Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007938.1 Hibiscus syriacus cultivar Beakdansim tig00110348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2808856
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 14
Found at i:2003055 original size:28 final size:27
Alignment explanation
Indices: 2003018--2003070 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
2003008 ATATAATTTG
*
2003018 TTGCTTGACTCGTTGCTAGTTAAAAATT
1 TTGCTCGACTCGTT-CTAGTTAAAAATT
* *
2003046 TTGCTCGACTTGTTCTTGTTAAAAA
1 TTGCTCGACTCGTTCTAGTTAAAAA
2003071 AATTTGTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.43
Consensus pattern (27 bp):
TTGCTCGACTCGTTCTAGTTAAAAATT
Found at i:2003364 original size:44 final size:44
Alignment explanation
Indices: 2003315--2003398 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
2003305 ATAATGATTA
2003315 ATTAGTAATTTAAT-ATATTTAATTATCTATTAGAAAATTAATAG
1 ATTAGTAATTT-ATCATATTTAATTATCTATTAGAAAATTAATAG
* * *
2003359 ATTAGTAATTTATCATTTTTTATTATCTATTAGTAAATTA
1 ATTAGTAATTTATCATATTTAATTATCTATTAGAAAATTA
2003399 GTAATTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (44 bp):
ATTAGTAATTTATCATATTTAATTATCTATTAGAAAATTAATAG
Found at i:2003549 original size:22 final size:20
Alignment explanation
Indices: 2003524--2003564 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
2003514 TTAAGGTCTT
*
2003524 GAGTCAAGCTCGAGTTCGAATC
1 GAGTCAA-CCCGAGTT-GAATC
2003546 GAGTCAACCCGAGTTGAAT
1 GAGTCAACCCGAGTTGAAT
2003565 TTTTATCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 7 0.39
22 7 0.39
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (20 bp):
GAGTCAACCCGAGTTGAATC
Found at i:2011597 original size:37 final size:36
Alignment explanation
Indices: 2011538--2011657 Score: 172
Period size: 35 Copynumber: 3.3 Consensus size: 36
2011528 ATCCCATTAT
* *
2011538 CATTTTTC-AACAAACATCTACCAAACTTTGAAAAA
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAA
*
2011573 CTATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 C-ATTTTTCAAAGAAACATTTACCAAACTTTGAAAAA
*
2011610 CA-TTTTCAAAGAAACATTTACCAAACTTTGAAAAT
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAA
2011645 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
2011658 TTGGTTATCA
Statistics
Matches: 77, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
35 35 0.45
36 8 0.10
37 34 0.44
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (36 bp):
CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAA
Found at i:2011613 original size:21 final size:20
Alignment explanation
Indices: 2011586--2011649 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
2011576 TTTTTCAAAG
2011586 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
*
2011606 AAACCATTT-TCAAA----G-
1 AAA-CATTTACCAAACTTTGA
2011621 AAACATTTACCAAACTTTGA
1 AAACATTTACCAAACTTTGA
2011641 AAATCATTT
1 AAA-CATTT
2011650 TTTCAAAGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
14 5 0.15
15 7 0.21
16 1 0.03
19 1 0.03
20 10 0.29
21 10 0.29
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (20 bp):
AAACATTTACCAAACTTTGA
Found at i:2015746 original size:16 final size:16
Alignment explanation
Indices: 2015722--2015755 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
2015712 TATCGCCGAC
*
2015722 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
2015738 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
2015754 CG
1 CG
2015756 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:2016225 original size:37 final size:36
Alignment explanation
Indices: 2016166--2016285 Score: 181
Period size: 35 Copynumber: 3.3 Consensus size: 36
2016156 ATCCCATTAT
* *
2016166 CATTTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTG-AAAAC
*
2016202 TATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
2016238 CA-TTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
2016273 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
2016286 TTGGTTATCA
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
35 35 0.45
36 13 0.17
37 29 0.38
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (36 bp):
CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
Found at i:2016241 original size:21 final size:21
Alignment explanation
Indices: 2016217--2016277 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
2016207 TTCAAAGAAA
2016217 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
2016238 CATTT-TCAAA----G-AAA-
1 CATTTACCAAACTTTGAAAAC
2016252 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
2016273 CATTT
1 CATTT
2016278 TTTCAAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 7 0.23
16 1 0.03
19 1 0.03
20 7 0.23
21 10 0.32
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:2021004 original size:21 final size:21
Alignment explanation
Indices: 2020953--2021004 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
2020943 ATTATGACTA
2020953 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
** *
2020974 TCGCGTTGCGGTTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
2020995 TCGCAATGCG
1 TCGCAATGCG
2021005 TCGCAATGCG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:2021048 original size:21 final size:21
Alignment explanation
Indices: 2021005--2021161 Score: 280
Period size: 21 Copynumber: 7.5 Consensus size: 21
2020995 TCGCAATGCG
** *
2021005 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTTGGAAAA
2021025 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
2021046 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
2021067 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
2021088 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
2021109 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
2021130 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
2021151 TCGCAATGCGA
1 TCGCAATGCGA
2021162 TACTGATTAT
Statistics
Matches: 133, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
20 12 0.09
21 121 0.91
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTTGGAAAA
Found at i:2021175 original size:20 final size:20
Alignment explanation
Indices: 2021150--2021203 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
2021140 AATTTGGAAA
*
2021150 ATCGCAATGCGATACTGATT
1 ATCGCAACGCGATACTGATT
2021170 ATCGCAACGCGATACTGATT
1 ATCGCAACGCGATACTGATT
2021190 ATCGCAACGCGATA
1 ATCGCAACGCGATA
2021204 ATACAAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGATT
Found at i:2021540 original size:20 final size:20
Alignment explanation
Indices: 2021515--2021570 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
2021505 TAACGGGGAA
2021515 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* *
2021535 ATCGCAACACGAAAATGGCT
1 ATCGCAACGCGAAAATGACT
*
2021555 ATCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
2021571 CGCAATGCGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.43, C:0.23, G:0.20, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:2021632 original size:19 final size:19
Alignment explanation
Indices: 2021608--2021653 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
2021598 GATTTTTTCG
2021608 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
2021627 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
2021646 TTGCGATT
1 TTGCGATT
2021654 CTCTCGTTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.48
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:2023287 original size:42 final size:42
Alignment explanation
Indices: 2023241--2023333 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
2023231 CCTCTTCAAC
* * *
2023241 GATGACAGTGGCCTCTTGAACGGTGGGGGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGGGGACTCTTGAGG
* *
2023283 GATGATAGGGGCCTCTTGAACGATTGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGGGGACTCTTGAGG
2023325 GATGACAGG
1 GATGACAGG
2023334 TGAGTCGGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.20, C:0.15, G:0.43, T:0.22
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATGGGAGGGGACTCTTGAGG
Found at i:2023293 original size:21 final size:21
Alignment explanation
Indices: 2023269--2023329 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
2023259 AACGGTGGGG
*
2023269 GGGGACTCTTGAGGGATGATA
1 GGGGACTCTTGAGGGATGAGA
* **
2023290 GGGGCCTCTTGAACGATTG-GA
1 GGGGACTCTTGAGGGA-TGAGA
2023311 GGGGACTCTTGAGGGATGA
1 GGGGACTCTTGAGGGATGA
2023330 CAGGTGAGTC
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.21, C:0.13, G:0.43, T:0.23
Consensus pattern (21 bp):
GGGGACTCTTGAGGGATGAGA
Found at i:2023710 original size:20 final size:20
Alignment explanation
Indices: 2023672--2023750 Score: 86
Period size: 20 Copynumber: 4.0 Consensus size: 20
2023662 GAAGAATAGT
* *
2023672 TTACTTTCGCAACACGAAAC
1 TTACTTTCGCAACGCGAAAA
*
2023692 TTACTTTCGCAACGTGAAAA
1 TTACTTTCGCAACGCGAAAA
* *
2023712 TGACTATCGCAACGCGAAAA
1 TTACTTTCGCAACGCGAAAA
** *
2023732 TGGCTATCGCAACGCGAAA
1 TTACTTTCGCAACGCGAAA
2023751 TGAAAATCGC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (20 bp):
TTACTTTCGCAACGCGAAAA
Found at i:2023759 original size:19 final size:19
Alignment explanation
Indices: 2023698--2023816 Score: 104
Period size: 19 Copynumber: 6.4 Consensus size: 19
2023688 AAACTTACTT
* **
2023698 TCGCAACGTGAAAATGACTA
1 TCGCAACGCG-AAATGAAAA
***
2023718 TCGCAACGCGAAAATGGCTA
1 TCGCAACGCG-AAATGAAAA
2023738 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
2023757 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
2023776 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
*
2023790 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
2023809 TCGCAACG
1 TCGCAACG
2023817 ACAAAATCGA
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
14 10 0.12
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 41 0.48
20 28 0.33
ACGTcount: A:0.43, C:0.22, G:0.21, T:0.14
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:2023791 original size:14 final size:14
Alignment explanation
Indices: 2023772--2023835 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 14
2023762 ATGCGAAATG
2023772 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
2023786 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
2023805 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
2023819 AAAATCGAAACG-C
1 AAAATCGCAACGAC
2023832 AAAA
1 AAAA
2023836 CACAAATCGC
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
13 5 0.12
14 21 0.50
15 1 0.02
16 2 0.05
17 2 0.05
18 1 0.02
19 10 0.24
ACGTcount: A:0.53, C:0.22, G:0.16, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:2023795 original size:33 final size:33
Alignment explanation
Indices: 2023753--2023825 Score: 146
Period size: 33 Copynumber: 2.2 Consensus size: 33
2023743 ACGCGAAATG
2023753 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
2023786 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
2023819 AAAATCG
1 AAAATCG
2023826 AAACGCAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.49, C:0.21, G:0.18, T:0.12
Consensus pattern (33 bp):
AAAATCGCAATGCGAAATGAAAATCGCAACGAC
Found at i:2023833 original size:52 final size:52
Alignment explanation
Indices: 2023737--2023852 Score: 139
Period size: 52 Copynumber: 2.2 Consensus size: 52
2023727 GAAAATGGCT
* * * *
2023737 ATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGACA-AA
1 ATCGCAATGCGAAATGAAAATCGCAACGCAAAATGAAAATCGCAA-AACACAA
2023789 ATCGCAATGCGAAATGAAAATCGCAACGACAAAATCG-AAA-CGCAAAACACAA
1 ATCGCAATGCGAAATGAAAATCGCAACG-CAAAAT-GAAAATCGCAAAACACAA
*
2023841 ATCGCATTGCGA
1 ATCGCAATGCGA
2023853 TTTTCATTTC
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
51 3 0.05
52 44 0.79
53 8 0.14
54 1 0.02
ACGTcount: A:0.47, C:0.22, G:0.18, T:0.12
Consensus pattern (52 bp):
ATCGCAATGCGAAATGAAAATCGCAACGCAAAATGAAAATCGCAAAACACAA
Found at i:2023843 original size:33 final size:33
Alignment explanation
Indices: 2023753--2023846 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
2023743 ACGCGAAATG
* * **
2023753 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
1 AAAATCGAAACGCGAAAACAAAATCGCAACGAC
* * **
