period size: 21 Copynumber: 3.2 Consensus size: 23
18721 ATACTTTACA
*
18731 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
18754 ATA-AA-CGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
18775 ATATAAGCGCTACCTA-TACATC
1 ATATAAGCGCTACCTATTACATT
18797 ATAT
1 ATAT
18801 TTTACCTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
21 18 0.42
22 13 0.30
23 12 0.28
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.33
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:19227 original size:484 final size:487
Alignment explanation
Indices: 18569--19495 Score: 1600
Period size: 484 Copynumber: 1.9 Consensus size: 487
18559 ATATTTAGAA
*
18569 TTTTAATTTAATATAATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACTAAAT
1 TTTTAATTTAATATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAAT
*
18634 TAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATA
66 TAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATA
* *
18699 GACACTTTTAAAAAATGGATAGATACTTTACAATATAAGCACTACCTATTACA-T-TATAAACGC
131 GACACTTTTAAAAAATAGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGA
18762 TACCTATTACATTATATAAGCGCTACCTA-TACATCATA-TTTTACCTATTATATTGAAAGTGTC
196 TACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTC
*
18825 CATAC-TTTTATAAAAATGATCGATACTTTGTTTAAAGTTATGT-ATTTATGTTTCAATTTTTTT
261 CATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTT
* * *
18888 TAATAGTGTTTCATGTTTTCCAACTACAATATTAATTTAATAATTTCATTTACACAAAAAAATAT
325 TAATAATGCTTCATATTTTCCAACTACAATATTAATTTAATAATTTCATTTACACAAAAAAATAT
*
18953 TTGATTGTTTTGAGATTTTATAAAATATTATTTAGAA-TTTAAATTTAACAATATTAATCAAAGA
390 TTGATTGTTTTGAGATTTTATAAAATAATATTTAGAATTTTAAATTTAACAATATTAATCAAAGA
19017 TAATAATAAATACGTAATATATATGTTTATTGT
455 TAATAATAAATACGTAATATATATGTTTATTGT
19050 TTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTA
1 TTTTAATTTAAT-ATAATATAT--CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTA
19115 AATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGT
63 AATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGT
19180 ATAGACACTTTTATAAAAA-AGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAA
128 ATAGACACTTTTA-AAAAATAGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAA
*
19244 ACGATATCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
192 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
19309 TGTCCATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
257 TGTCCATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
* * * *
19374 TTTTAATAATGCTTCATATTTTTCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAAT
322 TTTTAATAATGCTTCATATTTTCCAACTACAATATTAATTTAATAATTTCATTTACACAAAAAAA
* * *
19439 TATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATA
387 TATTTGATTGTTTTGAGATTTTATAAAATAATATTTAGAATTTTAAATTTAACAATA
19496 ATATATATCG
Statistics
Matches: 418, Mismatches: 17, Indels: 13
0.93 0.04 0.03
Matches are distributed among these distances:
481 12 0.03
482 9 0.02
484 153 0.37
485 6 0.01
486 36 0.09
487 9 0.02
488 30 0.07
489 136 0.33
490 27 0.06
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (487 bp):
TTTTAATTTAATATAATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAAT
TAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATA
GACACTTTTAAAAAATAGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGA
TACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTC
CATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTTTTTT
AATAATGCTTCATATTTTCCAACTACAATATTAATTTAATAATTTCATTTACACAAAAAAATATT
TGATTGTTTTGAGATTTTATAAAATAATATTTAGAATTTTAAATTTAACAATATTAATCAAAGAT
AATAATAAATACGTAATATATATGTTTATTGT
Found at i:19240 original size:21 final size:21
Alignment explanation
Indices: 19210--19282 Score: 58
Period size: 23 Copynumber: 3.3 Consensus size: 21
19200 GATAGATACT
*
19210 TTACAATATAAGCACTACCTA
1 TTACATTATAAGCACTACCTA
* *
19231 TTACATTATATA-AACGATATCTA
1 TTACATTATA-AGCAC--TACCTA
*
19254 TTACATTATATAAGCGCTACCTA
1 TTACA-T-TATAAGCACTACCTA
19277 TTACAT
1 TTACAT
19283 CATATTTTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
21 11 0.28
22 2 0.05
23 20 0.50
24 2 0.05
25 5 0.12
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (21 bp):
TTACATTATAAGCACTACCTA
Found at i:19254 original size:23 final size:23
Alignment explanation
Indices: 19225--19287 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
19215 ATATAAGCAC
19225 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* * *
19248 TATCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
19271 TACCTATTACATCATAT
1 TACCTATTACATTATAT
19288 TTTTACCTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:19665 original size:20 final size:20
Alignment explanation
Indices: 19636--19686 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
19626 GATAGAAACT
*
19636 TTACAATATAACCACTACCTA
1 TTACATTATAACCA-TACCTA
*
19657 -TACATTATAAACGATACCTA
1 TTACATTAT-AACCATACCTA
19677 TTACATTATA
1 TTACATTATA
19687 TAAGCGCTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:19697 original size:23 final size:22
Alignment explanation
Indices: 19641--19710 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 22
19631 AAACTTTACA
*
19641 ATATAACCACTACCTA-TACATT
1 ATATAA-CGCTACCTATTACATT
*
19663 ATA-AACGATACCTATTACATT
1 ATATAACGCTACCTATTACATT
*
19684 ATATAAGCGCTACCTATTACATC
1 ATATAA-CGCTACCTATTACATT
19707 ATAT
1 ATAT
19711 TTTTACCTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
20 7 0.17
21 11 0.27
22 5 0.12
23 18 0.44
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (22 bp):
ATATAACGCTACCTATTACATT
Found at i:20108 original size:912 final size:920
Alignment explanation
Indices: 17659--20973 Score: 5008
Period size: 912 Copynumber: 3.6 Consensus size: 920
17649 ATGTTTATTG
* * *
17659 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGATGTCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
17724 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
* *
17789 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACATATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
17854 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
17919 TGTCCATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
*
17984 TTTTTAATAATGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
326 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
** * * * ** ** *
18049 TTATTTGATTGTTTTGATACCT-ATTACAT--TATATA-AACGATACCTATT-ACATTATATAAG
391 TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAA-TTTAAAT-TTAACAATAT-TAAG
** ** * * * *** ** ** * *
18109 CGCTACCTATTACATTATATAAGCGCTACCTAT-TACATCATATTTTTACATATT-ATATTGAA-
453 CGAAAGATAATA-A-TAAATATGTAATATATATGTTTAT--TGTTTTTA-AT-TTAATAAT-AAT
* * * ** *** ** *
18171 AGTGT-CCAT-ACTTTTTATAAAAA-GGATCGA-TACTTTGTTTA-AAGTTA-TGTAATT--TAT
511 A-TATACCGTAAC---GTA-AAAAATAAATC-ATTA-GACGCCTATAA-TTACT-AAATTAATAT
* ** * **** * * *
18228 GTTTCAA-T--TTTTTTA-ATAA--TGT---TTCATGTTTTCCAC-CT-ACAATATTAA-TTTA-
567 CTTAAAACTCACTCAAAAGATAACCT-TAAATTAATGTTTTCCACAGTGA-AA-A--AAGTATAG
* * * * * * **
18280 ATAATTTCATTTGCACAAAAA-AT---TA-TTT-GATTGTTTTG-A-TACCTATTACATTATATA
627 ACACTTT--TAT--A-AAAAAGATAGATACTTTACAAT-ATAAGCACTACCTATTACATTATATA
*
18337 AACGATACTATTATATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
686 AACGATACTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
18402 TGTCCATACTTTTTATAAAAATGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
751 TGTCCATACTTTTTATAAAAATGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
18467 TTTTAATAGTGTTTCATGTTTTTCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA-
816 TTTTAATAGTGTTTCATGTTTTTCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAAT
18531 TATTTGA-TGTTTTGATA-TTTATAAAATAATATTTAGAA
881 TATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
18569 -TTTTAATTTAAT-AT-A-ATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
18630 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
*
18695 TATAGACACTTTTA-AAAAATGGATAGATACTTTACAATATAAGCACTACCTATTACA-T-TATA
131 TATAGACACTTTTATAAAAA-GGATAGATACTTTACAATATAACCACTACCTATTACATTATATA
*
18757 AACGCTACCTATTACATTATATAAGCGCTACCTA-TACATCATA-TTTTACCTATTATATTGAAA
195 AACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAA
*
18820 GTGTCCATAC-TTTTATAAAAATGATCGATACTTTGTTTAAAGTTATGT-ATTTATGTTTCAATT
260 GTGTCCATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATT
* *
18883 TTTTTTAATAGTGTTTCATGTTTTCCAACTACAATATTAATTTAATAATTTCATTTACACAAAAA
325 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAA
* * * * *
18948 AATATTTGATTGTTTTGAGATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAATC-
390 ATTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAATTTAAATTTAACAATATTAAGCG
*
19012 AAAGATAATAATAAATACGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGT
455 AAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGT
19077 AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
520 AACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
*
19142 GATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAAGATAGAT
585 GATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAAGATAGAT
19207 ACTTTACAATATAAGCACTACCTATTACATTATATAAACGATATCTATTACATTATATAAGCGCT
650 ACTTTACAATATAAGCACTACCTATTACATTATATAAACGATA-CTATTACATTATATAAGCGCT
*
19272 ACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGA
714 ACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGA
* * *
19337 TACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAATGCTTCATATTTTTCACCT
