Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007938.1 Hibiscus syriacus cultivar Beakdansim tig00110348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2808856
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 14
Found at i:707365 original size:19 final size:19
Alignment explanation
Indices: 707341--707377 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
707331 ACCTTACTAA
707341 CTCTTTTCATTTT-TTTCCT
1 CTCTTTT-ATTTTATTTCCT
707360 CTCTTTTATTTTATTTCC
1 CTCTTTTATTTTATTTCC
707378 ATCATCTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (19 bp):
CTCTTTTATTTTATTTCCT
Found at i:711993 original size:106 final size:106
Alignment explanation
Indices: 711863--713138 Score: 1964
Period size: 106 Copynumber: 12.0 Consensus size: 106
711853 ATATCGTGCC
* * * * *
711863 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACTAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
711928 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
711969 ACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
712034 AATTTCAAAGCCAATTTCAACTTCAC-GACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGG
* *
712075 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
712140 AATTTTAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
712181 ACTCAAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAATAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
712246 AATTTCAGAGCCAATTTTAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
712287 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
712352 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
712393 ACTCCAGATAACGCAAGTTCAAATTCACGACGAAGGGATCGCTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
712458 AATTTCAGAGCC-ATCTTCAACTTCATACCGAAGGATATTGG
66 AATTTCAGAGCCAAT-TTCAACTTCACAGCGAAGGATATTGG
* * *
712499 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
** * * *
712564 AATTTTGGAGCCAATTTTAACTTCACAGCGAAAGATATTGT
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
712605 ACTCCAGACAACGCAAGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
712670 AATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
712711 ACTCCAGACAACGCAAGTTCAACTTTACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
**
712776 AATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
712817 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
712882 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
712923 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * *
712988 AATTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTAG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
** * * * * * * *
713029 ACTAGAGACAACACATGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * *
713094 GATTCCAGAGCCAATTTCAACTTCA-TGACGGAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGG
713135 ACTC
1 ACTC
713139 GGAACAATGC
Statistics
Matches: 1079, Mismatches: 86, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
105 3 0.00
106 1073 0.99
107 3 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:713941 original size:37 final size:37
Alignment explanation
Indices: 713888--713992 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
713878 CCTTTTCGTC
*
713888 CTACTAGGATTCAAACTCCTAAAAATAGGATATAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* *
713925 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
** * *
713962 CTACTATTATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
713993 CCACAAACAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:714439 original size:23 final size:23
Alignment explanation
Indices: 714411--714457 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
714401 TATATATATA
714411 TATTTAATTAT-ATTTTATTT-ATT
1 TATTT-ATTATAATTTT-TTTCATT
714434 TATTTATTATAATTTTTTTCATT
1 TATTTATTATAATTTTTTTCATT
714457 T
1 T
714458 TTCTTTGCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (23 bp):
TATTTATTATAATTTTTTTCATT
Found at i:714496 original size:2 final size:2
Alignment explanation
Indices: 714489--714522 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
714479 ATTTTCCTAT
714489 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
714523 TATTATTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:714526 original size:8 final size:9
Alignment explanation
Indices: 714486--714528 Score: 61
Period size: 10 Copynumber: 4.7 Consensus size: 9
714476 ATTATTTTCC
714486 TATTATATA
1 TATTATATA
714495 TATATATATA
1 TAT-TATATA
714505 TATATATATA
1 TAT-TATATA
714515 TATTATAT-
1 TATTATATA
714523 TATTAT
1 TATTAT
714529 TTTTTTATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
8 6 0.18
9 8 0.24
10 19 0.58
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TATTATATA
Found at i:714739 original size:18 final size:16
Alignment explanation
Indices: 714716--714793 Score: 58
Period size: 17 Copynumber: 4.8 Consensus size: 16
714706 TATATTATAC
714716 ATATATTTTTATATTTTT
1 ATATATTTTT-TA-TTTT
714734 ATATATATTTTTATTTT
1 ATATAT-TTTTTATTTT
714751 AT-TA--TTTTA-TTT
1 ATATATTTTTTATTTT
714763 ATACTATTTATTTATTTT
1 ATA-TATTT-TTTATTTT
714781 CAT-TATGTTTTTA
1 -ATATAT-TTTTTA
714794 GTTTCTTTGC
Statistics
Matches: 51, Mismatches: 0, Indels: 19
0.73 0.00 0.27
Matches are distributed among these distances:
12 5 0.10
13 5 0.10
14 2 0.04
16 3 0.06
17 17 0.33
18 13 0.25
19 6 0.12
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (16 bp):
ATATATTTTTTATTTT
Found at i:714748 original size:26 final size:27
Alignment explanation
Indices: 714688--714775 Score: 71
Period size: 24 Copynumber: 3.4 Consensus size: 27
714678 TTATTATTGT
* * *
714688 TACTATTTAGTATT-TTATTATAT-TA
1 TACTATTTATTTTTATTATTTTATATA
*
714713 TAC-ATATATTTTTA-TATTTT-TATA
1 TACTATTTATTTTTATTATTTTATATA
* *
714737 TA-TATTTTTATTTTATTATTTTATTTA
1 TACTATTTAT-TTTTATTATTTTATATA
714764 TACTATTTATTT
1 TACTATTTATTT
714776 ATTTTCATTA
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
23 1 0.02
24 20 0.42
25 8 0.17
26 6 0.12
27 7 0.15
28 6 0.12
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TACTATTTATTTTTATTATTTTATATA
Found at i:714755 original size:20 final size:21
Alignment explanation
Indices: 714700--714755 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
714690 CTATTTAGTA
*
714700 TTTTATTATATTATACATATAT
1 TTTTATTTTATTATA-ATATAT
714722 TTTTATATTT-TTAT-ATATAT
1 TTTTAT-TTTATTATAATATAT
714742 TTTTATTTTATTAT
1 TTTTATTTTATTAT
714756 TTTATTTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
19 3 0.10
20 16 0.52
22 10 0.32
23 2 0.06
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTATTTTATTATAATATAT
Found at i:714758 original size:13 final size:14
Alignment explanation
Indices: 714705--714777 Score: 52
Period size: 13 Copynumber: 5.6 Consensus size: 14
714695 TAGTATTTTA
*
714705 TTATATTATACATATA
1 TTAT-TTATAC-TATT
714721 TT-TTTATA-T-TT
1 TTATTTATACTATT
*
714732 TTATATATA-T-TT
1 TTATTTATACTATT
*
714744 TTATTT-TATTATT
1 TTATTTATACTATT
714757 TTATTTATACTA-T
1 TTATTTATACTATT
714770 TTATTTAT
1 TTATTTAT
714778 TTTCATTATG
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
11 5 0.10
12 15 0.31
13 17 0.35
14 9 0.18
15 1 0.02
16 2 0.04
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTTATACTATT
Found at i:714792 original size:47 final size:47
Alignment explanation
Indices: 714698--714793 Score: 115
Period size: 47 Copynumber: 2.0 Consensus size: 47
714688 TACTATTTAG
*
714698 TATTTTATTATATTATACATATATTTTTATATTTTTATATATATTTT
1 TATTTTATTATATTATACATATATTTTTATATTTTCATATATATTTT
* ** *
714745 TATTTTATTATTTTATTTATACTATTTATT-TATTTTCAT-TATGTTTT
1 TATTTTATTATATTATACATA-TATTT-TTATATTTTCATATATATTTT
714792 TA
1 TA
714794 GTTTCTTTGC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
47 27 0.64
48 13 0.31
49 2 0.05
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (47 bp):
TATTTTATTATATTATACATATATTTTTATATTTTCATATATATTTT
Found at i:716735 original size:17 final size:18
Alignment explanation
Indices: 716713--716747 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
716703 AGGGGAAATG
716713 AGAATGAAATG-AATAGA
1 AGAATGAAATGAAATAGA
716730 AGAATGAAATGAAATAGA
1 AGAATGAAATGAAATAGA
716748 TAAAAGCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (18 bp):
AGAATGAAATGAAATAGA
Found at i:718035 original size:12 final size:12
Alignment explanation
Indices: 718018--718078 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
718008 AGATTATTTG
718018 TATATTATATAT
1 TATATTATATAT
718030 TATATTATATA-
1 TATATTATATAT
*
718041 TAGTATAATATAAT
1 TA-TATTATAT-AT
* * *
718055 TTTGTTGTATAT
1 TATATTATATAT
*
718067 TATAGTATATAT
1 TATATTATATAT
718079 ATAATATTTA
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
11 2 0.05
12 28 0.76
13 6 0.16
14 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (12 bp):
TATATTATATAT
Found at i:718282 original size:2 final size:2
Alignment explanation
Indices: 718271--718425 Score: 68
Period size: 2 Copynumber: 81.0 Consensus size: 2