2023786 AAAATCGCAATGCGAAATGAAAATCGCAACGAC
1 AAAATCGAAACGCGAAAACAAAATCGCAACGAC
2023819 AAAATCGAAACGC-AAAACACAAATCGCA
1 AAAATCGAAACGCGAAAACA-AAATCGCA
2023847 TTGCGATTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
32 4 0.07
33 52 0.93
ACGTcount: A:0.51, C:0.22, G:0.16, T:0.11
Consensus pattern (33 bp):
AAAATCGAAACGCGAAAACAAAATCGCAACGAC
Found at i:2023866 original size:19 final size:19
Alignment explanation
Indices: 2023842--2023971 Score: 110
Period size: 19 Copynumber: 7.6 Consensus size: 19
2023832 AAAACACAAA
2023842 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
2023861 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
*
2023877 TCG--TTTCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
2023894 TCGCATTACGA-TTT--TG
1 TCGCATTGCGATTTTCATT
2023910 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
2023927 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
2023943 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
2023960 TCGCATTGCGAT
1 TCGCATTGCGAT
2023972 AGCCATTTCC
Statistics
Matches: 87, Mismatches: 9, Indels: 30
0.69 0.07 0.24
Matches are distributed among these distances:
14 16 0.18
15 9 0.10
16 12 0.14
17 12 0.14
18 9 0.10
19 29 0.33
ACGTcount: A:0.14, C:0.19, G:0.19, T:0.48
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:2023892 original size:33 final size:33
Alignment explanation
Indices: 2023847--2023971 Score: 232
Period size: 33 Copynumber: 3.8 Consensus size: 33
2023837 ACAAATCGCA
2023847 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
* *
2023880 TTTCGATTTTCATTTCGCATTACGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
2023913 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
2023946 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
2023972 AGCCATTTCC
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.14, C:0.18, G:0.19, T:0.49
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:2023921 original size:14 final size:14
Alignment explanation
Indices: 2023902--2023955 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
2023892 TTTCGCATTA
2023902 CGATTTTGTCGTTG
1 CGATTTTGTCGTTG
*
2023916 CGATTTTCATTTCGCATTG
1 CGA-TTT--TGTCG--TTG
2023935 CGATTTTGTCGTTG
1 CGATTTTGTCGTTG
2023949 CGATTTT
1 CGATTTT
2023956 CATTTCGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 13 0.39
15 3 0.09
16 4 0.12
17 4 0.12
18 3 0.09
19 6 0.18
ACGTcount: A:0.11, C:0.17, G:0.22, T:0.50
Consensus pattern (14 bp):
CGATTTTGTCGTTG
Found at i:2023990 original size:20 final size:19
Alignment explanation
Indices: 2023956--2024010 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
2023946 TTGCGATTTT
*
2023956 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
2023975 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
2023995 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
2024011 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:2024580 original size:18 final size:18
Alignment explanation
Indices: 2024533--2024580 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
2024523 CAGGTCGATC
* *
2024533 AGGTGATGGCCCTGGGTG
1 AGGTGATGGCTCTGAGTG
*
2024551 AGGTGATAGCTCTGAGTG
1 AGGTGATGGCTCTGAGTG
2024569 AGGTGATGGCTC
1 AGGTGATGGCTC
2024581 CCGAAGTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.17, C:0.15, G:0.44, T:0.25
Consensus pattern (18 bp):
AGGTGATGGCTCTGAGTG
Found at i:2025924 original size:20 final size:20
Alignment explanation
Indices: 2025899--2025956 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
2025889 AATAGTTTCT
2025899 GAAAATGACAATCGCAACAC
1 GAAAATGACAATCGCAACAC
2025919 GAAAATGACAATCGCAACAC
1 GAAAATGACAATCGCAACAC
** *
2025939 GAATTTGACTATCGCAAC
1 GAAAATGACAATCGCAAC
2025957 GAGAGAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.45, C:0.24, G:0.16, T:0.16
Consensus pattern (20 bp):
GAAAATGACAATCGCAACAC
Found at i:2026480 original size:20 final size:20
Alignment explanation
Indices: 2026457--2026522 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
2026447 TATTATCTCA
2026457 TTGCGAAAGTCAGTATCGCG
1 TTGCGAAAGTCAGTATCGCG
*
2026477 TTGCGAAAGTAAGTATCGCG
1 TTGCGAAAGTCAGTATCGCG
*
2026497 TTGCGAAAGTCAGTATTGCG
1 TTGCGAAAGTCAGTATCGCG
2026517 TTGCGA
1 TTGCGA
2026523 TTTTGTATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (20 bp):
TTGCGAAAGTCAGTATCGCG
Found at i:2026626 original size:21 final size:22
Alignment explanation
Indices: 2026574--2026626 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
2026564 ATTTACTTAT
2026574 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
* **
2026595 TTGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
2026616 TCGCATTGCGA
1 TCGCATTGCGA
2026627 TAGTCATAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:2026841 original size:2 final size:2
Alignment explanation
Indices: 2026836--2026860 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2026826 GAAAAAATAA
2026836 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2026861 AAAGTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2026944 original size:30 final size:30
Alignment explanation
Indices: 2026905--2026961 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2026895 ATATAAAAAA
2026905 TAAATAAATAAAAAGAA-ATGAAAAAATGT
1 TAAATAAATAAAAAGAATATGAAAAAATGT
*
2026934 TAAATGAAATAAAAATAATATGAAAAAA
1 TAAAT-AAATAAAAAGAATATGAAAAAA
2026962 ATAAAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 5 0.20
30 11 0.44
31 9 0.36
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (30 bp):
TAAATAAATAAAAAGAATATGAAAAAATGT
Found at i:2026966 original size:29 final size:27
Alignment explanation
Indices: 2026899--2026971 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 27
2026889 AAAGGGATAT
2026899 AAAAAATAAATAAATAAAAAGAAATGA
1 AAAAAATAAATAAATAAAAAGAAATGA
* *
2026926 AAAAATGTTAAATGAAATAAAAATAATATGA
1 AAAAA--ATAAAT-AAATAAAAAGAA-ATGA
2026957 AAAAAATAAAATAAA
1 AAAAAAT-AAATAAA
2026972 ATTTAGAGGG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
27 5 0.13
29 9 0.24
30 15 0.39
31 9 0.24
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (27 bp):
AAAAAATAAATAAATAAAAAGAAATGA
Found at i:2028365 original size:3 final size:3
Alignment explanation
Indices: 2028359--2028395 Score: 56
Period size: 3 Copynumber: 11.7 Consensus size: 3
2028349 AAACAAAAAA
2028359 AAT AAT AAGT AAT AAAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AA-T AAT -AAT AAT AAT AAT AAT AAT AAT AA
2028396 ATATAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 26 0.81
4 6 0.19
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:2028479 original size:41 final size:41
Alignment explanation
Indices: 2028434--2028511 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
2028424 AAACTATATA
*
2028434 ATATAAATTTT-TAAAATATTTTTTTAAAAACTATATATTAT
1 ATATAAATTTTCAAAAATA-TTTTTTAAAAACTATATATTAT
2028475 ATATAAATTTTCAAAAATATTTTTTAAAAACTATATA
1 ATATAAATTTTCAAAAATATTTTTTAAAAACTATATA
2028512 ATTTTCAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
41 29 0.83
42 6 0.17
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (41 bp):
ATATAAATTTTCAAAAATATTTTTTAAAAACTATATATTAT
Found at i:2028540 original size:30 final size:31
Alignment explanation
Indices: 2028473--2028541 Score: 104
Period size: 30 Copynumber: 2.2 Consensus size: 31
2028463 ACTATATATT
*
2028473 ATATATAAATTTTCAAAAATATTTTTTAAAAA
1 ATATAT-AATTTTCAAAAATATTTTTCAAAAA
*
2028505 CTATATAATTTTCAAAAATA-TTTTCAAAAA
1 ATATATAATTTTCAAAAATATTTTTCAAAAA
2028535 ATATATA
1 ATATATA
2028542 TTATATAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 15 0.44
31 14 0.41
32 5 0.15
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (31 bp):
ATATATAATTTTCAAAAATATTTTTCAAAAA
Found at i:2028695 original size:73 final size:73
Alignment explanation
Indices: 2028422--2028734 Score: 265
Period size: 73 Copynumber: 4.3 Consensus size: 73
2028412 TTTTTGTAAA
* * * **
2028422 AAAAACTATATAATATA-AATTTTTAAAATATTTTTTTAAAAA-CTATATATTATATATAAATTT
1 AAAAACTATATATTATATAGTTTTCAAAA-ATGATTTTAAAAATC-ATATA-T-TATATAAATTT
2028485 TCAAAAATATTTTTT
62 TC-AAAATA--TTTT
*
2028500 AAAAAC----TA-TATA-A-TTTTCAAAAAT-ATTTTCAAAAAAT-ATATATTATATAAGTTTTC
1 AAAAACTATATATTATATAGTTTTCAAAAATGATTTT--AAAAATCATATATTATATAAATTTTC
*
2028556 AAAAATGTTTT
64 -AAAATATTTT
***
2028567 CAAAAACTATATATTATATAAGTTTTCAAAAATGATTTTAAAAA-CTATATATTATATTTTTTTT
1 -AAAAACTATATATTATAT-AGTTTTCAAAAATGATTTTAAAAATC-ATATATTATATAAATTTT
2028631 CTAAAATATTTT
63 C-AAAATATTTT
** *
2028643 AAAAACTATATATTATATAGTTTTCAAATGTG-TTTTAAAAATCATATATTATATACATTTTCAA
1 AAAAACTATATATTATATAGTTTTCAAAAATGATTTTAAAAATCATATATTATATAAATTTTCAA
*
2028707 AATGTTTTT
66 AAT-ATTTT
*
2028716 AGAAACTATATATTATATA
1 AAAAACTATATATTATATA
2028735 CGTATTTTCA
Statistics
Matches: 202, Mismatches: 16, Indels: 39
0.79 0.06 0.15
Matches are distributed among these distances:
67 4 0.02
68 6 0.03
69 18 0.09
70 5 0.02
71 7 0.03
72 20 0.10
73 56 0.28
74 15 0.07
75 24 0.12
76 36 0.18
77 5 0.02
78 6 0.03
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (73 bp):
AAAAACTATATATTATATAGTTTTCAAAAATGATTTTAAAAATCATATATTATATAAATTTTCAA
AATATTTT
Found at i:2028735 original size:37 final size:37
Alignment explanation
Indices: 2028422--2028734 Score: 301
Period size: 38 Copynumber: 8.5 Consensus size: 37
2028412 TTTTTGTAAA
* * *
2028422 AAAAACTATATAATATA-AATTTTTAAAATATTTTTTT
1 AAAAACTATATATTATATAATTTTCAAAA-ATGTTTTT
*
2028459 AAAAACTATATATTATATATAAATTTTCAAAAATATTTTTT
1 AAAAACTATATA-T-TATAT-AATTTTCAAAAAT-GTTTTT
* *
2028500 AAAAAC-------TATATAATTTTCAAAAATATTTTC
1 AAAAACTATATATTATATAATTTTCAAAAATGTTTTT
* *
2028530 AAAAAATATATATTATATAAGTTTTCAAAAATGTTTTC
1 AAAAACTATATATTATATAA-TTTTCAAAAATGTTTTT
*
2028568 AAAAACTATATATTATATAAGTTTTCAAAAATGATTTT
1 AAAAACTATATATTATATAA-TTTTCAAAAATGTTTTT
** * *
2028606 AAAAACTATATATTATATTTTTTTTCTAAAAT-ATTTT
1 AAAAACTATATATTATA-TAATTTTCAAAAATGTTTTT
*
2028643 AAAAACTATATATTATATAGTTTTC--AAATGTGTTTT
1 AAAAACTATATATTATATAATTTTCAAAAATGT-TTTT
2028679 AAAAA-TCATATATTATATACATTTTC-AAAATGTTTTT
1 AAAAACT-ATATATTATATA-ATTTTCAAAAATGTTTTT
*
2028716 AGAAACTATATATTATATA
1 AAAAACTATATATTATATA
2028735 CGTATTTTCA
Statistics
Matches: 239, Mismatches: 17, Indels: 40
0.81 0.06 0.14
Matches are distributed among these distances:
30 9 0.04
31 13 0.05
32 5 0.02
34 4 0.02
35 1 0.00
36 27 0.11
37 66 0.28
38 85 0.36
39 5 0.02
40 2 0.01
41 22 0.09
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (37 bp):
AAAAACTATATATTATATAATTTTCAAAAATGTTTTT
Found at i:2028763 original size:73 final size:71
Alignment explanation
Indices: 2028455--2028770 Score: 252
Period size: 73 Copynumber: 4.3 Consensus size: 71
2028445 TAAAATATTT
* *
2028455 TTTTAAAAACTATATATTATATATAAATTTTCAAAAATATTTTTTAAAAACTATATA--AT-T--
1 TTTTAAAAATTATATA-T-TATAT-AATTTTCAAAAAT-GTTTTTAAAAACTATATATTATATAG
*** *
2028515 TTCAAAAATA
62 TTTTCAAATG
* *
2028525 TTTTCAAAAAATATATATTATATAAGTTTTCAAAAATGTTTTCAAAAACTATATATTATATAAGT
1 TTTT-AAAAATTATATATTATATAA-TTTTCAAAAATGTTTTTAAAAACTATATATTATAT-AGT
2028590 TTTCAAAAATG
63 TTTC--AAATG
* ** * *
2028601 ATTTTAAAAACTATATATTATATTTTTTTTCTAAAAT-ATTTTAAAAACTATATATTATATAGTT
1 -TTTTAAAAATTATATATTATA-TAATTTTCAAAAATGTTTTTAAAAACTATATATTATATAGTT
2028665 TTCAAATGTG
64 TTCAAA--TG
* *
2028675 TTTTAAAAATCATATATTATATACATTTTC-AAAATGTTTTTAGAAACTATATATTATATACGTA
1 TTTTAAAAATTATATATTATATA-ATTTTCAAAAATGTTTTTAAAAACTATATATTATATA-G--
*
2028739 TTTTCAAACG
62 TTTTCAAATG
** *
2028749 -TTTGCAAATTATATAATATATA
1 TTTTAAAAATTATATATTATATA
2028771 TATATATATA
Statistics
Matches: 203, Mismatches: 24, Indels: 35
0.77 0.09 0.13
Matches are distributed among these distances:
68 18 0.09
69 16 0.08
70 7 0.03
71 12 0.06
72 9 0.04
73 64 0.32
74 13 0.06
75 21 0.10
76 38 0.19
77 5 0.02
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (71 bp):
TTTTAAAAATTATATATTATATAATTTTCAAAAATGTTTTTAAAAACTATATATTATATAGTTTT
CAAATG
Found at i:2029606 original size:118 final size:120
Alignment explanation
Indices: 2029417--2029654 Score: 444
Period size: 118 Copynumber: 2.0 Consensus size: 120
