Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007938.1 Hibiscus syriacus cultivar Beakdansim tig00110348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2808856
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 14
Found at i:1523111 original size:22 final size:22
Alignment explanation
Indices: 1523086--1523136 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
1523076 GATGGAGATA
1523086 GACGGATTTCGCCAAAGATGGG
1 GACGGATTTCGCCAAAGATGGG
*
1523108 GACGGATTTCGCCAGAGATGGG
1 GACGGATTTCGCCAAAGATGGG
1523130 GACGGAT
1 GACGGAT
1523137 GTCATCGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.39, T:0.18
Consensus pattern (22 bp):
GACGGATTTCGCCAAAGATGGG
Found at i:1523316 original size:20 final size:20
Alignment explanation
Indices: 1523291--1523336 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
1523281 TAAACGCGCT
1523291 TTGCGAATTTGACTTATGTG
1 TTGCGAATTTGACTTATGTG
*
1523311 TTGCGAATTTGACTTCTGTG
1 TTGCGAATTTGACTTATGTG
1523331 TTGCGA
1 TTGCGA
1523337 TTTACAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.17, C:0.13, G:0.26, T:0.43
Consensus pattern (20 bp):
TTGCGAATTTGACTTATGTG
Found at i:1523354 original size:40 final size:39
Alignment explanation
Indices: 1523310--1523401 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 39
1523300 TGACTTATGT
** * **
1523310 GTTGCGAATTTGACTTCTGTGTTGCGATTTACAAATTCGC
1 GTTGCGAATTTGA-AACTGGGTTGCGAAATACAAATTCGC
* *
1523350 GTTGCGAATTTGGAAACTGGGTTGCGAAATAGAAGTTCGC
1 GTTGCGAATTT-GAAACTGGGTTGCGAAATACAAATTCGC
1523390 GTTGCGAATTTG
1 GTTGCGAATTTG
1523402 TTGGTCATTT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.02
40 41 0.93
41 2 0.05
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (39 bp):
GTTGCGAATTTGAAACTGGGTTGCGAAATACAAATTCGC
Found at i:1536045 original size:20 final size:20
Alignment explanation
Indices: 1536017--1536065 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
1536007 TTACCAATAA
*
1536017 TATCGATACCTAGAAATCAG
1 TATCGATACCCAGAAATCAG
* **
1536037 TATCAATACCCAGAGGTCAG
1 TATCGATACCCAGAAATCAG
1536057 TATCGATAC
1 TATCGATAC
1536066 TGAGGGGCTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.24
Consensus pattern (20 bp):
TATCGATACCCAGAAATCAG
Found at i:1557521 original size:45 final size:46
Alignment explanation
Indices: 1557422--1557538 Score: 139
Period size: 45 Copynumber: 2.6 Consensus size: 46
1557412 CAATATGCAT
** * * *
1557422 TTTCATTTATGGCAACAGTTCATGCCTTTTTATATACTATTATATA
1 TTTCATTTATGGCATTATTTCATGCCTTTTTATACACTATTATACA
* *
1557468 TTTTATTTATGGCATTATTTCATGCC-TTTTATACACTGTTATACA
1 TTTCATTTATGGCATTATTTCATGCCTTTTTATACACTATTATACA
*
1557513 TTTCATTTATGACATCT-TTTCATGCC
1 TTTCATTTATGGCAT-TATTTCATGCC
1557539 AATAATGCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 38 0.62
46 23 0.38
ACGTcount: A:0.25, C:0.17, G:0.09, T:0.50
Consensus pattern (46 bp):
TTTCATTTATGGCATTATTTCATGCCTTTTTATACACTATTATACA
Found at i:1557926 original size:237 final size:237
Alignment explanation
Indices: 1557507--1557964 Score: 736
Period size: 237 Copynumber: 1.9 Consensus size: 237
1557497 TATACACTGT
*
1557507 TATACATTTCATTTATGACATCTTTTCATGCCAATAATGCACCCATATGCATTATTCTATTATGC
1 TATACATTTCAGTTATGACATCTTTTCATGCCAATAATGCACCCATATGCATTATTCTATTATGC
* * * *
1557572 TCACAATGTACCCATATATATTTCAGCTATGTCATCCTTTCATGCCAATAATGCACTCATATGCA
66 TCACAATGTACCCATATACATTTCAACTATGGCATCCTTTCATGCCAATAATGCACCCATATGCA
* *** * *
1557637 TTATTCTTTTATGCTGGCAATGTACCCATATACATTTCAGTTATGGCATCCTTTCATGCCAATAA
131 TTATTCTTTTACGCTAAAAATGTACCCATATACATTTCAGCTATGACATCCTTTCATGCCAATAA
* *
1557702 TGTACTCATATGCATTATTCTTTTACACTAACAATGTACCCA
196 TGCACCCATATGCATTATTCTTTTACACTAACAATGTACCCA
* ** *
1557744 TATACATTTTAGTTATGGTATCTTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
1 TATACATTTCAGTTATGACATCTTTTCATGCCAATAATGCACCCATATGCATTATTCTATTATGC
*
1557809 TGACAATGTACCCATATACATTTCAACTATGGCATCCTTTCATGCCAATAATGCACCCATATGCA
66 TCACAATGTACCCATATACATTTCAACTATGGCATCCTTTCATGCCAATAATGCACCCATATGCA
* *
1557874 TTATTCTTTTACGCTAAAAATGTACCTATATACATTTCAGCTATGACATCCTTTCATGTCAATAA
131 TTATTCTTTTACGCTAAAAATGTACCCATATACATTTCAGCTATGACATCCTTTCATGCCAATAA
1557939 TGCACCCATATGCATTATTCTTTTAC
196 TGCACCCATATGCATTATTCTTTTAC
1557965 TCAACGGTAC
Statistics
Matches: 201, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
237 201 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.38
Consensus pattern (237 bp):
TATACATTTCAGTTATGACATCTTTTCATGCCAATAATGCACCCATATGCATTATTCTATTATGC
TCACAATGTACCCATATACATTTCAACTATGGCATCCTTTCATGCCAATAATGCACCCATATGCA
TTATTCTTTTACGCTAAAAATGTACCCATATACATTTCAGCTATGACATCCTTTCATGCCAATAA
TGCACCCATATGCATTATTCTTTTACACTAACAATGTACCCA
Found at i:1557964 original size:79 final size:79
Alignment explanation
Indices: 1557507--1557964 Score: 664
Period size: 79 Copynumber: 5.8 Consensus size: 79
1557497 TATACACTGT
** * * * *
1557507 TATACATTTCATTTATGACATCTTTTCATGCCAATAATGCACCCATATGCATTATTCTATTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTACGC
*
1557572 TCACAATGTACCCA
66 TAACAATGTACCCA
* * * *
1557586 TATATATTTCAGCTATGTCATCCTTTCATGCCAATAATGCACTCATATGCATTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTACGC
**
1557651 TGGCAATGTACCCA
66 TAACAATGTACCCA
* * * *
1557665 TATACATTTCAGTTATGGCATCCTTTCATGCCAATAATGTACTCATATGCATTATTCTTTTACAC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTACGC
1557730 TAACAATGTACCCA
66 TAACAATGTACCCA
* * * * *
1557744 TATACATTTTAGTTATGGTATCTTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTACGC
*
1557809 TGACAATGTACCCA
66 TAACAATGTACCCA
*
1557823 TATACATTTCAACTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTACGC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTACGC
* *
1557888 TAAAAATGTACCTA
66 TAACAATGTACCCA
* *
1557902 TATACATTTCAGCTATGACATCCTTTCATGTCAATAATGCACCCATATGCATTATTCTTTTAC
1 TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTAC
1557965 TCAACGGTAC
Statistics
Matches: 342, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 342 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.38
Consensus pattern (79 bp):
TATACATTTCAGCTATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTACGC
TAACAATGTACCCA
Found at i:1558073 original size:68 final size:68
Alignment explanation
Indices: 1557983--1558169 Score: 295
Period size: 68 Copynumber: 2.8 Consensus size: 68
1557973 ACTTAACTGC
* * *
1557983 TCATCTAACT-AGCATAATTGACACTTTTCTGTCAAATACACAGTTAGGCCTCAAAGGCACTTAG
1 TCATCTAACTGA-CATAATTGACACATTTCTGTCAAATGCACAGTTAGGCCTCAAAGACACTTAG
1558047 CCTT
65 CCTT
* *
1558051 TCATCTAACTGACATAATTGACACATTTCTTTCAAATGCACAGTTAAGCCTCAAAGACACTTAGC
1 TCATCTAACTGACATAATTGACACATTTCTGTCAAATGCACAGTTAGGCCTCAAAGACACTTAGC
1558116 CTT
66 CTT
* *
1558119 TCATCTAATTGGCATAATTGACACATTTCTGTCAAATGCACAGTTAGGCCT
1 TCATCTAACTGACATAATTGACACATTTCTGTCAAATGCACAGTTAGGCCT
1558170 TTAATGTTTT
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
68 108 0.99
69 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (68 bp):
TCATCTAACTGACATAATTGACACATTTCTGTCAAATGCACAGTTAGGCCTCAAAGACACTTAGC
CTT
Found at i:1558739 original size:59 final size:59
Alignment explanation
Indices: 1558517--1558744 Score: 300
Period size: 59 Copynumber: 3.9 Consensus size: 59
1558507 TTTCCCATAC
* * * *