718261 TTTTTTAATG
* *
718271 AT AT AGT AT AT AT AA AGT AT AT AGT AT AT AT TT GAT A- AT AT AT
1 AT AT A-T AT AT AT AT A-T AT AT A-T AT AT AT AT -AT AT AT AT AT
* * *
718314 -T AT AT AT AT A- AT AT -T AT AT -T GT AT AT -T AC ACT -T GA- AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT -AT AT
*
718351 AT AT AT A- AT AT AT -T AT AT AT AT AT AT A- AT AT -T A- AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
718388 AT GT -T AT AGT AT TT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
718426 TGTTATAGCG
Statistics
Matches: 118, Mismatches: 14, Indels: 42
0.68 0.08 0.24
Matches are distributed among these distances:
1 14 0.12
2 96 0.81
3 8 0.07
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.46
Consensus pattern (2 bp):
AT
Found at i:718317 original size:19 final size:19
Alignment explanation
Indices: 718289--718340 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
718279 TATATAAAGT
* *
718289 ATATAGTATATATTTGATA
1 ATATATTATATATTTAATA
*
718308 ATATATTATATATATAATA
1 ATATATTATATATTTAATA
* *
718327 TTATATTGTATATT
1 ATATATTATATATT
718341 ACACTTGAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (19 bp):
ATATATTATATATTTAATA
Found at i:718387 original size:35 final size:38
Alignment explanation
Indices: 718348--718419 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 38
718338 ATTACACTTG
*
718348 AAAATATATAATA-TA-TTATATATATATATA-ATATT
1 AAAATATATAATAGTATTTAAATATATATATATATATT
* *
718383 AAAATATGTTATAGTATTTAAATATATATATATATAT
1 AAAATATATAATAGTATTTAAATATATATATATATAT
718420 ATATATTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 11 0.35
36 2 0.06
37 14 0.45
38 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (38 bp):
AAAATATATAATAGTATTTAAATATATATATATATATT
Found at i:722340 original size:16 final size:16
Alignment explanation
Indices: 722319--722349 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
722309 GAGAGATTAA
*
722319 AGGAGGCAAATCCCAT
1 AGGAGGCAAACCCCAT
722335 AGGAGGCAAACCCCA
1 AGGAGGCAAACCCCA
722350 AAGAATAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.29, G:0.26, T:0.06
Consensus pattern (16 bp):
AGGAGGCAAACCCCAT
Found at i:727882 original size:16 final size:16
Alignment explanation
Indices: 727861--727905 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
727851 GGGTCTCCAA
727861 CGTTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
*
727877 CGTTTATGTTTGTGTT
1 CGTTTATGTTCGTGTT
727893 CGTTTATGTTCGT
1 CGTTTATGTTCGT
727906 TTATTTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.07, C:0.11, G:0.24, T:0.58
Consensus pattern (16 bp):
CGTTTATGTTCGTGTT
Found at i:733768 original size:9 final size:9
Alignment explanation
Indices: 733754--733909 Score: 77
Period size: 9 Copynumber: 16.4 Consensus size: 9
733744 TATTTGTTTC
733754 TTTTATTAT
1 TTTTATTAT
733763 TTTTATTAT
1 TTTTATTAT
733772 TTTCT-TTAAT
1 TTT-TATT-AT
*
733782 TTTT-TT-G
1 TTTTATTAT
733789 TTTTATTAT
1 TTTTATTAT
*
733798 TATTATTAT
1 TTTTATTAT
733807 TTATTATT-T
1 TT-TTATTAT
733816 ATTTTACCTTAT
1 -TTTTA--TTAT
* *
733828 TTTTCTTCT
1 TTTTATTAT
**
733837 TACTATATAT
1 TTTTAT-TAT
* *
733847 TTTTCTAAT
1 TTTTATTAT
733856 ATTTTATTAT
1 -TTTTATTAT
*
733866 ATATATATATAT
1 -T-TTTAT-TAT
733878 TATTTATTAT
1 T-TTTATTAT
*
733888 TATTATTAT
1 TTTTATTAT
*
733897 TATTATTAT
1 TTTTATTAT
733906 TTTT
1 TTTT
733910 CAAATATTTT
Statistics
Matches: 114, Mismatches: 20, Indels: 26
0.71 0.12 0.16
Matches are distributed among these distances:
7 4 0.04
8 2 0.02
9 57 0.50
10 31 0.27
11 16 0.14
12 4 0.04
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.69
Consensus pattern (9 bp):
TTTTATTAT
Found at i:733797 original size:3 final size:3
Alignment explanation
Indices: 733791--733906 Score: 69
Period size: 3 Copynumber: 36.7 Consensus size: 3
733781 TTTTTTTGTT
* * *
733791 TTA TTA TTA TTA TTA TTTA TTA TTTA TT- TTA CCTTA TTT TTC TTC TTA
1 TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA --TTA TTA TTA TTA TTA
* *
733839 CTA TATA TT- TT- TCTA ATA TT- TTA TTA TATA TATA TATA TTA TTTA
1 TTA T-TA TTA TTA T-TA TTA TTA TTA TTA T-TA T-TA T-TA TTA -TTA
733884 TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
733907 TTTCAAATAT
Statistics
Matches: 95, Mismatches: 7, Indels: 22
0.77 0.06 0.18
Matches are distributed among these distances:
2 7 0.07
3 62 0.65
4 23 0.24
5 3 0.03
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:733976 original size:14 final size:14
Alignment explanation
Indices: 733957--733990 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
733947 TCTTTATTTC
733957 TTTTTT-GTTTATAT
1 TTTTTTCGTTT-TAT
733971 TTTTTTCGTTTTAT
1 TTTTTTCGTTTTAT
733985 TTTTTT
1 TTTTTT
733991 ATTTTATTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.09, C:0.03, G:0.06, T:0.82
Consensus pattern (14 bp):
TTTTTTCGTTTTAT
Found at i:734003 original size:12 final size:12
Alignment explanation
Indices: 733988--734072 Score: 54
Period size: 12 Copynumber: 6.9 Consensus size: 12
733978 GTTTTATTTT
733988 TTTATTTTATTC
1 TTTATTTTATTC
734000 TTTA-TTTATCTC
1 TTTATTTTAT-TC
*
734012 TTT-TTTTATTT
1 TTTATTTTATTC
734023 TTTCA-TTTATT-
1 TTT-ATTTTATTC
734034 TTT-TTATTCATTC
1 TTTATT-TT-ATTC
*
734047 ATTTATTATTTTTC
1 -TTTATT-TTATTC
734061 TTTATCTTTATT
1 TTTAT-TTTATT
734073 TTATCTTGTT
Statistics
Matches: 59, Mismatches: 3, Indels: 21
0.71 0.04 0.25
Matches are distributed among these distances:
10 1 0.02
11 14 0.24
12 23 0.39
13 9 0.15
14 7 0.12
15 5 0.08
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTATTTTATTC
Found at i:734007 original size:16 final size:16
Alignment explanation
Indices: 733980--734088 Score: 59
Period size: 16 Copynumber: 6.7 Consensus size: 16
733970 TTTTTTTCGT
*
733980 TTTATTT-TTTTATTT
1 TTTATTTATTTTATTC
*
733995 TATTCTTTA-TTTATCTC
1 T-TTATTTATTTTAT-TC
*
734012 TTTTTTTATTTT-TTC
1 TTTATTTATTTTATTC
734027 ATTTATTT-TTTTATTC
1 -TTTATTTATTTTATTC
* *
734043 ATTCATTTATTATTTTTC
1 -TTTATTTATT-TTATTC
734061 TTTATCTTTATTTTA-TC
1 TTTA--TTTATTTTATTC
734078 TTGT-TTTATTT
1 TT-TATTTATTT
734089 ATGTATATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
15 14 0.19
16 33 0.44
17 14 0.19
18 8 0.11
19 6 0.08
ACGTcount: A:0.16, C:0.08, G:0.01, T:0.75
Consensus pattern (16 bp):
TTTATTTATTTTATTC
Found at i:734037 original size:20 final size:20
Alignment explanation
Indices: 734012--734059 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
734002 TATTTATCTC
**
734012 TTTTTTTATTTTTTCATTTA
1 TTTTTTTATTCATTCATTTA
734032 TTTTTTTATTCATTCATTTA
1 TTTTTTTATTCATTCATTTA
734052 TTATTTTT
1 TT-TTTTT
734060 CTTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTTATTCATTCATTTA
Found at i:734040 original size:36 final size:35
Alignment explanation
Indices: 733979--734059 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 35
733969 ATTTTTTTCG
* * *
733979 TTTTATTTTTTTATTTTATTCTTTATTTATCTCTTT
1 TTTTATTTTTTCATTTTATTCTTTATTCAT-TCATT
*
734015 TTTTATTTTTTCA-TTTATTTTTTTATTCATTCATT
1 TTTTATTTTTTCATTTTA-TTCTTTATTCATTCATT
*
734050 TATTATTTTT
1 TTTTATTTTT
734060 CTTTATCTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
35 17 0.44
36 22 0.56
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (35 bp):
TTTTATTTTTTCATTTTATTCTTTATTCATTCATT
Found at i:734231 original size:35 final size:31
Alignment explanation
Indices: 734169--734234 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 31
734159 ACTTACTTTA
*
734169 TCTTTTTATTATTTATTTCATCTATTTTTCT
1 TCTTTTTATTATTTATTTCATCCATTTTTCT
*
734200 TCTTTATTTTTATTTATTTTCATCACCATTTTTCT
1 TCTTT-TTATTATTTA-TTTCAT--CCATTTTTCT
734235 CTAACACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 5 0.17
32 9 0.31
33 6 0.21
35 9 0.31
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (31 bp):
TCTTTTTATTATTTATTTCATCCATTTTTCT
Found at i:744626 original size:5 final size:5
Alignment explanation
Indices: 744610--744656 Score: 60
Period size: 5 Copynumber: 9.4 Consensus size: 5
744600 TCCTAAGTCG
* *
744610 AAGAA AAAAA AAGAA AAGAA AA-AA GAGAA AAGAA AAGAAA AAGAA AA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAG-AA AAGAA AA
744657 AACATTTAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
4 3 0.08
5 28 0.78
6 5 0.14
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:744645 original size:24 final size:25
Alignment explanation
Indices: 744611--744658 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
744601 CCTAAGTCGA
744611 AGAAAAAAAAAG-AAAAGAAAAAAG
1 AGAAAAAAAAAGAAAAAGAAAAAAG
*
744635 AGAAAAGAAAAGAAAAAGAAAAAA
1 AGAAAAAAAAAGAAAAAGAAAAAA
744659 CATTTAGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (25 bp):
AGAAAAAAAAAGAAAAAGAAAAAAG
Found at i:744713 original size:55 final size:56
Alignment explanation
Indices: 744653--744770 Score: 157
Period size: 56 Copynumber: 2.1 Consensus size: 56
744643 AAAGAAAAAG
* * *
744653 AAAAAACATTTAGGGTGAAAACCCGAAAGGGCACCCTAAATTGATAAAAGAGTAAA
1 AAAAAACATTTACGATGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAGTAAA
* * * *
744709 AAAAAACGTTTACGATGAAAACTCGAAATGGCACCCTAAATTGAAAAAAAAG-AAA
1 AAAAAACATTTACGATGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAGTAAA
744764 AGAAAAA
1 A-AAAAA
744771 TAAGGTAGGT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 4 0.07
56 50 0.93
ACGTcount: A:0.54, C:0.14, G:0.17, T:0.15
Consensus pattern (56 bp):
AAAAAACATTTACGATGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAGTAAA
Found at i:745752 original size:124 final size:123
Alignment explanation
Indices: 745601--746028 Score: 553
Period size: 124 Copynumber: 3.5 Consensus size: 123
745591 AATTTACTCG
*
745601 AGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAATGGGT
1 AGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAAGCTCAACTTCACAACGAATGGG-
* ** * *
745666 CATCCACGATTTTAACTTCATAACGAAGGATATCGTGTCCACCAACAACATTCATCTTT
65 CATCCACGATTTCAACTTCACGACGAAGGATATCGTGCCCACCAACAACATCCATCTTT
* * *
745725 AGATTGGATTTCAACTTCACGATGAAGGATATCCAATTTAAGGCTCAACTTCACAACGAA--GG-
1 AGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAAGCTCAACTTCACAACGAATGGGC
* * *
745787 -T-CACGATTTCAACTTCACGACGAAAGATATGGTGCCCACCAACAACATCCATCCTT
66 ATCCACGATTTCAACTTCACGACGAAGGATATCGTGCCCACCAACAACATCCATCTTT
* * * * *
745843 ATATTGGATTTCAACTTCACAACGAAAGATATCCAATTCAAAGCTCAACTTCACAATGAATGAGC
1 AGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAAGCTCAACTTCACAACGAATG-GG
** * * * *
745908 CATCCATTATTTCAACTTCACGATGAAGGATATCGTGCCCA-TAAGCAACATCCATATCT
65 CATCCACGATTTCAACTTCACGACGAAGGATATCGTGCCCACCAA-CAACATCCATCTTT
* * *
745967 AGATTGGATTTCAACTTCACGACGAATGATATCAAATTCAAAGCTCAACTTCACAATGAATG
1 AGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAAGCTCAACTTCACAACGAATG
746029 AGATTTTCAG
Statistics
Matches: 266, Mismatches: 31, Indels: 14
0.86 0.10 0.05
Matches are distributed among these distances:
118 100 0.38
119 1 0.00
121 1 0.00
122 2 0.01
123 3 0.01
124 159 0.60
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (123 bp):
AGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAAGCTCAACTTCACAACGAATGGGC
ATCCACGATTTCAACTTCACGACGAAGGATATCGTGCCCACCAACAACATCCATCTTT
Found at i:746629 original size:17 final size:17
Alignment explanation
Indices: 746607--746647 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
746597 TAATATTATT
746607 ATTATATGATAT-TATAA
1 ATTATAT-ATATATATAA
746624 ATTATA-ATATATATAA
1 ATTATATATATATATAA
746640 ATT-TATAT
1 ATTATATAT
746648 TTTATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 6 0.27
16 10 0.45
17 6 0.27
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
ATTATATATATATATAA
Found at i:747764 original size:19 final size:19
Alignment explanation
Indices: 747740--747829 Score: 64
Period size: 19 Copynumber: 4.8 Consensus size: 19
747730 TATTTGTTTC
747740 TTTTATTATTTTTCTTAAT
1 TTTTATTATTTTTCTTAAT
*
747759 TTTTATTA-TGTTCTTTAAT
1 TTTTATTATTTTTC-TTAAT
*
747778 TTTT-TT-TGTTTTATT-AT
1 TTTTATTAT-TTTTCTTAAT
* * *
747795 TATTATTATTTATTATTTA-
1 TTTTATTATTT-TTCTTAAT
*
747814 TTATATTATTTTTCTT
1 TTTTATTATTTTTCTT
747830 CTTACTATAT
Statistics
Matches: 57, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
17 5 0.09
18 16 0.28
19 35 0.61
20 1 0.02
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTATTATTTTTCTTAAT
Found at i:747807 original size:7 final size:7
Alignment explanation
Indices: 747791--747823 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
747781 TTTTGTTTTA
747791 TTATTA-
1 TTATTAT
747797 TTATTAT
1 TTATTAT
747804 TTATTAT
1 TTATTAT
747811 TTATTAT
1 TTATTAT
747818 ATTATT
1 -TTATT
747824 TTTCTTCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 14 0.56
8 5 0.20
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTATTAT
Found at i:747922 original size:2 final size:2
Alignment explanation
Indices: 747915--747941 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
747905 TATACGTTAT
747915 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
747942 TACTTTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:747969 original size:13 final size:13
Alignment explanation
Indices: 747951--748034 Score: 61
Period size: 12 Copynumber: 6.7 Consensus size: 13
747941 TTACTTTATT
*
747951 TCTTTTTTGTTTA
1 TCTTTTTTATTTA
*
747964 TCTTTTTTCGTTTTA
1 TCTTTTTT--ATTTA
747979 T-TTTTTTATTT-
1 TCTTTTTTATTTA
* *
747990 TATTCTTTATTTA
1 TCTTTTTTATTTA
*
748003 TC-TCTTT-TTTA
1 TCTTTTTTATTTA
*
748014 TTTTTTTTATTTA
1 TCTTTTTTATTTA
748027 T-TTTTTTA
1 TCTTTTTTA
748035 ATCATTCATT
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
11 6 0.10
12 28 0.47
13 14 0.24
14 6 0.10
15 5 0.08
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (13 bp):
TCTTTTTTATTTA
Found at i:747976 original size:14 final size:14
Alignment explanation
Indices: 747951--747997 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
747941 TTACTTTATT
747951 TCTTTTTTG-TTTA
1 TCTTTTTTGTTTTA
747964 TCTTTTTTCGTTTTA
1 TCTTTTTT-GTTTTA
*
747979 T-TTTTTTATTTTA
1 TCTTTTTTGTTTTA
747992 TTCTTT
1 -TCTTT
747998 ATTTATCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
13 13 0.45
14 8 0.28
15 8 0.28
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.79
Consensus pattern (14 bp):
TCTTTTTTGTTTTA
Found at i:747998 original size:20 final size:19
Alignment explanation
Indices: 747974--748030 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
747964 TCTTTTTTCG
747974 TTTTATTTTTTTATTTTAT
1 TTTTATTTTTTTATTTTAT
747993 TCTTTATTTATCTCTT-TTTTAT
1 T-TTTATTT-T-T-TTATTTTAT
*
748015 TTTT-TTTATTTATTTT
1 TTTTATTTTTTTATTTT
748031 TTTAATCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 11
0.73 0.02 0.25
Matches are distributed among these distances:
17 2 0.06
18 5 0.16
19 1 0.03
20 10 0.31
21 4 0.12
22 8 0.25
23 2 0.06
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTATTTTTTTATTTTAT
Found at i:748002 original size:24 final size:23
Alignment explanation
Indices: 747975--748068 Score: 88
Period size: 24 Copynumber: 4.1 Consensus size: 23
747965 CTTTTTTCGT
747975 TTTATTTTTTTATTTTATTCTTTA
1 TTTATTTTTTT-TTTTATTCTTTA
* *
747999 TTTA-TCTCTTTTTTATT-TTT-
1 TTTATTTTTTTTTTTATTCTTTA
* * *
748019 TTTATTTATTTTTTTAATCATTCA
1 TTTATTTTTTTTTTTATTC-TTTA
748043 TTTATTTTTTTTCTTTA-TCTTTA
1 TTTATTTTTTTT-TTTATTCTTTA
748066 TTT
1 TTT
748069 TATCTTGTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
20 4 0.07
21 12 0.21
22 7 0.12
23 12 0.21
24 17 0.30
25 4 0.07
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTATTTTTTTTTTTATTCTTTA
Found at i:748013 original size:11 final size:10
Alignment explanation
Indices: 747987--748024 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
747977 TATTTTTTTA
747987 TTTTATTCTT
1 TTTTATTCTT
747997 TATTTATCTCTT
1 T-TTTAT-TCTT
748009 TTTTATT-TT
1 TTTTATTCTT
748018 TTTTATT
1 TTTTATT
748025 TATTTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.35
10 2 0.08
11 10 0.38
12 5 0.19
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTATTCTT
Found at i:748031 original size:20 final size:22
Alignment explanation
Indices: 747987--748226 Score: 69
Period size: 23 Copynumber: 10.8 Consensus size: 22
747977 TATTTTTTTA
*
747987 TTTTATTCTTTATTTATCTCTT
1 TTTTATTCTTTATTTATCTATT
*
748009 TTTTATT-TTT-TTTATTTATTT
1 TTTTATTCTTTATTTATCTA-TT
* * *
748030 TTTTAATCATTCATTTAT-TTTT
1 TTTTATTC-TTTATTTATCTATT
*
748052 TTTCTTTATCTTTATTTTATC--TT
1 TTT-TAT-TCTTTA-TTTATCTATT
*
748075 GTTTATT-TATGTATATTATCT-TT
1 TTTTATTCT-T-TAT-TTATCTATT
*
748098 ATTTTATTTCTTTCATTTCTCTA-T
1 -TTTTA-TTCTTT-ATTTATCTATT
* *
748122 CTTTA-T-TTTAATTATGCTATT
1 TTTTATTCTTTATTTAT-CTATT
*
748143 TACTTTTTATCTTTACTTTA--TA-T
1 T--TTTAT-TCTTTA-TTTATCTATT
*
748166 TTTTATTGTTTATTTCATCTA-T
1 TTTTATTCTTTATTT-ATCTATT
* * *
748188 TTTTACTTCTTTATTTTTTTCTT
1 TTTTA-TTCTTTATTTATCTATT
*
748211 CTTTATT-TTTATTTAT
1 TTTTATTCTTTATTTAT
748227 TTTCATCACC
Statistics
Matches: 162, Mismatches: 26, Indels: 61
0.65 0.10 0.24
Matches are distributed among these distances:
19 7 0.04
20 19 0.12
21 28 0.17
22 33 0.20
23 36 0.22
24 25 0.15
25 6 0.04
26 5 0.03
27 3 0.02
ACGTcount: A:0.17, C:0.10, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTATTCTTTATTTATCTATT
Found at i:748070 original size:48 final size:46
Alignment explanation
Indices: 747935--748071 Score: 120
Period size: 48 Copynumber: 2.8 Consensus size: 46
747925 TATATATATA
747935 TATAT-ATTACTTTATTTCTTTTTTGTTTATCTTTTTTCGT-TTTATTTTTT
1 TATATCATT-CTTTA-TT-TTTTTT-TTTATCTTTTTT--TATTTATTTTTT
* *
747985 TATTTTATTCTTTATTTATCTCTTTTTTAT-TTTTTTTATTTATTTTTT
1 TATATCATTCTTTATTT-T-T-TTTTTTATCTTTTTTTATTTATTTTTT
748033 TA-ATCATTCATTTATTTTTTTTCTTTATCTTTATTTTAT
1 TATATCATTC-TTTATTTTTTTT-TTTATCTTT-TTTTAT
748072 CTTGTTTATT
Statistics
Matches: 75, Mismatches: 3, Indels: 20
0.77 0.03 0.20
Matches are distributed among these distances:
45 3 0.04
46 6 0.08
47 10 0.13
48 26 0.35
49 9 0.12
50 15 0.20
51 6 0.08
ACGTcount: A:0.16, C:0.08, G:0.01, T:0.74
Consensus pattern (46 bp):
TATATCATTCTTTATTTTTTTTTTTATCTTTTTTTATTTATTTTTT