2029407 TACGTGCTGC
2029417 GGCATTTTTTTTATAGAATTCCTCGTTTGTATTGTATTACTTCATCATGATAGTCTAGAACTGAT
1 GGCATTTTTTTTATAGAATTCCTCGTTTGTATTGTATTACTTCATCATGATAGTCTAGAACTGAT
2029482 ATCAAATAGTTTATGTTATATTTTCATTAATATTATGCAATGTGTATCAACAAGT
66 ATCAAATAGTTTATGTTATATTTTCATTAATATTATGCAATGTGTATCAACAAGT
* *
2029537 GGCA-TTTTTTT-TAGAATTCCTCGTTTGTATTGTATTACTTCTTCTTGATAGTCTAGAACTGAT
1 GGCATTTTTTTTATAGAATTCCTCGTTTGTATTGTATTACTTCATCATGATAGTCTAGAACTGAT
2029600 ATCAAATAGTTTATGTTATATTTTCATTAATATTATGCAATGTGTATCAACAAGT
66 ATCAAATAGTTTATGTTATATTTTCATTAATATTATGCAATGTGTATCAACAAGT
2029655 AGAAACTAAA
Statistics
Matches: 116, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
118 105 0.91
119 7 0.06
120 4 0.03
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (120 bp):
GGCATTTTTTTTATAGAATTCCTCGTTTGTATTGTATTACTTCATCATGATAGTCTAGAACTGAT
ATCAAATAGTTTATGTTATATTTTCATTAATATTATGCAATGTGTATCAACAAGT
Found at i:2031224 original size:19 final size:19
Alignment explanation
Indices: 2031198--2031247 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
2031188 CCTACTGGAA
*
2031198 TCCAAGGGATATATCCTTT
1 TCCAAGGGATAGATCCTTT
* *
2031217 TTCAAGGGGATCGATCCTTT
1 TCCAA-GGGATAGATCCTTT
2031237 TCCTAAGGGAT
1 TCC-AAGGGAT
2031248 CAATCTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 4 0.16
20 19 0.76
21 2 0.08
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (19 bp):
TCCAAGGGATAGATCCTTT
Found at i:2032569 original size:106 final size:104
Alignment explanation
Indices: 2032396--2032877 Score: 424
Period size: 106 Copynumber: 4.6 Consensus size: 104
2032386 GACCATCTAG
* * * * *
2032396 TCGACACTATTATCAATATAAATTGTGATGAACTTATTCGACACTGAAAACATATTTTGTGACCA
1 TCGACACTATTATCAATAGAAATTGTGATGAATTTGTTTGACACTGAAAATATATTTTGTGACCA
*
2032461 TCAATGTTGTCACTCTAAGTATATATTTAATGACCAAATGT
66 TCAATGTTGTCACACTAAGTAT-T-TTTAATGACCAAATGT
* * * * * *
2032502 TCGACACAATTTTCAATGGAAATTTTGATGAATTTGTTTGACATTGAAGATATATTTTGTGACCA
1 TCGACACTATTATCAATAGAAATTGTGATGAATTTGTTTGACACTGAAAATATATTTTGTGACCA
* * *
2032567 TCAATGTTGTCACACTAAATATTTTTTTAGTGACCAAGTGT
66 TCAATGTTGTCACACTAAGTA--TTTTTAATGACCAAATGT
* * * * *
2032608 TCAACGCTATTATCAATAGAAATTGTGATAAATTTGTTTGCCACT-AAGAATATATTTTTATGAC
1 TCGACACTATTATCAATAGAAATTGTGATGAATTTGTTTGACACTGAA-AATATA-TTTTGTGAC
* *
2032672 C-TCCAATGTTATCACACTAAGT-TTTTTAATTGACCAAATAT
64 CAT-CAATGTTGTCACACTAAGTATTTTTAA-TGACCAAATGT
* * * * * * * * * *
2032713 TCTACACTGTTTTCCATTA-AAATTGT-ATGAATTTTTTTAACATTAAAAATATATTTTGTTACA
1 TCGACACTATTAT-CAATAGAAATTGTGATGAATTTGTTTGACACTGAAAATATATTTTGTGACC
* * * * *
2032776 ATCAATGTTGTTAGATTAAATATTTTTTTAGTGACCAAATGT
65 ATCAATGTTGTCACACTAAGTA--TTTTTAATGACCAAATGT
* * * *
2032818 TGGACACTATAATCATTAGAAATTGTGAT-AA-TT-TTT-ATCACTCAAAATATATTTTGTGAC
1 TCGACACTATTATCAATAGAAATTGTGATGAATTTGTTTGA-CACTGAAAATATATTTTGTGAC
2032878 AAAGCAAAGA
Statistics
Matches: 302, Mismatches: 59, Indels: 33
0.77 0.15 0.08
Matches are distributed among these distances:
102 1 0.00
103 43 0.14
104 33 0.11
105 56 0.19
106 141 0.47
107 27 0.09
108 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.40
Consensus pattern (104 bp):
TCGACACTATTATCAATAGAAATTGTGATGAATTTGTTTGACACTGAAAATATATTTTGTGACCA
TCAATGTTGTCACACTAAGTATTTTTAATGACCAAATGT
Found at i:2032785 original size:210 final size:212
Alignment explanation
Indices: 2032399--2032848 Score: 525
Period size: 210 Copynumber: 2.1 Consensus size: 212
2032389 CATCTAGTCG
* * *
2032399 ACACTATTATCAATATAAATTGTGATGAACTTATTCGACACTGAAAACATATTTTGTGACCATCA
1 ACACTATTATCAATAGAAATTGTGATAAACTTATTCGACACTGAAAACATATTTTATGACCATCA
* * * * *
2032464 ATGTTGTCACTCTAAGTATATATTTAATGACCAAATGTTCGACACAATTTTCAATGGAAATTTTG
66 ATGTTATCACACTAAGTATATATTTAATGACCAAATATTCGACACAATTTTCAATGAAAATTGTG
* * * *
2032529 ATGAATTTGTTTGACATTGAAGATATATTTTGTGACCATCAATGTTGTCACACTAAATATTTTTT
131 ATGAATTTGTTTAACATTAAAAATATATTTTGTGACAATCAATGTTGTCACACTAAATATTTTTT
*
2032594 TAGTGACCAAGTGTTCA
196 TAGTGACCAAATGTTCA
* * * * * *
2032611 ACGCTATTATCAATAGAAATTGTGATAAATTTGTTTGCCACT-AAGAATATATTTTTATGACC-T
1 ACACTATTATCAATAGAAATTGTGATAAACTTATTCGACACTGAA-AACATA-TTTTATGACCAT
* ** * *
2032674 CCAATGTTATCACACTAAGT-T-T-TTTAATTGACCAAATATTCTACACTGTTTTCCATTAAAAT
64 -CAATGTTATCACACTAAGTATATATTTAA-TGACCAAATATTCGACACAATTTTCAATGAAAAT
* * * * *
2032736 TGT-ATGAATTTTTTTAACATTAAAAATATATTTTGTTACAATCAATGTTGTTAGATTAAATATT
127 TGTGATGAATTTGTTTAACATTAAAAATATATTTTGTGACAATCAATGTTGTCACACTAAATATT
**
2032800 TTTTTAGTGACCAAATGTTGG
192 TTTTTAGTGACCAAATGTTCA
* *
2032821 ACACTATAATCATTAGAAATTGTGATAA
1 ACACTATTATCAATAGAAATTGTGATAA
2032849 TTTTTATCAC
Statistics
Matches: 200, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
210 100 0.50
211 32 0.16
212 42 0.21
213 26 0.13
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (212 bp):
ACACTATTATCAATAGAAATTGTGATAAACTTATTCGACACTGAAAACATATTTTATGACCATCA
ATGTTATCACACTAAGTATATATTTAATGACCAAATATTCGACACAATTTTCAATGAAAATTGTG
ATGAATTTGTTTAACATTAAAAATATATTTTGTGACAATCAATGTTGTCACACTAAATATTTTTT
TAGTGACCAAATGTTCA
Found at i:2034195 original size:21 final size:21
Alignment explanation
Indices: 2034171--2034223 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
2034161 TGAACCCTTG
2034171 GTATCGATACTATTTGAATGA
1 GTATCGATACTATTTGAATGA
2034192 GTATCGATACTATTTGAATGA
1 GTATCGATACTATTTGAATGA
2034213 GTATCGATACT
1 GTATCGATACT
2034224 CAACTATCGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (21 bp):
GTATCGATACTATTTGAATGA
Found at i:2034456 original size:24 final size:22
Alignment explanation
Indices: 2034407--2034457 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
2034397 TCTTATGATT
* **
2034407 ATTTTTCACACTTAAAACTCTT
1 ATTTTTCACACTTAAAAATCAA
2034429 ATTTTTCACACTTATAAAATACAA
1 ATTTTTCACACTTA-AAAAT-CAA
2034453 ATTTT
1 ATTTT
2034458 AACAACTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 14 0.58
23 4 0.17
24 6 0.25
ACGTcount: A:0.37, C:0.18, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTTTTCACACTTAAAAATCAA
Found at i:2041190 original size:23 final size:23
Alignment explanation
Indices: 2041134--2041192 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
2041124 ATGTAATCGA
2041134 TATTT-TATTTTAAATAATTTAC
1 TATTTATATTTTAAATAATTTAC
* *
2041156 T-TTTAATTTTTTAACTAATTTA-
1 TATTT-ATATTTTAAATAATTTAC
2041178 TAATTTATATTTTAA
1 T-ATTTATATTTTAA
2041193 GTCCTTTAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
21 3 0.10
22 2 0.07
23 22 0.73
24 3 0.10
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTTATATTTTAAATAATTTAC
Found at i:2041261 original size:26 final size:26
Alignment explanation
Indices: 2041232--2041295 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
2041222 TAAATTAATA
2041232 GTGCTCAACGATACTTATCATTAGTG
1 GTGCTCAACGATACTTATCATTAGTG
2041258 GTGCTCAACGATACTTATCATTAGTG
1 GTGCTCAACGATACTTATCATTAGTG
*
2041284 GTGCTCAGCGAT
1 GTGCTCAACGAT
2041296 GCTCGTCGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (26 bp):
GTGCTCAACGATACTTATCATTAGTG
Found at i:2042157 original size:120 final size:121
Alignment explanation
Indices: 2041933--2042177 Score: 402
Period size: 120 Copynumber: 2.0 Consensus size: 121
2041923 ACGATGATGT
* *
2041933 TGATGTGTCAATATAAGATAGTGCCAAGTCTTCATTAAAAAATGAAAAATATTACGTGAGAAATT
1 TGATGTGTCAACATAAGATAGTGCCAAGTCTTCATTAAAAAATGAAAAATATTACATGAGAAATT
* *
2041998 ATGTTAATTTTTAGACGATGATATACCAAATTAAAATTTAAATTAAACATTAGATA
66 ATGTTAATTTTTAAACGATAATATACCAAATTAAAATTTAAATTAAACATTAGATA
* * * *
2042054 TGATGTGTCACCATAAGATAGTGCTAAGTCTTTATTAAAAAATTAAAAATATTACAT-AGAAATT
1 TGATGTGTCAACATAAGATAGTGCCAAGTCTTCATTAAAAAATGAAAAATATTACATGAGAAATT
*
2042118 ATGTTAATTTTTAAACGATAATATACCAAATTAAAATTTAAATTAAACGTTAGATA
66 ATGTTAATTTTTAAACGATAATATACCAAATTAAAATTTAAATTAAACATTAGATA
2042174 TGAT
1 TGAT
2042178 TAAATAAAAA
Statistics
Matches: 115, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
120 64 0.56
121 51 0.44
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (121 bp):
TGATGTGTCAACATAAGATAGTGCCAAGTCTTCATTAAAAAATGAAAAATATTACATGAGAAATT
ATGTTAATTTTTAAACGATAATATACCAAATTAAAATTTAAATTAAACATTAGATA
Found at i:2045527 original size:28 final size:28
Alignment explanation
Indices: 2045495--2045567 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
2045485 AGTGTCGCAT
**
2045495 GGACCACCATGCGTCTCCTTTCCTCCTC
1 GGACCACTGTGCGTCTCCTTTCCTCCTC
2045523 GGACCACTGTGCGTCTCCTTTCCTCCTC
1 GGACCACTGTGCGTCTCCTTTCCTCCTC
2045551 GGACCACTGTGCGTCTC
1 GGACCACTGTGCGTCTC
2045568 TTCCCTTGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.10, C:0.42, G:0.19, T:0.29
Consensus pattern (28 bp):
GGACCACTGTGCGTCTCCTTTCCTCCTC
Found at i:2045788 original size:93 final size:93
Alignment explanation
Indices: 2045627--2045807 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
2045617 CCATGCATAG
* ** * * * *
2045627 CTATATTACGTAACCTGCTCATTAGATACAGTTATAACGAGCCATGCTTTGTATAATCCATACCC
1 CTATATTAAGTAACCTGCTCATTAGATACAACTATAACGAACCATGCTCTATATAATCCATACAC
2045692 TGACACTACAAGTTGCTAAAAAAGTTAT
66 TGACACTACAAGTTGCTAAAAAAGTTAT
* **
2045720 CTATATTAAGTAGCCTGCTCATTAGATACAACTATATTGAACCATG-TCCTATATAATCCATACA
1 CTATATTAAGTAACCTGCTCATTAGATACAACTATAACGAACCATGCT-CTATATAATCCATACA
2045784 CTGACACTACAAGTTGCTAAAAAA
65 CTGACACTACAAGTTGCTAAAAAA
2045808 AACTATGCGT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 1 0.01
93 76 0.99
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (93 bp):
CTATATTAAGTAACCTGCTCATTAGATACAACTATAACGAACCATGCTCTATATAATCCATACAC
TGACACTACAAGTTGCTAAAAAAGTTAT
Found at i:2045913 original size:16 final size:17
Alignment explanation
Indices: 2045889--2045929 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
2045879 TTATAACGAA
*
2045889 CCATGCCTTG-TATAAT
1 CCATACCTTGATATAAT
2045905 CCATACCTTGTATATAAT
1 CCATACCTTG-ATATAAT
2045923 CCATACC
1 CCATACC
2045930 CTGACACTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
18 13 0.59
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.34
Consensus pattern (17 bp):
CCATACCTTGATATAAT
Found at i:2054977 original size:25 final size:25
Alignment explanation
Indices: 2054943--2054997 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
2054933 ACCCACCCCT
2054943 TTCTTCTTCTCCAAGTTATTTT-TTC
1 TTCTTCTTCTCCAAGTT-TTTTCTTC
*
2054968 TTCTTCTTCTCCATGTTTTTTCTTC
1 TTCTTCTTCTCCAAGTTTTTTCTTC
2054993 TTCTT
1 TTCTT
2054998 ATAAAACGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.07, C:0.25, G:0.04, T:0.64
Consensus pattern (25 bp):
TTCTTCTTCTCCAAGTTTTTTCTTC
Found at i:2054986 original size:22 final size:24
Alignment explanation
Indices: 2054943--2054997 Score: 78
Period size: 22 Copynumber: 2.3 Consensus size: 24
2054933 ACCCACCCCT
2054943 TTCTTCTTCTCCAAGTTATTTTTTC
1 TTCTTCTTCTCCAAG-TATTTTTTC
*
2054968 TTCTTCTTCTCC-A-TGTTTTTTC
1 TTCTTCTTCTCCAAGTATTTTTTC
2054990 TTCTTCTT
1 TTCTTCTT
2054998 ATAAAACGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 16 0.55
24 1 0.03
25 12 0.41
ACGTcount: A:0.07, C:0.25, G:0.04, T:0.64
Consensus pattern (24 bp):
TTCTTCTTCTCCAAGTATTTTTTC
Found at i:2056023 original size:25 final size:25
Alignment explanation
Indices: 2055989--2056048 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
2055979 TTTTAGAAGA
*
2055989 AGAAGAAGAAGAAGAAATAACATGG
1 AGAAGAAGAAGAAAAAATAACATGG
* *
2056014 AGAATAAGAAGAAAAAATAACTTGG
1 AGAAGAAGAAGAAAAAATAACATGG
2056039 AGAAGAAGAA
1 AGAAGAAGAA
2056049 AGGGGTGGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.62, C:0.03, G:0.25, T:0.10
Consensus pattern (25 bp):
AGAAGAAGAAGAAAAAATAACATGG
Found at i:2056381 original size:42 final size:42
Alignment explanation
Indices: 2056330--2056421 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
2056320 AGTGAAATTC
*
2056330 TAAT-TATTTAAATAAAAATTATTTATGTAAAAAATCATCGA
1 TAATATATTTAAATAAAAATTATTTATATAAAAAATCATCGA
* *
2056371 TAATATATTTAGATAAAAATTATTTATATAAAAATTCATCGA
1 TAATATATTTAAATAAAAATTATTTATATAAAAAATCATCGA
2056413 TAATATATT
1 TAATATATT
2056422 ATTTTATTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
41 4 0.09
42 43 0.91
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (42 bp):