1558517 GGAAATTCATACACTTAGGATGAATTT-CTTATCATTTTAGCACAC-ATGGTGCCCCATCT
1 GGAAATTCATACACTTAGTATG-ATTTCCTTACCATTTTAGCACACTA-AGTGCCCTATCT
* * * * * * *
1558576 AGAAATTCATAGACTTAGTATGAATTCCTT-CTCCTGTTAGCACACAAAGTGCCCTATAT
1 GGAAATTCATACACTTAGTATGATTTCCTTAC-CATTTTAGCACACTAAGTGCCCTATCT
*
1558635 CGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACTAAGTGCCCTATCT
1 GGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACTAAGTGCCCTATCT
1558694 GGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACTAAGTG
1 GGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACTAAGTG
1558745 TCCTTTGGTA
Statistics
Matches: 147, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
58 3 0.02
59 142 0.97
60 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.34
Consensus pattern (59 bp):
GGAAATTCATACACTTAGTATGATTTCCTTACCATTTTAGCACACTAAGTGCCCTATCT
Found at i:1561791 original size:3 final size:3
Alignment explanation
Indices: 1561785--1561895 Score: 190
Period size: 3 Copynumber: 37.3 Consensus size: 3
1561775 CAATCTGTTG
*
1561785 TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1561833 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1561880 TTA TTA -TA TATA TTA T
1 TTA TTA TTA T-TA TTA T
1561896 AAACATTATG
Statistics
Matches: 103, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
2 4 0.04
3 96 0.93
4 3 0.03
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:1562726 original size:46 final size:46
Alignment explanation
Indices: 1562673--1562802 Score: 194
Period size: 46 Copynumber: 2.8 Consensus size: 46
1562663 TTAAATTTTT
*
1562673 ATAAATTAAATTAATGAAGATCATCGTTAGTGGTGTTCGACGTGTA
1 ATAAATTAAATTAATGAAGATCATCGTTAGTGGTGTTCGACGTATA
1562719 ATAAATTAAATTAATG--GTACTCATCGTTAGTGGTGTTCGACGTATA
1 ATAAATTAAATTAATGAAG-A-TCATCGTTAGTGGTGTTCGACGTATA
*
1562765 ATAAATTAAATTAATGATA-CTCATCGTTAGTGGTGTTC
1 ATAAATTAAATTAATGA-AGATCATCGTTAGTGGTGTTC
1562803 AATAGTACTC
Statistics
Matches: 77, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 75 0.97
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (46 bp):
ATAAATTAAATTAATGAAGATCATCGTTAGTGGTGTTCGACGTATA
Found at i:1564441 original size:40 final size:39
Alignment explanation
Indices: 1564394--1564502 Score: 130
Period size: 40 Copynumber: 2.8 Consensus size: 39
1564384 AGACGTCATG
* *
1564394 CACTCCTAGAGTTTTTATATTTGGCCTGAAGACGTTGTG
1 CACTCCTAAAGTTTTTATATTTGGCCTGAAGACGTTGTA
* * *
1564433 CGACTCCTAAAGTCTTTATGTTTTGCCTGAAGACGTTGTA
1 C-ACTCCTAAAGTTTTTATATTTGGCCTGAAGACGTTGTA
* * *
1564473 CACTCCTAAAATTTATCTA-TTGGCCTGAAG
1 CACTCCTAAAGTTTTTATATTTGGCCTGAAG
1564503 TCGCCGTACA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
38 10 0.17
39 14 0.24
40 34 0.59
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (39 bp):
CACTCCTAAAGTTTTTATATTTGGCCTGAAGACGTTGTA
Found at i:1565973 original size:35 final size:35
Alignment explanation
Indices: 1565928--1566021 Score: 136
Period size: 35 Copynumber: 2.7 Consensus size: 35
1565918 TTACAGTGGT
* * *
1565928 TAAT-ATTTTGCTTAGGAATTTGCTTAGGTAGGGC
1 TAATAATTTTGCTAAGGAAATTGCTTAAGTAGGGC
*
1565962 TAATAATTTTGCTAAGGAAATTGCTTAAGTAGGGT
1 TAATAATTTTGCTAAGGAAATTGCTTAAGTAGGGC
*
1565997 TAATAAATTTGCTAAGGAAATTGCT
1 TAATAATTTTGCTAAGGAAATTGCT
1566022 CATCTCATTG
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
34 4 0.07
35 50 0.93
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.38
Consensus pattern (35 bp):
TAATAATTTTGCTAAGGAAATTGCTTAAGTAGGGC
Found at i:1568082 original size:13 final size:13
Alignment explanation
Indices: 1568064--1568097 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
1568054 AGCATTGTGA
*
1568064 AAAGAAAATAATG
1 AAAGAAAATAACG
1568077 AAAGAAAATAACG
1 AAAGAAAATAACG
1568090 AAAGAAAA
1 AAAGAAAA
1568098 GTGCAGATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.74, C:0.03, G:0.15, T:0.09
Consensus pattern (13 bp):
AAAGAAAATAACG
Found at i:1574260 original size:15 final size:15
Alignment explanation
Indices: 1574242--1574271 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1574232 TAATCATTTT
1574242 AAATTATAAAAATAA
1 AAATTATAAAAATAA
*
1574257 AAATTATATAAATAA
1 AAATTATAAAAATAA
1574272 GATTTGATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATTATAAAAATAA
Found at i:1576446 original size:19 final size:19
Alignment explanation
Indices: 1576422--1576461 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
1576412 TTTATATCTC
*
1576422 TCATTTCATCTTCTTCCTT
1 TCATTTCATCTACTTCCTT
*
1576441 TCATTTCTTCTACTTCCTT
1 TCATTTCATCTACTTCCTT
1576460 TC
1 TC
1576462 TACACATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.10, C:0.33, G:0.00, T:0.57
Consensus pattern (19 bp):
TCATTTCATCTACTTCCTT
Found at i:1580964 original size:21 final size:21
Alignment explanation
Indices: 1580902--1581002 Score: 71
Period size: 23 Copynumber: 4.6 Consensus size: 21
1580892 ACACAACAGT
* *
1580902 GTGTATCGATGCACATTCAAA
1 GTGTATCGATGCATATTCATA
* * *
1580923 GAATGCATCGGTGCATCTTCATA
1 G--TGTATCGATGCATATTCATA
1580946 GTGTATCGATGCATATTCA-A
1 GTGTATCGATGCATATTCATA
* *
1580966 GGGATGCATCGGTGCACT-TTCATA
1 --G-TGTATCGATGCA-TATTCATA
1580990 GTGTATCGATGCA
1 GTGTATCGATGCA
1581003 CAGTGTACAA
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
20 1 0.02
21 26 0.43
22 2 0.03
23 30 0.49
24 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (21 bp):
GTGTATCGATGCATATTCATA
Found at i:1580964 original size:44 final size:44
Alignment explanation
Indices: 1580902--1581004 Score: 163
Period size: 44 Copynumber: 2.3 Consensus size: 44
1580892 ACACAACAGT
1580902 GTGTATCGATGCACATTCAAAGAATGCATCGGTGCA-TCTTCATA
1 GTGTATCGATGCACATTCAAAGAATGCATCGGTGCACT-TTCATA
* * *
1580946 GTGTATCGATGCATATTCAAGGGATGCATCGGTGCACTTTCATA
1 GTGTATCGATGCACATTCAAAGAATGCATCGGTGCACTTTCATA
1580990 GTGTATCGATGCACA
1 GTGTATCGATGCACA
1581005 GTGTACAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 53 0.98
45 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (44 bp):
GTGTATCGATGCACATTCAAAGAATGCATCGGTGCACTTTCATA
Found at i:1586380 original size:64 final size:64
Alignment explanation
Indices: 1586268--1586422 Score: 163
Period size: 64 Copynumber: 2.4 Consensus size: 64
1586258 AGTTGACCTA
** * * * * *
1586268 GTGCATCGGTACACTAATTA-CATTCGATGTTTCAAAAGAGCCAGGAGTGTATCGATGTATGGTC
1 GTGCATCGGTACAC-AAAAAGCATTCGATGTTTCAAAAGAACCAAGAGTGCATCGATGCATAGT-
1586332 T
64 T
* * * *
1586333 GTGCA-CGGTACATAAAATGCTTTCGATGTTTCAATAA-AATCAAGAGTGCATCGATGCATAGTT
1 GTGCATCGGTACACAAAAAGCATTCGATGTTTCAA-AAGAACCAAGAGTGCATCGATGCATAGTT
1586396 GTGCATCGGTACACAAAAAGCATTCGA
1 GTGCATCGGTACACAAAAAGCATTCGA
1586423 ATTAGGGTGT
Statistics
Matches: 73, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
63 8 0.11
64 58 0.79
65 7 0.10
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (64 bp):
GTGCATCGGTACACAAAAAGCATTCGATGTTTCAAAAGAACCAAGAGTGCATCGATGCATAGTT
Found at i:1588441 original size:15 final size:15
Alignment explanation
Indices: 1588423--1588452 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1588413 CACTATGATC
1588423 ATCATTACCACCACT
1 ATCATTACCACCACT
*
1588438 ATCATTATCACCACT
1 ATCATTACCACCACT
1588453 TACGTCGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (15 bp):
ATCATTACCACCACT
Found at i:1588447 original size:21 final size:21
Alignment explanation