Found at i:748080 original size:33 final size:33
Alignment explanation
Indices: 747975--748163 Score: 117
Period size: 33 Copynumber: 5.7 Consensus size: 33
747965 CTTTTTTCGT
* *
747975 TTTATTTTTTTAT-TTTATTCTTTATTTATCTCTTT
1 TTTA-TTTTTTATCTTTA-TCTTTATTT-TATCTTA
* * *
748010 TTTATTTTTTTTATTTAT-TTT-TTTAATCATTCA
1 TTTATTTTTTATCTTTATCTTTATTTTATC-TT-A
* *
748043 TTTATTTTTTTTCTTTATCTTTATTTTATCTTG
1 TTTATTTTTTATCTTTATCTTTATTTTATCTTA
* * *
748076 TTTATTTATGTAT-ATTATCTTTATTTTAT-TTC
1 TTTATTT-TTTATCTTTATCTTTATTTTATCTTA
* *
748108 TTTCATTTCTCTATCTTTAT-TTTA-ATTATGC-TA
1 TTT-ATTT-TTTATCTTTATCTTTATTTTAT-CTTA
*
748141 TTTACTTTTTATCTTTA-CTTTAT
1 TTTATTTTTTATCTTTATCTTTAT
748164 ATTTTTATTG
Statistics
Matches: 124, Mismatches: 18, Indels: 27
0.73 0.11 0.16
Matches are distributed among these distances:
31 15 0.12
32 17 0.14
33 58 0.47
34 20 0.16
35 14 0.11
ACGTcount: A:0.18, C:0.10, G:0.02, T:0.71
Consensus pattern (33 bp):
TTTATTTTTTATCTTTATCTTTATTTTATCTTA
Found at i:748083 original size:24 final size:23
Alignment explanation
Indices: 747974--748084 Score: 72
Period size: 24 Copynumber: 4.8 Consensus size: 23
747964 TCTTTTTTCG
747974 TTTTATTTTTTTATTTTATTCTTTA
1 TTTTATTTTTTTA-TTTA-TCTTTA
* *
747999 -TTTATCTCTTT-TTTAT-TTT-
1 TTTTATTTTTTTATTTATCTTTA
*
748018 TTTTATTTATTTT-TTTAATCATTCA
1 TTTTATTT-TTTTATTT-ATC-TTTA
*
748043 -TTTATTTTTTTTCTTTATCTTTA
1 TTTTA-TTTTTTTATTTATCTTTA
*
748066 TTTTATCTTGTTTATTTAT
1 TTTTAT-TTTTTTATTTAT
748085 GTATATTATC
Statistics
Matches: 68, Mismatches: 8, Indels: 21
0.70 0.08 0.22
Matches are distributed among these distances:
20 9 0.13
21 7 0.10
22 6 0.09
23 4 0.06
24 36 0.53
25 6 0.09
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.76
Consensus pattern (23 bp):
TTTTATTTTTTTATTTATCTTTA
Found at i:748115 original size:14 final size:14
Alignment explanation
Indices: 748088--748172 Score: 52
Period size: 13 Copynumber: 5.9 Consensus size: 14
748078 TATTTATGTA
748088 TATTATCTTTATTT
1 TATTATCTTTATTT
748102 TATT-TCTTTCATTT
1 TATTATCTTT-ATTT
*
748116 CT-CTATCTTTATTT
1 -TATTATCTTTATTT
*
748130 TAATTATGCTATTTACTT
1 T-ATTAT-C--TTTATTT
*
748148 T-TTATCTTTACTT
1 TATTATCTTTATTT
*
748161 TA-TATTTTTATT
1 TATTATCTTTATT
748173 GTTTATTTCA
Statistics
Matches: 57, Mismatches: 5, Indels: 19
0.70 0.06 0.23
Matches are distributed among these distances:
13 22 0.39
14 13 0.23
15 10 0.18
16 5 0.09
18 7 0.12
ACGTcount: A:0.20, C:0.12, G:0.01, T:0.67
Consensus pattern (14 bp):
TATTATCTTTATTT
Found at i:748192 original size:15 final size:14
Alignment explanation
Indices: 748167--748224 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 14
748157 ACTTTATATT
748167 TTTATTGTTTATTTC
1 TTTATT-TTTATTTC
* *
748182 ATCTATTTTTACTTC
1 -TTTATTTTTATTTC
*
748197 TTTATTTTTTTCTTC
1 TTTATTTTTAT-TTC
748212 TTTATTTTTATTT
1 TTTATTTTTATTT
748225 ATTTTCATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
14 10 0.29
15 20 0.57
16 5 0.14
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTATTTTTATTTC
Found at i:750253 original size:23 final size:23
Alignment explanation
Indices: 750235--750294 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
750225 GTTTTAGGTT
*
750235 CGGGTTTAGGCTTGGTTTAGATC
1 CGGGTTCAGGCTTGGTTTAGATC
*
750258 CGGGTTCAGTCTTGGTTTAGATC
1 CGGGTTCAGGCTTGGTTTAGATC
*
750281 CGGGTTCGGGCTTG
1 CGGGTTCAGGCTTG
750295 TAATTGTGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.10, C:0.17, G:0.37, T:0.37
Consensus pattern (23 bp):
CGGGTTCAGGCTTGGTTTAGATC
Found at i:752806 original size:15 final size:15
Alignment explanation
Indices: 752782--752822 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
752772 TTTTTGGGCA
752782 AAAATAAAATCAAAT
1 AAAATAAAATCAAAT
*
752797 AAAATCAAATCAAAT
1 AAAATAAAATCAAAT
*
752812 AGAAAGAAAAT
1 A-AAATAAAAT
752823 TACTCTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.71, C:0.07, G:0.05, T:0.17
Consensus pattern (15 bp):
AAAATAAAATCAAAT
Found at i:753031 original size:3 final size:3
Alignment explanation
Indices: 753017--753131 Score: 90
Period size: 3 Copynumber: 36.3 Consensus size: 3
753007 TTTTGTCGGA
* *
753017 ATT ATT AGTT ATT ATTT ATT ATT ATT ATTT ACT ATT AATA ATT ATTT
1 ATT ATT A-TT ATT A-TT ATT ATT ATT A-TT ATT ATT -ATT ATT A-TT
* * *
753064 ATT ACT ATA ATT AATT ATT ATT ATT ATT -TT A-T ATT ATT AGTT ACT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
*
753109 ATT ACTA ATT ATT ATT ATT ATT A
1 ATT A-TT ATT ATT ATT ATT ATT A
753132 GAAGTCCAAC
Statistics
Matches: 90, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
2 4 0.04
3 64 0.71
4 22 0.24
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:753032 original size:10 final size:9
Alignment explanation
Indices: 753017--753131 Score: 90
Period size: 10 Copynumber: 12.1 Consensus size: 9
753007 TTTTGTCGGA
753017 ATTATTAGTT
1 ATTATTA-TT
753027 ATTATTTATT
1 ATTA-TTATT
753037 ATTATTATTT
1 ATTATTA-TT
* *
753047 ACTATTAATA
1 ATTATT-ATT
753057 ATTATTTATT
1 ATTA-TTATT
* *
753067 ACTATAATT
1 ATTATTATT
753076 AATTATTATT
1 -ATTATTATT
753086 ATTATT-TT
1 ATTATTATT
753094 A-TATTATT
1 ATTATTATT
*
753102 AGTTACTATT
1 A-TTATTATT
*
753112 ACTAATTATT
1 A-TTATTATT
753122 ATTATTATT
1 ATTATTATT
753131 A
1 A
753132 GAAGTCCAAC
Statistics
Matches: 84, Mismatches: 13, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
7 4 0.05
8 6 0.07
9 21 0.25
10 47 0.56
11 6 0.07
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (9 bp):
ATTATTATT
Found at i:753043 original size:13 final size:13
Alignment explanation
Indices: 753018--753130 Score: 84
Period size: 13 Copynumber: 8.1 Consensus size: 13
753008 TTTGTCGGAA
753018 TTATTAGTTATTAT
1 TTATTA-TTATTAT
753032 TTATTATTATTATT
1 TTATTATTATTA-T
*
753046 TACTATTAATAATTAT
1 T--TATT-ATTATTAT
*
753062 TTATTACTATAATTAA
1 TTATTA-T-T-ATTAT
753078 TTATTATTATTAT
1 TTATTATTATTAT
*
753091 TT-TATATTATTAG
1 TTAT-TATTATTAT
* * *
753104 TTACTATTACTAA
1 TTATTATTATTAT
753117 TTATTATTATTAT
1 TTATTATTATTAT
753130 T
1 T
753131 AGAAGTCCAA
Statistics
Matches: 79, Mismatches: 11, Indels: 19
0.72 0.10 0.17
Matches are distributed among these distances:
12 1 0.01
13 41 0.52
14 14 0.18
15 1 0.01
16 16 0.20
17 6 0.08
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (13 bp):
TTATTATTATTAT
Found at i:753681 original size:43 final size:44
Alignment explanation
Indices: 753588--753682 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 44
753578 TCCGGATTTG
* **
753588 ATAGTTATATATTAAAAAATAATTAATTAGTTTGTTTGTTAGTCG
1 ATAGTTATATA-TAAAAAATAATTAATTAGTTTGTTAGTTAGTAA
* *
753633 TTAGTTATATA-AAAAAATATTTAATTAGTTTG-TAGTTAGTTAA
1 ATAGTTATATATAAAAAATAATTAATTAGTTTGTTAGTTAG-TAA
753676 ATAGTTA
1 ATAGTTA
753683 AGTTATATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
42 6 0.14
43 27 0.63
45 10 0.23
ACGTcount: A:0.40, C:0.01, G:0.13, T:0.46
Consensus pattern (44 bp):
ATAGTTATATATAAAAAATAATTAATTAGTTTGTTAGTTAGTAA
Found at i:755548 original size:16 final size:16
Alignment explanation
Indices: 755527--755592 Score: 87
Period size: 16 Copynumber: 4.1 Consensus size: 16
755517 TCGGGATCAC
755527 ATGGCGACCTCCATTT
1 ATGGCGACCTCCATTT
*
755543 ATGGCGACCTCAATTT
1 ATGGCGACCTCCATTT
* ***
755559 ATGGCGACCTTCACGC
1 ATGGCGACCTCCATTT
755575 ATGGCGACCTCCATTT
1 ATGGCGACCTCCATTT
755591 AT
1 AT
755593 TCCGTGGGTG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (16 bp):
ATGGCGACCTCCATTT
Found at i:755948 original size:7 final size:7
Alignment explanation
Indices: 755936--756013 Score: 59
Period size: 7 Copynumber: 10.3 Consensus size: 7
755926 TTTGTCGGAA
*
755936 TTATTAG
1 TTATTAT
755943 TTATTAT
1 TTATTAT
755950 TTATTA-
1 TTATTAT
755956 TTATTAT
1 TTATTAT
755963 TTATTAT
1 TTATTAT
755970 TAATAATTAT
1 T--T-ATTAT
755980 TTATTACT
1 TTATTA-T
* *
755988 ATCATTAA
1 -TTATTAT
755996 TTATTAAT
1 TTATT-AT
756004 ATTATTAT
1 -TTATTAT
756012 TT
1 TT
756014 TATATTATTG
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
6 6 0.10
7 30 0.52
8 5 0.09
9 11 0.19
10 6 0.10
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (7 bp):
TTATTAT
Found at i:755949 original size:3 final size:3
Alignment explanation
Indices: 755935--756049 Score: 90
Period size: 3 Copynumber: 36.3 Consensus size: 3
755925 TTTTGTCGGA
*
755935 ATT ATT AGTT ATT ATTT ATT ATT ATT ATTT ATT ATT AATA ATT ATTT
1 ATT ATT A-TT ATT A-TT ATT ATT ATT A-TT ATT ATT -ATT ATT A-TT
* * *
755982 ATT ACT ATC ATT AATT ATT AAT ATT ATT ATT -TT A-T ATT ATT GATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
* *
756027 ACT ATT ACTA ATT ATT ATT ATT A
1 ATT ATT A-TT ATT ATT ATT ATT A
756050 GAAGTCCAAC
Statistics
Matches: 90, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
2 4 0.04
3 64 0.71
4 22 0.24
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:755950 original size:10 final size:9
Alignment explanation
Indices: 755935--756049 Score: 90
Period size: 10 Copynumber: 12.1 Consensus size: 9
755925 TTTTGTCGGA