779 TACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTTCACCT
19402 ACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAA
844 ACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAA
19467 TAATATTTAGAA
909 TAATATTTAGAA
19479 TTTTTAATTTAATAATAATATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
*
19544 AAATTAATATCTTAAAACTCACTC-AAAGATAA-CTTAAATTAAT-ATTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
* *
19606 TATAGACAC-TTTATAAAAATGATAGAAACTTTACAATATAACCACTACCTA-TACA-T-TATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
19667 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
* *
19732 TGTCTATACTTTTTAT-AAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTTAATTT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
19796 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
326 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
19861 TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAATTTAAATTTAACAATATTAA-CGA
391 TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAATTTAAATTTAACAATATTAAGCGA
19925 AAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTA
456 AAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTA
19990 ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAG
521 ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAG
* *
20055 ATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATA
586 ATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAAGATAGATA
*
20120 CTTTACAATATAAGCACTACATATTACATTATATAAACGATACATATTACATTATATAAGCGCTA
651 CTTTACAATATAAGCACTACCTATTACATTATATAAACGATAC-TATTACATTATATAAGCGCTA
* *
20185 CTTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATTGAT
715 CCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGAT
* *
20250 ATTTTGTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTA
780 ACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTTCACCTA
*
20315 CAATATTAATTTAATAATTTCATTTGCATAAAAAATTATTTGATTGTTTTGATATTTTATAAAAT
845 CAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAAT
20380 AATATTTAGAA
910 AATATTTAGAA
*
20391 TTTTAAATTTAATAATAATATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
20456 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
*
20521 TATAGACACTTTTATAAAAAGGATAGGTACTTTACAATATAACCACTACCTATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
20586 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
* *
20651 TGTCCATACTTTTTATAAAAATGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAAATT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
*
20716 TTTTTAATAGCGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
326 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
* *
20781 TTATTTGATTGTTTTGGTATTTGATAAAATAATATTTAGAATTTAAATTTAACAATATTAA-CCA
391 TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAATTTAAATTTAACAATATTAAGCGA
20845 AAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTA
456 AAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTA
20910 ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
521 ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAA
20974 TATGTATATA
Statistics
Matches: 2230, Mismatches: 114, Indels: 112
0.91 0.05 0.05
Matches are distributed among these distances:
894 16 0.01
895 10 0.00
896 13 0.01
897 11 0.00
898 9 0.00
899 18 0.01
900 107 0.05
901 48 0.02
902 41 0.02
903 28 0.01
904 62 0.03
905 12 0.01
906 184 0.08
907 183 0.08
908 9 0.00
909 64 0.03
910 63 0.03
911 105 0.05
912 693 0.31
913 17 0.01
914 81 0.04
915 27 0.01
916 39 0.02
917 4 0.00
918 1 0.00
919 85 0.04
920 300 0.13
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.41
Consensus pattern (920 bp):
TTTTTAATTTAATAATAATATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
TGTCCATACTTTTTATAAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAATTTAAATTTAACAATATTAAGCGA
AAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTA
ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAG
ATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAAAAAAGATAGATA
CTTTACAATATAAGCACTACCTATTACATTATATAAACGATACTATTACATTATATAAGCGCTAC
CTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATA
CTTTGTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTTCACCTAC
AATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATA
ATATTTAGAA
Found at i:20163 original size:23 final size:23
Alignment explanation
Indices: 20137--20199 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
20127 ATATAAGCAC
20137 TACATATTACATTATATAAACGA
1 TACATATTACATTATATAAACGA
* *
20160 TACATATTACATTATATAAGCGC
1 TACATATTACATTATATAAACGA
* *
20183 TACTTATTACATCATAT
1 TACATATTACATTATAT
20200 TTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (23 bp):
TACATATTACATTATATAAACGA
Found at i:20390 original size:489 final size:483
Alignment explanation
Indices: 19479--20407 Score: 1610
Period size: 489 Copynumber: 1.9 Consensus size: 483
19469 ATATTTAGAA
* *
19479 TTTTTAATTTAATAATAATATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
19544 AAATTAATATCTTAAAACTCACTCAAAGATAACTTAAATTAATATTTCCACAGTGAAAAAAGTAT
66 AAATTAATATCTTAAAACTCACTCAAAGATAACTTAAATTAATATTTCCACAGTGAAAAAAGTAT
* *
19609 AGACACTTTATAAAAATGATAGAAACTTTACAATATAACCACTACCTATACATTATAAACGATAC
131 AGACACTTTATAAAAAGGATAGAAACTTTACAATATAACCACTACATATACATTATAAACGATAC
* *
19674 CTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCTAT
196 ATATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCAT
*
19739 ACTTTTTATAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTTAATTTTTTTTAAT
261 ACTTTTTATAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
19804 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGA
326 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGA
19869 TTGTTTTGATATTTGATAAAATAATATTTAGAA-TTTAAATTTAACAATATTAACGAAAGATAAT
391 TTGTTTTGATATTTGATAAAATAATATTTAGAATTTTAAATTTAACAATATTAACGAAAGATAAT
19933 AATAAATATGTAATATATATGTTTATTG
456 AATAAATATGTAATATATATGTTTATTG
19961 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
*
20026 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTC-AAAGATAA-CTTAAATTAAT-ATTTCCACAGTGAAAAAAG
* * *
20091 TATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACATATTACATTATATAA
128 TATAGACAC-TTTATAAAAAGGATAGAAACTTTACAATATAACCACTACATA-TACA-T-TATAA
*
20156 ACGATACATATTACATTATATAAGCGCTACTTATTACATCATATTTTTACCTATTATATTGAAAG
189 ACGATACATATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
* * *
20221 TGTCCATACTTTTTATAAAAATGATTGATATTTTGTTTAAAGTTATGTAATTTATGTTTCAA-TT
254 TGTCCATACTTTTTAT-AAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
*
20285 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCATAAAAAA
318 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
* *
20350 TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTAAATTTAATAATA
383 TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAATTTTAAATTTAACAATA
20408 ATATATATCG
Statistics
Matches: 420, Mismatches: 18, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
482 87 0.21
483 8 0.02
484 11 0.03
485 26 0.06
486 38 0.09
487 4 0.01
488 1 0.00
489 189 0.45
490 56 0.13
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (483 bp):
TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
AAATTAATATCTTAAAACTCACTCAAAGATAACTTAAATTAATATTTCCACAGTGAAAAAAGTAT
AGACACTTTATAAAAAGGATAGAAACTTTACAATATAACCACTACATATACATTATAAACGATAC
ATATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCAT
ACTTTTTATAAAAGGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGA
TTGTTTTGATATTTGATAAAATAATATTTAGAATTTTAAATTTAACAATATTAACGAAAGATAAT
AATAAATATGTAATATATATGTTTATTG
Found at i:20593 original size:23 final size:23
Alignment explanation
Indices: 20567--20629 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
20557 ATATAACCAC
20567 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
20590 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
20613 TACCTATTACATCATAT
1 TACCTATTACATTATAT
20630 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:20828 original size:430 final size:430
Alignment explanation
Indices: 19961--20837 Score: 1594
Period size: 430 Copynumber: 2.0 Consensus size: 430
19951 ATGTTTATTG
*
19961 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTAAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
20026 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
* *
20091 TATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACATATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACATATTACATTATATAA
*
20156 ACGATACATATTACATTATATAAGCGCTACTTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACATATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
* *
20221 TGTCCATACTTTTTATAAAAATGATTGATATTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
261 TGTCCATACTTTTTATAAAAATGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
* *
20286 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCATAAAAAAT
326 TTTTAATAGCGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAAT
*
20351 TATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
391 TATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAA
* *
20391 TTTTAAATTTAATAATAATATATATCGTAACGTGAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTAAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
20456 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
* *
20521 TATAGACACTTTTATAAAAAGGATAGGTACTTTACAATATAACCACTACCTATTACATTATATAA