Indices: 1588403--1588447 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1588393 GTACATACTT
* *
1588403 TCATTATCACCACTATGATCA
1 TCATTACCACCACTATCATCA
*
1588424 TCATTACCACCACTATCATTA
1 TCATTACCACCACTATCATCA
1588445 TCA
1 TCA
1588448 CCACTTACGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.31, G:0.02, T:0.33
Consensus pattern (21 bp):
TCATTACCACCACTATCATCA
Found at i:1588450 original size:18 final size:18
Alignment explanation
Indices: 1588403--1588451 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
1588393 GTACATACTT
*
1588403 TCATTATCACCACTATGA
1 TCATTATCACCACCATGA
* *
1588421 TCATCATTACCACCACT-A
1 TCATTATCACCACCA-TGA
1588439 TCATTATCACCAC
1 TCATTATCACCAC
1588452 TTACGTCGAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 24 0.96
19 1 0.04
ACGTcount: A:0.33, C:0.35, G:0.02, T:0.31
Consensus pattern (18 bp):
TCATTATCACCACCATGA
Found at i:1590254 original size:20 final size:20
Alignment explanation
Indices: 1590229--1590272 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
1590219 CAAGTTGAGG
1590229 ACACTTGAAGAAGGGTTAGA
1 ACACTTGAAGAAGGGTTAGA
1590249 ACACTTGAAGAAGGGTTAGA
1 ACACTTGAAGAAGGGTTAGA
1590269 ACAC
1 ACAC
1590273 CTATCCAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (20 bp):
ACACTTGAAGAAGGGTTAGA
Found at i:1591378 original size:20 final size:20
Alignment explanation
Indices: 1591350--1591392 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
1591340 TTTTCTTTTT
*
1591350 AAAGAAAAAATG-GATTTTGA
1 AAAG-AAAAATGAAATTTTGA
*
1591370 AAAGCAAAATGAAATTTTGA
1 AAAGAAAAATGAAATTTTGA
1591390 AAA
1 AAA
1591393 AGGATTTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.58, C:0.02, G:0.16, T:0.23
Consensus pattern (20 bp):
AAAGAAAAATGAAATTTTGA
Found at i:1593291 original size:21 final size:21
Alignment explanation
Indices: 1593252--1593292 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1593242 AGTAAAAGTT
* *
1593252 TACCTAAAACATTATTATTTC
1 TACCTAAAACATCAATATTTC
1593273 TACCTAAAACATCAATATTT
1 TACCTAAAACATCAATATTT
1593293 TTTAACATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (21 bp):
TACCTAAAACATCAATATTTC
Found at i:1595454 original size:21 final size:22
Alignment explanation
Indices: 1595400--1595442 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
1595390 ATTAATTAAC
*
1595400 TTTATCAAATTTAAATTATAAG
1 TTTATCAAATTTAAAATATAAG
1595422 TTTATCAAATTTAAAATATAA
1 TTTATCAAATTTAAAATATAA
1595443 TGTTAGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (22 bp):
TTTATCAAATTTAAAATATAAG
Found at i:1597875 original size:81 final size:80
Alignment explanation
Indices: 1597678--1598136 Score: 458
Period size: 81 Copynumber: 5.7 Consensus size: 80
1597668 GGCGGTGGCC
* * * * * * *
1597678 GACGCTCTGAAGATGATTCCTGTTGGTTCTGTCGATAAGCTAGCGCTGATGAACCTTCATTTTTG
1 GACGCTCTGAAGAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTCA-TTTTG
* *
1597743 GAAGC--CGTCTTGTT
65 GAATCATGGTCTTGTT
* ** * *
1597757 GATGCTCCAAAGAAGATTG-TCGTTTGCTCTCTTGAGAAGCTGGTGCTGATGAACCTTCGATTTT
1 GACGCTCTGAAGAAGATTGCT-GTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTC-ATTTT
* *
1597821 GGAATCATTGTCTTGCT
64 GGAATCATGGTCTTGTT
* *
1597838 GACGCTCTTAAGAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATCTTTG
1 GACGCTCTGAAGAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTCAT-TTTG
*
1597903 GAATCCAT-GTCTTGCT
65 GAAT-CATGGTCTTGTT
* * * * * *
1597919 GACGTTCTGAGGACGATTGCTGTTGGTTCTCTTGAGAATCTGGTGCTAATGAATCTTCATTTTTG
1 GACGCTCTGAAGAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTCA-TTTTG
* *
1597984 GAATCCTGGTCATGTT
65 GAATCATGGTCTTGTT
* * * * * * *
1598000 GACACTCCGAATACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTAATGAATCTTCGTTTTTG
1 GACGCTCTGAAGAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTC-ATTTTG
*
1598065 GAATCCTGGTCTTGTT
65 GAATCATGGTCTTGTT
* * * * * *
1598081 GACACTCTGAAGAAGATTGATGTTCGTTCTGTTGAGAAGCTGGGGCCGATGAACCT
1 GACGCTCTGAAGAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCT
1598137 GTCTTGCTGA
Statistics
Matches: 320, Mismatches: 50, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.00
79 53 0.17
80 5 0.02
81 256 0.80
82 5 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.36
Consensus pattern (80 bp):
GACGCTCTGAAGAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTCATTTTGG
AATCATGGTCTTGTT
Found at i:1598020 original size:162 final size:159
Alignment explanation
Indices: 1597686--1598468 Score: 690
Period size: 162 Copynumber: 4.9 Consensus size: 159
1597676 CCGACGCTCT
* * * * * * *
1597686 GAAGATGATTCCTGTTGGTTCTGTCGATAAGCTAGCGCTGATGAACCTTCATTTTTGGAAGCC-G
1 GAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATTTTTGGAATCCTG
* ** * * *
1597750 TCTTGTTGATGCTCCAAAGAAGATTGTCGTTTGCTCTCTTGAGAAGCTGGTGCTGATGAACCTTC
66 TCTTGCTGACACTCCGAAGAAGATTGT-GTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTC
* * *
1597815 GATTTTGGAATCATTGTCTTGCTGACGCTCT
130 GATTTTGGAATC-CTGTCTTGCTGACACTCA
* * *
1597846 TAAGAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATCTTTGGAATCCAT
1 GAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATTTTTGGAATCC-T
** * * * * * *
1597911 GTCTTGCTGACGTTCTGAGGACGATTGCTGTTGGTTCTCTTGAGAATCTGGTGCTAATGAATCTT
65 GTCTTGCTGACACTCCGAAGAAGATTG-TGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTT
* * *
1597976 C-ATTTTTGGAATCCTGGTCATGTTGACACTCC
129 CGA-TTTTGGAATCCT-GTCTTGCTGACACTCA
* * * * *
1598008 GAATACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTAATGAATCTTCGTTTTTGGAATCCTG
1 GAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATTTTTGGAATCCT-
* * * *
1598073 GTCTTGTTGACACTCTGAAGAAGATTGATGTTCGTTCTGTTGAGAAGCT-G-G--G--G---C--
65 GTCTTGCTGACACTCCGAAGAAGATTG-TGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTT
*
1598127 CGA---T-GAA-CCTGTCTTGCTGACATTCA
129 CGATTTTGGAATCCTGTCTTGCTGACACTCA
* * * ** *
1598153 GAAGACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGGTGAACCTTTGTTTATGGAATCCTT
1 GAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATTTTTGGAATCC-T
* * *
1598218 GTCATGCTGACACTCCGAAGAAGGTTGTTGTTGGTTCTCTTGAGAAGCCT-GCGCTGATGAACCT
65 GTCTTGCTGACACTCCGAAGAAGATTG-TGTTGGTTCTCTTGAGAAG-CTGGTGCTGATGAACCT
* * **
1598282 TC-ATCTCTGGAATCCTCATCTTGCTGACGTTCA
128 TCGAT-TTTGGAATCCT-GTCTTGCTGACACTCA
* *
1598315 GAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTCATATTTGGAATCCTC
1 GAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATTTTTGGAATCCT-
* * * * * * *
1598380 GTCTTGATGACACTCCGAAGAAGATTGTTGTCGATTATGTTGAGAA-TTGGGAGCTGATGAACCT
65 GTCTTGCTGACACTCCGAAGAAGATTG-TGTTGGTTCTCTTGAGAAGCT-GGTGCTGATGAACCT
**
1598444 TCTTTTTTGGAATCCTTGTCTTGCT
128 TCGATTTTGGAATCC-TGTCTTGCT
1598469 AACCCCCCAA
Statistics
Matches: 506, Mismatches: 86, Indels: 60
0.78 0.13 0.09
Matches are distributed among these distances:
145 106 0.21
146 7 0.01
147 4 0.01
148 1 0.00
149 1 0.00
151 2 0.00
152 1 0.00
153 1 0.00
154 1 0.00
155 1 0.00
156 2 0.00
159 1 0.00
160 59 0.12
161 8 0.02
162 308 0.61
163 3 0.01
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.35
Consensus pattern (159 bp):
GAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATTTTTGGAATCCTG
TCTTGCTGACACTCCGAAGAAGATTGTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTCG
ATTTTGGAATCCTGTCTTGCTGACACTCA
Found at i:1598198 original size:64 final size:64
Alignment explanation
Indices: 1598073--1598200 Score: 166
Period size: 64 Copynumber: 2.0 Consensus size: 64
1598063 TGGAATCCTG
* * * * *
1598073 GTCTTGTTGACACTCTGAAGAAGATTGATGTTCGTTCTGTTGAGAAGCTGGGGCCGATGAACCT
1 GTCTTGCTGACACTCAGAAGAAGATTGATGTTCGTTCTCTTGAGAAACTGGCGCCGATGAACCT
* * * * *
1598137 GTCTTGCTGACATTCAGAAGACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGGTGAACCT
1 GTCTTGCTGACACTCAGAAGAAGATTGATGTTCGTTCTCTTGAGAAACTGGCGCCGATGAACCT
1598201 TTGTTTATGG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (64 bp):
GTCTTGCTGACACTCAGAAGAAGATTGATGTTCGTTCTCTTGAGAAACTGGCGCCGATGAACCT
Found at i:1598277 original size:145 final size:145
Alignment explanation
Indices: 1598012--1598281 Score: 362
Period size: 145 Copynumber: 1.9 Consensus size: 145
1598002 CACTCCGAAT
* * * * * *
1598012 ACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTAATGAATCTTCGTTTTTGGAATCCTGGTCT
1 ACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTAATGAACCTTCGTTTATGGAATCCTGGTCA
* * * *
1598077 TGTTGACACTCTGAAGAAGATTGATGTTCGTTCTGTTGAGAAGCTGGGGCCGATGAACCTGTCTT
66 TGCTGACACTCCGAAGAAGATTGATGTTCGTTCTCTTGAGAAGCTGGCGCCGATGAACCTGTCTT
1598142 GCTGACATTCAGAAG
131 GCTGACATTCAGAAG
** * *
1598157 ACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGGTGAACCTTTGTTTATGGAATCCTTGTCA
1 ACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTAATGAACCTTCGTTTATGGAATCCTGGTCA
* * * *
1598222 TGCTGACACTCCGAAGAAGGTTGTTGTTGGTTCTCTTGAGAAGCCT-GCGCTGATGAACCT
66 TGCTGACACTCCGAAGAAGATTGATGTTCGTTCTCTTGAGAAG-CTGGCGCCGATGAACCT
1598282 TCATCTCTGG
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
145 104 0.98
146 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.34
Consensus pattern (145 bp):
ACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTAATGAACCTTCGTTTATGGAATCCTGGTCA
TGCTGACACTCCGAAGAAGATTGATGTTCGTTCTCTTGAGAAGCTGGCGCCGATGAACCTGTCTT
GCTGACATTCAGAAG
Found at i:1598279 original size:81 final size:80
Alignment explanation
Indices: 1598136--1598539 Score: 352
Period size: 81 Copynumber: 5.0 Consensus size: 80
1598126 CCGATGAACC
* * * * *
1598136 TGTCTTGCTGACATTCAGAAGACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGGTGAACCT
1 TGTCTTGCTGACACTCAGAAGAAGATTGTTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCT
**
1598201 TTGTTTATGGAATCCT
66 TCATTT-TGGAATCCT
* * *
1598217 TGTCATGCTGACACTCCGAAGAAGGTTGTTGTTGGTTCTCTTGAGAAGCCT-GCGCTGATGAACC
1 TGTCTTGCTGACACTCAGAAGAAGATTGTTGTTGGTTCTCTTGAGAAG-CTGGCGCTGATGAACC
*
1598281 TTCATCTCTGGAATCCT
65 TTCAT-TTTGGAATCCT
** ** * * *
1598298 CATCTTGCTGACGTTCAGAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCT
1 TGTCTTGCTGACACTCAGAAGAAGATTGTTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCT
1598363 TCATATTTGGAATCCT
66 TCAT-TTTGGAATCCT
* * * * * * * * *
1598379 CGTCTTGATGACACTCCGAAGAAGATTGTTGTCGATTATGTTGAGAA-TTGGGAGCTGATGAACC
1 TGTCTTGCTGACACTCAGAAGAAGATTGTTGTTGGTTCTCTTGAGAAGCT-GGCGCTGATGAACC
*
1598443 TTCTTTTTTGGAATCCT
65 TTC-ATTTTGGAATCCT
* * * * * * * * *
1598460 TGTCTTGCTAACCCCCCA-AAGAAGATTGATGTAGGTTATGTTGAGAAGTTGGC-C--CTGAACC
1 TGTCTTGCTGA-CACTCAGAAGAAGATTGTTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACC
*
1598521 TTCTTTCTTGGAATCCT
65 TTCATT-TTGGAATCCT
1598538 TG
1 TG
1598540 GCTCGTTGGG
Statistics
Matches: 267, Mismatches: 48, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
77 3 0.01
78 21 0.08
80 4 0.01
81 230 0.86
82 9 0.03
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.34
Consensus pattern (80 bp):
TGTCTTGCTGACACTCAGAAGAAGATTGTTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCT
TCATTTTGGAATCCT
Found at i:1598344 original size:226 final size:226
Alignment explanation
Indices: 1597910--1598362 Score: 566
Period size: 226 Copynumber: 2.0 Consensus size: 226
1597900 TTGGAATCCA
* * * * * * *
1597910 TGTCTTGCTGACGTTCTGAGGACGATTGCTGTTGGTTCTCTTGAGAATCTGGTGCTAATGAATCT
1 TGTCTTGCTGACATTCAGAAGACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTAATGAACCT
* * * *
1597975 TCATTTTTGGAATCCTGGTCATGTTGACACTCCGAATACGATTGCTGTTGGTTCTCTTGAGAAGC
66 TCATTTATGGAATCCTGGTCATGCTGACACTCCGAAGAAGATTGCTGTTGGTTCTCTTGAGAAGC
* * * * * ** * *
1598040 TGGTGCTAATGAATCTTCGTTTTTGGAATCCTGGTCTTGTTGACACTCTGAAGAAGATTGATGTT
131 TGGCGCTAATGAACCTTCATCTCTGGAATCCTCATCTTGCTGACACTCAGAAGAAGATTGATGTT
*
1598105 CGTTCTGTTGAGAAGCTGGGGCCGATGAACC
196 CGTTCTCTTGAGAAGCTGGGGCCGATGAACC
**
1598136 TGTCTTGCTGACATTCAGAAGACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGGTGAACCT
1 TGTCTTGCTGACATTCAGAAGACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTAATGAACCT
** * * *
1598201 TTGTTTATGGAATCCTTGTCATGCTGACACTCCGAAGAAGGTTGTTGTTGGTTCTCTTGAGAAGC
66 TCATTTATGGAATCCTGGTCATGCTGACACTCCGAAGAAGATTGCTGTTGGTTCTCTTGAGAAG-
* ** * *
1598266 CT-GCGCTGATGAACCTTCATCTCTGGAATCCTCATCTTGCTGACGTTCAGAAGACGATTGCTGT
130 CTGGCGCTAATGAACCTTCATCTCTGGAATCCTCATCTTGCTGACACTCAGAAGAAGATTGATGT
* * *
1598330 TGGTTCTCTTGAGAAGCTGGTGCTGATGAACC
195 TCGTTCTCTTGAGAAGCTGGGGCCGATGAACC
1598362 T
1 T
1598363 TCATATTTGG
Statistics
Matches: 190, Mismatches: 36, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
226 188 0.99
227 2 0.01
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (226 bp):
TGTCTTGCTGACATTCAGAAGACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTAATGAACCT
TCATTTATGGAATCCTGGTCATGCTGACACTCCGAAGAAGATTGCTGTTGGTTCTCTTGAGAAGC
TGGCGCTAATGAACCTTCATCTCTGGAATCCTCATCTTGCTGACACTCAGAAGAAGATTGATGTT
CGTTCTCTTGAGAAGCTGGGGCCGATGAACC
Found at i:1598393 original size:307 final size:307
Alignment explanation
Indices: 1597829--1598447 Score: 771
Period size: 307 Copynumber: 2.0 Consensus size: 307
1597819 TTGGAATCAT
* ** * *
1597829 TGTCTTGCTGACGCTCTTAAGAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCT
1 TGTCTTGCTGACACTCAGAAGAAGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGATGAACCT
* ** * * * *
1597894 TCATCTTTGGAATCCATGTCTTGCTGACGTTCTGAGGACGATTGCTGTTGGTTCTCTTGAGAATC
66 TCATCTTTGGAATCCATGTCATGCTGACACTCCGAAGAAGATTGCTGTTGGTTCTCTTGAGAACC
* * * * ** * * *
1597959 TGGTGCTAATGAATCTTCATTTTTGGAATCCTGGTCATGTTGACACTCCGAATACGATTGCTGTT
131 TGGCGCTAATGAACCTTCATCTCTGGAATCCTCATCATGCTGACACTCAGAAGACGATTGCTGTT
* * * * * *
1598024 GGTTCTCTTGAGAAGCTGGTGCTAATGAATCTTCGTTTTTGGAATCCTGGTCTTGTTGACACTCT
196 GGTTCTCTTGAGAAGCTGGTGCTAATGAACCTTCATATTTGGAATCCTCGTCTTGATGACACTCC
*
1598089 GAAGAAGATTGATGTTCG-TTCTGTTGAGAAGCTGGG-GCCGATGAACC
261 GAAGAAGATTGATG-TCGATTATGTTGAGAA-CTGGGAGCCGATGAACC
* * *
1598136 TGTCTTGCTGACATTCAGAAGACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGGTGAACCT
1 TGTCTTGCTGACACTCAGAAGAAGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGATGAACCT
** * * *
1598201 TTGT-TTATGGAATCCTTGTCATGCTGACACTCCGAAGAAGGTTGTTGTTGGTTCTCTTGAGAAG
66 TCATCTT-TGGAATCCATGTCATGCTGACACTCCGAAGAAGATTGCTGTTGGTTCTCTTGAGAA-
* * **
1598265 CCT-GCGCTGATGAACCTTCATCTCTGGAATCCTCATCTTGCTGACGTTCAGAAGACGATTGCTG
129 CCTGGCGCTAATGAACCTTCATCTCTGGAATCCTCATCATGCTGACACTCAGAAGACGATTGCTG
*
1598329 TTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTCATATTTGGAATCCTCGTCTTGATGACACT
194 TTGGTTCTCTTGAGAAGCTGGTGCTAATGAACCTTCATATTTGGAATCCTCGTCTTGATGACACT
* * *
1598394 CCGAAGAAGATTGTTGTCGATTATGTTGAGAATTGGGAGCTGATGAACC