755935 ATTATTAGTT
1 ATTATTA-TT
755945 ATTATTTATT
1 ATTA-TTATT
755955 ATTATTATTT
1 ATTATTA-TT
*
755965 ATTATTAATA
1 ATTATT-ATT
755975 ATTATTTATT
1 ATTA-TTATT
* *
755985 ACTATCATT
1 ATTATTATT
*
755994 AATTATTAAT
1 -ATTATTATT
756004 ATTATTATT
1 ATTATTATT
756013 -TTA-TATT
1 ATTATTATT
*
756020 ATTGATTACT
1 ATT-ATTATT
*
756030 ATTACTAATT
1 ATTA-TTATT
756040 ATTATTATT
1 ATTATTATT
756049 A
1 A
756050 GAAGTCCAAC
Statistics
Matches: 84, Mismatches: 12, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
7 4 0.05
8 5 0.06
9 22 0.26
10 47 0.56
11 6 0.07
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (9 bp):
ATTATTATT
Found at i:755961 original size:13 final size:13
Alignment explanation
Indices: 755936--756048 Score: 78
Period size: 13 Copynumber: 9.1 Consensus size: 13
755926 TTTGTCGGAA
755936 TTATTAGTTATTAT
1 TTATTA-TTATTAT
755950 TTATTATTATTAT
1 TTATTATTATTAT
* *
755963 TTATTATTAATAA
1 TTATTATTATTAT
755976 TTA-T-TTATTA-
1 TTATTATTATTAT
* *
755986 CTATCATTAATTA-
1 TTATTATT-ATTAT
*
755999 TTAATATTATTA-
1 TTATTATTATTAT
756011 TT-TTA-TATTAT
1 TTATTATTATTAT
* * *
756022 TGATTACTATTAC
1 TTATTATTATTAT
*
756035 TAATTATTATTAT
1 TTATTATTATTAT
756048 T
1 T
756049 AGAAGTCCAA
Statistics
Matches: 79, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
10 7 0.09
11 8 0.10
12 12 0.15
13 46 0.58
14 6 0.08
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (13 bp):
TTATTATTATTAT
Found at i:756021 original size:42 final size:46
Alignment explanation
Indices: 755945--756049 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 46
755935 ATTATTAGTT
* *
755945 ATTATTTATTATTATTATTTATTATTAATAATTATTTATTACTATC
1 ATTAATTATTATTATTATTTATTATTAATAATTATTGATTACTATC
* *
755991 ATTAATTATTAATATTA-TTATT-TT-AT-ATTATTGATTACTATT
1 ATTAATTATTATTATTATTTATTATTAATAATTATTGATTACTATC
*
756033 ACTAATTATTATTATTA
1 ATTAATTATTATTATTA
756050 GAAGTCCAAC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 29 0.55
43 2 0.04
44 2 0.04
45 5 0.09
46 15 0.28
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (46 bp):
ATTAATTATTATTATTATTTATTATTAATAATTATTGATTACTATC
Found at i:757347 original size:43 final size:43
Alignment explanation
Indices: 757266--757348 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
757256 TTATATATTA
* ***
757266 AAAAAAATAATTAATTAGTTTGTTTGTTAGTCGTTAGTTATAT
1 AAAAAAATAATTAATTAGTTTGTTAGTTAGTAAATAGTTATAT
*
757309 AAAAAAATATTTAATTAGTTTG-TAGTTAGTTAAATAGTTA
1 AAAAAAATAATTAATTAGTTTGTTAGTTAG-TAAATAGTTA
757349 AGTTATATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 6 0.18
43 28 0.82
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.45
Consensus pattern (43 bp):
AAAAAAATAATTAATTAGTTTGTTAGTTAGTAAATAGTTATAT
Found at i:757605 original size:49 final size:49
Alignment explanation
Indices: 757512--757616 Score: 117
Period size: 49 Copynumber: 2.1 Consensus size: 49
757502 TATTTTAAAA
* * *
757512 TGTTAGTT-GTTAGTTTATTTTATTATATTATAAGTTATTATATAAATTT
1 TGTT-GTTAGTTAGTTTATTTGATTATATTATAAGTGATTATATAAATAT
* *
757561 TTTTGTTAGTTAGTTTATATTAGATTATATTA-AA-TGATTTTATAAATAT
1 TGTTGTTAGTTAGTTTAT-TT-GATTATATTATAAGTGATTATATAAATAT
757610 TGTTGTT
1 TGTTGTT
757617 TAATTGTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
48 3 0.06
49 31 0.66
50 4 0.09
51 9 0.19
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.58
Consensus pattern (49 bp):
TGTTGTTAGTTAGTTTATTTGATTATATTATAAGTGATTATATAAATAT
Found at i:759937 original size:29 final size:29
Alignment explanation
Indices: 759891--759977 Score: 147
Period size: 29 Copynumber: 3.0 Consensus size: 29
759881 AGTGTTGGCC
759891 GTAGGTCGCCATGCCTTCCGGGTGACCTT
1 GTAGGTCGCCATGCCTTCCGGGTGACCTT
*
759920 GTAGGTCGCCATGTCTTCCGGGTGACCTT
1 GTAGGTCGCCATGCCTTCCGGGTGACCTT
* *
759949 GTAGGTCACCATGCCTTCCGGGCGACCTT
1 GTAGGTCGCCATGCCTTCCGGGTGACCTT
759978 ATCTCTGCCT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.11, C:0.31, G:0.30, T:0.28
Consensus pattern (29 bp):
GTAGGTCGCCATGCCTTCCGGGTGACCTT
Found at i:760061 original size:27 final size:26
Alignment explanation
Indices: 760011--760086 Score: 125
Period size: 27 Copynumber: 2.9 Consensus size: 26
760001 ACATCTCCAA
*
760011 CAATCATGCACATCTCGCCATGCCTT
1 CAATCATGCACGTCTCGCCATGCCTT
*
760037 CAATCATGCACCGTCTCACCATGCCTT
1 CAATCATGCA-CGTCTCGCCATGCCTT
760064 CAATCATGCACGTCTCGCCATGC
1 CAATCATGCACGTCTCGCCATGC
760087 TTCCCGCATG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 22 0.48
27 24 0.52
ACGTcount: A:0.22, C:0.39, G:0.13, T:0.25
Consensus pattern (26 bp):
CAATCATGCACGTCTCGCCATGCCTT
Found at i:760383 original size:26 final size:26
Alignment explanation
Indices: 760343--760400 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
760333 ACATAAAAGA
*
760343 AAGAAAGGGAGAAGATATTGCAGCCG
1 AAGAAAGGGAGAAGAGATTGCAGCCG
* *
760369 AAGAAAGGGATAAGAGATTGCTGCCG
1 AAGAAAGGGAGAAGAGATTGCAGCCG
760395 -AGAAAG
1 AAGAAAG
760401 AAAGAAATGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 6 0.21
26 23 0.79
ACGTcount: A:0.43, C:0.10, G:0.34, T:0.12
Consensus pattern (26 bp):
AAGAAAGGGAGAAGAGATTGCAGCCG
Found at i:760585 original size:21 final size:22
Alignment explanation
Indices: 760546--760586 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
760536 GTTAATTAGT
*
760546 TTGTTAGTTTAGGGTTATATGA
1 TTGTTAGTTTAGAGTTATATGA
760568 TTGTTAGTTTA-AGTTATAT
1 TTGTTAGTTTAGAGTTATAT
760587 TATACAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.54
Consensus pattern (22 bp):
TTGTTAGTTTAGAGTTATATGA
Found at i:760676 original size:39 final size:40
Alignment explanation
Indices: 760597--760721 Score: 101
Period size: 39 Copynumber: 3.1 Consensus size: 40
760587 TATACAGAAA
* * * *
760597 TAAAAAATTATTTAATTAGTATG-TTTGATAGTTATATAGT
1 TAAAAAA-TAATTAATTAGTTTGTTTTGTTAGTCATATAGT
*
760637 TAAAAAATAATTAATTAGTTTGTTTTGTTAGTCGT-TAGT
1 TAAAAAATAATTAATTAGTTTGTTTTGTTAGTCATATAGT
* * * * * *
760676 TATATAAAAAAATTATTTAATTAGTTTATGTTAGTTAAATAGT
1 TA-A-AAAATAATTAATTAGTTTGTTT-TGTTAGTCATATAGT
760719 TAA
1 TAA
760722 GTTATATTTG
Statistics
Matches: 68, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
39 19 0.28
40 17 0.25
41 18 0.26
42 8 0.12
43 6 0.09
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.47
Consensus pattern (40 bp):
TAAAAAATAATTAATTAGTTTGTTTTGTTAGTCATATAGT
Found at i:760719 original size:43 final size:40
Alignment explanation
Indices: 760598--760721 Score: 106
Period size: 43 Copynumber: 3.0 Consensus size: 40
760588 ATACAGAAAT
* *
760598 AAAAAATTATTTAATTAGTATGTTTGATAGTTATATAGTTAAA
1 AAAAAATTATTTAATTAG--T-TTTGTTAGTTAAATAGTTAAA
* * * * ***
760641 AAATAATTAATTAGTTTGTTTTGTTAG-TCGTTAGTTATATA
1 AAAAAATTATTTAATTAGTTTTGTTAGTTAAATAGTTA-A-A
760682 AAAAAATTATTTAATTAGTTTATGTTAGTTAAATAGTTAA
1 AAAAAATTATTTAATTAGTTT-TGTTAGTTAAATAGTTAA
760722 GTTATATTTG
Statistics
Matches: 62, Mismatches: 15, Indels: 9
0.72 0.17 0.10
Matches are distributed among these distances:
39 7 0.11
40 8 0.13
41 19 0.31
42 7 0.11
43 21 0.34
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.47
Consensus pattern (40 bp):
AAAAAATTATTTAATTAGTTTTGTTAGTTAAATAGTTAAA
Found at i:760926 original size:11 final size:12
Alignment explanation
Indices: 760912--761021 Score: 54
Period size: 11 Copynumber: 9.2 Consensus size: 12
760902 TTAGTTCATT
760912 ATTATC-AAATC
1 ATTATCTAAATC
760923 ATTA-CTAAATC
1 ATTATCTAAATC
* *
760934 ATTAT-TATCATT
1 ATTATCTA-AATC
760946 ATTAT-TAAATC
1 ATTATCTAAATC
* *
760957 AATAT-TATAATG
1 ATTATCTA-AATC
760969 ATTATTACTAAATC
1 ATTA-T-CTAAATC
*
760983 ATTAT-TATAATG
1 ATTATCTA-AATC
*
760995 ATTATTATCAAATC
1 ATTA-TCT-AAATC
761009 ATTA-CTAAATC
1 ATTATCTAAATC
761020 AT
1 AT
761022 CAAATCATTA
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
10 1 0.01
11 32 0.42
12 23 0.30
13 3 0.04
14 15 0.19
15 3 0.04
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.44
Consensus pattern (12 bp):
ATTATCTAAATC
Found at i:760946 original size:34 final size:35
Alignment explanation
Indices: 760907--760975 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
760897 GTTTATTAGT
*
760907 TCATTATTATCAAATCATTACTA-AATCATTATTA
1 TCATTATTATCAAATCAATACTATAATCATTATTA
* * *
760941 TCATTATTATTAAATCAATATTATAATGATTATTA
1 TCATTATTATCAAATCAATACTATAATCATTATTA
760976 CTAAATCATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 20 0.67
35 10 0.33
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.46
Consensus pattern (35 bp):
TCATTATTATCAAATCAATACTATAATCATTATTA
Found at i:760954 original size:23 final size:23
Alignment explanation
Indices: 760907--760990 Score: 87
Period size: 26 Copynumber: 3.4 Consensus size: 23
760897 GTTTATTAGT
*
760907 TCATTATTATCAAATCATTACTAAA
1 TCATTATTATC--ATTATTACTAAA
*
760932 TCATTATTATCATTATTATTAAA
1 TCATTATTATCATTATTACTAAA
* *
760955 TCAATATTATAATGATTATTACTAAA
1 TC---ATTATTATCATTATTACTAAA
760981 TCATTATTAT
1 TCATTATTAT
760991 AATGATTATT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
23 19 0.38
25 11 0.22
26 20 0.40
ACGTcount: A:0.42, C:0.11, G:0.01, T:0.46