131 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACATATTACATTATATAA
*
20586 ACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGATACATATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
20651 TGTCCATACTTTTTATAAAAATGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAAATT
261 TGTCCATACTTTTTATAAAAATGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTC-AATT
20716 TTTTTAATAGCGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
325 TTTTTAATAGCGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
*
20781 TTATTTGATTGTTTTGGTATTTGATAAAATAATATTTAGAA
390 TTATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAA
*
20822 -TTTAAATTTAACAATA
1 TTTTAAATTTAATAATA
20838 TTAACCAAAG
Statistics
Matches: 430, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
430 324 0.75
431 106 0.25
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (430 bp):
TTTTAAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACATATTACATTATATAA
ACGATACATATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
TGTCCATACTTTTTATAAAAATGATCGATACTTTGTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTAATAGCGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAAT
TATTTGATTGTTTTGATATTTGATAAAATAATATTTAGAA
Found at i:21004 original size:25 final size:25
Alignment explanation
Indices: 20976--21037 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
20966 ACTCAAAATA
*
20976 TGTATATACCTAAATATGTAGTTAT
1 TGTACATACCTAAATATGTAGTTAT
21001 TGTACATACCTAAATATGTAGTTAT
1 TGTACATACCTAAATATGTAGTTAT
21026 TGTACATACCTA
1 TGTACATACCTA
21038 TTAATGATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.40
Consensus pattern (25 bp):
TGTACATACCTAAATATGTAGTTAT
Found at i:22354 original size:200 final size:200
Alignment explanation
Indices: 21759--22901 Score: 2057
Period size: 200 Copynumber: 5.7 Consensus size: 200
21749 GGCAGGGGAT
21759 ACATTACTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
1 ACATTACTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
21824 TATTACATTACACTTTTGCGTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACAC
66 TATTACATTACACTTTTGCGTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACAC
21889 TTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCATAAATATCGACACAAACTAAAAAAGTG
131 TTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCATAAATATCGACACAAACTAAAAAAGTG
21954 TCGAC
196 TCGAC
21959 ACATTACTTAGACATATTCTCTCAT-AAACCGGT-TACTTGTA-CGGTTAGATTGAAAAATTACA
1 ACATTACTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
*
22021 TATTACATTACA-TTTTGTGTTTCGATGTTTTTGGGATCGACAC-TTTTATATATGGATCGACAC
66 TATTACATTACACTTTTGCGTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACAC
22084 TTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCATAAATATCGACACAAACTAAAAAAGTG
131 TTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCATAAATATCGACACAAACTAAAAAAGTG
22149 TCGAC
196 TCGAC
*
22154 ACATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
1 ACATTACTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
*
22219 TATTACATTACACTTTTGCGTTTCGATATTTTTGGGATCGACACTTTTTATATATGGATCGACAC
66 TATTACATTACACTTTTGCGTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACAC
*
22284 TTTATGGTTGCACCTTGTTTTCCATTCATTCTGGACCATAAATATCGACACAAACTAAAAAAGTG
131 TTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCATAAATATCGACACAAACTAAAAAAGTG
22349 TCGAC
196 TCGAC
*
22354 ACATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
1 ACATTACTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
*
22419 TATTACATTACACTTTTGGGTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACAC
66 TATTACATTACACTTTTGCGTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACAC
* *
22484 TTTATGGTTGCACCCTGTTTTCCATTCATTCTTGACCAAAAATATCGACACAAACTAAAAAAGTG
131 TTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCATAAATATCGACACAAACTAAAAAAGTG
22549 TCGAC
196 TCGAC
* * *
22554 AAATTACTTATACATATTCTCTCATAAAACTGGTATACTTGTACCGGTTAGATTGAAAAATTACA
1 ACATTACTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
* *
22619 TATTACATTATACTTTTGGGTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACAC
66 TATTACATTACACTTTTGCGTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACAC
* *
22684 TTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACAAAAAATATCGACACAAACT-AAAAAGTG
131 TTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCATAAATATCGACACAAACTAAAAAAGTG
22748 TCGAC
196 TCGAC
*
22753 ACATTATTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
1 ACATTACTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
* *
22818 TATTACATTATACTTTTG-GTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGTTCGACA
66 TATTACATTACACTTTTGCG-TTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACA
*
22882 CTTTATAGTTGCACCCTGTT
130 CTTTATGGTTGCACCCTGTT
22902 GCCCATATTG
Statistics
Matches: 914, Mismatches: 23, Indels: 13
0.96 0.02 0.01
Matches are distributed among these distances:
195 114 0.12
196 38 0.04
197 41 0.04
198 42 0.05
199 191 0.21
200 488 0.53
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (200 bp):
ACATTACTTAGACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACA
TATTACATTACACTTTTGCGTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACAC
TTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCATAAATATCGACACAAACTAAAAAAGTG
TCGAC
Found at i:23031 original size:18 final size:18
Alignment explanation
Indices: 23008--23068 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
22998 TCTCATTCAT
*
23008 AATTATATTCACATACAA
1 AATTATAATCACATACAA
**
23026 AATTATAAATCGTATACAA
1 AATTAT-AATCACATACAA
**
23045 AATTATAAATCTTATACAA
1 AATTAT-AATCACATACAA
23064 AATTA
1 AATTA
23069 ACCCTACATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
18 6 0.16
19 32 0.84
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (18 bp):
AATTATAATCACATACAA
Found at i:23044 original size:19 final size:19
Alignment explanation
Indices: 23020--23068 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
23010 TTATATTCAC
23020 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
23039 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
23058 ATACAAAATTA
1 ATACAAAATTA
23069 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:24886 original size:32 final size:32
Alignment explanation
Indices: 24844--24904 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
24834 CTAATATCAC
*
24844 CCCTTAACACCCCAACTTCTTTCACCACTTCA
1 CCCTCAACACCCCAACTTCTTTCACCACTTCA
* *
24876 CCCTCAACACCTCTACTTCTTTCACCACT
1 CCCTCAACACCCCAACTTCTTTCACCACT
24905 CCATCTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.30
Consensus pattern (32 bp):
CCCTCAACACCCCAACTTCTTTCACCACTTCA
Found at i:24963 original size:21 final size:21
Alignment explanation
Indices: 24938--25002 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
24928 CCCCTTATGC
* *
24938 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
24959 CTCTCCAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
* *
24980 CTATCAAGTTTCTTTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
25001 CT
1 CT
25003 TGATTGTCTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.15, C:0.31, G:0.11, T:0.43
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:27263 original size:20 final size:19
Alignment explanation
Indices: 27209--27254 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
27199 CCGGTATCAA
27209 TTTACCGGTTTTATCATTT
1 TTTACCGGTTTTATCATTT
*
27228 TGATACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCAT-TT
27249 TTTACC
1 TTTACC
27255 TGTTATATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.04
20 19 0.83
21 3 0.13
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (19 bp):
TTTACCGGTTTTATCATTT
Found at i:27416 original size:20 final size:20
Alignment explanation
Indices: 27389--27435 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
27379 TCTGATAACG
27389 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
27408 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
27429 TTTTACC
1 TTTTACC
27436 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:27618 original size:20 final size:18
Alignment explanation
Indices: 27573--27632 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 18
27563 CCGGTAGCGC
27573 TTTACCGGTTTTATCATT
1 TTTACCGGTTTTATCATT
*
27591 TCTATACCGGTTTTGTCATAGT
1 T-T-TACCGGTTTTATCAT--T
* *
27613 TTTACCTGTTATATCATT
1 TTTACCGGTTTTATCATT
27631 TT
1 TT
27633 GGATCGACAC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 4 0.12
19 1 0.03
20 26 0.76
21 1 0.03
22 2 0.06
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.53
Consensus pattern (18 bp):
TTTACCGGTTTTATCATT
Found at i:28164 original size:228 final size:228
Alignment explanation
Indices: 27715--28208 Score: 893
Period size: 228 Copynumber: 2.2 Consensus size: 228
27705 ACCTACTTTT
*
27715 ATAAGTATGGACACTTTTATAAAAATGATATATA-TATTTTTTAAAGTTATGTAATTTATGTTTC
1 ATAAGTATGAACACTTTTATAAAAATGATATATACT-TTTTTTAAAGTTATGTAATTTATGTTTC
*
27779 AATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAA
65 AATTTTTTTAATAGTGTTGCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAA
27844 AAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAAC
130 AAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAAC
* *
27909 CAAATATAATAATAAATATGTTTTTCACAGTGAA
195 CAAAGATAATAATAAATATGATTTTCACAGTGAA
*
27943 ATAAGTATGTACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCA
1 ATAAGTATGAACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCA
28008 ATTTTTTTAATAGTGTTGCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAA
66 ATTTTTTTAATAGTGTTGCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC-AA
28073 AAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAAC
130 AAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAAC
28138 CAAAGATAATAATAAATAT-ATTTTCACAGTGAA
195 CAAAGATAATAATAAATATGATTTTCACAGTGAA
* *
28171 ATAAGTATGAACACTTTTATAAAAAGGATAGATACTTT
1 ATAAGTATGAACACTTTTATAAAAATGATATATACTTT
28209 ACAATATAAC
Statistics
Matches: 257, Mismatches: 7, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
228 171 0.67
229 86 0.33
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.45
Consensus pattern (228 bp):
ATAAGTATGAACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCA
ATTTTTTTAATAGTGTTGCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAA
AATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACC
AAAGATAATAATAAATATGATTTTCACAGTGAA
Found at i:29971 original size:7 final size:7
Alignment explanation
Indices: 29961--29990 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
29951 TTATAATTAA
29961 AAATTTT
1 AAATTTT
29968 AAATTTT
1 AAATTTT
29975 AAATTTT
1 AAATTTT
29982 AAATTTT
1 AAATTTT
29989 AA
1 AA
29991 TTTACTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
AAATTTT
Found at i:34306 original size:23 final size:23
Alignment explanation
Indices: 34274--34358 Score: 73
Period size: 23 Copynumber: 3.7 Consensus size: 23
34264 ACAAACAAAC
*
34274 ATAAACGAACATAAATGAATACA
1 ATAAATGAACATAAATGAATACA
* *
34297 ATAAATGAACGTAAATGAATATA
1 ATAAATGAACATAAATGAATACA
*** *
34320 A-ACGAATGAATGCAAATGAACACA
1 ATA--AATGAACATAAATGAATACA
*
34344 ATAAATGAATATAAA
1 ATAAATGAACATAAA
34359 AGAGCTTGCA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.02
23 31 0.62
24 17 0.34
25 1 0.02
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.20
Consensus pattern (23 bp):
ATAAATGAACATAAATGAATACA
Found at i:34468 original size:28 final size:28
Alignment explanation
Indices: 34437--34497 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
34427 CCACATAAAA
34437 TTCATTATTCATTAATATAACTTACAAC
1 TTCATTATTCATTAATATAACTTACAAC
34465 TTCATTATTCATTAATATAACTTACAAC
1 TTCATTATTCATTAATATAACTTACAAC
34493 TTCAT
1 TTCAT
34498 AGTTAAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (28 bp):
TTCATTATTCATTAATATAACTTACAAC
Found at i:34685 original size:14 final size:14
Alignment explanation
Indices: 34654--34737 Score: 62
Period size: 14 Copynumber: 5.6 Consensus size: 14
34644 AACTTACAAA
* **
34654 AACATAAATGAATT
1 AACATAAATAAACG
34668 AACATAAATAAACG
1 AACATAAATAAACG
34682 AACATAAACGAATATACACG
1 AACAT--A--AATA-A-ACG
*
34702 GACATAAATAAACG
1 AACATAAATAAACG
34716 AACATAAATGAAA-G
1 AACATAAAT-AAACG
34730 AACATAAA
1 AACATAAA
34738 CGGACATAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
14 36 0.62
15 4 0.07
16 5 0.09
18 5 0.09
19 1 0.02
20 7 0.12
ACGTcount: A:0.61, C:0.13, G:0.10, T:0.17
Consensus pattern (14 bp):
AACATAAATAAACG
Found at i:35312 original size:25 final size:25
Alignment explanation
Indices: 35274--35333 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
35264 GATCTATAGT
*
35274 GATGATGTGACAGTCCACAGTGACA
1 GATGATGTGGCAGTCCACAGTGACA
35299 GATGATGTGGCAGTCCACAGTGACA
1 GATGATGTGGCAGTCCACAGTGACA
* *
35324 GGTGACGTGG
1 GATGATGTGG
35334 ATAATGATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.27, C:0.18, G:0.35, T:0.20
Consensus pattern (25 bp):
GATGATGTGGCAGTCCACAGTGACA
Found at i:35559 original size:30 final size:30
Alignment explanation
Indices: 35525--35591 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
35515 AATTTAACTC
* * *
35525 GACTC-AACCTGACTTAAATTTTATAAATTT
1 GACTCGAACC-GACTCAAAATTTAGAAATTT
*
35555 GACTCGATCCGACTCAAAATTTAGAAATTT
1 GACTCGAACCGACTCAAAATTTAGAAATTT
35585 GACTCGA
1 GACTCGA
35592 CTAAAAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 29 0.91
31 3 0.09
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (30 bp):
GACTCGAACCGACTCAAAATTTAGAAATTT
Found at i:35560 original size:35 final size:31
Alignment explanation
Indices: 35535--35593 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
35525 GACTCAACCT
* * *
35535 GACTTAAATTTTATAAATTTGACTCGA-TCC
1 GACTCAAAATTTAGAAATTTGACTCGACTCC
35565 GACTCAAAATTTAGAAATTTGACTCGACT
1 GACTCAAAATTTAGAAATTTGACTCGACT
35594 AAAAAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (31 bp):
GACTCAAAATTTAGAAATTTGACTCGACTCC
Found at i:36063 original size:30 final size:30
Alignment explanation
Indices: 36027--36084 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
36017 CCACAGGAGG
* *
36027 GTCCTTAA-AACCCTTTCCTTGTTTTATTGT
1 GTCCTTAATAA-CCTCTCCTTATTTTATTGT
36057 GTCCTTAATAACCTCTCCTTATTTTATT
1 GTCCTTAATAACCTCTCCTTATTTTATT
36085 TAAACTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.19, C:0.24, G:0.07, T:0.50
Consensus pattern (30 bp):
GTCCTTAATAACCTCTCCTTATTTTATTGT
Found at i:41250 original size:24 final size:24
Alignment explanation
Indices: 41201--41253 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
41191 TTATATAAAA
* *
41201 TATAATTTTATTATAATTATATTT
1 TATATTTTTATTATAATTATAATT
*
41225 TATATTTTTATTATAGTT-TAAATT
1 TATATTTTTATTATAATTAT-AATT
41249 TATAT
1 TATAT
41254 GATATTAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
TATATTTTTATTATAATTATAATT
Found at i:46451 original size:24 final size:24
Alignment explanation
Indices: 46424--46475 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
46414 AACGGATATA
*
46424 TCAAAAATCAAAACATAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
** * *
46448 TCAAGTATCATATCAGAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
46472 TCAA
1 TCAA
46476 GTAACAGATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (24 bp):
TCAAAAATCAAAACAGAAATCAGG
Found at i:46476 original size:24 final size:24
Alignment explanation
Indices: 46444--46562 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
46434 AAACATAAAT
*
46444 CAGGTCAAGTATCATATCAGAAAT-
1 CAGGTCAAGTATCAGATCAG-AATC
*
46468 CAGGTCAAGTAACAGATCAGAATC
1 CAGGTCAAGTATCAGATCAGAATC
*
46492 CAAGTCAAGTATCAGATCAGAATC
1 CAGGTCAAGTATCAGATCAGAATC
*
46516 CATGTC-AGATATCAGATCAGAATC
1 CAGGTCAAG-TATCAGATCAGAATC
*
46540 CATGTCAAGTATCAGATCAGAAT
1 CAGGTCAAGTATCAGATCAGAAT
46563 TCAAATCGAA
Statistics
Matches: 87, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
23 5 0.06
24 80 0.92
25 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (24 bp):
CAGGTCAAGTATCAGATCAGAATC
Found at i:51211 original size:14 final size:15
Alignment explanation
Indices: 51159--51324 Score: 84
Period size: 14 Copynumber: 11.3 Consensus size: 15
51149 AAATTAATAG
51159 ATATACTTAATATATTT
1 ATATACTT--TATATTT
* *
51176 AT-TA-TGTATAATTA
1 ATATACTTTAT-ATTT
51190 ATATACTTTATATTT
1 ATATACTTTATATTT
51205 A-ATAC-TTATATTT
1 ATATACTTTATATTT
*
51218 ATATACTTTAATACTT
1 ATATACTTT-ATATTT
*** *
51234 ATAT-CCAAACACTTT
1 ATATACTTTATA-TTT
51249 AT-TACTTTATA-TT
1 ATATACTTTATATTT
51262 ATATACTTTAATACTTT
1 ATATACTTT-ATA-TTT
*
51279 ATAT--TATATATTT
1 ATATACTTTATATTT
* *
51292 -TATACTATATATAT
1 ATATACTTTATATTT
* *
51306 ATATA-TATATATAT
1 ATATACTTTATATTT
51320 ATATA
1 ATATA
51325 TATACATATA
Statistics
Matches: 118, Mismatches: 16, Indels: 33
0.71 0.10 0.20
Matches are distributed among these distances:
12 3 0.03
13 19 0.16
14 47 0.40
15 26 0.22
16 15 0.13
17 8 0.07
ACGTcount: A:0.40, C:0.08, G:0.01, T:0.52
Consensus pattern (15 bp):
ATATACTTTATATTT
Found at i:51215 original size:13 final size:14
Alignment explanation
Indices: 51169--51349 Score: 69
Period size: 14 Copynumber: 12.7 Consensus size: 14
51159 ATATACTTAA
51169 TATATTTAT-TA-T
1 TATATTTATATACT
*
51181 GTATAATTAATATACTT
1 -TAT-ATTTATATAC-T
51198 TATATTTA-ATACT
1 TATATTTATATACT
51211 TATATTTATATACTT
1 TATATTTATATAC-T
* * *
51226 TAATACTTATATCCA
1 T-ATATTTATATACT
* *
51241 AACACTTTAT-TACT
1 TATA-TTTATATACT
51255 T-TATATTATATACTT
1 TATAT-TTATATAC-T
51270 TAATACTTTATAT--T
1 T-ATA-TTTATATACT
51284 ATATATTT-TATAC-
1 -TATATTTATATACT
*
51297 TATATATATATA-T
1 TATATTTATATACT
*
51310 ATATATATATATA-T
1 -TATATTTATATACT
**
51324 ATATACATATATACT
1 -TATATTTATATACT
51339 TATAATTTATA
1 TAT-ATTTATA
51350 GTTTATATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 42
0.69 0.09 0.22
Matches are distributed among these distances:
12 10 0.08
13 24 0.18
14 52 0.40
15 21 0.16
16 13 0.10
17 9 0.07
18 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.01, T:0.52
Consensus pattern (14 bp):
TATATTTATATACT
Found at i:51215 original size:22 final size:23
Alignment explanation
Indices: 51190--51312 Score: 116
Period size: 22 Copynumber: 5.5 Consensus size: 23
51180 TGTATAATTA
51190 ATATACTT-TATA-TTTAATACTT
1 ATATA-TTATATACTTTAATACTT
51212 ATAT-TTATATACTTTAATACTT
1 ATATATTATATACTTTAATACTT
** * * *
51234 ATAT-CCAAACACTTTATTACTT
1 ATATATTATATACTTTAATACTT
51256 -TATATTATATACTTTAATACTT
1 ATATATTATATACTTTAATACTT
*
51278 -TATATTATATA-TTTTATACTAT
1 ATATATTATATACTTTAATACT-T
51300 ATATATATATATA
1 ATATAT-TATATA
51313 TATATATATA
Statistics
Matches: 84, Mismatches: 11, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.02
21 15 0.18
22 56 0.67
23 5 0.06
24 6 0.07
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (23 bp):
ATATATTATATACTTTAATACTT
Found at i:51302 original size:2 final size:2
Alignment explanation
Indices: 51278--51366 Score: 78