259 CCGAAGAAGATTGATGTCGATTATGTTGAGAACTGGGAGCCGATGAACC
1598443 T-TCTT
1 TGTCTT
1598448 TTTTGGAATC
Statistics
Matches: 264, Mismatches: 44, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
306 13 0.05
307 249 0.94
308 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (307 bp):
TGTCTTGCTGACACTCAGAAGAAGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGATGAACCT
TCATCTTTGGAATCCATGTCATGCTGACACTCCGAAGAAGATTGCTGTTGGTTCTCTTGAGAACC
TGGCGCTAATGAACCTTCATCTCTGGAATCCTCATCATGCTGACACTCAGAAGACGATTGCTGTT
GGTTCTCTTGAGAAGCTGGTGCTAATGAACCTTCATATTTGGAATCCTCGTCTTGATGACACTCC
GAAGAAGATTGATGTCGATTATGTTGAGAACTGGGAGCCGATGAACC
Found at i:1598504 original size:388 final size:388
Alignment explanation
Indices: 1597784--1598507 Score: 988
Period size: 388 Copynumber: 1.9 Consensus size: 388
1597774 TGTCGTTTGC
* * * * **
1597784 TCTCTTGAGAAGCTGGTGCTGATGAACCTTCGATTTTGGAATCATTGTCTTGCTGACGCTCTTAA
1 TCTCTTGAGAAACTGGCGCTGATGAACCTTCGATTTTGGAATCATTGTCATGCTGACACTCCGAA
* *
1597849 GAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATCTTTGGAATCCATGTC
66 GAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATCTCTGGAATCCATATC
* * * *
1597914 TTGCTGACGTTCTGAGGACGATTGCTGTTGGTTCTCTTGAGAATCTGGTGCTAATGAATCTTCAT
131 TTGCTGACGTTCAGAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTAATGAACCTTCAT
* * * * * * * * *
1597979 TTTTGGAATCCTGGTCATGTTGACACTCCGAATACGATTGCTGTTGGTTCTCTTGAGAAGCTGGT
196 ATTTGGAATCCTCGTCATGATGACACTCCGAAGAAGATTGCTGTCGATTATCTTGAGAAGCTGGA
* * * * ** *
1598044 GCTAATGAATCTTCGTTTTTGGAATCCTGGTCTTGTTGACACTCTGAAGAAGATTGATGTTCGTT
261 GCTAATGAACCTTCGTTTTTGGAATCCTGGTCTTGCTAACACCCCAAAGAAGATTGATGTACGTT
*
1598109 CTGTTGAGAAGCTGGGGCCGATGAACCTGTCTTGCTGACATTCAGAAGACGATTGATGTTGGT
326 ATGTTGAGAAGCTGGGGCCGATGAACCTGTCTTGCTGACATTCAGAAGACGATTGATGTTGGT
* * *
1598172 TCTCTTGAGAAACTGGCGCTGGTGAACCTTTG-TTTATGGAATCCTTGTCATGCTGACACTCCGA
1 TCTCTTGAGAAACTGGCGCTGATGAACCTTCGATTT-TGGAATCATTGTCATGCTGACACTCCGA
* *
1598236 AGAAGGTTGTTGTTGGTTCTCTTGAGAAGCCT-GCGCTGATGAACCTTCATCTCTGGAATCC-TC
65 AGAAGATTGCTGTTGGTTCTCTTGAGAAG-CTGGCGCTGATGAACCTTCATCTCTGGAATCCAT-
*
1598299 ATCTTGCTGACGTTCAGAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTT
128 ATCTTGCTGACGTTCAGAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTAATGAACCTT
* * * *
1598364 CATATTTGGAATCCTCGTCTTGATGACACTCCGAAGAAGATTGTTGTCGATTATGTTGAGAA-TT
193 CATATTTGGAATCCTCGTCATGATGACACTCCGAAGAAGATTGCTGTCGATTATCTTGAGAAGCT
* * * *
1598428 GGGAGCTGATGAACCTTCTTTTTTGGAATCCTTGTCTTGCTAACCCCCCAAAGAAGATTGATGTA
258 -GGAGCTAATGAACCTTCGTTTTTGGAATCCTGGTCTTGCTAACACCCCAAAGAAGATTGATGTA
*
1598493 GGTTATGTTGAGAAG
322 CGTTATGTTGAGAAG
1598508 TTGGCCCTGA
Statistics
Matches: 288, Mismatches: 44, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
387 5 0.02
388 281 0.98
389 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (388 bp):
TCTCTTGAGAAACTGGCGCTGATGAACCTTCGATTTTGGAATCATTGTCATGCTGACACTCCGAA
GAAGATTGCTGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATCTCTGGAATCCATATC
TTGCTGACGTTCAGAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTAATGAACCTTCAT
ATTTGGAATCCTCGTCATGATGACACTCCGAAGAAGATTGCTGTCGATTATCTTGAGAAGCTGGA
GCTAATGAACCTTCGTTTTTGGAATCCTGGTCTTGCTAACACCCCAAAGAAGATTGATGTACGTT
ATGTTGAGAAGCTGGGGCCGATGAACCTGTCTTGCTGACATTCAGAAGACGATTGATGTTGGT
Found at i:1598506 original size:162 final size:162
Alignment explanation
Indices: 1598151--1598517 Score: 396
Period size: 162 Copynumber: 2.3 Consensus size: 162
1598141 TGCTGACATT
* * **
1598151 CAGAAGACGATTGATGTTGGTTCTCTTGAGAAACTGGCGCTGGTGAACCTTTGTTTATGGAATCC
1 CAGAAGACGATTGATGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATTTATGGAATCC
* * * * * * * *
1598216 TTGTCATGCTGACACTCCGAAGAAGGTTGTTGTTGGTTCTCTTGAGAAGCCTGCGCTGATGAACC
66 TCGTCATGATGACACTCCGAAGAAGATTGTTGTCGATTATCTTGAGAAGCCGGAGCTGATGAACC
* ***
1598281 TTCATCTCTGGAATCCTCATCTTGCTGACGTT
131 TTCATCTCTGGAATCCTCATCTTGCTAACCCC
* *
1598313 CAGAAGACGATTGCTGTTGGTTCTCTTGAGAAGCTGGTGCTGATGAACCTTCATATT-TGGAATC
1 CAGAAGACGATTGATGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCAT-TTATGGAATC
* * ***
1598377 CTCGTCTTGATGACACTCCGAAGAAGATTGTTGTCGATTATGTTGAGAATTGGGAGCTGATGAAC
65 CTCGTCATGATGACACTCCGAAGAAGATTGTTGTCGATTATCTTGAGAAGCCGGAGCTGATGAAC
* * * **
1598442 CTTCTTTTTTGGAATCCTTGTCTTGCTAACCCCC
130 CTTCATCTCTGGAATCCTCATCTTGCTAA-CCCC
* * * * * *
1598476 CA-AAGAAGATTGATGTAGGTTATGTTGAGAAGTTGGCCCTGA
1 CAGAAGACGATTGATGTTGGTTCTCTTGAGAAGCTGGCGCTGA
1598518 ACCTTCTTTC
Statistics
Matches: 167, Mismatches: 36, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
162 162 0.97
163 5 0.03
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (162 bp):
CAGAAGACGATTGATGTTGGTTCTCTTGAGAAGCTGGCGCTGATGAACCTTCATTTATGGAATCC
TCGTCATGATGACACTCCGAAGAAGATTGTTGTCGATTATCTTGAGAAGCCGGAGCTGATGAACC
TTCATCTCTGGAATCCTCATCTTGCTAACCCC
Found at i:1605990 original size:11 final size:11
Alignment explanation
Indices: 1605974--1606015 Score: 77
Period size: 11 Copynumber: 3.9 Consensus size: 11
1605964 TATAAAATCT
1605974 GGTTGAACCAC
1 GGTTGAACCAC
1605985 GGTTGAACCAC
1 GGTTGAACCAC
1605996 GGTTGAACC-C
1 GGTTGAACCAC
1606006 GGTTGAACCA
1 GGTTGAACCA
1606016 GTGAACCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 10 0.33
11 20 0.67
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (11 bp):
GGTTGAACCAC
Found at i:1606010 original size:21 final size:22
Alignment explanation
Indices: 1605974--1606015 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
1605964 TATAAAATCT
1605974 GGTTGAACCACGGTTGAACCAC
1 GGTTGAACCACGGTTGAACCAC
1605996 GGTTGAACC-CGGTTGAACCA
1 GGTTGAACCACGGTTGAACCA
1606016 GTGAACCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (22 bp):
GGTTGAACCACGGTTGAACCAC
Found at i:1608538 original size:17 final size:18
Alignment explanation
Indices: 1608503--1608543 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1608493 CTATTATGTA
* *
1608503 TTTAATTTATTTAAGTAT
1 TTTACTTTAATTAAGTAT
1608521 TTTACTTTAATTAA-TAT
1 TTTACTTTAATTAAGTAT
1608538 TTTACT
1 TTTACT
1608544 AATATAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTACTTTAATTAAGTAT
Found at i:1608736 original size:111 final size:111
Alignment explanation
Indices: 1608613--1608937 Score: 614
Period size: 111 Copynumber: 2.9 Consensus size: 111
1608603 ATATATCTCT
1608613 ACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
1 ACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
1608678 TGATTTATTTAATGCATGATTATTAGATTAAGAATTAAATATATCG
66 TGATTTATTTAATGCATGATTATTAGATTAAGAATTAAATATATCG
*
1608724 ACACTTTGCTGATACGATAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
1 ACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
*
1608789 TGATTTATTTAATGCATGATTATTAGATTAAGAATTAAATATCTCG
66 TGATTTATTTAATGCATGATTATTAGATTAAGAATTAAATATATCG
* *
1608835 ACACTTTGCTAATACAGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
1 ACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
1608900 TGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
1608938 TTTTTGTAAT
Statistics
Matches: 209, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
111 209 1.00
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (111 bp):
ACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATAATTAGT
TGATTTATTTAATGCATGATTATTAGATTAAGAATTAAATATATCG
Found at i:1611207 original size:13 final size:13
Alignment explanation
Indices: 1611189--1611215 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1611179 GGTCACAACC
1611189 TGACCCGACCCGT
1 TGACCCGACCCGT
1611202 TGACCCGACCCGT
1 TGACCCGACCCGT
1611215 T
1 T
1611216 AATCGTTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.44, G:0.22, T:0.19
Consensus pattern (13 bp):
TGACCCGACCCGT
Found at i:1613709 original size:24 final size:23
Alignment explanation
Indices: 1613676--1613764 Score: 88
Period size: 24 Copynumber: 3.7 Consensus size: 23
1613666 TATCTAATTT
*
1613676 CTGACTTGAATTCTGTTCTGATA
1 CTGACCTGAATTCTGTTCTGATA
* *
1613699 CATGACCTGAATTCTGCTCTGATTT
1 C-TGACCTGAATTCTGTTCTGA-TA
* *
1613724 CTGATCTGGATTCTGTTCTGATA
1 CTGACCTGAATTCTGTTCTGATA
**
1613747 TCTGTTCTGAATTCTGTT
1 -CTGACCTGAATTCTGTT
1613765 TTAATTTATG
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
23 2 0.04
24 50 0.93
25 2 0.04
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.45
Consensus pattern (23 bp):
CTGACCTGAATTCTGTTCTGATA
Found at i:1613720 original size:12 final size:12
Alignment explanation
Indices: 1613705--1613764 Score: 68
Period size: 12 Copynumber: 5.0 Consensus size: 12
1613695 GATACATGAC
*
1613705 CTGAATTCTGCT
1 CTGAATTCTGTT
* *
1613717 CTGATTTCTGAT
1 CTGAATTCTGTT
*
1613729 CTGGATTCTGTT
1 CTGAATTCTGTT
1613741 CTG-ATATCTGTT
1 CTGAAT-TCTGTT
1613753 CTGAATTCTGTT
1 CTGAATTCTGTT
1613765 TTAATTTATG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
11 2 0.05
12 37 0.90
13 2 0.05
ACGTcount: A:0.15, C:0.18, G:0.18, T:0.48
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:1614906 original size:9 final size:9
Alignment explanation
Indices: 1614889--1614944 Score: 69
Period size: 9 Copynumber: 6.2 Consensus size: 9
1614879 ACCTGCTCAG
1614889 GACGACGAC
1 GACGACGAC
*
1614898 GAGGACGAC
1 GACGACGAC
1614907 GACGACGAC
1 GACGACGAC
*
1614916 GACGACGAT
1 GACGACGAC
1614925 GACGAC-AC
1 GACGACGAC
*
1614933 TGACGATGAC
1 -GACGACGAC
1614943 GA
1 GA
1614945 TGATGACGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
8 1 0.03
9 37 0.93
10 2 0.05
ACGTcount: A:0.34, C:0.27, G:0.34, T:0.05
Consensus pattern (9 bp):
GACGACGAC
Found at i:1614930 original size:15 final size:15
Alignment explanation
Indices: 1614889--1614954 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
1614879 ACCTGCTCAG
* *
1614889 GACGACGACGAGGAC
1 GACGATGACGACGAC
*
1614904 GACGACGACGACGAC
1 GACGATGACGACGAC
1614919 GACGATGACGAC-AC
1 GACGATGACGACGAC
* *
1614933 TGACGATGACGATGAT
1 -GACGATGACGACGAC
1614949 GACGAT
1 GACGAT
1614955 AGCGAGGAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
14 2 0.04
15 42 0.93
16 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.33, T:0.09
Consensus pattern (15 bp):
GACGATGACGACGAC
Found at i:1614947 original size:6 final size:6
Alignment explanation
Indices: 1614889--1614944 Score: 69
Period size: 6 Copynumber: 9.3 Consensus size: 6
1614879 ACCTGCTCAG
* *
1614889 GACGAC GACGAG GACGAC GACGAC GACGAC GACGAT GACGAC -ACTGAC
1 GACGAC GACGAC GACGAC GACGAC GACGAC GACGAC GACGAC GAC-GAC
*
1614937 GATGAC GA
1 GACGAC GA
1614945 TGATGACGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
5 2 0.05
6 40 0.93
7 1 0.02
ACGTcount: A:0.34, C:0.27, G:0.34, T:0.05
Consensus pattern (6 bp):
GACGAC
Found at i:1615124 original size:48 final size:45
Alignment explanation
Indices: 1615050--1615138 Score: 124
Period size: 48 Copynumber: 1.9 Consensus size: 45
1615040 ATCGATAGAT
* * *
1615050 TTTTTTTTATTTTATTTGTATTTACTTTATTTTGTTTAATTGTAA
1 TTTTTTTTATTTTATTTATACTTACTTTATTTTGTTAAATTGTAA
1615095 TTTTTTTTATTTCTCATTTAATACTTACTTTATTTTGTTAAATT
1 TTTTTTTTATTT-T-ATTT-ATACTTACTTTATTTTGTTAAATT
1615139 TGTTGGACTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
45 12 0.32
46 1 0.03
47 4 0.11
48 21 0.55
ACGTcount: A:0.21, C:0.06, G:0.04, T:0.69
Consensus pattern (45 bp):
TTTTTTTTATTTTATTTATACTTACTTTATTTTGTTAAATTGTAA
Found at i:1626992 original size:13 final size:13
Alignment explanation
Indices: 1626974--1627002 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1626964 TTATGTCATT
1626974 TTTTATTTTTTTA
1 TTTTATTTTTTTA
1626987 TTTTATTTTTTTA
1 TTTTATTTTTTTA
1627000 TTT
1 TTT
1627003 CAAAATGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTATTTTTTTA
Found at i:1627035 original size:10 final size:11
Alignment explanation
Indices: 1627020--1627172 Score: 55
Period size: 11 Copynumber: 13.5 Consensus size: 11
1627010 TAACCCTTTC
1627020 TTATTTT-TAT
1 TTATTTTATAT
1627030 TTATTTTATAT
1 TTATTTTATAT
* *
1627041 TCTATTTCGTTTTT
1 T-TATTT--TATAT
*
1627055 TTATTATATAT
1 TTATTTTATAT
* *
1627066 ATATATATATAT
1 TTAT-TTTATAT
* * *
1627078 ATATATTATTCT
1 TTATTTTA-TAT
1627090 CTTATTTT-TA-
1 -TTATTTTATAT
* *
1627100 TTATTTTTTTT
1 TTATTTTATAT
1627111 TTATTCTTTATAT
1 TTA-T-TTTATAT
* *
1627124 TTATTTTTTCAA
1 TTATTTTAT-AT
1627136 TT-TTTTAT-T
1 TTATTTTATAT
*
1627145 TTATTATTATTT
1 TTATT-TTATAT
*
1627157 TTATTTTATAA
1 TTATTTTATAT
1627168 TTATT
1 TTATT
1627173 GGTTTTGATT
Statistics
Matches: 107, Mismatches: 21, Indels: 29
0.68 0.13 0.18
Matches are distributed among these distances:
9 9 0.08
10 10 0.09
11 38 0.36
12 29 0.27
13 17 0.16
14 4 0.04
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.71
Consensus pattern (11 bp):
TTATTTTATAT
Found at i:1627064 original size:2 final size:2
Alignment explanation
Indices: 1627059--1627083 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1627049 GTTTTTTTAT
1627059 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1627084 TATTCTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1627100 original size:6 final size:6
Alignment explanation
Indices: 1627100--1627163 Score: 51
Period size: 6 Copynumber: 10.2 Consensus size: 6
1627090 CTTATTTTTA
* *
1627100 TTATTT TT-TTT TTATTCT TTATAT TTATTTT TTCAATTT TT-TATT TTATTA
1 TTATTT TTATTT TTATT-T TTATTT TTA-TTT TT--ATTT TTAT-TT TTATTT
1627151 TTATTT TTATTT T
1 TTATTT TTATTT T
1627164 ATAATTATTG
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
5 6 0.13
6 25 0.53
7 10 0.21
8 5 0.11
9 1 0.02
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:1627100 original size:14 final size:13
Alignment explanation
Indices: 1627083--1627163 Score: 51
Period size: 14 Copynumber: 6.1 Consensus size: 13
1627073 TATATATATA
1627083 TTATTCTCTTATTT
1 TTATTCT-TTATTT
* *
1627097 TTATTATTTTTTTT
1 TTATT-CTTTATTT
*
1627111 TTATTCTTTATAT
1 TTATTCTTTATTT
*
1627124 TTATTTTTTCAATTT
1 TTATTCTTT--ATTT
*
1627139 TT-TAT-TTTATTA
1 TTAT-TCTTTATTT
1627151 TTATT-TTTATTT
1 TTATTCTTTATTT
1627163 T
1 T
1627164 ATAATTATTG
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
12 13 0.25
13 14 0.26
14 19 0.36
15 7 0.13
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTCTTTATTT
Found at i:1627126 original size:27 final size:29
Alignment explanation
Indices: 1627083--1627165 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 29
1627073 TATATATATA
* *
1627083 TTATTCTCTTATTTTTATTATTTT-TTTT
1 TTATTCTATTATATTTATTATTTTATTTT
1627111 TTATTCT-TTATATTTATT-TTTTCAATTTT
1 TTATTCTATTATATTTATTATTTT--ATTTT
*
1627140 TTATTTTATTATTATTT-TTATTTTAT
1 TTATTCTATTA-TATTTATTATTTTAT
1627166 AATTATTGGT