TAATATATTTAAATAAAAATTATTTATATAAAAAATCATCGA
Found at i:2056396 original size:15 final size:15
Alignment explanation
Indices: 2056331--2056406 Score: 54
Period size: 15 Copynumber: 5.3 Consensus size: 15
2056321 GTGAAATTCT
*
2056331 AATTATTTAAATAAA
1 AATTATTTAGATAAA
2056346 AATTATTTATG-TAAA
1 AATTATTTA-GATAAA
* *
2056361 AA--ATCATCGAT-AA
1 AATTAT-TTAGATAAA
*
2056374 TA-TATTTAGATAAA
1 AATTATTTAGATAAA
*
2056388 AATTATTTATATAAA
1 AATTATTTAGATAAA
2056403 AATT
1 AATT
2056407 CATCGATAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
13 10 0.21
14 7 0.15
15 30 0.64
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.41
Consensus pattern (15 bp):
AATTATTTAGATAAA
Found at i:2068810 original size:2 final size:2
Alignment explanation
Indices: 2068805--2068847 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
2068795 TGTTAATAAC
2068805 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2068847 T
1 T
2068848 TACTGAGAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2069301 original size:19 final size:19
Alignment explanation
Indices: 2069277--2069313 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2069267 TTATTTTTTA
* *
2069277 TTATTTTACAATACAAATT
1 TTATTTTAAAATAAAAATT
2069296 TTATTTTAAAATAAAAAT
1 TTATTTTAAAATAAAAAT
2069314 AACTTCTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TTATTTTAAAATAAAAATT
Found at i:2069342 original size:3 final size:3
Alignment explanation
Indices: 2069327--2069390 Score: 119
Period size: 3 Copynumber: 21.3 Consensus size: 3
2069317 TTCTTATCAC
*
2069327 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2069375 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
2069391 GTCTAGGAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:2073770 original size:20 final size:19
Alignment explanation
Indices: 2073745--2073789 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
2073735 TGTTTATATA
2073745 TAAAAAAAATAATAAGATAC
1 TAAAAAAAATAATAA-ATAC
**
2073765 TAAAAAGTATAATAAATAC
1 TAAAAAAAATAATAAATAC
2073784 -AAAAAA
1 TAAAAAA
2073790 CGGAAAGGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 5 0.23
19 4 0.18
20 13 0.59
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.20
Consensus pattern (19 bp):
TAAAAAAAATAATAAATAC
Found at i:2075481 original size:105 final size:106
Alignment explanation
Indices: 2075292--2076068 Score: 1205
Period size: 105 Copynumber: 7.4 Consensus size: 106
2075282 GTATTGTTCC
* * * * * * *
2075292 GAGTCCAATATCCTCCGCTGTGACGTTGGAACTGGTTCTGAAA-CTGGGAAAT-TACTTGTTGAC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGAGAAATGT--TTGTTGAC
* *
2075355 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTG
64 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
* * * *
2075398 GAGTCCAATATCCTTCGTTGGGAAGTTGAAATTGGCTCTGAAA-TGGAGAAATGTTTGGTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGAGAAATGTTTGTTGACAA
* *
2075462 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
* *
2075503 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAA-TTGAGAAATTGTTTATTGACA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGAGAAA-TGTTTGTTGACA
* *
2075567 ACCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTG
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
*
2075609 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-AAATTTGAGCAATGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGAGAAATGTTTGTTGACAA
*
2075673 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
*
2075714 GAGTCCAATATCCTTCG-TGGTGAAGTTGAAATTGGATCTG-AATTTGAGAAATGTTTGTTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTTGAGAAATGTTTGTTGACA
2075777 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
*
2075819 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-AAATTTGAGCAATGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGAGAAATGTTTGTTGACAA
*
2075883 CTAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
*
2075924 GAGTCCAATATCCTTCG-TGGTGAAGTTGAAATTGGCTCT-AAATTTGAGCAATGTTTGTTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTTGAGAAATGTTTGTTGACA
2075987 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
*
2076029 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTG
2076069 GGTAAAACCT
Statistics
Matches: 631, Mismatches: 30, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
104 2 0.00
105 489 0.77
106 139 0.22
107 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGAGAAATGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
Found at i:2086338 original size:20 final size:20
Alignment explanation
Indices: 2086300--2086343 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
2086290 ACGGTTAGTA
*
2086300 AAATAAAAATAAATGGAAAT
1 AAATAAAAATAAATAGAAAT
2086320 AAATAAAAATAACA-AGAAAT
1 AAATAAAAATAA-ATAGAAAT
2086340 AAAT
1 AAAT
2086344 GGTAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.18
Consensus pattern (20 bp):
AAATAAAAATAAATAGAAAT
Found at i:2087789 original size:20 final size:19
Alignment explanation
Indices: 2087764--2087808 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
2087754 TGTTTATATA
2087764 TAAAAAAAATAATAAGATAC
1 TAAAAAAAATAATAA-ATAC
**
2087784 TAAAAAGTATAATAAATAC
1 TAAAAAAAATAATAAATAC
2087803 -AAAAAA
1 TAAAAAA
2087809 CGGAAAGGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 5 0.23
19 4 0.18
20 13 0.59
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.20
Consensus pattern (19 bp):
TAAAAAAAATAATAAATAC
Found at i:2089804 original size:52 final size:52
Alignment explanation
Indices: 2089725--2089851 Score: 236
Period size: 52 Copynumber: 2.4 Consensus size: 52
2089715 ATATTTTAAA
* *
2089725 AAAATATTCCCCGATGCTAGAACTATGGATCGACGAGAGTACTTTACCCTAT
1 AAAATATTCCCCGATGCTAAAATTATGGATCGACGAGAGTACTTTACCCTAT
2089777 AAAATATTCCCCGATGCTAAAATTATGGATCGACGAGAGTACTTTACCCTAT
1 AAAATATTCCCCGATGCTAAAATTATGGATCGACGAGAGTACTTTACCCTAT
2089829 AAAATATTCCCCGATGCTAAAAT
1 AAAATATTCCCCGATGCTAAAAT
2089852 CGCCTCTTTA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (52 bp):
AAAATATTCCCCGATGCTAAAATTATGGATCGACGAGAGTACTTTACCCTAT
Found at i:2106873 original size:48 final size:48
Alignment explanation
Indices: 2106821--2107535 Score: 969
Period size: 48 Copynumber: 15.0 Consensus size: 48
2106811 AGTTACCTTC
* *
2106821 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCCTATTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* * * *
2106869 TGAAGAAACAAGCAATGCTATTCAAACCAGTAAAA-TTCCTCTTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTT-CTCTTGTTGA
* * *
2106917 TAAAGAAGGAAACAATGTTATTCAGACCGGTAAAAGTTCTCTTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* * * *
2106965 TGAAGAAGCAAACAACGTTATTCAGAGCAGTAAAAATTCTCCTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
** **
2107013 TGAAGAAGCAGGCAATGTTATTCAGACTGGTAAAAGTTCTCTTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* * * *
2107061 TGAAAAAGCAAACAATGTTATTCAAACTAGTAAAAGTTCTCCTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* *
2107109 TGAAGCAGCAAACAATGTTATTCAAACCAGTAAAAG-T-TC-TGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* *
2107154 TGAAGAAGCAAACTATATTATTCAGACCAGTAAAAGTTCTCTTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* ** *
2107202 TGAAGAAGCAAACAATGTTATTCAAATTAGTAAAAATTCTCTTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
*
2107250 TGAAGAAGCAAACAATGTTATTCATACCAGTAAAAGTTCTCTTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* * *
2107298 TGAAGCAGCAAACAATGTTATTCAAACCAGTAAAAGTTCTCCTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
*
2107346 TGAAGAAGCAAACAATATTATTCAGACCAGTAAAAGTTCTC---TTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
*
2107391 TGAAGAAGCAAACAATGTTATTCAAACCAGTAAAAGTTCTCTTGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* * *
2107439 TGAAGAAGCAAATAATGTTATCCAGACCAGTAAAAGTTCTCATGTTGA
1 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* * * * *
2107487 TGAAGAATCACAA-AATGTTTTTCAGATCAATAAAAGTTCTTTTGTTGA
1 TGAAGAAGCA-AACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
2107535 T
1 T
2107536 CCTTTAGAGT
Statistics
Matches: 588, Mismatches: 70, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
45 81 0.14
46 3 0.01
47 5 0.01
48 495 0.84
49 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (48 bp):
TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
Found at i:2107250 original size:237 final size:237
Alignment explanation
Indices: 2106821--2107535 Score: 1036
Period size: 237 Copynumber: 3.0 Consensus size: 237
2106811 AGTTACCTTC
* * * *
2106821 TGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCCTATTGATGAAGAAACAAGCAATG
1 TGAAGAAGCAAACAATGTTATTCAAACCAGTAAAAGTTCTCCTGTTGATGAAGAAGCAAACAATG
* * * * *
2106886 CTATTCAAACCAGTAAAATTCCTCTTGTTGATAAAGAAGGAAACAATGTTATTCAGACCGGTAAA
66 TTATTCAAACCAGTAAAAGT--TC-TGTTGATGAAGAAGCAAACAATGTTATTCAGACCAGTAAA
* * *
2106951 AGTTCTCTTGTTGATGAAGAAGCAAACAACGTTATTCAGAGCAGTAAAAATTCTCCTGTTGATGA
128 AGTTCTCTTGTTGATGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAATTCTCATGTTGATGA
** **
2107016 AGAAGCAGGCAATGTTATTCAGACTGGTAAAAGTTCTCTTGTTGA
193 AGAAGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* * *
2107061 TGAAAAAGCAAACAATGTTATTCAAACTAGTAAAAGTTCTCCTGTTGATGAAGCAGCAAACAATG
1 TGAAGAAGCAAACAATGTTATTCAAACCAGTAAAAGTTCTCCTGTTGATGAAGAAGCAAACAATG
* *
2107126 TTATTCAAACCAGTAAAAGTTCTGTTGATGAAGAAGCAAACTATATTATTCAGACCAGTAAAAGT
66 TTATTCAAACCAGTAAAAGTTCTGTTGATGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGT
* ** *
2107191 TCTCTTGTTGATGAAGAAGCAAACAATGTTATTCAAATTAGTAAAAATTCTCTTGTTGATGAAGA
131 TCTCTTGTTGATGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAATTCTCATGTTGATGAAGA
*
2107256 AGCAAACAATGTTATTCATACCAGTAAAAGTTCTCTTGTTGA
196 AGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
* *
2107298 TGAAGCAGCAAACAATGTTATTCAAACCAGTAAAAGTTCTCCTGTTGATGAAGAAGCAAACAATA
1 TGAAGAAGCAAACAATGTTATTCAAACCAGTAAAAGTTCTCCTGTTGATGAAGAAGCAAACAATG
* * *
2107363 TTATTCAGACCAGTAAAAGTTCTCTTGATGAAGAAGCAAACAATGTTATTCAAACCAGTAAAAGT
66 TTATTCAAACCAGTAAAAGTTCTGTTGATGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGT
* * *
2107428 TCTCTTGTTGATGAAGAAGCAAATAATGTTATCCAGACCAGTAAAAGTTCTCATGTTGATGAAGA
131 TCTCTTGTTGATGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAATTCTCATGTTGATGAAGA
* * * * *
2107493 ATCACAA-AATGTTTTTCAGATCAATAAAAGTTCTTTTGTTGA
196 AGCA-AACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
2107535 T
1 T
2107536 CCTTTAGAGT
Statistics
Matches: 427, Mismatches: 47, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
237 347 0.81
238 4 0.01
240 76 0.18
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (237 bp):
TGAAGAAGCAAACAATGTTATTCAAACCAGTAAAAGTTCTCCTGTTGATGAAGAAGCAAACAATG
TTATTCAAACCAGTAAAAGTTCTGTTGATGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAGT
TCTCTTGTTGATGAAGAAGCAAACAATGTTATTCAGACCAGTAAAAATTCTCATGTTGATGAAGA
AGCAAACAATGTTATTCAGACCAGTAAAAGTTCTCTTGTTGA
Found at i:2109280 original size:21 final size:21
Alignment explanation
Indices: 2109254--2109301 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
2109244 TGATTCTGAT
*
2109254 GATGATGATGATTATAATCTC-
1 GATGATAATGATTATAATC-CA
2109275 GATGATAATGATTATAATCCA
1 GATGATAATGATTATAATCCA
2109296 GATGAT
1 GATGAT
2109302 TCAGAAACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 1 0.04
21 24 0.96
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (21 bp):
GATGATAATGATTATAATCCA
Found at i:2112568 original size:21 final size:21
Alignment explanation
Indices: 2112534--2112573 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
2112524 TTTTTGCAGA
*
2112534 AAAACCATCTCCAAACGGCTCG
1 AAAACCATC-CCCAACGGCTCG
2112556 AAAA-CATCCCCAACGGCT
1 AAAACCATCCCCAACGGCT
2112574 AGATATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 4 0.24
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.12, T:0.12
Consensus pattern (21 bp):
AAAACCATCCCCAACGGCTCG
Found at i:2113229 original size:37 final size:37
Alignment explanation
Indices: 2113175--2113271 Score: 124