Period size: 2 Copynumber: 45.0 Consensus size: 2
51268 TTTAATACTT
*
51278 TA TA T- TA TA TA T- TT TA TA CTA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
* * * *
51319 TA TA TA TA TA CA TA TA TA CT- TA TA -A TT TA TA GTT TA TA TA TG
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA
51361 TA TA TA
1 TA TA TA
51367 AAGTACCAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 14
0.76 0.10 0.15
Matches are distributed among these distances:
1 4 0.06
2 63 0.89
3 4 0.06
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:52443 original size:18 final size:18
Alignment explanation
Indices: 52420--52455 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
52410 GGATAAGTGT
52420 TCACTTTCCTAGTATCCA
1 TCACTTTCCTAGTATCCA
52438 TCACTTTCCTAGTATCCA
1 TCACTTTCCTAGTATCCA
52456 CCAACCACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.33, G:0.06, T:0.39
Consensus pattern (18 bp):
TCACTTTCCTAGTATCCA
Found at i:55168 original size:2 final size:2
Alignment explanation
Indices: 55161--55189 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
55151 TAGAAAAATA
55161 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
55190 CAAAATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57638 original size:46 final size:46
Alignment explanation
Indices: 57577--57669 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
57567 CCATTCTTTG
57577 AGTTGTAAAATTATTATTGACACAACTTTCTCTGAATTATTTAATC
1 AGTTGTAAAATTATTATTGACACAACTTTCTCTGAATTATTTAATC
*
57623 AGTTGTGAAAA-TATTATTGACACAACTTTCTCTGAGTTATTTAATC
1 AGTTGT-AAAATTATTATTGACACAACTTTCTCTGAATTATTTAATC
57669 A
1 A
57670 TTCTCTTTGT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 41 0.91
47 4 0.09
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (46 bp):
AGTTGTAAAATTATTATTGACACAACTTTCTCTGAATTATTTAATC
Found at i:64507 original size:44 final size:44
Alignment explanation
Indices: 64459--64544 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
64449 CAACTCGTAA
*
64459 TTTGCACCT-AAGTGCCACATAATTATCCCGAATGACAACATAGG
1 TTTGCA-CTGAAGTGCCACATAATTATCCCGAAGGACAACATAGG
* * *
64503 TTTGCACTGAAGTGCCACATATTTGTCCCGAAGGACCACATA
1 TTTGCACTGAAGTGCCACATAATTATCCCGAAGGACAACATA
64545 AGACCCTCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (44 bp):
TTTGCACTGAAGTGCCACATAATTATCCCGAAGGACAACATAGG
Found at i:64535 original size:21 final size:22
Alignment explanation
Indices: 64468--64544 Score: 56
Period size: 21 Copynumber: 3.6 Consensus size: 22
64458 ATTTGCACCT
* *
64468 AAGTG-CCACATAATTATCCCG
1 AAGTGACCACATATTTGTCCCG
* *
64489 AA-TGACAACATAGGTTTG-CACTG
1 AAGTGACCACATA--TTTGTC-CCG
64512 AAGTG-CCACATATTTGTCCCG
1 AAGTGACCACATATTTGTCCCG
64533 AAG-GACCACATA
1 AAGTGACCACATA
64545 AGACCCTCGA
Statistics
Matches: 43, Mismatches: 6, Indels: 14
0.68 0.10 0.22
Matches are distributed among these distances:
20 3 0.07
21 24 0.56
22 2 0.05
23 12 0.28
24 2 0.05
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (22 bp):
AAGTGACCACATATTTGTCCCG
Found at i:65262 original size:25 final size:22
Alignment explanation
Indices: 65233--65278 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
65223 TTTTTAACCC
65233 AATCTTAATTCCTAATAAAATAATA
1 AATC-TAA-TCCTAA-AAAATAATA
*
65258 AATCTAATCCTAAAAGATAAT
1 AATCTAATCCTAAAAAATAAT
65279 GCATCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 6 0.30
24 3 0.15
25 4 0.20
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (22 bp):
AATCTAATCCTAAAAAATAATA
Found at i:68948 original size:1 final size:1
Alignment explanation
Indices: 68944--69026 Score: 58
Period size: 1 Copynumber: 83.0 Consensus size: 1
68934 ACTTTTTGGC
* *** * *** * *
68944 TTTTTTTTTTTGTTTTTTTGCCTTTTTTTTTTTGTTTTTTTGCCTTTTTTTTTTGTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
69009 TTTGTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTT
69027 GAAAAAAATA
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 64 1.00
ACGTcount: A:0.00, C:0.05, G:0.10, T:0.86
Consensus pattern (1 bp):
T
Found at i:68954 original size:7 final size:7
Alignment explanation
Indices: 68944--69025 Score: 89
Period size: 7 Copynumber: 11.7 Consensus size: 7
68934 ACTTTTTGGC
68944 TTTTT-T
1 TTTTTGT
68950 TTTTTGTT
1 TTTTTG-T
*
68958 TTTTTGCC
1 TTTTTG-T
68966 TTTTT-T
1 TTTTTGT
68972 TTTTTGTT
1 TTTTTG-T
*
68980 TTTTTGC
1 TTTTTGT
*
68987 CTTTT-T
1 TTTTTGT
68993 TTTTTGT
1 TTTTTGT
69000 TTTTTGT
1 TTTTTGT
69007 TTTTTGT
1 TTTTTGT
69014 TTTTTGT
1 TTTTTGT
69021 TTTTT
1 TTTTT
69026 TGAAAAAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
6 14 0.22
7 31 0.48
8 19 0.30
ACGTcount: A:0.00, C:0.05, G:0.10, T:0.85
Consensus pattern (7 bp):
TTTTTGT
Found at i:68960 original size:21 final size:21
Alignment explanation
Indices: 68936--69025 Score: 119
Period size: 21 Copynumber: 4.2 Consensus size: 21
68926 AAATTTTGAC
68936 TTTTTGGCTTTTTTTTTTTGTT
1 TTTTTGGCTTTTTTTTTTTG-T
*
68958 TTTTTGCCTTTTTTTTTTTGT
1 TTTTTGGCTTTTTTTTTTTGT
* *
68979 TTTTTTGCCTTTTTTTTTTGT
1 TTTTTGGCTTTTTTTTTTTGT
*
69000 TTTTT-GTTTTTTGTTTTTTGT
1 TTTTTGGCTTTTT-TTTTTTGT
69021 TTTTT
1 TTTTT
69026 TGAAAAAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.08
21 37 0.61
22 19 0.31
ACGTcount: A:0.00, C:0.06, G:0.11, T:0.83
Consensus pattern (21 bp):
TTTTTGGCTTTTTTTTTTTGT
Found at i:68961 original size:22 final size:22
Alignment explanation
Indices: 68936--69027 Score: 127
Period size: 22 Copynumber: 4.3 Consensus size: 22
68926 AAATTTTGAC
68936 TTTTTGGCTTTTTTTTTTTGTT
1 TTTTTGGCTTTTTTTTTTTGTT
*
68958 TTTTTGCCTTTTTTTTTTTGTT
1 TTTTTGGCTTTTTTTTTTTGTT
*
68980 TTTTT-GCCTTTTTTTTTTG-T
1 TTTTTGGCTTTTTTTTTTTGTT
*
69000 TTTTT-GTTTTTTGTTTTTTGTT
1 TTTTTGGCTTTTT-TTTTTTGTT
69022 TTTTTG
1 TTTTTG
69028 AAAAAAATAG
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
20 11 0.18
21 19 0.31
22 32 0.52
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.83
Consensus pattern (22 bp):
TTTTTGGCTTTTTTTTTTTGTT
Found at i:68995 original size:42 final size:42
Alignment explanation
Indices: 68936--69027 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
68926 AAATTTTGAC
* *
68936 TTTTTGGCTTTTTTTTTTTGTTTTTTTGCCTTTTT-TTTTTTGT
1 TTTTTTGCCTTTTTTTTTTG-TTTTTTG-CTTTTTGTTTTTTGT
*
68979 TTTTTTGCCTTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTGT
1 TTTTTTGCCTTTTTTTTTTGTTTTTTGCTTTTTGTTTTTTGT
69021 TTTTTTG
1 TTTTTTG
69028 AAAAAAATAG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 5 0.11
42 22 0.49
43 18 0.40
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.83
Consensus pattern (42 bp):
TTTTTTGCCTTTTTTTTTTGTTTTTTGCTTTTTGTTTTTTGT
Found at i:69901 original size:25 final size:22
Alignment explanation
Indices: 69872--69917 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
69862 TTTTTAACCC
69872 AATCTTAATTCCTAATAAAATAATA
1 AATC-TAA-TCCTAA-AAAATAATA
*
69897 AATCTAATCCTAAAAGATAAT
1 AATCTAATCCTAAAAAATAAT
69918 GCATCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 6 0.30
24 3 0.15
25 4 0.20
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (22 bp):
AATCTAATCCTAAAAAATAATA
Found at i:70955 original size:9 final size:9
Alignment explanation
Indices: 70941--70967 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
70931 AAGTATGGGT
70941 AGAAATATC
1 AGAAATATC
70950 AGAAATATC
1 AGAAATATC
70959 AGAAATATC
1 AGAAATATC
70968 CGAGTTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22
Consensus pattern (9 bp):
AGAAATATC
Found at i:71295 original size:21 final size:21
Alignment explanation
Indices: 71235--71286 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
71225 TCATAGGGTC
*
71235 GTTCACATTCACTGATTCAAA
1 GTTCACATTTACTGATTCAAA
71256 GTTCACATTTACTGATTCAAA
1 GTTCACATTTACTGATTCAAA
71277 GTTCACATTT
1 GTTCACATTT
71287 CCATATTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (21 bp):
GTTCACATTTACTGATTCAAA
Found at i:71783 original size:20 final size:19
Alignment explanation
Indices: 71735--71788 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
71725 ATTCGATGTT
71735 TCAAGGGTATCGATACATCC
1 TCAA-GGTATCGATACATCC
*
71755 TCAAAGTATCGATACCATCC
1 TCAAGGTATCGATA-CATCC
**
71775 TTTAGGTATCGATA
1 TCAAGGTATCGATA
71789 TTACCCTTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 9 0.31
20 20 0.69
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (19 bp):
TCAAGGTATCGATACATCC
Found at i:75033 original size:98 final size:98
Alignment explanation
Indices: 74864--75061 Score: 342
Period size: 98 Copynumber: 2.0 Consensus size: 98
74854 GAGTTACTAC
* * * *
74864 TCTCCTCTATCCTATCTCCCACATCACTTTGAGAGCCTTCAAAGTTTGACATTTATTAAGATCAA
1 TCTCCTCCATCCTATCTCCCACATCACTTCGAGAGCCTTCAAAATTCGACATTTATTAAGATCAA
74929 TTACTAAAAGTATTAGCAAGGATAGCATATTGA
66 TTACTAAAAGTATTAGCAAGGATAGCATATTGA
*
74962 TCTCCTCCATCCTATCTCCCGCATCACTTCGAGAGCCTTCAAAATTCGACATTTATTAAGATCAA
1 TCTCCTCCATCCTATCTCCCACATCACTTCGAGAGCCTTCAAAATTCGACATTTATTAAGATCAA
*
75027 TTACTAAAAGTATTAGCAAGGATATCATATTGA
66 TTACTAAAAGTATTAGCAAGGATAGCATATTGA
75060 TC
1 TC
75062 CCTTATCAGA
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (98 bp):
TCTCCTCCATCCTATCTCCCACATCACTTCGAGAGCCTTCAAAATTCGACATTTATTAAGATCAA
TTACTAAAAGTATTAGCAAGGATAGCATATTGA
Found at i:75967 original size:35 final size:35
Alignment explanation
Indices: 75896--75968 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
75886 TCACGAACAA
**
75896 TAAGGTCCTGAGCACACAGCCGAGGAACCGGTAAG
1 TAAGGTCCTGAGCACACAGCCGAGGAACCGCCAAG
* *
75931 TAAGG-CCATGAGCATACAGCCGAGGAACCTCCAAG
1 TAAGGTCC-TGAGCACACAGCCGAGGAACCGCCAAG