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
26 4 0.09
27 10 0.21
28 7 0.15
29 12 0.26
30 5 0.11
31 9 0.19
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (29 bp):
TTATTCTATTATATTTATTATTTTATTTT
Found at i:1627128 original size:33 final size:34
Alignment explanation
Indices: 1627091--1627238 Score: 95
Period size: 33 Copynumber: 4.5 Consensus size: 34
1627081 TATTATTCTC
1627091 TTATTTTTATTATTTTTT-TTTTATTCTTTATAT
1 TTATTTTTATTATTTTTTATTTTATTCTTTATAT
* * *
1627124 TTATTTTT-TCAATTTTTTATTTTATT-ATTATTT
1 TTATTTTTAT-TATTTTTTATTTTATTCTTTATAT
*
1627157 TTATTTTATAATTATTGGTTTTGA-TTTATTATTT-TA-
1 TTATTTT-T-ATTATT--TTTT-ATTTTATTCTTTATAT
* *
1627193 TTA-TTCTATTATTTTGTT-TTTTA-TC-TAATAT
1 TTATTTTTATTATTTT-TTATTTTATTCTTTATAT
1627224 TTA--TTTATTATTTTT
1 TTATTTTTATTATTTTT
1627239 CTATCTAACA
Statistics
Matches: 92, Mismatches: 10, Indels: 30
0.70 0.08 0.23
Matches are distributed among these distances:
29 2 0.02
30 13 0.14
31 9 0.10
32 3 0.03
33 33 0.36
34 9 0.10
35 5 0.05
36 4 0.04
37 11 0.12
38 3 0.03
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.73
Consensus pattern (34 bp):
TTATTTTTATTATTTTTTATTTTATTCTTTATAT
Found at i:1627159 original size:17 final size:17
Alignment explanation
Indices: 1627097--1627172 Score: 75
Period size: 17 Copynumber: 4.5 Consensus size: 17
1627087 TCTCTTATTT
*
1627097 TTATTATTTTTTTTTTA
1 TTATTATTTTTATTTTA
* *
1627114 TTCTTTATATTTATTTT-
1 TT-ATTATTTTTATTTTA
*
1627131 TTCAAT-TTTTTATTTTA
1 TT-ATTATTTTTATTTTA
1627148 TTATTATTTTTATTTTA
1 TTATTATTTTTATTTTA
*
1627165 TAATTATT
1 TTATTATT
1627173 GGTTTTGATT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
16 11 0.23
17 26 0.54
18 11 0.23
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (17 bp):
TTATTATTTTTATTTTA
Found at i:1627206 original size:23 final size:23
Alignment explanation
Indices: 1627180--1627241 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 23
1627170 ATTGGTTTTG
* *
1627180 ATTTATTATTTTAT-TATTCTATT
1 ATTTATTATTTTATCTAATAT-TT
*
1627203 ATTT-TGTTTTTTATCTAATATTT
1 ATTTAT-TATTTTATCTAATATTT
1627226 ATTTATTATTTT-TCTA
1 ATTTATTATTTTATCTA
1627242 TCTAACATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
22 5 0.16
23 22 0.69
24 5 0.16
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (23 bp):
ATTTATTATTTTATCTAATATTT
Found at i:1632245 original size:84 final size:84
Alignment explanation
Indices: 1632051--1632799 Score: 759
Period size: 84 Copynumber: 9.0 Consensus size: 84
1632041 TTTAAAAAAC
* * * * * * * *
1632051 ATCATTTGCAGCATAGCTTAAGTCGAGAAGGGTTA--TCTG-CC-AAAGACCCTCGAGTTTGATT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
* * *
1632112 ACACTCAGCTTCAAGGGCAC
66 ACGCTCAGCTCCAA-GGCAT
* * *
1632132 ATCATTTACAGTATAGCTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
1632197 ACGCTCAGCTCCAAGGCAT
66 ACGCTCAGCTCCAAGGCAT
* ** * * *
1632216 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAAC-AAAGACCTTCGATTTTGACT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
*
1632280 ACGCTCAGCTCCAAGGCAA
66 ACGCTCAGCTCCAAGGCAT
** * * ** *
1632299 ATCATTTGCAAAATATCTCAAGGCAAGAAGGGTTATTTGCCATCAAAAGACCTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
*
1632364 ACGCTTAGCTCCAAGGCAT
66 ACGCTCAGCTCCAAGGCAT
* * * *
1632383 ATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAATACCTTCGAGTTTGACT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
*
1632448 ACGCTCAGCTCCAAGGCAC
66 ACGCTCAGCTCCAAGGCAT
* * * ** *
1632467 ATAATTTGCAACATAACTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
*
1632532 ACGCTCAACTCCAAGGCAT
66 ACGCTCAGCTCCAAGGCAT
* * * *** *
1632551 ATTATTTGCAGCATAACAT-AA-GTTGAGAAAGGTTATCTTCCAACC-AAAGACCTTTGAGTTCG
1 ATCATTTGCAGCATAAC-TCAAGGCT-AGAAGGGTTAT-TTGTGACCAAAAGACCTTCGAGTTCG
*
1632613 ACTACGCTCAACTCCAAGGCAT
63 ACTACGCTCAGCTCCAAGGCAT
* * * * * * * *
1632635 ATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTA--TCTG-CC-AAAGACCCTCGAGTTCGATT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
* * * *
1632696 ACACTCAGCTTCGATGGCAC
66 ACGCTCAGC-TCCAAGGCAT
* * * * *
1632716 ATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGTCTTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
*
1632781 ACGCTCAGCTCTAA-GCAT
66 ACGCTCAGCTCCAAGGCAT
1632799 A
1 A
1632800 ACTTAAGTCG
Statistics
Matches: 554, Mismatches: 99, Indels: 28
0.81 0.15 0.04
Matches are distributed among these distances:
80 26 0.05
81 67 0.12
83 86 0.16
84 316 0.57
85 59 0.11
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (84 bp):
ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATTTGTGACCAAAAGACCTTCGAGTTCGACT
ACGCTCAGCTCCAAGGCAT
Found at i:1632520 original size:168 final size:166
Alignment explanation
Indices: 1632051--1632791 Score: 852
Period size: 168 Copynumber: 4.5 Consensus size: 166
1632041 TTTAAAAAAC
* * * * * *
1632051 ATCATTTGCAGCATAGCTTAAGTCGAGAAGGGTTATC--TG-CCAAAGACCCTCGAGTTTGATTA
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAGACCTTCGAGTTTGACTA
* * * ** * **
1632113 CACTCAGCTTCAAGGGCACATCATTTACAGTATAGCTCAAGGCTAGAAGGGTTATTTGTGACCAA
66 CGCTCAGCTCCAA-GGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCA-CAA
1632178 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
129 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
** * *
1632216 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAGACCTTCGATTTTGACTA
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAGACCTTCGAGTTTGACTA
* * *
1632281 CGCTCAGCTCCAAGGCAAATCATTTGCAAAATATCTCAAGGCAAGAAGGGTTATTTGCCATCAAA
66 CGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCA-CAAA
*
1632346 AGACCTTCGAGTTCGACTACGCTTAGCTCCAAGGCAT
130 AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
* *
1632383 ATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAATACCTTCGAGTTTGACT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACC-AAAGACCTTCGAGTTTGACT
* *
1632448 ACGCTCAGCTCCAAGGCACATAATTTGCAACATAACTCAAGGCAAGAAGGGTTATTTGCCAACAA
65 ACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCC-ACAA
*
1632513 AAGACCTTCGAGTTCGACTACGCTCAACTCCAAGGCAT
129 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
* * * * * *
1632551 ATTATTTGCAGCATAACAT-AA-GTTGAGAAAGGTTATCT-TCCAACCAAAGACCTTTGAGTTCG
1 ATCATTTGCAGCATAAC-TCAAGGCT-AGAAGGGTTATCTGT--GACCAAAGACCTTCGAGTTTG
* * * * * * * *
1632613 ACTACGCTCAACTCCAAGGCATATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-C-C
62 ACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAC
* * * * * *
1632676 -AAAGACCCTCGAGTTCGATTACACTCAGCTTCGATGGCAC
127 AAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCAT
* * * * *
1632716 ATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGTCTTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACC-AAAGACCTTCGAGTTTGACT
1632781 ACGCTCAGCTC
65 ACGCTCAGCTC
1632792 TAAGCATAAC
Statistics
Matches: 493, Mismatches: 69, Indels: 28
0.84 0.12 0.05
Matches are distributed among these distances:
164 29 0.06
165 96 0.19
166 3 0.01
167 123 0.25
168 237 0.48
169 5 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (166 bp):
ATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAGACCTTCGAGTTTGACTA
CGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCACAAAA
GACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