Period size: 37 Copynumber: 2.6 Consensus size: 37
2113165 CCTTTTCGTC
* *
2113175 CTACTAGGATTCAAACTCCTAAAAATAGGTTAGAATT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* *
2113212 TTGA-TAGGATTTAAACTCCTAAAAATAGGATAGAGTT
1 CT-ACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* *
2113249 CTACTATGATTTAAACTGCTAAA
1 CTACTAGGATTTAAACTCCTAAA
2113272 GATAAGATCC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
36 1 0.02
37 49 0.96
38 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.32
Consensus pattern (37 bp):
CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
Found at i:2113897 original size:38 final size:37
Alignment explanation
Indices: 2113825--2114004 Score: 112
Period size: 37 Copynumber: 4.9 Consensus size: 37
2113815 TTCTTTGAAT
*
2113825 TTTTATTATACTATATATTATTTATTTTATTTTTTTC
1 TTTTATTATACTATATATTATTTATTGTATTTTTTTC
* * * * *
2113862 TTTTATTCTACTTATTTATTATATATGTATATTTTTTATA
1 TTTTATTATAC-TATATATTATTTAT-TGTATTTTTT-TC
2113902 TTTTATTAT--TAT-TA-TATTT-TT-TACTTTCTCTTTC
1 TTTTATTATACTATATATTATTTATTGTA-TTT-T-TTTC
*
2113936 TTTTATTATTCT-TATATTA-TTACTTGTATTATTTTT-
1 TTTTATTATACTATATATTATTTA-TTGTATT-TTTTTC
* * *
2113972 ATATATTTATA-TATATATTATATATT-TATTTTT
1 TTTTA-TTATACTATATATTATTTATTGTATTTTT
2114005 ATATATTATT
Statistics
Matches: 114, Mismatches: 12, Indels: 36
0.70 0.07 0.22
Matches are distributed among these distances:
32 2 0.02
33 4 0.04
34 12 0.11
35 10 0.09
36 15 0.13
37 31 0.27
38 19 0.17
39 12 0.11
40 9 0.08
ACGTcount: A:0.26, C:0.06, G:0.01, T:0.68
Consensus pattern (37 bp):
TTTTATTATACTATATATTATTTATTGTATTTTTTTC
Found at i:2113923 original size:25 final size:25
Alignment explanation
Indices: 2113876--2114063 Score: 81
Period size: 25 Copynumber: 7.3 Consensus size: 25
2113866 ATTCTACTTA
2113876 TTTATTATATATGTATATTTTTTATAT
1 TTTATTAT-TAT-TATATTTTTTATAT
2113903 TTTATTATTATTATATTTTTTACT-T
1 TTTATTATTATTATATTTTTTA-TAT
* *
2113928 TCTCT-TTCTT-TTAT-TATTCTTATAT
1 T-T-TATTATTATTATAT-TTTTTATAT
* *
2113953 TATTACTT-GTATTAT-TTTTATATA-
1 T-TTA-TTATTATTATATTTTTTATAT
*
2113977 TTTATATATATATTATA-TATTTAT-T
1 TTTAT-TAT-TATTATATTTTTTATAT
*
2114002 TTTATATATTATTGATATATATTTTTTAT
1 TTTAT-TATTATT-ATAT-T-TTTTATAT
* * * *
2114031 TTTCTATATT-TTATATATTATATTT
1 TTTAT-TATTATTATATTTTTTATAT
2114056 TTTATTAT
1 TTTATTAT
2114064 ATATATCATT
Statistics
Matches: 126, Mismatches: 17, Indels: 39
0.69 0.09 0.21
Matches are distributed among these distances:
22 1 0.01
23 4 0.03
24 11 0.09
25 64 0.51
26 16 0.13
27 14 0.11
28 6 0.05
29 10 0.08
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTATTATTATTATATTTTTTATAT
Found at i:2113967 original size:12 final size:11
Alignment explanation
Indices: 2113933--2113975 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
2113923 TACTTTCTCT
*
2113933 TTCTTTTATTA
1 TTCTTATATTA
2113944 TTCTTATATTA
1 TTCTTATATTA
*
2113955 TTACTTGTATTA
1 TT-CTTATATTA
*
2113967 TTTTTATAT
1 TTCTTATAT
2113976 ATTTATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.67
Consensus pattern (11 bp):
TTCTTATATTA
Found at i:2113988 original size:14 final size:14
Alignment explanation
Indices: 2113971--2114083 Score: 61
Period size: 13 Copynumber: 8.8 Consensus size: 14
2113961 GTATTATTTT
2113971 TATATA-TT-TATA
1 TATATATTTATATA
2113983 TATATA-TTATATA
1 TATATATTTATATA
*
2113996 T-T-TATTTTTATA
1 TATATATTTATATA
*
2114008 TAT-TATTGATATA
1 TATATATTTATATA
* *
2114021 TAT-TTTTTAT-TT
1 TATATATTTATATA
*
2114033 TCTATATTT-TATA
1 TATATATTTATATA
*
2114046 TATTATATTT-TTTA
1 TA-TATATTTATATA
*
2114060 T-TATATATATCAT-
1 TATATATTTAT-ATA
2114073 TATATATTTAT
1 TATATATTTAT
2114084 TTTTTTTATT
Statistics
Matches: 78, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
11 2 0.03
12 26 0.33
13 30 0.38
14 20 0.26
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.64
Consensus pattern (14 bp):
TATATATTTATATA
Found at i:2114007 original size:23 final size:25
Alignment explanation
Indices: 2113971--2114030 Score: 81
Period size: 23 Copynumber: 2.5 Consensus size: 25
2113961 GTATTATTTT
*
2113971 TATATATTTATATATA-TATT-ATA
1 TATATATTTTTATATATTATTGATA
*
2113994 TATTTATTTTTATATATTATTGATA
1 TATATATTTTTATATATTATTGATA
2114019 TATAT-TTTTTAT
1 TATATATTTTTAT
2114031 TTTCTATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 14 0.44
24 11 0.34
25 7 0.22
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
TATATATTTTTATATATTATTGATA
Found at i:2114068 original size:23 final size:23
Alignment explanation
Indices: 2113971--2114077 Score: 67
Period size: 23 Copynumber: 4.6 Consensus size: 23
2113961 GTATTATTTT
* *
2113971 TATATAT-TTATA-TATATATTA
1 TATATATATTATATTTTTTATTA
* * * *
2113992 TATATTTATTTTTATATATTATTGA
1 TATATATA-TTATATTTTTTATT-A
* * *
2114017 TATATATTTTTTATTTTCTA-TA
1 TATATATATTATATTTTTTATTA
*
2114039 TTTTATATATTATATTTTTTATTA
1 -TATATATATTATATTTTTTATTA
2114063 TATATATCATTATAT
1 TATATAT-ATTATAT
2114078 ATTTATTTTT
Statistics
Matches: 63, Mismatches: 16, Indels: 11
0.70 0.18 0.12
Matches are distributed among these distances:
21 6 0.10
22 1 0.02
23 27 0.43
24 22 0.35
25 7 0.11
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.64
Consensus pattern (23 bp):
TATATATATTATATTTTTTATTA
Found at i:2114098 original size:29 final size:27
Alignment explanation
Indices: 2113977--2114098 Score: 108
Period size: 27 Copynumber: 4.4 Consensus size: 27
2113967 TTTTTATATA
2113977 TTTATATATATATTATATATTTATTTTT
1 TTTAT-TATATATTATATATTTATTTTT
* *
2114005 ATATATTAT-TGA-TATATATTT-TTTAT
1 -TTTATTATAT-ATTATATATTTATTTTT
* *
2114031 TTT-CTATATTTTATATATTATATTTTT
1 TTTATTATATATTATATATT-TATTTTT
2114058 TATTATATATATCATTATATATTTATTTTT
1 T-TTAT-TATAT-ATTATATATTTATTTTT
2114088 TTTATTGATAT
1 TTTATT-ATAT
2114099 TATTGTTGTT
Statistics
Matches: 75, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
24 3 0.04
25 11 0.15
26 5 0.07
27 15 0.20
28 7 0.09
29 12 0.16
30 13 0.17
31 9 0.12
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (27 bp):
TTTATTATATATTATATATTTATTTTT
Found at i:2114515 original size:18 final size:21
Alignment explanation
Indices: 2114492--2114539 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 21
2114482 ATTTGTTTTT
2114492 TTTACTTAC-T-ATTTTATC-
1 TTTACTTACTTCATTTTATCA
*
2114510 TTTACTTTCTTCATTTTATCA
1 TTTACTTACTTCATTTTATCA
2114531 TTTTACTTA
1 -TTTACTTA
2114540 ATTTGTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 8 0.33
19 1 0.04
20 8 0.33
22 7 0.29
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTACTTACTTCATTTTATCA
Found at i:2119120 original size:22 final size:22
Alignment explanation
Indices: 2119095--2119165 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 22
2119085 CAATCAGAAC
2119095 AAAAAGAGCAAAAAGAAAAAAG
1 AAAAAGAGCAAAAAGAAAAAAG
*
2119117 -AAAAGAAGCAAAAAAGAACAAA-
1 AAAAAG-AGC-AAAAAGAAAAAAG
* **
2119139 AAAAAGAACAAAAATCAAAAAG
1 AAAAAGAGCAAAAAGAAAAAAG
2119161 AAAAA
1 AAAAA
2119166 AGGACAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
21 14 0.35
22 10 0.25
23 16 0.40
ACGTcount: A:0.79, C:0.07, G:0.13, T:0.01
Consensus pattern (22 bp):
AAAAAGAGCAAAAAGAAAAAAG
Found at i:2119122 original size:12 final size:12
Alignment explanation
Indices: 2119104--2119152 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
2119094 CAAAAAGAGC
2119104 AAAAAGAA-AAA
1 AAAAAGAACAAA
2119115 AGAAAAGAAGC--A
1 A-AAAAGAA-CAAA
2119127 AAAAAGAACAAA
1 AAAAAGAACAAA
2119139 AAAAAGAACAAA
1 AAAAAGAACAAA
2119151 AA
1 AA
2119153 TCAAAAAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
10 1 0.03
11 8 0.24
12 24 0.73
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAGAACAAA
Found at i:2119134 original size:23 final size:22
Alignment explanation
Indices: 2119096--2119164 Score: 81
Period size: 21 Copynumber: 3.2 Consensus size: 22
2119086 AATCAGAACA
2119096 AAAAG-AGCAAAAAGAAAAAAG
1 AAAAGAAGCAAAAAGAAAAAAG
2119117 AAAAGAAGCAAAAAAGAACAAAA-
1 AAAAGAAGC-AAAAAGAA-AAAAG
**
2119140 AAAAGAA-CAAAAATCAAAAAG
1 AAAAGAAGCAAAAAGAAAAAAG
2119161 AAAA
1 AAAA
2119165 AAGGACAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
20 4 0.10
21 15 0.36
22 4 0.10
23 15 0.36
24 4 0.10
ACGTcount: A:0.78, C:0.07, G:0.13, T:0.01
Consensus pattern (22 bp):
AAAAGAAGCAAAAAGAAAAAAG
Found at i:2119158 original size:28 final size:27
Alignment explanation
Indices: 2119105--2119166 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 27
2119095 AAAAAGAGCA
*
2119105 AAAAGAAAAAAGAAAAGAAGCAAAAAAG
1 AAAA-AAAAAAGAAAAAAAGCAAAAAAG
*
2119133 AACAAAAAAAAGAACAAAAATC-AAAAAG
1 AA-AAAAAAAAGAA-AAAAAGCAAAAAAG
2119161 AAAAAA
1 AAAAAA
2119167 GGACAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
27 4 0.13
28 19 0.63
29 7 0.23
ACGTcount: A:0.81, C:0.06, G:0.11, T:0.02
Consensus pattern (27 bp):
AAAAAAAAAAGAAAAAAAGCAAAAAAG
Found at i:2119846 original size:22 final size:22
Alignment explanation
Indices: 2119772--2119848 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
2119762 GCTACCCCAT
*
2119772 CAAACCGTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
* *
2119794 CAAACCTATGAGCATCACATGC
1 CAAACCTTTGAGCATCAAATGC
2119816 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
2119838 CAAACCTTTGA
1 CAAACCTTTGA
2119849 CCAAACATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:2120289 original size:18 final size:19
Alignment explanation
Indices: 2120266--2120302 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
2120256 TCAACATCAA
2120266 ATATTGGGGCATT-TTTGG
1 ATATTGGGGCATTATTTGG
2120284 ATATTGGGGCATTATTTGG
1 ATATTGGGGCATTATTTGG
2120303 GGATTCAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.43
Consensus pattern (19 bp):
ATATTGGGGCATTATTTGG
Found at i:2120884 original size:106 final size:106
Alignment explanation
Indices: 2120676--2122147 Score: 2174
Period size: 106 Copynumber: 14.0 Consensus size: 106
2120666 ATATCATGCC
* * ** * * * ***
2120676 ACTCAAGACAACACAAGTTCAACTTCAAAACAAAGGGACGGCTGGTTGTCAAC-AACAATTTTTT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * **
2120740 GATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
2120781 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
2120846 AATTTCAGATCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
2120887 ACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* **
2120952 AATTTCA-TGCCAATTTCAACTTCACAGTGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
2120992 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
2121057 AATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
2121098 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
2121163 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
2121204 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
2121269 AATTT-AGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
2121309 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTATCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
2121374 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
2121415 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGTACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
2121480 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
2121521 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
2121586 AATTTCAGAGCCAATTTTAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
2121627 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
2121692 AATTTTAGAGCCAATTTCAACTTCACAACGAATGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
2121733 ACTCCAAACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
2121798 AATTTCAGAGCCAATTTCAACTTCACAGCGTAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
2121839 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * * *
2121904 AATTTCAGAGCCAATTTCAACTTCTCAGCGAATGATCTTGA
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * *
2121945 AC-CCAAGGCAACACAAGCTCAACTTCACGACGAAGAGG-CGGCTGATTGTCAAC-AA-AA-TT-
1 ACTCC-AGACAACGCAAGTTCAACTTCACGACGAAG-GGACCGCTGGTTGTCAACAAACAACTTC
* * *
2122004 TC-A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