Consensus pattern (23 bp):
TCATTATTATCATTATTACTAAA
Found at i:760963 original size:26 final size:26
Alignment explanation
Indices: 760934--761009 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
760924 TTACTAAATC
* *
760934 ATTATTATCATTATTATTAAATCAAT
1 ATTATAATGATTATTATTAAATCAAT
* *
760960 ATTATAATGATTATTACTAAATCATT
1 ATTATAATGATTATTATTAAATCAAT
*
760986 ATTATAATGATTATTATCAAATCA
1 ATTATAATGATTATTATTAAATCA
761010 TTACTAAATC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (26 bp):
ATTATAATGATTATTATTAAATCAAT
Found at i:760987 original size:37 final size:37
Alignment explanation
Indices: 760940--761021 Score: 94
Period size: 37 Copynumber: 2.1 Consensus size: 37
760930 AATCATTATT
*
760940 ATCATTATTATTAAATCAATATTAT-AATGATTATTACTAA
1 ATCATTATTA-T-AATCAATATTATCAA--ATCATTACTAA
* *
760980 ATCATTATTATAATGATTATTATCAAATCATTACTAA
1 ATCATTATTATAATCAATATTATCAAATCATTACTAA
761017 ATCAT
1 ATCAT
761022 CAAATCATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
37 15 0.39
38 10 0.26
39 3 0.08
40 10 0.26
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (37 bp):
ATCATTATTATAATCAATATTATCAAATCATTACTAA
Found at i:760998 original size:23 final size:23
Alignment explanation
Indices: 760907--760998 Score: 94
Period size: 23 Copynumber: 3.8 Consensus size: 23
760897 GTTTATTAGT
*
760907 TCATTATTATCAAATCATTACTAAA
1 TCATTATTAT--AATGATTACTAAA
* * *
760932 TCATTATTATCATTATTATTAAA
1 TCATTATTATAATGATTACTAAA
*
760955 TCAATATTATAATGATTATTACTAAA
1 TCATTATTATAATG---ATTACTAAA
760981 TCATTATTATAATGATTA
1 TCATTATTATAATGATTA
760999 TTATCAAATC
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
23 25 0.45
25 10 0.18
26 21 0.38
ACGTcount: A:0.42, C:0.10, G:0.02, T:0.46
Consensus pattern (23 bp):
TCATTATTATAATGATTACTAAA
Found at i:761066 original size:16 final size:15
Alignment explanation
Indices: 760978--761067 Score: 55
Period size: 16 Copynumber: 5.9 Consensus size: 15
760968 GATTATTACT
760978 AAATCATT-ATTAT-
1 AAATCATTAATTATC
*
760991 -AATGATT-ATTATC
1 AAATCATTAATTATC
*
761004 AAATCATTACTAAATCATC
1 AAATCA-T--T-AATTATC
* *
761023 AAATCATTAAATATTA
1 AAATCATTAATTA-TC
761039 AAATCATT-ATTATC
1 AAATCATTAATTATC
761053 AAATCATATAATTAT
1 AAATCAT-TAATTAT
761068 TAAAAAATCG
Statistics
Matches: 59, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
12 11 0.19
14 12 0.20
15 8 0.14
16 15 0.25
17 1 0.02
18 1 0.02
19 11 0.19
ACGTcount: A:0.48, C:0.11, G:0.01, T:0.40
Consensus pattern (15 bp):
AAATCATTAATTATC
Found at i:761285 original size:49 final size:49
Alignment explanation
Indices: 761221--761333 Score: 199
Period size: 49 Copynumber: 2.3 Consensus size: 49
761211 ATTACTAATA
761221 ATTACTAAATCATTACTATCAAATCATTAAATATTAAAAATAATTTCATT
1 ATTACT-AATCATTACTATCAAATCATTAAATATTAAAAATAATTTCATT
* *
761271 ATTACTAATCATTACTTTCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAAAAATAATTTCATT
761320 ATTACTAATCATTA
1 ATTACTAATCATTA
761334 AAATAATAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
49 55 0.90
50 6 0.10
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (49 bp):
ATTACTAATCATTACTATCAAATCATTAAATATTAAAAATAATTTCATT
Found at i:761316 original size:27 final size:27
Alignment explanation
Indices: 761239--761317 Score: 69
Period size: 25 Copynumber: 3.1 Consensus size: 27
761229 ATCATTACTA
*
761239 TCAAATCATTAAATATTAAAAATAATT
1 TCAAATCATTAAATATTAATAATAATT
* * * * *
761266 TC--ATTATT-ACTAATCAT--TACTT
1 TCAAATCATTAAATATTAATAATAATT
761288 TCAAATCATTAAATATTAATAATAATT
1 TCAAATCATTAAATATTAATAATAATT
761315 TCA
1 TCA
761318 TTATTACTAA
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
22 6 0.17
24 10 0.28
25 11 0.31
27 9 0.25
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (27 bp):
TCAAATCATTAAATATTAATAATAATT
Found at i:761328 original size:18 final size:18
Alignment explanation
Indices: 761301--761361 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 18
761291 AATCATTAAA
761301 TATTAATAATAATTTCAT
1 TATTAATAATAATTTCAT
* *
761319 TATTACTAATCA-TT-A-
1 TATTAATAATAATTTCAT
* *
761334 AAATAATAATAATTTCAT
1 TATTAATAATAATTTCAT
*
761352 TATTACTAAT
1 TATTAATAAT
761362 CATTACTAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
15 8 0.26
16 3 0.10
17 3 0.10
18 17 0.55
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTAATAATAATTTCAT
Found at i:761346 original size:33 final size:33
Alignment explanation
Indices: 761291--761375 Score: 134
Period size: 33 Copynumber: 2.5 Consensus size: 33
761281 ATTACTTTCA
761291 AATCATTAAATATTAATAATAATTTCATTATTACT
1 AATCATTAAA-A-TAATAATAATTTCATTATTACT
761326 AATCATTAAAATAATAATAATTTCATTATTACT
1 AATCATTAAAATAATAATAATTTCATTATTACT
761359 AATCATTACTAAATAAT
1 AATCATTA--AAATAAT
761376 TATTATAATT
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
33 30 0.62
34 1 0.02
35 17 0.35
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.42
Consensus pattern (33 bp):
AATCATTAAAATAATAATAATTTCATTATTACT
Found at i:761459 original size:16 final size:16
Alignment explanation
Indices: 761417--761461 Score: 74
Period size: 16 Copynumber: 2.8 Consensus size: 16
761407 AATCATGATT
761417 ATCAAATCAT-TACTAA
1 ATCAAATCATAT-CTAA
761433 ATCAAATCATATCTAA
1 ATCAAATCATATCTAA
761449 ATCAAATCATATC
1 ATCAAATCATATC
761462 ATATCATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 27 0.96
17 1 0.04
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.31
Consensus pattern (16 bp):
ATCAAATCATATCTAA
Found at i:765041 original size:28 final size:28
Alignment explanation
Indices: 765010--765063 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
765000 ACAATCTAAT
765010 ATATAACTTAAACTAACAAACTAATATA
1 ATATAACTTAAACTAACAAACTAATATA
765038 ATATAACTTAAACTAACAAACTAATA
1 ATATAACTTAAACTAACAAACTAATA
765064 ATTTATACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (28 bp):
ATATAACTTAAACTAACAAACTAATATA
Found at i:765070 original size:28 final size:28
Alignment explanation
Indices: 765006--765070 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
764996 TTATACAATC
765006 TAATATATAACTTAAACTAACAAACTAA
1 TAATATATAACTTAAACTAACAAACTAA
765034 T-ATAATATAACTTAAACTAACAAACTAA
1 TAAT-ATATAACTTAAACTAACAAACTAA
*
765062 TAATTTATA
1 TAATATATA
765071 CTAACAAACT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
27 2 0.06
28 30 0.88
29 2 0.06
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.32
Consensus pattern (28 bp):
TAATATATAACTTAAACTAACAAACTAA
Found at i:765073 original size:21 final size:21
Alignment explanation
Indices: 765040--765088 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
765030 CTAATATAAT
765040 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
765061 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
765082 ATTAACT
1 A-TAACT
765089 AAATTTTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:765225 original size:5 final size:5
Alignment explanation
Indices: 765215--765243 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
765205 TTCTTCTTCT
765215 TTTCC TTTCC TTTCC TTTCC TTTCC TTTC
1 TTTCC TTTCC TTTCC TTTCC TTTCC TTTC
765244 TCTCGCCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (5 bp):
TTTCC
Found at i:765877 original size:30 final size:30
Alignment explanation
Indices: 765843--765912 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
765833 CTTGGGAGTG
765843 CATTATCTCGTGAAATAATTTCTTCGAGAA
1 CATTATCTCGTGAAATAATTTCTTCGAGAA
765873 CATTATCTCGTGAAATAATTTCTTCGAGAA
1 CATTATCTCGTGAAATAATTTCTTCGAGAA
765903 CATTATCTCG
1 CATTATCTCG
765913 AGAGTTTTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (30 bp):
CATTATCTCGTGAAATAATTTCTTCGAGAA
Found at i:766917 original size:61 final size:61
Alignment explanation
Indices: 766849--766963 Score: 185
Period size: 61 Copynumber: 1.9 Consensus size: 61
766839 TGGGCACAAA
* * * *
766849 TTTCTTTGGTTAGTCACTTATTTTATTGATGGTGTCTACCCTGAAATTTTATTTTTTAAAT
1 TTTCTTTGATTAGTCACATATTTTATTGATAGTGTCCACCCTGAAATTTTATTTTTTAAAT
*
766910 TTTCTTTGATTAGTCACATGTTTTATTGATAGTGTCCACCCTGAAATTTTATTT
1 TTTCTTTGATTAGTCACATATTTTATTGATAGTGTCCACCCTGAAATTTTATTT
766964 ATGTTTAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.22, C:0.13, G:0.13, T:0.52
Consensus pattern (61 bp):
TTTCTTTGATTAGTCACATATTTTATTGATAGTGTCCACCCTGAAATTTTATTTTTTAAAT
Found at i:767293 original size:20 final size:20
Alignment explanation
Indices: 767270--767324 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
767260 AAATTCGCAA
*
767270 TGCGATTTTGAAAAATGTGT
1 TGCGATATTGAAAAATGTGT
767290 TGCGATAGTT--AAAATGTGT
1 TGCGATA-TTGAAAAATGTGT
*
767309 TGCGATAGTGAAAAAT
1 TGCGATATTGAAAAAT
767325 CCAAAATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 1 0.03
19 16 0.53
20 11 0.37
21 2 0.07
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (20 bp):
TGCGATATTGAAAAATGTGT
Found at i:767305 original size:19 final size:19
Alignment explanation
Indices: 767281--767322 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
767271 GCGATTTTGA
*