75966 TAA
1 TAA
75969 TCTTCCTCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 2 0.06
35 31 0.94
ACGTcount: A:0.34, C:0.26, G:0.27, T:0.12
Consensus pattern (35 bp):
TAAGGTCCTGAGCACACAGCCGAGGAACCGCCAAG
Found at i:76078 original size:24 final size:23
Alignment explanation
Indices: 76050--76136 Score: 113
Period size: 24 Copynumber: 3.7 Consensus size: 23
76040 ATTCAAATCA
*
76050 AGTATCATATCAGAATCCATGTC
1 AGTATCAGATCAGAATCCATGTC
76073 ATGTATCAGATCAGAATCCATGTC
1 A-GTATCAGATCAGAATCCATGTC
* *
76097 AATATCAGATCAGAATCCAGGTC
1 AGTATCAGATCAGAATCCATGTC
76120 AGGTATCATGA-CAGAAT
1 A-GTATCA-GATCAGAAT
76137 TCAAATTTGA
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
23 22 0.39
24 33 0.58
25 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (23 bp):
AGTATCAGATCAGAATCCATGTC
Found at i:77291 original size:18 final size:18
Alignment explanation
Indices: 77270--77305 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
77260 CTGCCATCCG
*
77270 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
77288 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
77306 GTCCTTTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:78644 original size:15 final size:15
Alignment explanation
Indices: 78624--78657 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
78614 GGTCAACGCC
78624 GGTCAACAGTCAACG
1 GGTCAACAGTCAACG
*
78639 GGTCAACGGTCAACG
1 GGTCAACAGTCAACG
78654 GGTC
1 GGTC
78658 GGATCAACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.32, T:0.15
Consensus pattern (15 bp):
GGTCAACAGTCAACG
Found at i:78675 original size:18 final size:18
Alignment explanation
Indices: 78652--78692 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
78642 CAACGGTCAA
78652 CGGGTCGGATCAACAGGT
1 CGGGTCGGATCAACAGGT
* *
78670 CGGGTCGGGTCAACGGGT
1 CGGGTCGGATCAACAGGT
78688 CGGGT
1 CGGGT
78693 AAACGAGTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.22, G:0.46, T:0.17
Consensus pattern (18 bp):
CGGGTCGGATCAACAGGT
Found at i:78684 original size:31 final size:31
Alignment explanation
Indices: 78646--78710 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
78636 ACGGGTCAAC
*
78646 GGTCAACGGGTCGGATCAAC-AGGTCGGGTCG
1 GGTCAACGGGTCGGATAAACGA-GTCGGGTCG
*
78677 GGTCAACGGGTCGGGTAAACGAGTCGGGTCG
1 GGTCAACGGGTCGGATAAACGAGTCGGGTCG
78708 GGT
1 GGT
78711 TATGACCGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.18, C:0.20, G:0.45, T:0.17
Consensus pattern (31 bp):
GGTCAACGGGTCGGATAAACGAGTCGGGTCG
Found at i:78686 original size:13 final size:13
Alignment explanation
Indices: 78670--78706 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
78660 ATCAACAGGT
78670 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
*
78683 CGGGTCGGGTAAA
1 CGGGTCGGGTCAA
*
78696 CGAGTCGGGTC
1 CGGGTCGGGTC
78707 GGGTTATGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.16, C:0.22, G:0.46, T:0.16
Consensus pattern (13 bp):
CGGGTCGGGTCAA
Found at i:80747 original size:35 final size:35
Alignment explanation
Indices: 80676--80748 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
80666 TCACGAACAA
* **
80676 TAAGGTCCTGAGCACACAGCCGAGGAACCGGTAAG
1 TAAGGCCCTGAGCACACAGCCGAGGAACCGCCAAG
*
80711 TAAGGCCCTGAGCACACAGCCGAGGAACCTCCAAG
1 TAAGGCCCTGAGCACACAGCCGAGGAACCGCCAAG
80746 TAA
1 TAA
80749 TCTTCCTCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.29, G:0.27, T:0.11
Consensus pattern (35 bp):
TAAGGCCCTGAGCACACAGCCGAGGAACCGCCAAG
Found at i:80858 original size:24 final size:23
Alignment explanation
Indices: 80830--80916 Score: 111
Period size: 24 Copynumber: 3.7 Consensus size: 23
80820 ATTCAAATCA
*
80830 AGTATCATATCAGAATCCAGGTC
1 AGTATCAGATCAGAATCCAGGTC
*
80853 ATGTATCAGATCAGAATCCATGTC
1 A-GTATCAGATCAGAATCCAGGTC
*
80877 AATATCAGATCAGAATCCAGGTC
1 AGTATCAGATCAGAATCCAGGTC
* *
80900 AGGTATCATAACAGAAT
1 A-GTATCAGATCAGAAT
80917 TTAAATTTGA
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
23 22 0.40
24 33 0.60
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (23 bp):
AGTATCAGATCAGAATCCAGGTC
Found at i:82066 original size:18 final size:18
Alignment explanation
Indices: 82045--82085 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
82035 TTTTCCTGCC
* *
82045 ATTCGATCTTATTATTTA
1 ATTCAATCTTATCATTTA
82063 ATTCAATCTTATCATTTA
1 ATTCAATCTTATCATTTA
*
82081 CTTCA
1 ATTCA
82086 GTCATTTCGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.02, T:0.51
Consensus pattern (18 bp):
ATTCAATCTTATCATTTA
Found at i:83416 original size:8 final size:7
Alignment explanation
Indices: 83395--83429 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
83385 TGGTCAACGC
83395 CGGTCAA
1 CGGTCAA
83402 CGGTCAA
1 CGGTCAA
83409 CGGGTCAA
1 C-GGTCAA
83417 CGGTCAA
1 CGGTCAA
83424 CAGGTC
1 C-GGTC
83430 GGGTCGGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 15 0.58
8 11 0.42
ACGTcount: A:0.26, C:0.29, G:0.31, T:0.14
Consensus pattern (7 bp):
CGGTCAA
Found at i:83416 original size:15 final size:15
Alignment explanation
Indices: 83386--83429 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
83376 GGTCAACAAT
83386 GGTCAACGCCGGTCAAC
1 GGTCAACG--GGTCAAC
83403 GGTCAACGGGTCAAC
1 GGTCAACGGGTCAAC
*
83418 GGTCAACAGGTC
1 GGTCAACGGGTC
83430 GGGTCGGGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 18 0.69
17 8 0.31
ACGTcount: A:0.25, C:0.30, G:0.32, T:0.14
Consensus pattern (15 bp):
GGTCAACGGGTCAAC
Found at i:84807 original size:21 final size:21
Alignment explanation
Indices: 84789--84837 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
84779 CACTGAAGTG
84789 CCACATATTTGTCCCGAAGGA
1 CCACATATTTGTCCCGAAGGA
* * *
84810 CCACATATTTGTCTCAAATGA
1 CCACATATTTGTCCCGAAGGA
84831 CCACATA
1 CCACATA
84838 AGACCCTCGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (21 bp):
CCACATATTTGTCCCGAAGGA
Found at i:85031 original size:21 final size:21
Alignment explanation
Indices: 84972--85022 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
84962 ATAGGGTCTG
*
84972 TTCACATTCACTGATTCAAAA
1 TTCACATTTACTGATTCAAAA
*
84993 TTCACATTTACTGATTCAAAT
1 TTCACATTTACTGATTCAAAA
85014 TTCACATTT
1 TTCACATTT
85023 CCATATTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.41
Consensus pattern (21 bp):
TTCACATTTACTGATTCAAAA
Found at i:85511 original size:20 final size:21
Alignment explanation
Indices: 85488--85553 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 21
85478 TCAATGCCAT
85488 CCTT-CAGGTATCGATACTAC
1 CCTTACAGGTATCGATACTAC
*
85508 CCTTACA-ATATCGATAC--C
1 CCTTACAGGTATCGATACTAC
*
85526 TCTTCAACAGGTATCGATACTAC
1 CCTT--ACAGGTATCGATACTAC
85549 CCTTA
1 CCTTA
85554 ATAACTTCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 11
0.71 0.08 0.22
Matches are distributed among these distances:
18 4 0.11
20 16 0.44
21 12 0.33
23 4 0.11
ACGTcount: A:0.29, C:0.30, G:0.11, T:0.30
Consensus pattern (21 bp):
CCTTACAGGTATCGATACTAC
Found at i:85604 original size:14 final size:14
Alignment explanation
Indices: 85584--85619 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
85574 CTTAAAGTAT
85584 CGGTACTGTTCTAA
1 CGGTACTGTTCTAA
*
85598 TGGTACTGTTCTAA
1 CGGTACTGTTCTAA
85612 CGGTACTG
1 CGGTACTG
85620 ATACTCGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.36
Consensus pattern (14 bp):
CGGTACTGTTCTAA
Found at i:89842 original size:26 final size:26
Alignment explanation
Indices: 89811--89873 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
89801 AATGAACTTC
89811 TAAAATTTTAGGTGAAGTCGAATTTA
1 TAAAATTTTAGGTGAAGTCGAATTTA
89837 TAAAATTTTAGGTGAAGTCGAATTTA
1 TAAAATTTTAGGTGAAGTCGAATTTA
89863 TAAAATTTTAG
1 TAAAATTTTAG
89874 AAAACGAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (26 bp):
TAAAATTTTAGGTGAAGTCGAATTTA
Found at i:90174 original size:38 final size:37
Alignment explanation
Indices: 90090--90331 Score: 219
Period size: 38 Copynumber: 6.4 Consensus size: 37
90080 GTTTTTGAAG
*
90090 ATATATA-ATATAGTTTTCAAAAAT-ATTTTTTGAAAAC
1 ATATATATATATAGTTTTTAAAAATGA--TTTTGAAAAC
90127 ATATA-ATATATAGTTTTTAAAAATGATTTTGAAAAC
1 ATATATATATATAGTTTTTAAAAATGATTTTGAAAAC
* *
90163 ATATA-ATATATAGTTTTTAAAAGACGGTTTTTGAAAAC
1 ATATATATATATAGTTTTTAAAA-A-TGATTTTGAAAAC
*
90201 ATATA-ATATATAGTTTTTAAAAAATGGTTTTTGAAAAC
1 ATATATATATATAGTTTTT-AAAAAT-GATTTTGAAAAC
* * *
90239 GTATATA-ATATAGTTTTGAAAACAT-ATTTTGAATATATATAT
1 ATATATATATATAGTTTTTAAAA-ATGATTTTG---A-A-A-AC
** *
90281 ATATATATATATAGTTTTTAAAACGGTTTTTGAAAAC
1 ATATATATATATAGTTTTTAAAAATGATTTTGAAAAC
90318 ATATATAATATATA
1 ATATAT-ATATATA
90332 TAATTTTAAT
Statistics
Matches: 174, Mismatches: 14, Indels: 33
0.79 0.06 0.15
Matches are distributed among these distances:
36 38 0.22
37 33 0.19
38 67 0.39
39 7 0.04
40 2 0.01
41 1 0.01
42 7 0.04
43 19 0.11
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.43
Consensus pattern (37 bp):
ATATATATATATAGTTTTTAAAAATGATTTTGAAAAC
Found at i:90206 original size:74 final size:76
Alignment explanation
Indices: 90090--90260 Score: 242
Period size: 74 Copynumber: 2.3 Consensus size: 76
90080 GTTTTTGAAG
* ***
90090 ATATATAATATAGTTTTCAAAA-ATATTTTTTGAAAACATATAATATATAGTTTTT-AAAAAT-G
1 ATATATAATATAGTTTTGAAAAGACGGTTTTTGAAAACATATAATATATAGTTTTTAAAAAATGG
90152 ATTTTGAAAAC
66 ATTTTGAAAAC
*
90163 ATATA-ATATATAGTTTTTAAAAGACGGTTTTTGAAAACATATAATATATAGTTTTTAAAAAATG
1 ATATATA-ATATAGTTTTGAAAAGACGGTTTTTGAAAACATATAATATATAGTTTTTAAAAAATG
*
90227 GTTTTTGAAAAC
65 GATTTTGAAAAC
*
90239 GTATATAATATAGTTTTGAAAA
1 ATATATAATATAGTTTTGAAAA
90261 CATATTTTGA