64 CCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * * *
2122045 ACTCGAGACAACACAAGTTCAACTTCACAACGAATGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
** * * *
2122110 GGTTCCAGAGCCAATTTCAACTTCACGACGGAGGATAT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATAT
2122148 CCAATTTCAG
Statistics
Matches: 1254, Mismatches: 100, Indels: 25
0.91 0.07 0.02
Matches are distributed among these distances:
99 2 0.00
100 75 0.06
101 4 0.00
102 3 0.00
103 4 0.00
104 3 0.00
105 248 0.20
106 913 0.73
107 2 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:2121255 original size:317 final size:318
Alignment explanation
Indices: 2120676--2122147 Score: 2223
Period size: 317 Copynumber: 4.7 Consensus size: 318
2120666 ATATCATGCC
* * ** * * * * *
2120676 ACTCAAGACAACACAAGTTCAACTTCAAAACAAAGGGACGGCTGGTTGTCAAC-AACAATTTTTT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
* * **
2120740 GATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
*
2120805 TCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTTC
131 TCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTC
*
2120870 ACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTG
196 ACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTG
* * **
2120935 TCAATAAACAACTTTCCAATTTCA-TGCCAATTTCAACTTCACAGTGAAGGATATTGG
261 TCAACAAACAACTTTCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
2120992 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
* *
2121057 AATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGGACTCCAGACAATGCAAGTTCAACT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
*
2121122 TCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTC
131 TCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTC
* *
2121187 ACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTG
196 ACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTG
2121252 TCAACAAACAAC-TTCTCAATTT-AGAGCCAATTTCAACTTCACAACGAAGGATATTGG
261 TCAACAAACAACTTTC-CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
2121309 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTATCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
2121374 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
* * * *
2121439 TCACGACGAAGGTACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTC
131 TCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTC
2121504 ACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTG
196 ACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTG
* *
2121569 TCAACAAATAA-TTTCCCAATTTCAGAGCCAATTTTAACTTCACAACGAAGGATATTGG
261 TCAACAAACAACTTT-CCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
2121627 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
* * *
2121692 AATTTTAGAGCCAATTTCAACTTCACAACGAATGATATTGGACTCCAAACAACGCAAGTTCAACT
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
2121757 TCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTC
131 TCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTC
* * *
2121822 ACAGCGTAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTG
196 ACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTG
* * * * * * * *
2121887 TCAATAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCTCAGCGAATGATCTTGA
261 TCAACAAACAACTTTCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * *
2121945 AC-CCAAGGCAACACAAGCTCAACTTCACGACGAAGAGG-CGGCTGATTGTCAAC-AA-AA-TT-
1 ACTCC-AGACAACGCAAGTTCAACTTCACGACGAAG-GGACCGCTGGTTGTCAACAAACAACTTC
* * * *
2122004 TC-A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAA
64 TCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAA
* * * * ** *
2122067 CTTCACAACGAATGGACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCCAATTTCAACT
129 CTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACT
* *
2122132 TCACGACGGAGGATAT
194 TCACAACGAAGGATAT
2122148 CCAATTTCAG
Statistics
Matches: 1068, Mismatches: 79, Indels: 22
0.91 0.07 0.02
Matches are distributed among these distances:
312 124 0.12
313 1 0.00
314 2 0.00
315 2 0.00
316 53 0.05
317 512 0.48
318 370 0.35
319 4 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (318 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACT
TCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTC
ACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTG
TCAACAAACAACTTTCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:2122879 original size:37 final size:37
Alignment explanation
Indices: 2122826--2122930 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
2122816 CATTTTCGTC
* *
2122826 CTACTAGGATTCAAACTCCTAAAAATAGGTTAGAATT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* * *
2122863 TTGCTAGGATTTAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* *
2122900 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTTAAACTCCTAAAAATAGGAT
2122931 CCACAAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
Found at i:2123570 original size:15 final size:15
Alignment explanation
Indices: 2123526--2123570 Score: 60
Period size: 13 Copynumber: 3.2 Consensus size: 15
2123516 ATTCTACTTA
2123526 TTTA-TATTATATAT
1 TTTATTATTATATAT
*
2123540 TATATT-TT-TATAT
1 TTTATTATTATATAT
2123553 TTTATTATTATATAT
1 TTTATTATTATATAT
2123568 TTT
1 TTT
2123571 TACTTTCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 10 0.38
14 7 0.27
15 9 0.35
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTATTATTATATAT
Found at i:2124030 original size:24 final size:23
Alignment explanation
Indices: 2124003--2124071 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 23
2123993 TTATTAGTAT
2124003 TATTACTATATATATATATATATA
1 TATT-CTATATATATATATATATA
*
2124027 TATTGTAT-TATATAT-TATAT-
1 TATTCTATATATATATATATATA
* * *
2124047 TATTTTTTATAT-TATATATGTA
1 TATTCTATATATATATATATATA
2124069 TAT
1 TAT
2124072 GTTCTTTTCG
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 9 0.24
21 12 0.32
22 10 0.26
23 3 0.08
24 4 0.11
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (23 bp):
TATTCTATATATATATATATATA
Found at i:2124038 original size:22 final size:21
Alignment explanation
Indices: 2124013--2124071 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
2124003 TATTACTATA
2124013 TATATATATATATATATTGTAT
1 TATATATATATATATATT-TAT
*
2124035 TATATAT-TATAT-TATTTTT
1 TATATATATATATATATTTAT
*
2124054 TATATTATATATGTATAT
1 TATA-TATATATATATAT
2124072 GTTCTTTTCG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 6 0.19
20 7 0.22
21 9 0.28
22 10 0.31
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.59
Consensus pattern (21 bp):
TATATATATATATATATTTAT
Found at i:2124047 original size:17 final size:17
Alignment explanation
Indices: 2124017--2124069 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
2124007 ACTATATATA
2124017 TATATATATATATTGTAT
1 TATATAT-TATATTGTAT
* *
2124035 TATATATTATATTATTT
1 TATATATTATATTGTAT
*
2124052 TTTATATTATATATGTAT
1 TATATATTATAT-TGTAT
2124070 ATGTTCTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
17 19 0.66
18 10 0.34
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (17 bp):
TATATATTATATTGTAT
Found at i:2124152 original size:1 final size:1
Alignment explanation
Indices: 2124141--2124188 Score: 60
Period size: 1 Copynumber: 48.0 Consensus size: 1
2124131 TTATTCGCAC
* * * *
2124141 TTTTTTATTTTTTTTTTTTTTTATTTTTTTTTTTTCTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2124189 ATATATTTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.04, C:0.04, G:0.00, T:0.92
Consensus pattern (1 bp):
T
Found at i:2124162 original size:16 final size:16
Alignment explanation
Indices: 2124141--2124214 Score: 78
Period size: 16 Copynumber: 4.4 Consensus size: 16
2124131 TTATTCGCAC
2124141 TTTTTTATTTTTTTTT
1 TTTTTTATTTTTTTTT
2124157 TTTTTTATTTTTTTTT
1 TTTTTTATTTTTTTTT
2124173 TTTCTTT-TTCTTTTTTAT
1 TTT-TTTATT-TTTTTT-T
* * *
2124191 ATATTTTATTATTTGTT
1 -TTTTTTATTTTTTTTT
2124208 TTTTTTA
1 TTTTTTA
2124215 CTTACTATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
16 27 0.55
17 10 0.20
18 8 0.16
19 4 0.08
ACGTcount: A:0.11, C:0.03, G:0.01, T:0.85
Consensus pattern (16 bp):
TTTTTTATTTTTTTTT
Found at i:2126377 original size:21 final size:21
Alignment explanation
Indices: 2126353--2126412 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
2126343 TATATTTTCC
*
2126353 AACAATTGGTATCCTTTTGTT
1 AACAATTGCTATCCTTTTGTT
2126374 AACAATTGCTATCCTTTTGTT
1 AACAATTGCTATCCTTTTGTT
*
2126395 AACAATTGCTATCTTTTT
1 AACAATTGCTATCCTTTT
2126413 CATTAAACAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (21 bp):
AACAATTGCTATCCTTTTGTT
Found at i:2126694 original size:35 final size:35
Alignment explanation
Indices: 2126628--2126695 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
2126618 ATACAAATGG
*
2126628 GTACCGATACCCCTTCAAAGGGTATCCATACCCGGT
1 GTACCGATACCCCTGC-AAGGGTATCCATACCCGGT
*
2126664 GTACCGATACCCCCTGC-AGGGTATCTATACCC
1 GTACCGATA-CCCCTGCAAGGGTATCCATACCC
2126696 CTATGACTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
35 14 0.48
36 9 0.31
37 6 0.21
ACGTcount: A:0.24, C:0.35, G:0.19, T:0.22
Consensus pattern (35 bp):
GTACCGATACCCCTGCAAGGGTATCCATACCCGGT
Found at i:2132130 original size:31 final size:29
Alignment explanation
Indices: 2132069--2132157 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 29
2132059 GAAAATGTAT
* * *
2132069 AACTTTTTAAAATTATATTTTGGTCCCTA
1 AACTTTTTAAAATTATACTTTAGTCACTA
*
2132098 AACTTTTATAAAATTTATACTTTATTCACTA
1 AACTTTT-TAAAA-TTATACTTTAGTCACTA
* *
2132129 AAC-TTTCAAAACTTATAATTTAGTCACTA
1 AACTTTTTAAAA-TTATACTTTAGTCACTA
2132158 GTTAAAATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
29 26 0.52
30 8 0.16
31 16 0.32
ACGTcount: A:0.37, C:0.15, G:0.03, T:0.45
Consensus pattern (29 bp):
AACTTTTTAAAATTATACTTTAGTCACTA
Found at i:2132255 original size:21 final size:22
Alignment explanation
Indices: 2132226--2132266 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
2132216 CACATATCAA
2132226 ACTTATAAAATAAAAAAAAAGT
1 ACTTATAAAATAAAAAAAAAGT
2132248 ACTT-TAAAATAAAAAAAAA
1 ACTTATAAAATAAAAAAAAA
2132267 TCTAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (22 bp):
ACTTATAAAATAAAAAAAAAGT
Found at i:2137293 original size:15 final size:17
Alignment explanation
Indices: 2137273--2137304 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
2137263 CATAATATAA
2137273 TAAATT-CAAG-TAGAT
1 TAAATTGCAAGATAGAT
2137288 TAAATTGCAAGATAGAT
1 TAAATTGCAAGATAGAT
2137305 AAAAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (17 bp):
TAAATTGCAAGATAGAT
Found at i:2137472 original size:31 final size:31
Alignment explanation
Indices: 2137418--2137476 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
2137408 ATATTTTATT
*
2137418 TATATTTTTTATCTTGATATTTATTAAAAATA
1 TATATGTTTTATCTTGATATTTA-TAAAAATA
*
2137450 TATATGTTTTAT-TTTATATTTATAAAA
1 TATATGTTTTATCTTGATATTTATAAAA
2137477 TTAATATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 9 0.36
32 11 0.44
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (31 bp):
TATATGTTTTATCTTGATATTTATAAAAATA
Found at i:2138022 original size:26 final size:27
Alignment explanation
Indices: 2137986--2138046 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
2137976 GTCCAACAAT
2137986 TATTTATATTTGTATTATAA-AAAATA
1 TATTTATATTTGTATTATAATAAAATA
* *
2138012 TATTTATATTTGTATTTTAATTTAAATA
1 TATTTATATTTGTATTATAA-TAAAATA
2138040 TATTTAT
1 TATTTAT
2138047 CATTAATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 19 0.61
28 12 0.39
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (27 bp):
TATTTATATTTGTATTATAATAAAATA
Found at i:2138965 original size:25 final size:25
Alignment explanation
Indices: 2138937--2138986 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
2138927 TAACTCAGGG
*
2138937 TGACCACATCTTAATTAAATGAAAA
1 TGACCACATCTTAATTAAATAAAAA
2138962 TGACCACATCTTAATTAAATAAAAA
1 TGACCACATCTTAATTAAATAAAAA
2138987 CGAAAGTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.50, C:0.16, G:0.06, T:0.28
Consensus pattern (25 bp):
TGACCACATCTTAATTAAATAAAAA
Found at i:2142714 original size:133 final size:133