767281 AAAATGTGTTGCGATAGTT
1 AAAATGTGTTGCGATAGTG
767300 AAAATGTGTTGCGATAGTG
1 AAAATGTGTTGCGATAGTG
767319 AAAA
1 AAAA
767323 ATCCAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.31
Consensus pattern (19 bp):
AAAATGTGTTGCGATAGTG
Found at i:767541 original size:14 final size:14
Alignment explanation
Indices: 767522--767575 Score: 62
Period size: 14 Copynumber: 4.1 Consensus size: 14
767512 TTCGTGAACA
767522 TTCGGTTATGTTCG
1 TTCGGTTATGTTCG
767536 TTCGGTTATGTTCG
1 TTCGGTTATGTTCG
*
767550 -T---TTATGTTTG
1 TTCGGTTATGTTCG
*
767560 TTTGGTTATGTTCG
1 TTCGGTTATGTTCG
767574 TT
1 TT
767576 TATGTTCATT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
10 8 0.24
11 1 0.03
13 1 0.03
14 24 0.71
ACGTcount: A:0.07, C:0.09, G:0.26, T:0.57
Consensus pattern (14 bp):
TTCGGTTATGTTCG
Found at i:767595 original size:24 final size:24
Alignment explanation
Indices: 767522--767582 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
767512 TTCGTGAACA
*
767522 TTCGGTTATGTTCGTTCGGTTATG
1 TTCGTTTATGTTCGTTCGGTTATG
* *
767546 TTCGTTTATGTTTGTTTGGTTATG
1 TTCGTTTATGTTCGTTCGGTTATG
767570 TTCGTTTATGTTC
1 TTCGTTTATGTTC
767583 ATTCATTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.08, C:0.10, G:0.25, T:0.57
Consensus pattern (24 bp):
TTCGTTTATGTTCGTTCGGTTATG
Found at i:768691 original size:16 final size:16
Alignment explanation
Indices: 768669--768713 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
768659 GGGTCTCCAA
768669 CGTTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
* *
768685 TGTTTATGTTTGTGTT
1 CGTTTATGTTCGTGTT
768701 CGTTTATGTTCGT
1 CGTTTATGTTCGT
768714 TTATTTATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.07, C:0.09, G:0.24, T:0.60
Consensus pattern (16 bp):
CGTTTATGTTCGTGTT
Found at i:769363 original size:21 final size:20
Alignment explanation
Indices: 769312--769430 Score: 114
Period size: 20 Copynumber: 5.8 Consensus size: 20
769302 TAGTCATCGC
* *
769312 AATCGCGTTGCGATTTACAT
1 AATCGCGTTGCGATTTTCAA
* *
769332 ATTCGCATTGCGATTTTCTAA
1 AATCGCGTTGCGATTTTC-AA
**
769353 AATCGCGTTGCGATAGTCAA
1 AATCGCGTTGCGATTTTCAA
*
769373 AATCGCATTGCGATTTTCCAA
1 AATCGCGTTGCGATTTT-CAA
*
769394 ATTCGCGTTGCGATTTT-AGA
1 AATCGCGTTGCGATTTTCA-A
* *
769414 GATCGCATTGCGATTTT
1 AATCGCGTTGCGATTTT
769431 GTTGGTCATT
Statistics
Matches: 80, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
19 1 0.01
20 46 0.57
21 33 0.41
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.36
Consensus pattern (20 bp):
AATCGCGTTGCGATTTTCAA
Found at i:769364 original size:41 final size:40
Alignment explanation
Indices: 769312--769430 Score: 141
Period size: 41 Copynumber: 2.9 Consensus size: 40
769302 TAGTCATCGC
* *
769312 AATCGCGTTGCGATTTACATATTCGCATTGCGATTTTCTAA
1 AATCGCGTTGCGATTTACA-AATCGCATTGCGATTTTCCAA
*
769353 AATCGCGTTGCGATAGT-CAAAATCGCATTGCGATTTTCCAA
1 AATCGCGTTGCGAT-TTAC-AAATCGCATTGCGATTTTCCAA
* * *
769394 ATTCGCGTTGCGATTTTAGAGATCGCATTGCGATTTT
1 AATCGCGTTGCGA-TTTACAAATCGCATTGCGATTTT
769431 GTTGGTCATT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
41 64 0.96
42 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.36
Consensus pattern (40 bp):
AATCGCGTTGCGATTTACAAATCGCATTGCGATTTTCCAA
Found at i:770845 original size:21 final size:21
Alignment explanation
Indices: 770821--770860 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
770811 CTTATTTAAA
770821 TATTTTTATTAAATATTTTGG
1 TATTTTTATTAAATATTTTGG
* *
770842 TATTTTTATTTAATTTTTT
1 TATTTTTATTAAATATTTT
770861 AAATAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (21 bp):
TATTTTTATTAAATATTTTGG
Found at i:774796 original size:8 final size:7
Alignment explanation
Indices: 774762--774799 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
774752 GAGTATGTAA
774762 ATTTTTC
1 ATTTTTC
774769 ATTTTTC
1 ATTTTTC
*
774776 ATTTTTT
1 ATTTTTC
774783 ATTTTCTC
1 ATTTT-TC
774791 A-TTTTC
1 ATTTTTC
774797 ATT
1 ATT
774800 AATAAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 3 0.11
7 22 0.81
8 2 0.07
ACGTcount: A:0.16, C:0.13, G:0.00, T:0.71
Consensus pattern (7 bp):
ATTTTTC
Found at i:775764 original size:15 final size:16
Alignment explanation
Indices: 775746--775776 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
775736 TTTTAAAACA
775746 ATTTTAAGA-AAAATT
1 ATTTTAAGACAAAATT
775761 ATTTTAAGACAAAATT
1 ATTTTAAGACAAAATT
775777 CGGTCTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTTTAAGACAAAATT
Found at i:777609 original size:10 final size:10
Alignment explanation
Indices: 777589--777622 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
777579 TCTCCAGTAC
777589 TCTCTCTTTTT
1 TCTCTC-TTTT
777600 TCTCTCTTTT
1 TCTCTCTTTT
*
777610 TCTCCCTTTT
1 TCTCTCTTTT
777620 TCT
1 TCT
777623 TCTGTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 16 0.73
11 6 0.27
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (10 bp):
TCTCTCTTTT
Found at i:778115 original size:3 final size:3
Alignment explanation
Indices: 778103--778157 Score: 85
Period size: 3 Copynumber: 18.0 Consensus size: 3
778093 ATATTTGTAT
778103 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA TAAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA T-AA TAA
778149 TAA TAA TAA
1 TAA TAA TAA
778158 AATTAAAATA
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.04
3 41 0.84
4 6 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:781052 original size:95 final size:95
Alignment explanation
Indices: 780889--781079 Score: 382
Period size: 95 Copynumber: 2.0 Consensus size: 95
780879 GTGACGTACT
780889 GAAACATATCACAAGCTAAATTTTCCTTATTAAGTAAATATTAAAAAGATAAATTATATGTTTAG
1 GAAACATATCACAAGCTAAATTTTCCTTATTAAGTAAATATTAAAAAGATAAATTATATGTTTAG
780954 TATTTACACTATCATTTTTATTTCGTTTTA
66 TATTTACACTATCATTTTTATTTCGTTTTA
780984 GAAACATATCACAAGCTAAATTTTCCTTATTAAGTAAATATTAAAAAGATAAATTATATGTTTAG
1 GAAACATATCACAAGCTAAATTTTCCTTATTAAGTAAATATTAAAAAGATAAATTATATGTTTAG
781049 TATTTACACTATCATTTTTATTTCGTTTTA
66 TATTTACACTATCATTTTTATTTCGTTTTA
781079 G
1 G
781080 TGCTTAAACT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (95 bp):
GAAACATATCACAAGCTAAATTTTCCTTATTAAGTAAATATTAAAAAGATAAATTATATGTTTAG
TATTTACACTATCATTTTTATTTCGTTTTA
Found at i:785796 original size:2 final size:2
Alignment explanation
Indices: 785791--785815 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
785781 AGTGTGTGGG
785791 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
785816 GAGTGAACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:788491 original size:10 final size:10
Alignment explanation
Indices: 788476--788501 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
788466 AAAAGTATAT
788476 TTTTTTTTCA
1 TTTTTTTTCA
788486 TTTTTTTTCA
1 TTTTTTTTCA
788496 TTTTTT
1 TTTTTT
788502 AAGGGTAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTTCA
Found at i:804035 original size:37 final size:36
Alignment explanation
Indices: 803977--804050 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 36
803967 AAGTTTACAG
*
803977 AATATGACAACACATCTAAATTTATAAAAAGATGACA
1 AATATGACAACACATCCAAATTTAT-AAAAGATGACA
* *
804014 AATATGACAACATATCCAAATTTATACAAGATGACA
1 AATATGACAACACATCCAAATTTATAAAAGATGACA
804050 A
1 A
804051 TATTTTCCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 11 0.32
37 23 0.68
ACGTcount: A:0.53, C:0.15, G:0.08, T:0.24
Consensus pattern (36 bp):
AATATGACAACACATCCAAATTTATAAAAGATGACA
Found at i:804631 original size:16 final size:16
Alignment explanation
Indices: 804610--804655 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
804600 GAATCTATGA
804610 AGGAATTGAAATCTGT
1 AGGAATTGAAATCTGT
*
804626 AGGAATTGAAATTTGT
1 AGGAATTGAAATCTGT
*
804642 AGGAATTGGAATCT
1 AGGAATTGAAATCT
804656 CAATCTGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (16 bp):
AGGAATTGAAATCTGT
Found at i:805204 original size:33 final size:33
Alignment explanation
Indices: 805167--805240 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
805157 CTAAACCCAA
* *
805167 ACCCGACCCGAATATCACACTTAAAAAAATCCG
1 ACCCGACCCGAATATCAAACTTAAAAAAACCCG
805200 ACCCGACCCGAATATCAAACTTAAAAAAACCCG
1 ACCCGACCCGAATATCAAACTTAAAAAAACCCG
*
805233 ACCTGACC
1 ACCCGACC
805241 TTACTCGAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.42, C:0.35, G:0.09, T:0.14
Consensus pattern (33 bp):
ACCCGACCCGAATATCAAACTTAAAAAAACCCG
Found at i:805277 original size:30 final size:31
Alignment explanation
Indices: 805243--805300 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
805233 ACCTGACCTT
805243 ACTCGAACCCAAAATTTTTT-AAAAAAACTG
1 ACTCGAACCCAAAATTTTTTGAAAAAAACTG
* *
805273 ACTCGATCCCGAAATTTTTTGAAAAAAA
1 ACTCGAACCCAAAATTTTTTGAAAAAAA
805301 AACCCGACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 18 0.72
31 7 0.28
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.28
Consensus pattern (31 bp):
ACTCGAACCCAAAATTTTTTGAAAAAAACTG
Found at i:805372 original size:33 final size:32
Alignment explanation
Indices: 805297--805379 Score: 95