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
72 1 0.01
73 19 0.22
74 30 0.35
75 6 0.07
76 29 0.34
77 1 0.01
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.42
Consensus pattern (76 bp):
ATATATAATATAGTTTTGAAAAGACGGTTTTTGAAAACATATAATATATAGTTTTTAAAAAATGG
ATTTTGAAAAC
Found at i:90351 original size:56 final size:57
Alignment explanation
Indices: 90252--90360 Score: 136
Period size: 56 Copynumber: 1.9 Consensus size: 57
90242 TATAATATAG
* *
90252 TTTTGAAAACATATTTTGAATATATATATATATATATATATAGTTTTT-AAAACGGT
1 TTTTGAAAACATATTATGAATATATATATATATATATACATAGTTTTTGAAAACGGT
*
90308 TTTTGAAAACATA-TAT-AATATATATA-ATTTTAATATTACATAGTTTTTGAAAA
1 TTTTGAAAACATATTATGAATATATATATA-TAT-ATA-TACATAGTTTTTGAAAA
90361 TATAATATAT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
53 1 0.02
54 12 0.26
55 5 0.11
56 24 0.52
57 4 0.09
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.46
Consensus pattern (57 bp):
TTTTGAAAACATATTATGAATATATATATATATATATACATAGTTTTTGAAAACGGT
Found at i:91755 original size:9 final size:9
Alignment explanation
Indices: 91743--91780 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
91733 TAATTTAGAT
91743 TTTATTTTA
1 TTTATTTTA
91752 TTTA-TTTA
1 TTTATTTTA
*
91760 TTTATTTCA
1 TTTATTTTA
*
91769 TTTATTTAA
1 TTTATTTTA
91778 TTT
1 TTT
91781 TACTTCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTATTTTA
Found at i:91757 original size:4 final size:4
Alignment explanation
Indices: 91743--91776 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
91733 TAATTTAGAT
91743 TTTA TTTTA TTTA TTTA TTTA TTTCA TTTA TTTA
1 TTTA -TTTA TTTA TTTA TTTA TTT-A TTTA TTTA
91777 ATTTTACTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:91763 original size:17 final size:17
Alignment explanation
Indices: 91743--91776 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
91733 TAATTTAGAT
*
91743 TTTATTTTATTTATTTA
1 TTTATTTCATTTATTTA
91760 TTTATTTCATTTATTTA
1 TTTATTTCATTTATTTA
91777 ATTTTACTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTATTTCATTTATTTA
Found at i:92900 original size:21 final size:21
Alignment explanation
Indices: 92875--92917 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
92865 GTAGGAATTT
*
92875 TTATTTTTATTTTCATTATTA
1 TTATTTTGATTTTCATTATTA
* *
92896 TTATTTTGATTTTGATTTTTA
1 TTATTTTGATTTTCATTATTA
92917 T
1 T
92918 CTTACTAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (21 bp):
TTATTTTGATTTTCATTATTA
Found at i:95622 original size:24 final size:24
Alignment explanation
Indices: 95595--95716 Score: 136
Period size: 24 Copynumber: 5.1 Consensus size: 24
95585 TCAAGGAGAC
95595 TCATCTTCTACAAAAGCACAAGCT
1 TCATCTTCTACAAAAGCACAAGCT
* * * *
95619 TCATCTGCTTCAAAAACACAAGTT
1 TCATCTTCTACAAAAGCACAAGCT
* * *
95643 TCATCATCTGCAAAAGCACGAGCT
1 TCATCTTCTACAAAAGCACAAGCT
* *
95667 TCATATTCTGCAAAAGCACAAGCT
1 TCATCTTCTACAAAAGCACAAGCT
* **
95691 TCGTCGGCTACAAAAGCACAAGCT
1 TCATCTTCTACAAAAGCACAAGCT
95715 TC
1 TC
95717 TGTAGCTAAC
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 80 1.00
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (24 bp):
TCATCTTCTACAAAAGCACAAGCT
Found at i:110152 original size:23 final size:23
Alignment explanation
Indices: 110121--110186 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
110111 TCTTATATGA
*
110121 CACTACGGTGCATTTCTACGTGG
1 CACTTCGGTGCATTTCTACGTGG
* * *
110144 CACTTCGGTGTAATTCTACATGG
1 CACTTCGGTGCATTTCTACGTGG
* *
110167 CACTTCGGTGCGTTTATACG
1 CACTTCGGTGCATTTCTACG
110187 AGCTGTGGTG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.33
Consensus pattern (23 bp):
CACTTCGGTGCATTTCTACGTGG
Found at i:112334 original size:36 final size:35
Alignment explanation
Indices: 112199--112505 Score: 259
Period size: 38 Copynumber: 8.3 Consensus size: 35
112189 GTTTTTGAAG
* *
112199 ATAT-ATAGTATAGTTTTCGAAAATATTTTTTGAAAAC
1 ATATAATA-TATAGTTTT-TAAAA-ATGTTTTGAAAAC
*
112236 ATATAATATATAGTTTTTAAAAATGTTTTAAAAAC
1 ATATAATATATAGTTTTTAAAAATGTTTTGAAAAC
*
112271 AT-T-ATATAT--TTTTTAAAACGGTTGTTTTGAAAAC
1 ATATAATATATAGTTTTTAAAA---ATGTTTTGAAAAC
* *
112305 ATATAATATATAATTTTTAAAATTGGTTTTGAAAAC
1 ATATAATATATAGTTTTTAAAAAT-GTTTTGAAAAC
* *
112341 ATATAATATATAGTTTTTAAAAGATTTTTATAAAAAAC
1 ATATAATATATAGTTTTTAAAA-ATGTTT-T-GAAAAC
*
112379 ATATAATATATAGTTTTTAAAAAACGATTTTTGAAAAC
1 ATATAATATATAGTTTTT-AAAAATG--TTTTGAAAAC
* * *
112417 GTATGAA-ATATAGTTTTGAAAACATATTTTGAAAAC
1 ATAT-AATATATAGTTTTTAAAA-ATGTTTTGAAAAC
112453 TTATATATATATATAGTTTTT-AAAATGGTTTTTGAAAAC
1 --ATATA-ATATATAGTTTTTAAAAAT-G-TTTTGAAAAC
112492 ATATACAATATATA
1 ATAT--AATATATA
112506 TAATTTTTGA
Statistics
Matches: 226, Mismatches: 19, Indels: 49
0.77 0.06 0.17
Matches are distributed among these distances:
31 9 0.04
33 6 0.03
34 14 0.06
35 16 0.07
36 55 0.24
37 26 0.12
38 69 0.31
39 28 0.12
40 3 0.01
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.43
Consensus pattern (35 bp):
ATATAATATATAGTTTTTAAAAATGTTTTGAAAAC
Found at i:112549 original size:22 final size:22
Alignment explanation
Indices: 112501--112550 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
112491 CATATACAAT
*
112501 ATATATAATTTTTGAAAACTTA
1 ATATATAATTTTTGAAAACTCA
*
112523 TTATATAATTTTTGAAAA-TACA
1 ATATATAATTTTTGAAAACT-CA
112545 ATATAT
1 ATATAT
112551 GTTATATGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (22 bp):
ATATATAATTTTTGAAAACTCA
Found at i:112610 original size:12 final size:11
Alignment explanation
Indices: 112583--112635 Score: 52
Period size: 12 Copynumber: 4.5 Consensus size: 11
112573 TATAGTAGTA
*
112583 TTATATTATATA
1 TTAT-TTATATT
112595 TTATTTATATT
1 TTATTTATATT
112606 GTTATTTATTATT
1 -TTATTTA-TATT
*
112619 TTTTTTATCATT
1 TTATTTAT-ATT
112631 TTATT
1 TTATT
112636 CATTTATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
11 7 0.20
12 24 0.69
13 4 0.11
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (11 bp):
TTATTTATATT
Found at i:112625 original size:24 final size:25
Alignment explanation
Indices: 112598--112644 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
112588 TTATATATTA
*
112598 TTTAT-ATTGTTATTTA-TTATTTTT
1 TTTATCATT-TTATTCATTTATTTTT
112622 TTTATCATTTTATTCATTTATTT
1 TTTATCATTTTATTCATTTATTT
112645 AATTAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.72
Consensus pattern (25 bp):
TTTATCATTTTATTCATTTATTTTT
Found at i:113974 original size:21 final size:23
Alignment explanation
Indices: 113950--114001 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 23
113940 ATTTAATACT
113950 TTTAATTTATATTTT-C-TTTTA
1 TTTAATTTATATTTTACTTTTTA
113971 TTT-ATTTA-ATTTTACTTTTTA
1 TTTAATTTATATTTTACTTTTTA
*
113992 TTTACTTTAT
1 TTTAATTTAT
114002 TCTAACCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 5 0.19
20 6 0.23
21 11 0.42
22 4 0.15
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTAATTTATATTTTACTTTTTA
Found at i:113989 original size:25 final size:26
Alignment explanation
Indices: 113950--114002 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
113940 ATTTAATACT
113950 TTTAATTTATATTTTCT-TTTA-TTTA
1 TTTAATTTATATTTT-TATTTACTTTA
113975 TTTAATTT-TACTTTTTATTTACTTTA
1 TTTAATTTATA-TTTTTATTTACTTTA
114001 TT
1 TT
114003 CTAACCCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 3 0.12
25 16 0.64
26 6 0.24
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.72
Consensus pattern (26 bp):
TTTAATTTATATTTTTATTTACTTTA
Found at i:121080 original size:32 final size:32
Alignment explanation
Indices: 121043--121111 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
121033 GCTGGCCATG
121043 ATTTAAATGTTGAGAATGACTTGTTTTTATTT
1 ATTTAAATGTTGAGAATGACTTGTTTTTATTT
121075 ATTTAAATGTTGAGAATGACTTGTTTTTATTT
1 ATTTAAATGTTGAGAATGACTTGTTTTTATTT
*
121107 TTTTA
1 ATTTA
121112 TTTATTTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.28, C:0.03, G:0.14, T:0.55
Consensus pattern (32 bp):
ATTTAAATGTTGAGAATGACTTGTTTTTATTT
Found at i:122701 original size:59 final size:59
Alignment explanation
Indices: 122635--122760 Score: 209
Period size: 59 Copynumber: 2.1 Consensus size: 59
122625 CAAAACCATT
122635 TAACATTTGAATTTTAAGATAATATTTTAATTATTAT-GATATAACCACAACCACTCATC
1 TAACATTTGAATTTTAAGATAATATTTTAATTATT-TCGATATAACCACAACCACTCATC
* *
122694 TAACATTTGAATTTTAAGATAATATTTTAATTATTTCGATTTAACCACAACCACTCATT
1 TAACATTTGAATTTTAAGATAATATTTTAATTATTTCGATATAACCACAACCACTCATC
*
122753 TAAAATTT
1 TAACATTT
122761 AAAATAAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
58 1 0.02
59 62 0.98
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.41
Consensus pattern (59 bp):
TAACATTTGAATTTTAAGATAATATTTTAATTATTTCGATATAACCACAACCACTCATC
Found at i:122868 original size:31 final size:32
Alignment explanation
Indices: 122802--122868 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 32
122792 CTTTTAACCA
* *
122802 TTAAAATAATAATATATATATATTATATAAAT
1 TTAAAATAATAATATATATATATGAAATAAAT
*
122834 TTAAAA-AATATTAT-TATATATGAAATAAAAT
1 TTAAAATAATAATATATATATATGAAAT-AAAT
122865 TTAA
1 TTAA
122869 GTATAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 10 0.32
31 15 0.48
32 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (32 bp):
TTAAAATAATAATATATATATATGAAATAAAT
Found at i:122894 original size:13 final size:13
Alignment explanation
Indices: 122878--122902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
122868 AGTATAAAAA
122878 ATATAAAAAATAC
1 ATATAAAAAATAC
122891 ATATAAAAAATA
1 ATATAAAAAATA
122903 TAATTATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
ATATAAAAAATAC