Alignment explanation
Indices: 2142470--2142737 Score: 410
Period size: 133 Copynumber: 2.0 Consensus size: 133
2142460 AGTTCTTTTA
* * * * *
2142470 AAAAAAAGTCATATATTCAAAGCATGACCTTGATCGAGTATTTGGCAGTTTGGTGTTTGTTCTAA
1 AAAAAAAGTCATATATTCAAAACATGACCTTGATCGAGTATTTGGCAATTCGGTGTTTGCTCCAA
* * *
2142535 TGTGATTGTCAGGTCAAAGATATTGTGATGAGTTGAACCCTCTAATTAGTCCAATGAAGGCTAAT
66 TGTGATTGTCAAGTCAAAGACATTGTAATGAGTTGAACCCTCTAATTAGTCCAATGAAGGCTAAT
2142600 GTC
131 GTC
* *
2142603 AAAAAAAGTCATATATTCAAAACATGACCTTGATCGGGTATTTGGCAATTCGGTGTTTGCTCCAC
1 AAAAAAAGTCATATATTCAAAACATGACCTTGATCGAGTATTTGGCAATTCGGTGTTTGCTCCAA
* * * *
2142668 TGTGATTGTCAAGTCAAAGACATTGTAATGAGTTGAACCGTTTAATTAGTCTAATTAAGGCTAAT
66 TGTGATTGTCAAGTCAAAGACATTGTAATGAGTTGAACCCTCTAATTAGTCCAATGAAGGCTAAT
2142733 GTC
131 GTC
2142736 AA
1 AA
2142738 TAAAGTTGAA
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 121 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (133 bp):
AAAAAAAGTCATATATTCAAAACATGACCTTGATCGAGTATTTGGCAATTCGGTGTTTGCTCCAA
TGTGATTGTCAAGTCAAAGACATTGTAATGAGTTGAACCCTCTAATTAGTCCAATGAAGGCTAAT
GTC
Found at i:2145705 original size:54 final size:54
Alignment explanation
Indices: 2145640--2145794 Score: 220
Period size: 54 Copynumber: 2.9 Consensus size: 54
2145630 AGAAATCCGA
* *
2145640 GCAGAAGCCACATGAAAGGATGAATGTGTTGTCAAATATTTTACGAACATCTGG
1 GCAGAAACCACATGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGG
* * * **
2145694 GCAGAAACCACAGGAAATGATGAATGTGTTGTTAAATGTTTTACGAACATCTTT
1 GCAGAAACCACATGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGG
* * *
2145748 GCAGAAACCACATGAAAGAATGAATGTATTGCCAAATGTTTTACGAA
1 GCAGAAACCACATGAAAGGATGAATGTGTTGTCAAATGTTTTACGAA
2145795 TCAGTTATGG
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.27
Consensus pattern (54 bp):
GCAGAAACCACATGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGG
Found at i:2146186 original size:22 final size:22
Alignment explanation
Indices: 2146157--2146279 Score: 138
Period size: 22 Copynumber: 5.6 Consensus size: 22
2146147 ACATCTACAT
*
2146157 TCTTCAAAGATGATAAATTATC
1 TCTTCAAAGATGATAGATTATC
* * * *
2146179 ACTTCAAAGATGATATATTCTT
1 TCTTCAAAGATGATAGATTATC
* * *
2146201 TCTTCAAAGATAATAGATTCTT
1 TCTTCAAAGATGATAGATTATC
* *
2146223 TCTTCAAAAATGATAGATTTTC
1 TCTTCAAAGATGATAGATTATC
*
2146245 TCTTCAAAGATGATAGATTTTC
1 TCTTCAAAGATGATAGATTATC
*
2146267 TTTTCAAAGATGA
1 TCTTCAAAGATGA
2146280 AAAATTAATT
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 88 1.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.40
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTATC
Found at i:2147148 original size:116 final size:116
Alignment explanation
Indices: 2146934--2147224 Score: 413
Period size: 116 Copynumber: 2.5 Consensus size: 116
2146924 CTATTTCTCA
* * * * *
2146934 CATCTGTAAGACCTACAGTGCATGATGTTTTTAA-AGCCTCCGGGTCATCCATAAGACCTACAGT
1 CATCTGTAAGACCTACAGTGCAAGATG---ATAAGA-CCTCAGGGCCATCCATAAGACCTACAAT
* * *
2146998 GCAGGATGTTTTCAAAAAGCCTTTAGGAGCTTTTTGATATATAAAGCCTCCGGGT
62 GCAAGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATATAAAACCTCCGGGT
* *
2147053 CATTTGTAAGACCTACAGTGCAAGATGATAAGACCTTAGGGCCATCCATAAGACCTACAATGCAA
1 CATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCTACAATGCAA
* * * *
2147118 GATGTTTTCAAAAAGCCTTCGGGAGTTTTTTGATATTTAAAACCTCTGGGT
66 GATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATATAAAACCTCCGGGT
2147169 CATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCT
1 CATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCT
2147225 CAGGGCCATC
Statistics
Matches: 155, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
116 129 0.83
117 1 0.01
119 25 0.16
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (116 bp):
CATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGACCTACAATGCAA
GATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATATAAAACCTCCGGGT
Found at i:2147221 original size:20 final size:20
Alignment explanation
Indices: 2147196--2147244 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
2147186 GTGCAAGATG
2147196 ATAAGACCTCAGGGCCATCC
1 ATAAGACCTCAGGGCCATCC
2147216 ATAAGACCTCAGGGCCATCC
1 ATAAGACCTCAGGGCCATCC
2147236 ATAAGACCT
1 ATAAGACCT
2147245 ATAGTGCAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.33, G:0.18, T:0.16
Consensus pattern (20 bp):
ATAAGACCTCAGGGCCATCC
Found at i:2147324 original size:136 final size:136
Alignment explanation
Indices: 2147080--2147361 Score: 413
Period size: 136 Copynumber: 2.1 Consensus size: 136
2147070 GTGCAAGATG
* * *
2147080 ATAAGACCTTAGGGCCATCCATAAGACCTACAATGCAAGATGTTTTCAAAAAGCCTTCGGGAGTT
1 ATAAGACCTCAGGGCCATCCATAAGACCTACAATGCAAGATGTTTTCAAAAAGCCTTCAGGAGCT
* *
2147145 TTTTGATATTTAAAACCTCTGGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGG
66 TTTTGATATTTAAAACCTCTGGGTCATCTGTAAGACATACAGTGCAACATGATAAGACCTCAGGG
2147210 CCATCC
131 CCATCC
* * * * * *
2147216 ATAAGACCTCAGGGCCATCCATAAGACCTATAGTGCAGGATGTTTTCAAAAAGTCTTTAGTAGCT
1 ATAAGACCTCAGGGCCATCCATAAGACCTACAATGCAAGATGTTTTCAAAAAGCCTTCAGGAGCT
* **
2147281 TTTTGGTATTTAAAGTCT-TCGGGTCATCTGTAAGACATACAGTGCAACATGATAAGACCTCAGG
66 TTTTGATATTTAAAACCTCT-GGGTCATCTGTAAGACATACAGTGCAACATGATAAGACCTCAGG
*
2147345 GCCATTC
130 GCCATCC
2147352 ATAAGACCTC
1 ATAAGACCTC
2147362 TAGGCATAAT
Statistics
Matches: 130, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
135 1 0.01
136 129 0.99
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (136 bp):
ATAAGACCTCAGGGCCATCCATAAGACCTACAATGCAAGATGTTTTCAAAAAGCCTTCAGGAGCT
TTTTGATATTTAAAACCTCTGGGTCATCTGTAAGACATACAGTGCAACATGATAAGACCTCAGGG
CCATCC
Found at i:2147496 original size:3 final size:3
Alignment explanation
Indices: 2147490--2147522 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
2147480 CATTTTTTTC
*
2147490 ATT ATT ATT ATT ATT ATT ATT A-A ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
2147523 CATGCCAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 1 0.04
3 26 0.96
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:2148507 original size:12 final size:13
Alignment explanation
Indices: 2148480--2148507 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2148470 TTTATTTACG
2148480 TTTTAATTCTGTT
1 TTTTAATTCTGTT
2148493 TTTTAATTCTGTT
1 TTTTAATTCTGTT
2148506 TT
1 TT
2148508 ATTATAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (13 bp):
TTTTAATTCTGTT
Found at i:2148547 original size:15 final size:15
Alignment explanation
Indices: 2148527--2148557 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
2148517 TAGTCATTGC
2148527 AATAAATTTTCATAT
1 AATAAATTTTCATAT
2148542 AATAAATTTTCATAT
1 AATAAATTTTCATAT
2148557 A
1 A
2148558 TTTTAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (15 bp):
AATAAATTTTCATAT
Found at i:2151374 original size:45 final size:45
Alignment explanation
Indices: 2151322--2151407 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
2151312 TTTTTCTGGA
* ** * *
2151322 TTTTTAACA-TATTTGATTGGTTCTGCTCTTTTTCCTTTATCCCCT
1 TTTTTAACAGT-TTTGATAGGTTCCACTCCTTTGCCTTTATCCCCT
2151367 TTTTTAACAGTTTTGATAGGTTCCACTCCTTTGCCTTTATC
1 TTTTTAACAGTTTTGATAGGTTCCACTCCTTTGCCTTTATC
2151408 TGAGGAGCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
45 34 0.97
46 1 0.03
ACGTcount: A:0.15, C:0.22, G:0.10, T:0.52
Consensus pattern (45 bp):
TTTTTAACAGTTTTGATAGGTTCCACTCCTTTGCCTTTATCCCCT
Found at i:2154778 original size:15 final size:15
Alignment explanation
Indices: 2154758--2154792 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
2154748 GTCTATTAAA
2154758 TAAGTTTTATTTCAT
1 TAAGTTTTATTTCAT
2154773 TAAGTTTTATTTCAT
1 TAAGTTTTATTTCAT
2154788 TAAGT
1 TAAGT
2154793 AACCAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.57
Consensus pattern (15 bp):
TAAGTTTTATTTCAT
Found at i:2161787 original size:123 final size:122
Alignment explanation
Indices: 2161568--2161814 Score: 361
Period size: 123 Copynumber: 2.0 Consensus size: 122
2161558 AACGCATCTA
* * * *
2161568 GTAAAATTATATCATACTCCAGTTCTTCCCCAATATTCTAGCCCAAATCCTTTCTTCAGCTGAAT
1 GTAAAAATATAGCATACTCCAGTTCTTCCCCAATATTCTAGCCCAAATCCTTTCCTCAGCGGAAT
* **
2161633 CAATAGTTAAATCCTTTTTCTATACTACTCTTCAAGGTGAAGCTATCAAATATACCAT
66 CAATAGTTAAATCATTTTAATATACTACTCTTCAAGGTGAAGCTATCAAA-ATACCAT
*
2161691 GTAAAAATATAGCATACTCCAGTTCTTCTCCAATATTCTAGCCCAAATCCTTTCCTCAGCCGGAA
1 GTAAAAATATAGCATACTCCAGTTCTTCCCCAATATTCTAGCCCAAATCCTTTCCTCAG-CGGAA
* * * *
2161756 -CAATAGTTAAATCATTTTAATATATTACTCTTCGAGGTGAAGCTCTCGAAATACCAT
65 TCAATAGTTAAATCATTTTAATATACTACTCTTCAAGGTGAAGCTATCAAAATACCAT
2161813 GT
1 GT
2161815 CCACTAGTCT
Statistics
Matches: 111, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
122 9 0.08
123 98 0.88
124 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (122 bp):
GTAAAAATATAGCATACTCCAGTTCTTCCCCAATATTCTAGCCCAAATCCTTTCCTCAGCGGAAT
CAATAGTTAAATCATTTTAATATACTACTCTTCAAGGTGAAGCTATCAAAATACCAT
Found at i:2164068 original size:13 final size:14
Alignment explanation
Indices: 2164043--2164072 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
2164033 AAACAATAAC
2164043 AAAATTAACAGGAA
1 AAAATTAACAGGAA
2164057 AAAATTAA-AGGAA
1 AAAATTAACAGGAA
2164070 AAA
1 AAA
2164073 GAAAATGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.70, C:0.03, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAATTAACAGGAA
Found at i:2165009 original size:13 final size:14
Alignment explanation
Indices: 2164982--2165013 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
2164972 AAAACAATAA
2164982 AAAAAATTAACAGG
1 AAAAAATTAACAGG
2164996 AAAAAATTAA-AGG
1 AAAAAATTAACAGG
2165009 AAAAA
1 AAAAA
2165014 GAAAATAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.72, C:0.03, G:0.12, T:0.12
Consensus pattern (14 bp):
AAAAAATTAACAGG
Found at i:2165726 original size:946 final size:939
Alignment explanation
Indices: 2163710--2166349 Score: 4577
Period size: 946 Copynumber: 2.8 Consensus size: 939
2163700 TTAACAGAAA
* *
2163710 AGAGAGAAAACAAATCAAAACTTGTTGTGCATAACATAATTCTTCCTTTCTGTTAGGCGATCCAG
1 AGAGAGAAAACAAATCAAAACTTGTTGTGCTTAACACAATTCTTCCTTTCTGTTAGGCGATCCAG
* *
2163775 AAAATATAAAAGAATTAATGTAAAATATACGCTAACTCAGGTCTCAATATGTAGTT-TTTTGTCT
66 AAAATATAAAAGAATTAATGTAAAATATACGCTAACTCAAGTCTCAATATGTAGTTCATTT-TCT
2163839 TCCTTTTTCTGTTTCTGAACACCAAAATTTTCTTAACCCGGATAGAAAA-TAGAAGAAAATAATA
130 TCCTTTTTCTGTTTCTGAACACCAAAATTTTCTTAACCCGGATAGAAAACT-GAAGAAAA-AATA
* *
2163903 TGTATAAAAACCAGTGGTGCTTCACAAGGCTCTTCCGTTTTTGCTAGTGTATGATCGATAATATT
193 TGTATAAAAACCAGTGGTGCTTCACAAGGCTCTTCCTTTTTTGCTAGTTTATGATCGATAATATT
*
2163968 TTTTAAAAAATGAAGTAAAATCCCAAAGTATCATTTTCCTGTTTCTGACCAACAAAATCTTCTGA
258 TTTTAAAAAATGAAGTAAAATCCCAAAGTATCATTTTCCTGTTTCTTACCAACAAAATCTTCTGA
*
2164033 AAACAATAACAAAATTAACAGGAAAAAATTAAAGGAAAAAGAAAATGAAGATATCGATCAAAACC
323 AAACAATAACAAAATTAACAGGAAAAAATTAAAGGAAAAAGAAAATAAAGATATCGATCAAAACC
* *
2164098 TATTGTGCTTGAGGTGACTCTTCCTTTTTACCTGTCATTTTCTGAT-AAAAAATAATGTAAAATA
388 TATTGTGCTTGAGGTGGCTCTTCCTTTTTACCCGTCATTTTCTGATAAAAAAATAATGTAAAATA
*
2164162 TCCATTAAATCACATTATAGTTTTTAAAACATATTCTGTTTCTGAACACCAAATTCTCCTAAAAC
453 TCCATTAAATCACATTGTAGTTTTTAAAACATATTCTGTTTCTGAACACCAAATTCTCCTAAAAC
2164227 CGAATTAGGATAAAAGAGAAAATCAAACCAGCTGTGTTTTAGACGGATCTTCCTTTTTGCAAGCT
518 CGAATTAGGATAAAAGAGAAAATCAAACCAGCTGTGTTTTAGACGGATCTTCCTTTTTGCAAGCT
* * *
2164292 ATTTTTTGAAAATAAAAGAAAAACAAAGTAAAATCTCCATTAAAAATACAAAATTTTGCTACATT
583 ATTTTCTGAAAATAAAAGAAAAACGAAGTAAAATCTCCATTAAAAATACAAAATGTTGCTAC-TT
2164357 TTCTGCTTCTTGAGAATGAACATCAAAGCCTTGTGTAAACCATCTTGAAATTCAACCGAAAACGA
647 TTCTGCTTCTTGAGAATGAACATCAAAGCCTTGTGTAAACCATCTTGAAATTCAACCGAAAACGA
2164422 AGAAAAATCAGTAAAATCATGTTGTGATTCATCCTTTTTGGTAGCCATAATAATCCTTGATCTTT
712 AGAAAAATCAGTAAAATCATGTTGTGATTCATCCTTTTTGGTAGCCATAATAATCCTTGATCTTT
* * *
2164487 CGGAATTCAAAAAATTCACATCCCAAACGGATCACAAAATCAACAAACAGCACCGACCTTTCACT
777 CGGAATTAAAAAAAATCACATCCCAAACGAATCACAAAATCAACAAACAGCACCGACCTTTCACT
2164552 CATCAATATCGGTAATGCCGTTCATTCACAACATTTAAACAAGCAAACACTTAGATTCAAACCGA
842 CATCAATATCGGTAATGCCGTTCATTCACAACATTTAAACAAGCAAACACTTAGATTCAAACCGA