Period size: 28 Copynumber: 2.7 Consensus size: 32
805287 TTTTTTGAAA
*
805297 AAAAAACCCGACCTGACCCGAATATCACACTT
1 AAAAAACCCGACCCGACCCGAATATCACACTT
*
805329 ACAAAA----ACCCGACCCGAATATCA-ATCTTT
1 AAAAAACCCGACCCGACCCGAATATCACA-C-TT
805358 AAAAAACCCGACCCGACCCGAA
1 AAAAAACCCGACCCGACCCGAA
805380 CCTGAATTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
27 1 0.02
28 17 0.40
29 7 0.17
32 5 0.12
33 12 0.29
ACGTcount: A:0.42, C:0.35, G:0.10, T:0.13
Consensus pattern (32 bp):
AAAAAACCCGACCCGACCCGAATATCACACTT
Found at i:805408 original size:31 final size:32
Alignment explanation
Indices: 805370--805442 Score: 121
Period size: 31 Copynumber: 2.3 Consensus size: 32
805360 AAAACCCGAC
**
805370 CCGACCCGAACCTGAATTTTT-TTAAAAAAAT
1 CCGACCCGAACCTGAATTTTTAAAAAAAAAAT
805401 CCGACCCGAACCTGAATTTTTAAAAAAAAAAT
1 CCGACCCGAACCTGAATTTTTAAAAAAAAAAT
805433 CCGACCCGAA
1 CCGACCCGAA
805443 TACCAAAAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 21 0.54
32 18 0.46
ACGTcount: A:0.41, C:0.26, G:0.11, T:0.22
Consensus pattern (32 bp):
CCGACCCGAACCTGAATTTTTAAAAAAAAAAT
Found at i:808423 original size:74 final size:74
Alignment explanation
Indices: 808314--808459 Score: 265
Period size: 74 Copynumber: 2.0 Consensus size: 74
808304 GAAGAACTAA
* *
808314 CCAAGGAATTCCAATTCAAACAACAACATGGAAAATAGCAGCTAAAATGGTTTACAAGCTACAAC
1 CCAAGGAATTCCAATTCAAACAACAACATGGAAAATAGCAGCTAAAAAGGTTTACAAGCCACAAC
808379 TATCAAACC
66 TATCAAACC
*
808388 CCAAGGAATTCTAATTCAAACAACAACATGGAAAATAGCAGCTAAAAAGGTTTACAAGCCACAAC
1 CCAAGGAATTCCAATTCAAACAACAACATGGAAAATAGCAGCTAAAAAGGTTTACAAGCCACAAC
808453 TATCAAA
66 TATCAAA
808460 AGCTAACACC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.47, C:0.22, G:0.12, T:0.18
Consensus pattern (74 bp):
CCAAGGAATTCCAATTCAAACAACAACATGGAAAATAGCAGCTAAAAAGGTTTACAAGCCACAAC
TATCAAACC
Found at i:809854 original size:11 final size:11
Alignment explanation
Indices: 809838--809900 Score: 69
Period size: 11 Copynumber: 5.9 Consensus size: 11
809828 GTATTAGAGA
809838 ATTTTTAATAT
1 ATTTTTAATAT
809849 ATTTTTAA-A-
1 ATTTTTAATAT
809858 ATTTTATAAT-T
1 ATTTT-TAATAT
***
809869 ATCAATAATAT
1 ATTTTTAATAT
809880 ATTTTTAATAT
1 ATTTTTAATAT
809891 ATTTTTAATA
1 ATTTTTAATA
809901 ATGTAATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
9 5 0.12
10 8 0.19
11 29 0.69
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTTTTAATAT
Found at i:813104 original size:36 final size:36
Alignment explanation
Indices: 813063--813137 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
813053 TTGATATATA
813063 TATAGTGATCTGATTACAATAGTTGATAAATAAAAT
1 TATAGTGATCTGATTACAATAGTTGATAAATAAAAT
813099 TATAGTGATCTGATTACAATAGTTGATAAATAAAAT
1 TATAGTGATCTGATTACAATAGTTGATAAATAAAAT
813135 TAT
1 TAT
813138 TTGAAAATGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.37
Consensus pattern (36 bp):
TATAGTGATCTGATTACAATAGTTGATAAATAAAAT
Found at i:813731 original size:4 final size:4
Alignment explanation
Indices: 813722--813758 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
813712 GACAAAATAA
813722 AAAT AAAT AAAT -AA- AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
813759 AATTCCGTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 4 0.13
4 27 0.87
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:813745 original size:18 final size:18
Alignment explanation
Indices: 813716--813761 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
813706 TACTTTGACA
813716 AAATAAAAATAAATAAAT
1 AAATAAAAATAAATAAAT
813734 AAA-AATAAATAAATAAAT
1 AAATAA-AAATAAATAAAT
813752 AAATAAAAAT
1 AAATAAAAAT
813762 TCCGTTCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (18 bp):
AAATAAAAATAAATAAAT
Found at i:813761 original size:14 final size:14
Alignment explanation
Indices: 813716--813758 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
813706 TACTTTGACA
813716 AAATAAAAATAAAT
1 AAATAAAAATAAAT
813730 AAATAAAAATAAAT
1 AAATAAAAATAAAT
813744 AAAT--AAATAAAT
1 AAATAAAAATAAAT
813756 AAA
1 AAA
813759 AATTCCGTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.38
14 18 0.62
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAAAATAAAT
Found at i:814522 original size:22 final size:22
Alignment explanation
Indices: 814496--814604 Score: 200
Period size: 22 Copynumber: 5.0 Consensus size: 22
814486 GCATGTGAAA
*
814496 TATGTCCCGAAGGACCTGTGAG
1 TATGTCCCGAAGGACCTATGAG
814518 TATGTCCCGAAGGACCTATGAG
1 TATGTCCCGAAGGACCTATGAG
*
814540 TATGTCTCGAAGGACCTATGAG
1 TATGTCCCGAAGGACCTATGAG
814562 TATGTCCCGAAGGACCTATGAG
1 TATGTCCCGAAGGACCTATGAG
814584 TATGTCCCGAAGGACCTATGA
1 TATGTCCCGAAGGACCTATGA
814605 AACCCTCGAC
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 84 1.00
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (22 bp):
TATGTCCCGAAGGACCTATGAG
Found at i:815100 original size:2 final size:2
Alignment explanation
Indices: 815071--815170 Score: 157
Period size: 2 Copynumber: 50.0 Consensus size: 2
815061 TACCTAGATC
* * *
815071 AT AT A- AT AT AT TT CAT AT TT AT AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
815113 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
815155 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
815171 CACTTCAATT
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
1 1 0.01
2 88 0.98
3 1 0.01
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:819574 original size:2 final size:2
Alignment explanation
Indices: 819559--819606 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
819549 TATGAATGCC
* *
819559 AT AT AT AA AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
819601 AT AT AT
1 AT AT AT
819607 GTGTGTGTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:820561 original size:27 final size:29
Alignment explanation
Indices: 820538--820595 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
820528 TATTTTATTA
820538 TATTTAATATTTTTTTGTAATTTATTTAAG
1 TATTTAA-ATTTTTTTGTAATTTATTTAAG
** *
820568 TATTTAAATTTTTTAATATTTTATTTAA
1 TATTTAAATTTTTTTGTAATTTATTTAA
820596 TTAATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (29 bp):
TATTTAAATTTTTTTGTAATTTATTTAAG
Found at i:820590 original size:17 final size:18
Alignment explanation
Indices: 820556--820588 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
820546 ATTTTTTTGT
820556 AATTTATTTAAGTATTTA
1 AATTTATTTAAGTATTTA
820574 AATTT-TTTAA-TATTT
1 AATTTATTTAAGTATTT
820589 TATTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
AATTTATTTAAGTATTTA
Found at i:822372 original size:27 final size:27
Alignment explanation
Indices: 822336--822399 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
822326 ACCCGATGCT
822336 GCCGCCGCCACTTAGTTTTATGACCCC
1 GCCGCCGCCACTTAGTTTTATGACCCC
*
822363 GCCGCTGCCACTTAGTTTTATGACCCC
1 GCCGCCGCCACTTAGTTTTATGACCCC
822390 GCCGCCGCCA
1 GCCGCCGCCA
822400 TCGTCACAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.14, C:0.42, G:0.20, T:0.23
Consensus pattern (27 bp):
GCCGCCGCCACTTAGTTTTATGACCCC
Found at i:822961 original size:34 final size:33
Alignment explanation
Indices: 822894--822981 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 33
822884 TAATACTTAC
*
822894 TTTATTTCGTT-AATTTGGTTGGATTTATTTTAA
1 TTTATTTTGTTAAATTT-GTTGGATTTATTTTAA
822927 TTTATTTTGTTAAATTTGTTGGACTTT-TTGTTAA
1 TTTATTTTGTTAAATTTGTTGGA-TTTATT-TTAA
* *
822961 TGTATTTTGGTTAATTTTGTT
1 TTTATTTT-GTTAAATTTGTT
822982 TATTACCATT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
33 18 0.38
34 19 0.40
35 11 0.23
ACGTcount: A:0.19, C:0.02, G:0.16, T:0.62
Consensus pattern (33 bp):
TTTATTTTGTTAAATTTGTTGGATTTATTTTAA
Found at i:826037 original size:21 final size:21
Alignment explanation
Indices: 825977--826045 Score: 93
Period size: 21 Copynumber: 3.2 Consensus size: 21
825967 CTGAGTGGCA
*
825977 TATGAATTATCTCGAAGGACC
1 TATGAGTTATCTCGAAGGACC
* *
825998 TGTGAGTATGTCTCGAAGGACC
1 TATGAGT-TATCTCGAAGGACC
*
826020 TATGAGTTATCCCGAAGGACC
1 TATGAGTTATCTCGAAGGACC
826041 TATGA
1 TATGA
826046 AACCCTCGAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 22 0.54
22 19 0.46
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (21 bp):
TATGAGTTATCTCGAAGGACC
Found at i:826890 original size:21 final size:20
Alignment explanation
Indices: 826866--826904 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
826856 ACTCATTCCT
826866 ACTCAATAATCACT-TCCTTAA
1 ACTCAA-AAT-ACTATCCTTAA
826887 ACTCAAAATACTATCCTT
1 ACTCAAAATACTATCCTT
826905 TATATGACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 8 0.47
21 6 0.35
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.33
Consensus pattern (20 bp):
ACTCAAAATACTATCCTTAA
Found at i:828832 original size:15 final size:16
Alignment explanation
Indices: 828806--828836 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
828796 CTTGCATTAT
828806 GCATGTTGATAATTGA
1 GCATGTTGATAATTGA
828822 GCATG-TGATAATTGA
1 GCATGTTGATAATTGA
828837 AAAGCGCGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (16 bp):
GCATGTTGATAATTGA
Done.