Found at i:124167 original size:71 final size:70
Alignment explanation
Indices: 124056--124202 Score: 242
Period size: 71 Copynumber: 2.1 Consensus size: 70
124046 TTATAATCAC
*
124056 ATTAATTTGATAGAAAATGGAAAAAATGATAGTAATAATAATAAAAATAATACATAATGTCAATA
1 ATTAATTTAATAGAAAATGGAAAAAATGATAGTAATAATAATAAAAATAATACATAATGTCAATA
124121 AATAA
66 AATAA
* *
124126 CTTAATTTAATAGAAAAT-GACAAACAATGATAGTAATAATAATAAAAATAATACATAATGTTAA
1 ATTAATTTAATAGAAAATGGA-AAA-AATGATAGTAATAATAATAAAAATAATACATAATGTCAA
124190 TAAATAA
64 TAAATAA
124197 ATTAAT
1 ATTAAT
124203 AAATAAATAA
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
69 2 0.03
70 19 0.27
71 50 0.70
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.30
Consensus pattern (70 bp):
ATTAATTTAATAGAAAATGGAAAAAATGATAGTAATAATAATAAAAATAATACATAATGTCAATA
AATAA
Found at i:124197 original size:4 final size:4
Alignment explanation
Indices: 124188--124219 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
124178 ACATAATGTT
*
124188 AATA AATA AATT AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA
124220 TGCTAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
AATA
Found at i:127310 original size:24 final size:24
Alignment explanation
Indices: 127278--127323 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
127268 TCTTCCTGAT
127278 GATGTATAAAACATCTATGTACAC
1 GATGTATAAAACATCTATGTACAC
127302 GATGTATAAAACATCTATGTAC
1 GATGTATAAAACATCTATGTAC
127324 CATGTCATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.30
Consensus pattern (24 bp):
GATGTATAAAACATCTATGTACAC
Found at i:127916 original size:29 final size:30
Alignment explanation
Indices: 127853--127917 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
127843 CATTCACAAC
* **
127853 TTTTCCAAAATTTCCAAATTGGTCCCTTAA
1 TTTTTCAAAATTTCCAAATTGGTCCCCAAA
*
127883 CTTTTCAAAATTT-CATAA-TGGTCCCCAAA
1 TTTTTCAAAATTTCCA-AATTGGTCCCCAAA
127912 TTTTTC
1 TTTTTC
127918 TAAGGCTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (30 bp):
TTTTTCAAAATTTCCAAATTGGTCCCCAAA
Found at i:128562 original size:22 final size:22
Alignment explanation
Indices: 128526--128580 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
128516 GAAGTCTATC
* *
128526 TTAAATATCACTTTAATGAATT
1 TTAAATTTCATTTTAATGAATT
128548 TTAAATTTCATTTTAATGAATT
1 TTAAATTTCATTTTAATGAATT
128570 TTAAA-TTCATT
1 TTAAATTTCATT
128581 AAATTAGGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 6 0.19
22 25 0.81
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (22 bp):
TTAAATTTCATTTTAATGAATT
Found at i:128667 original size:30 final size:30
Alignment explanation
Indices: 128631--128691 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
128621 AATTACCATT
128631 AAACCAAGACACCTAACCTTATCATCTTCC
1 AAACCAAGACACCTAACCTTATCATCTTCC
128661 AAACCAAGACACCTAACCTTATCATCTTCC
1 AAACCAAGACACCTAACCTTATCATCTTCC
128691 A
1 A
128692 TAAGTCAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.36, G:0.03, T:0.23
Consensus pattern (30 bp):
AAACCAAGACACCTAACCTTATCATCTTCC
Found at i:130456 original size:24 final size:21
Alignment explanation
Indices: 130432--130472 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
130422 TTTAAATATT
*
130432 ATTA-AGGTAGTATCGGTACTC
1 ATTATAGG-AGTATCGATACTC
130453 ATTATAGGAGTATCGATACT
1 ATTATAGGAGTATCGATACT
130473 ACCTGTTCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.34
Consensus pattern (21 bp):
ATTATAGGAGTATCGATACTC
Found at i:147972 original size:24 final size:23
Alignment explanation
Indices: 147943--147991 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
147933 AAACAATCAG
*
147943 GAGCTCGATTGAAGCTCGAGACTC
1 GAGCTCGATTCAAGCTCGA-ACTC
*
147967 GAGCTCGATTCAAGCTTGAACTC
1 GAGCTCGATTCAAGCTCGAACTC
147990 GA
1 GA
147992 TTCAAGCTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (23 bp):
GAGCTCGATTCAAGCTCGAACTC
Found at i:147992 original size:17 final size:17
Alignment explanation
Indices: 147964--148006 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
147954 AAGCTCGAGA
*
147964 CTCGAGCTCGATTCAAG
1 CTCGAACTCGATTCAAG
*
147981 CTTGAACTCGATTCAAG
1 CTCGAACTCGATTCAAG
147998 CTCGAACTC
1 CTCGAACTC
148007 AAACTCGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (17 bp):
CTCGAACTCGATTCAAG
Found at i:150724 original size:11 final size:11
Alignment explanation
Indices: 150710--150770 Score: 56
Period size: 11 Copynumber: 5.7 Consensus size: 11
150700 ATTATAGAAA
150710 TTTTAATATAT
1 TTTTAATATAT
150721 TTTTAA-A-AT
1 TTTTAATATAT
150730 TTTATAAT-TAT
1 TTT-TAATATAT
*** *
150741 CAATAATGTAT
1 TTTTAATATAT
150752 TTTTAATATAT
1 TTTTAATATAT
150763 TTTTAATA
1 TTTTAATA
150771 ATGTAATTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
9 5 0.13
10 8 0.21
11 26 0.67
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (11 bp):
TTTTAATATAT
Found at i:155152 original size:20 final size:20
Alignment explanation
Indices: 155127--155169 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
155117 TAAGTTGAGG
155127 ATTCCCGATGATGAAAGAAA
1 ATTCCCGATGATGAAAGAAA
155147 ATTCCCGATGATGAAAGAAA
1 ATTCCCGATGATGAAAGAAA
155167 ATT
1 ATT
155170 TTTACTGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (20 bp):
ATTCCCGATGATGAAAGAAA
Found at i:165915 original size:42 final size:40
Alignment explanation
Indices: 165868--165956 Score: 117
Period size: 42 Copynumber: 2.2 Consensus size: 40
165858 TTAATGCATT
165868 TAGTATCGATATTGTTCATACAA-TACCAATACTATTCTTCA
1 TAGTATCGATATTGTTC-TACAAGTACCAATACTATTCTT-A
* * *
165909 TCAGTATCGATATTGTTCTTCAAGTATCGATACTATTCTTA
1 T-AGTATCGATATTGTTCTACAAGTACCAATACTATTCTTA
165950 TAGTATC
1 TAGTATC
165957 ATTAGGAGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
40 6 0.14
41 7 0.16
42 30 0.70
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (40 bp):
TAGTATCGATATTGTTCTACAAGTACCAATACTATTCTTA
Found at i:165936 original size:20 final size:20
Alignment explanation
Indices: 165869--165940 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
165859 TAATGCATTT
*
165869 AGTATCGATATTGTTCATACA
1 AGTATCGATATTGTTC-TTCA
* * * *
165890 A-TACCAATACTATTCTTCA
1 AGTATCGATATTGTTCTTCA
165909 TCAGTATCGATATTGTTCTTCA
1 --AGTATCGATATTGTTCTTCA
165931 AGTATCGATA
1 AGTATCGATA
165941 CTATTCTTAT
Statistics
Matches: 39, Mismatches: 9, Indels: 7
0.71 0.16 0.13
Matches are distributed among these distances:
19 3 0.08
20 20 0.51
21 2 0.05
22 14 0.36
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
AGTATCGATATTGTTCTTCA
Found at i:165947 original size:20 final size:21
Alignment explanation
Indices: 165896--165956 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 21
165886 TACAATACCA
165896 ATACTATTCTTCATCAGTATCG
1 ATACTATTCTTCA-CAGTATCG
* *
165918 ATATTGTTCTTCA-AGTATCG
1 ATACTATTCTTCACAGTATCG
*
165938 ATACTATTCTT-ATAGTATC
1 ATACTATTCTTCACAGTATC
165957 ATTAGGAGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 22 0.65
22 11 0.32
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (21 bp):
ATACTATTCTTCACAGTATCG
Found at i:175171 original size:15 final size:15
Alignment explanation
Indices: 175148--175198 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
175138 CGCCCCGCAT
* *
175148 CCGCACCGCATCCAC
1 CCGCCCCGCATCCGC
175163 CCGCCCCGCATCCGC
1 CCGCCCCGCATCCGC
* *
175178 CCTCCCCACATCCGC
1 CCGCCCCGCATCCGC
175193 CCGCCC
1 CCGCCC
175199 AACTAAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.12, C:0.67, G:0.14, T:0.08
Consensus pattern (15 bp):
CCGCCCCGCATCCGC
Found at i:185743 original size:10 final size:10
Alignment explanation
Indices: 185728--185762 Score: 70
Period size: 10 Copynumber: 3.5 Consensus size: 10
185718 TAGATTTATT
185728 CAATCTAATC
1 CAATCTAATC
185738 CAATCTAATC
1 CAATCTAATC
185748 CAATCTAATC
1 CAATCTAATC
185758 CAATC
1 CAATC
185763 AATACAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.40, C:0.31, G:0.00, T:0.29
Consensus pattern (10 bp):
CAATCTAATC
Found at i:189128 original size:44 final size:44
Alignment explanation
Indices: 189080--189185 Score: 167
Period size: 44 Copynumber: 2.4 Consensus size: 44
189070 TATGCATGTA
189080 TCCCGAAGGACATATGTATATCTCCCGAAGGACATGTGTATATG
1 TCCCGAAGGACATATGTATATCTCCCGAAGGACATGTGTATATG
* * *
189124 TCCCGAAGGACATGTGTATATGTCCCGAAGGACCTGTGTATATG
1 TCCCGAAGGACATATGTATATCTCCCGAAGGACATGTGTATATG
* *
189168 TCCCTAAGGACCTATGTA
1 TCCCGAAGGACATATGTA
189186 ACCCTCGACC
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (44 bp):
TCCCGAAGGACATATGTATATCTCCCGAAGGACATGTGTATATG
Found at i:189185 original size:22 final size:22
Alignment explanation
Indices: 189053--189185 Score: 151
Period size: 22 Copynumber: 6.0 Consensus size: 22
189043 GGCATGTGAA
* *
189053 ATATGTCCC-AGAGGACTTATGC
1 ATATGTCCCGA-AGGACATATGT
* *
189075 ATGTATCCCGAAGGACATATGT
1 ATATGTCCCGAAGGACATATGT
* *
189097 ATATCTCCCGAAGGACATGTGT
1 ATATGTCCCGAAGGACATATGT
*
189119 ATATGTCCCGAAGGACATGTGT
1 ATATGTCCCGAAGGACATATGT
* *
189141 ATATGTCCCGAAGGACCTGTGT
1 ATATGTCCCGAAGGACATATGT
* *
189163 ATATGTCCCTAAGGACCTATGT
1 ATATGTCCCGAAGGACATATGT
189185 A
1 A
189186 ACCCTCGACC
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
22 98 0.99
23 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (22 bp):
ATATGTCCCGAAGGACATATGT
Found at i:189661 original size:2 final size:2
Alignment explanation
Indices: 189654--189685 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
189644 CTACACAATC
189654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
189686 CAGCATTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.