*
2164617 AATAACCCTTTGAAACTAACATAGTGTGAAAAG
907 AATAACCCTTTGAAACGAACATAGTGTGAAAAG
* * * *
2164650 AGAGAGAAAACAAATCAAAACTTATTGTCCTTAACACAATTCTTCCTTTCTGTTAGGCGATGCAA
1 AGAGAGAAAACAAATCAAAACTTGTTGTGCTTAACACAATTCTTCCTTTCTGTTAGGCGATCCAG
* *
2164715 AAAATGTAAGAGAATTAATGTAAAATATACGCTAACTCAAGTCTCAATATGTAGTTCATTTTCTT
66 AAAATATAAAAGAATTAATGTAAAATATACGCTAACTCAAGTCTCAATATGTAGTTCATTTTCTT
*
2164780 CCTTTTTCTGTTTCTGAACACCAAAATTTTCTTAACCCAGATAGAAAACTGAAGAAAAAGATATG
131 CCTTTTTCTGTTTCTGAACACCAAAATTTTCTTAACCCGGATAGAAAACTGAAGAAAAA-ATATG
* *
2164845 TATAAAAACCAGTGGTGTTTCACAAGGCTCTTCCTTTTTTGATAGTTTATGATCGATAATATTTT
195 TATAAAAACCAGTGGTGCTTCACAAGGCTCTTCCTTTTTTGCTAGTTTATGATCGATAATATTTT
* * *
2164910 TTAAAAAATGAAGTAAAAACCCAAAGTATCATTTTCCGGTTTCTTACCAATAAAATCTTCTGAAA
260 TTAAAAAATGAAGTAAAATCCCAAAGTATCATTTTCCTGTTTCTTACCAACAAAATCTTCTGAAA
*
2164975 ACAATAAAAAAAATTAACAGGAAAAAATTAAAGGAAAAAGAAAATAAAGATATCGATCAAAACCT
325 ACAAT-AACAAAATTAACAGGAAAAAATTAAAGGAAAAAGAAAATAAAGATATCGATCAAAACCT
* * *
2165040 ATTGTGCTCGAGGTGGCTATTCTTTTTTACCCGTCATTTTCTGATAAAAAAATAATGTAAAATAT
389 ATTGTGCTTGAGGTGGCTCTTCCTTTTTACCCGTCATTTTCTGATAAAAAAATAATGTAAAATAT
*
2165105 CCATTAAATCACATTGTAGTTTTTAAAACATATTCTGTTTCTAAACACCAAATTCTCCTAAAACC
454 CCATTAAATCACATTGTAGTTTTTAAAACATATTCTGTTTCTGAACACCAAATTCTCCTAAAACC
* * * * *
2165170 AAATTAGGATAAAAGAGAAAATCAAACCAACTGTGTTTTAGACGGGTCTTCCTTTTTGTAAGTTA
519 GAATTAGGATAAAAGAGAAAATCAAACCAGCTGTGTTTTAGACGGATCTTCCTTTTTGCAAGCTA
* * *
2165235 TTTTCTGGAAAAAAAAAAGAAAAACGAAGTAAAACCTCCATTAAAAATACAAAATGTTGCTATCG
584 TTTTCT-G-AAAATAAAAGAAAAACGAAGTAAAATCTCCATTAAAAATACAAAATGTTGCTA-CT
2165300 TTTCTGCTTCTTGAGAATGAACATCAAAGCCTTGTGTAAACCATCTTGAAATTCAACCGAAAACG
646 TTTCTGCTTCTTGAGAATGAACATCAAAGCCTTGTGTAAACCATCTTGAAATTCAACCGAAAACG
* *
2165365 AAGAAATATCAGTAAAATCCTGTTGTGATTCATCCTTTTTGGTAGCCATAATAATCCTTGATCTT
711 AAGAAAAATCAGTAAAATCATGTTGTGATTCATCCTTTTTGGTAGCCATAATAATCCTTGATCTT
2165430 TCGGAATTAAAAAAAAATCACATCCCAAACGAATCACAAAATCAACAAACAGCACCGACCTTTCA
776 TCGGAATT-AAAAAAAATCACATCCCAAACGAATCACAAAATCAACAAACAGCACCGACCTTTCA
*
2165495 CTCATCAATCTCGGTAAATGCC-TCTCATTCACAACATTTAAACAAGCAAACACTTAGATTCAAA
840 CTCATCAATATCGGT-AATGCCGT-TCATTCACAACATTTAAACAAGCAAACACTTAGATTCAAA
2165559 CCGAAATAACCCTTTGAAACGAACATAGTGTGAAAAG
903 CCGAAATAACCCTTTGAAACGAACATAGTGTGAAAAG
* * *
2165596 AGAGAGAAAACAAATCAAAACTTGTTGTGTTTAACACAATTCTTACTTTCTGTTAGGTGATCCAG
1 AGAGAGAAAACAAATCAAAACTTGTTGTGCTTAACACAATTCTTCCTTTCTGTTAGGCGATCCAG
* *
2165661 AAAATATAAAAGAATTAATATAAAGTATACGCTAACTCAAGTCTCAATATGTAGTTCATTTTCTT
66 AAAATATAAAAGAATTAATGTAAAATATACGCTAACTCAAGTCTCAATATGTAGTTCATTTTCTT
*
2165726 CCTTTTTCTGTTTCTGAACACCAAAATTTTCTTAACCCGGATAGAAAACAGAAGAAAAATATATG
131 CCTTTTTCTGTTTCTGAACACCAAAATTTTCTTAACCCGGATAGAAAACTGAAGAAAAA-ATATG
*
2165791 TATAAAAACCAGTGGTGCTTCACAAGGCTCTTCCTTTTTTGCTAGTTTATGATCAATAATATTTT
195 TATAAAAACCAGTGGTGCTTCACAAGGCTCTTCCTTTTTTGCTAGTTTATGATCGATAATATTTT
*
2165856 TTAAAATATGAAGTAAAATCCCAAAGTATCATTTTCCTGTTTCTTACCAACAAAATCTTCTGAAA
260 TTAAAAAATGAAGTAAAATCCCAAAGTATCATTTTCCTGTTTCTTACCAACAAAATCTTCTGAAA
2165921 ACAATAACAAAATTAACAGGAAAAAATTAAAGGAAAAAGAAAATAAAGATATCGATCAAAACCTA
325 ACAATAACAAAATTAACAGGAAAAAATTAAAGGAAAAAGAAAATAAAGATATCGATCAAAACCTA
*
2165986 TTGTGCTTGAGGTGGCTCTTCCTTTTTACCCTTCATTTTCTGATAAAAAAATAATGTAAAATATC
390 TTGTGCTTGAGGTGGCTCTTCCTTTTTACCCGTCATTTTCTGATAAAAAAATAATGTAAAATATC
2166051 CATTAAATCACATTGTAGTTTTTAAAACATATTCTGTTTCTGAACACCAAATTCTCCTAAAACCG
455 CATTAAATCACATTGTAGTTTTTAAAACATATTCTGTTTCTGAACACCAAATTCTCCTAAAACCG
2166116 AATTAGGATAAAAGAGAAAATCAAACCAGCTGTGTTTTAGACGGATCTTCCTTTTTGCAAGCTAT
520 AATTAGGATAAAAGAGAAAATCAAACCAGCTGTGTTTTAGACGGATCTTCCTTTTTGCAAGCTAT
* * *
2166181 TTTCTGAAAATAAAAGAAAAACGAAGTAAAATCTTCATTAAAAATAAAAAATGTTGTTACCTTTT
585 TTTCTGAAAATAAAAGAAAAACGAAGTAAAATCTCCATTAAAAATACAAAATGTTGCTA-CTTTT
*
2166246 CTGCTTCTTGAGAATGAACATCAAAGCCTTGTGTAAAACATCTTGAAATTCAACCGAAAACGAAG
649 CTGCTTCTTGAGAATGAACATCAAAGCCTTGTGTAAACCATCTTGAAATTCAACCGAAAACGAAG
* *
2166311 AAAGATCAGTAAAAACATGTTGTGATTCATCCTTTTTGG
714 AAAAATCAGTAAAATCATGTTGTGATTCATCCTTTTTGG
2166350 CCGGGGAAAA
Statistics
Matches: 1600, Mismatches: 89, Indels: 19
0.94 0.05 0.01
Matches are distributed among these distances:
939 1 0.00
940 303 0.19
941 101 0.06
942 147 0.09
943 153 0.10
944 186 0.12
945 318 0.20
946 391 0.24
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.31
Consensus pattern (939 bp):
AGAGAGAAAACAAATCAAAACTTGTTGTGCTTAACACAATTCTTCCTTTCTGTTAGGCGATCCAG
AAAATATAAAAGAATTAATGTAAAATATACGCTAACTCAAGTCTCAATATGTAGTTCATTTTCTT
CCTTTTTCTGTTTCTGAACACCAAAATTTTCTTAACCCGGATAGAAAACTGAAGAAAAAATATGT
ATAAAAACCAGTGGTGCTTCACAAGGCTCTTCCTTTTTTGCTAGTTTATGATCGATAATATTTTT
TAAAAAATGAAGTAAAATCCCAAAGTATCATTTTCCTGTTTCTTACCAACAAAATCTTCTGAAAA
CAATAACAAAATTAACAGGAAAAAATTAAAGGAAAAAGAAAATAAAGATATCGATCAAAACCTAT
TGTGCTTGAGGTGGCTCTTCCTTTTTACCCGTCATTTTCTGATAAAAAAATAATGTAAAATATCC
ATTAAATCACATTGTAGTTTTTAAAACATATTCTGTTTCTGAACACCAAATTCTCCTAAAACCGA
ATTAGGATAAAAGAGAAAATCAAACCAGCTGTGTTTTAGACGGATCTTCCTTTTTGCAAGCTATT
TTCTGAAAATAAAAGAAAAACGAAGTAAAATCTCCATTAAAAATACAAAATGTTGCTACTTTTCT
GCTTCTTGAGAATGAACATCAAAGCCTTGTGTAAACCATCTTGAAATTCAACCGAAAACGAAGAA
AAATCAGTAAAATCATGTTGTGATTCATCCTTTTTGGTAGCCATAATAATCCTTGATCTTTCGGA
ATTAAAAAAAATCACATCCCAAACGAATCACAAAATCAACAAACAGCACCGACCTTTCACTCATC
AATATCGGTAATGCCGTTCATTCACAACATTTAAACAAGCAAACACTTAGATTCAAACCGAAATA
ACCCTTTGAAACGAACATAGTGTGAAAAG
Found at i:2165954 original size:13 final size:14
Alignment explanation
Indices: 2165929--2165958 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
2165919 AAACAATAAC
2165929 AAAATTAACAGGAA
1 AAAATTAACAGGAA
2165943 AAAATTAA-AGGAA
1 AAAATTAACAGGAA
2165956 AAA
1 AAA
2165959 GAAAATAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.70, C:0.03, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAATTAACAGGAA
Found at i:2167570 original size:182 final size:182
Alignment explanation
Indices: 2167263--2167900 Score: 1080
Period size: 182 Copynumber: 3.5 Consensus size: 182
2167253 ACTTTTTTAC
*
2167263 TACCGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGA
** *
2167328 TACATTTTTATAAAGTATCGACACTTTATTGATGCTATAACTTCTTCTCTTTTAAATTCCAAAAG
66 TACATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAG
* * * *
2167393 TGTCTATAGTTATAATAAAGTATCGACATTTTCAACATATCCGGTAGCTCTT
131 TGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTT
* * *
2167445 TACCGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTATTATATTGTTATGGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGA
*
2167510 TATATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAG
66 TACATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAG
*
2167575 TGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCTGGTAGCGCTT
131 TGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTT
*
2167627 TACCGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTTTATTGTTATGGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGA
*
2167692 TACATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAG
66 TACATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAG
*
2167757 TGTCGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCGCTT
131 TGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTT
* ** *
2167809 TACCTGTTTTGTCATTTATAGACCGGTTTTATCAT-TTGTTTACCTGTTATATTGTTATGGATCG
1 TACCGGTTTTGTCATTTCGAGACCGATTTTATCATATT-TTTACCTGTTATATTGTTATGGATCG
2167873 ATACATTTTTATAAAGTATCGACACTTT
65 ATACATTTTTATAAAGTATCGACACTTT
2167901 CAATATATCC
Statistics
Matches: 431, Mismatches: 24, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
181 2 0.00
182 429 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (182 bp):
TACCGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGA
TACATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCCAAAAG
TGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCGCTT
Found at i:2167969 original size:112 final size:112
Alignment explanation
Indices: 2167771--2168234 Score: 766
Period size: 112 Copynumber: 4.1 Consensus size: 112
2167761 GATACTTATA
* *
2167771 ATAAAGTATCGACACTATCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* * * *
2167836 TTTATCATTTGTTTACCTGTTATATTGTTATGGATCGATACATTTTT
66 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCAATACATTTTT
*
2167883 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGAT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
*
2167948 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTT
66 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCAATACATTTTT
*
2167995 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTTTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
*
2168060 TTTGTCATTTTTTTTACATGTTATATTGTTATGGATCAATATATTTTT
66 TTTGTCA-TTTTTTTACATGTTATATTGTTATGGATCAATACATTTTT
* * * * *
2168108 GTAAAGTATCAACACTTTCAATATATCCGGTAGCGCTTTACATGTTTTGTCATTTATAAATCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* *
2168173 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCAATATATTTTT
66 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCAATACATTTTT
2168220 ATAAAGTATCGACAC
1 ATAAAGTATCGACAC
2168235 AAACCGACAA
Statistics
Matches: 332, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
112 228 0.69
113 104 0.31
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACATGTTATATTGTTATGGATCAATACATTTTT
Found at i:2168161 original size:225 final size:224
Alignment explanation
Indices: 2167771--2168234 Score: 766
Period size: 225 Copynumber: 2.1 Consensus size: 224
2167761 GATACTTATA
2167771 ATAAAGTATCGACACTATCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTATCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* * *
2167836 TTTATCATTTGTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
66 TTTATCATTTGTTTACATGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCAACACTTT
* *
2167901 CAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGATTTTGTCATTTTTTTACAT
131 CAATATATCCGGTAGCGCTTTACATGTTTTGTCATTTATAAACCGATTTTGTCATTTTTTTACAT
*
2167966 GTTATATTGTTATGGATCGATACATTTTT
196 GTTATATTGTTATGGATCAATACATTTTT
* * *
2167995 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTTTCATTTATAGACCGGT
1 ATAAAGTATCGACACTATCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* * * *
2168060 TTTGTCATTTTTTTTACATGTTATATTGTTATGGATCAATATATTTTTGTAAAGTATCAACACTT
66 TTTATCA-TTTGTTTACATGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCAACACTT
* * *
2168125 TCAATATATCCGGTAGCGCTTTACATGTTTTGTCATTTATAAATCGGTTTTGTCATTTTTTTACC
130 TCAATATATCCGGTAGCGCTTTACATGTTTTGTCATTTATAAACCGATTTTGTCATTTTTTTACA
*
2168190 TGTTATATTGTTATGGATCAATATATTTTT
195 TGTTATATTGTTATGGATCAATACATTTTT
2168220 ATAAAGTATCGACAC
1 ATAAAGTATCGACAC
2168235 AAACCGACAA
Statistics
Matches: 222, Mismatches: 17, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
224 68 0.31
225 154 0.69
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (224 bp):
ATAAAGTATCGACACTATCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTATCATTTGTTTACATGTTATATTGTTATGGATCAATACATTTTTATAAAGTATCAACACTTT
CAATATATCCGGTAGCGCTTTACATGTTTTGTCATTTATAAACCGATTTTGTCATTTTTTTACAT
GTTATATTGTTATGGATCAATACATTTTT
Found at i:2170437 original size:14 final size:14
Alignment explanation
Indices: 2170418--2170458 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
2170408 TTTCTGTCTA
*
2170418 TATGCAGAGATTAT
1 TATGCAGGGATTAT
2170432 TATGCAGGGATTTAT
1 TATGCAGGGA-TTAT
2170447 TA-GCAGGGATTA
1 TATGCAGGGATTA
2170459 CTTCCTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 3 0.12
14 16 0.64
15 6 0.24
ACGTcount: A:0.32, C:0.07, G:0.27, T:0.34
Consensus pattern (14 bp):
TATGCAGGGATTAT
Found at i:2171944 original size:15 final size:15
Alignment explanation
Indices: 2171924--2171958 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
2171914 GTCTATTAAA
2171924 TAAGTTTTATTTCAT
1 TAAGTTTTATTTCAT
2171939 TAAGTTTTATTTCAT
1 TAAGTTTTATTTCAT
2171954 TAAGT
1 TAAGT
2171959 AACCAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.57
Consensus pattern (15 bp):
TAAGTTTTATTTCAT
Done.