Found at i:1632816 original size:69 final size:69
Alignment explanation
Indices: 1632727--1632860 Score: 171
Period size: 69 Copynumber: 1.9 Consensus size: 69
1632717 TCATTTACAA
* ** * **
1632727 CATAACTCAAGGCTAGAAGGGTTATCTG-TGACCAAAAGTCTTTCGAGTTCGACTACGCTCAGCT
1 CATAACTCAAGGCGAGAAGGGTTATCTGCCAACC-AAAGACACTCGAGTTCGACTACGCTCAGCT
1632791 CTAAG
65 CTAAG
* * *
1632796 CATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACACTCGAGTTCGACTACTCTCAGCTC
1 CATAACTCAAGGCGAGAAGGGTTATCTGCCAACCAAAGACACTCGAGTTCGACTACGCTCAGCTC
1632861 CAAGGCACAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
69 52 0.95
70 3 0.05
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (69 bp):
CATAACTCAAGGCGAGAAGGGTTATCTGCCAACCAAAGACACTCGAGTTCGACTACGCTCAGCTC
TAAG
Found at i:1634286 original size:29 final size:30
Alignment explanation
Indices: 1634254--1634334 Score: 76
Period size: 31 Copynumber: 2.6 Consensus size: 30
1634244 AATGTAACCC
*
1634254 TTTCTTATTTTTATTTGTTT-TATAT-TCTA
1 TTTCTTATTTTTATTT-TTTATATATATATA
*
1634283 TTTCGTTTTTTTTTATTTTTTATATATATATA
1 TTTC--TTATTTTTATTTTTTATATATATATA
*
1634315 TTTTTTATTCTCTTATTTTT
1 TTTCTTATT-T-TTATTTTT
1634335 ATTATTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
29 4 0.10
30 7 0.17
31 17 0.40
32 14 0.33
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.74
Consensus pattern (30 bp):
TTTCTTATTTTTATTTTTTATATATATATA
Found at i:1634303 original size:8 final size:8
Alignment explanation
Indices: 1634290--1634396 Score: 65
Period size: 8 Copynumber: 12.8 Consensus size: 8
1634280 CTATTTCGTT
1634290 TTTTTTTA
1 TTTTTTTA
1634298 -TTTTTTA
1 TTTTTTTA
* * *
1634305 TATATATA
1 TTTTTTTA
1634313 TATTTTTTA
1 T-TTTTTTA
* *
1634322 TTCTCTTA
1 TTTTTTTA
1634330 TTTTTATTA
1 TTTTT-TTA
1634339 TTTTTTTGA
1 TTTTTTT-A
1634348 TTTATTCTT-
1 TTT-TT-TTA
*
1634357 TTATATTTA
1 TT-TTTTTA
*
1634366 TTTTTTCAA
1 TTTTTT-TA
1634375 TTTTTTTA
1 TTTTTTTA
*
1634383 TTTTTTCA
1 TTTTTTTA
1634391 TTTTTT
1 TTTTTT
1634397 AATTATTGGT
Statistics
Matches: 75, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
7 7 0.09
8 34 0.45
9 29 0.39
10 3 0.04
11 2 0.03
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.76
Consensus pattern (8 bp):
TTTTTTTA
Found at i:1634352 original size:13 final size:13
Alignment explanation
Indices: 1634294--1634371 Score: 56
Period size: 14 Copynumber: 5.8 Consensus size: 13
1634284 TTCGTTTTTT
1634294 TTTATTTTTTATA
1 TTTATTTTTTATA
1634307 TATATATATTTTT-TA
1 T-T-TAT-TTTTTATA
*
1634322 TTCTCTTATTTT-TA
1 TT-TATT-TTTTATA
1634336 -TTATTTTTT-TGA
1 TTTATTTTTTAT-A
1634348 TTTATTCTTTTATA
1 TTTATT-TTTTATA
1634362 TTTATTTTTT
1 TTTATTTTTT
1634372 CAATTTTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
11 5 0.09
12 4 0.07
13 12 0.22
14 21 0.39
15 7 0.13
16 5 0.09
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.74
Consensus pattern (13 bp):
TTTATTTTTTATA
Found at i:1634384 original size:17 final size:16
Alignment explanation
Indices: 1634290--1634396 Score: 74
Period size: 17 Copynumber: 6.4 Consensus size: 16
1634280 CTATTTCGTT
1634290 TTTTTTTATTTTTT-A
1 TTTTTTTATTTTTTCA
* *
1634305 TATATATATATTTTTT-A
1 T-T-TTTTTATTTTTTCA
* * *
1634322 TTCTCTTATTTTTATTA
1 TTTTTTTATTTTT-TCA
* *
1634339 TTTTTTTGATTTATTCT
1 TTTTTTT-ATTTTTTCA
1634356 TTTATATTTATTTTTTCAA
1 TTT-T-TTTATTTTTTC-A
1634375 TTTTTTTATTTTTTCA
1 TTTTTTTATTTTTTCA
1634391 TTTTTT
1 TTTTTT
1634397 AATTATTGGT
Statistics
Matches: 71, Mismatches: 13, Indels: 15
0.72 0.13 0.15
Matches are distributed among these distances:
15 8 0.11
16 10 0.14
17 33 0.46
18 14 0.20
19 6 0.08
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.76
Consensus pattern (16 bp):
TTTTTTTATTTTTTCA
Found at i:1634425 original size:8 final size:8
Alignment explanation
Indices: 1634290--1634438 Score: 64
Period size: 8 Copynumber: 18.5 Consensus size: 8
1634280 CTATTTCGTT
*
1634290 TTTTTTTA
1 TTTTATTA
1634298 TTTT-TTA
1 TTTTATTA
*
1634305 TATATATATA
1 T-TTTAT-TA
1634315 TTTT-TTA
1 TTTTATTA
* *
1634322 TTCTCTTA
1 TTTTATTA
1634330 TTTTTATTA
1 -TTTTATTA
*
1634339 TTTTTTTGA
1 TTTTATT-A
*
1634348 -TTTATTC
1 TTTTATTA
1634355 TTTTA-TA
1 TTTTATTA
1634362 -TTTATT-
1 TTTTATTA
*
1634368 TTTTCAATTT
1 TTTT--ATTA
1634378 TTTTATT-
1 TTTTATTA
1634385 TTTTCATT-
1 TTTT-ATTA
1634393 TTTTAATTA
1 TTTT-ATTA
*
1634402 TTGGTT-TTG
1 TT--TTATTA
*
1634411 GTTTATTA
1 TTTTATTA
1634419 TTTTATTA
1 TTTTATTA
1634427 TTTTATTA
1 TTTTATTA
1634435 TTTT
1 TTTT
1634439 GTCTTTTTTA
Statistics
Matches: 110, Mismatches: 14, Indels: 34
0.70 0.09 0.22
Matches are distributed among these distances:
6 4 0.04
7 20 0.18
8 59 0.54
9 18 0.16
10 7 0.06
11 2 0.02
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (8 bp):
TTTTATTA
Found at i:1635682 original size:61 final size:59
Alignment explanation
Indices: 1635601--1635714 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 59
1635591 GTATATACAT
* ** *
1635601 ATAGTTTGGGATGAATTTGAAATATTCTAAAAGTTTGGGGACTAGTTTAGAATGAAGGCC
1 ATAGTTTGGGATGAAATTGAAATATTC-AAAAGTTTCAGGACTAATTTAGAATGAAGGCC
*
1635661 ATAGTTTGGGGATGAAATTGAAATGTTCAAAAGTTTCAGGACTAATTTAGAATG
1 ATAGTTT-GGGATGAAATTGAAATATTCAAAAGTTTCAGGACTAATTTAGAATG
1635715 CCCATAGTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
60 30 0.62
61 18 0.38
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.33
Consensus pattern (59 bp):
ATAGTTTGGGATGAAATTGAAATATTCAAAAGTTTCAGGACTAATTTAGAATGAAGGCC
Found at i:1635694 original size:60 final size:56
Alignment explanation
Indices: 1635601--1635757 Score: 163
Period size: 57 Copynumber: 2.7 Consensus size: 56
1635591 GTATATACAT
* * ** * *
1635601 ATAGTTTGGGATGAATTTGAAATATTCTAAAAGTTTGGGGACTAGTTTAGAATGAAGGCC
1 ATAGTTTGGGATGAAATTGAAATGTTC-AAAAGTTTCAGGACTAATTTAGAAT---GCCC
1635661 ATAGTTTGGGGATGAAATTGAAATGTTCAAAAGTTTCAGGACTAATTTAGAATGCCC
1 ATAGTTT-GGGATGAAATTGAAATGTTCAAAAGTTTCAGGACTAATTTAGAATGCCC
* * * *
1635718 ATAGTTTAAGGATGAAAATGCAATGTTTAAAAGTTT-AGGA
1 ATAGTTT-GGGATGAAATTGAAATGTTCAAAAGTTTCAGGA
1635758 ATTAATTGAA
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
56 4 0.05
57 34 0.40
60 29 0.34
61 18 0.21
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.32
Consensus pattern (56 bp):
ATAGTTTGGGATGAAATTGAAATGTTCAAAAGTTTCAGGACTAATTTAGAATGCCC
Found at i:1636384 original size:13 final size:13
Alignment explanation
Indices: 1636366--1636393 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1636356 TCCTATGATG
1636366 AGGTCGTATTCAC
1 AGGTCGTATTCAC
1636379 AGGTCGTATTCAC
1 AGGTCGTATTCAC
1636392 AG
1 AG
1636394 AACCGTCGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (13 bp):
AGGTCGTATTCAC
Found at i:1642746 original size:2 final size:2
Alignment explanation
Indices: 1642741--1642765 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1642731 TTTTTTTGTG
1642741 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1642766 GTCAAACCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1647041 original size:32 final size:32
Alignment explanation
Indices: 1647000--1647120 Score: 135
Period size: 32 Copynumber: 3.8 Consensus size: 32
1646990 GAGTCGAGGG
1647000 TTACCTATGTCTTTCGGGACATAT-GAGCAGGA
1 TTACCTATGTCTTTCGGGACATATGGA-CAGGA
*
1647032 TTACCTATGTCCTTT-GGGACATATGGACATGA
1 TTACCTATGT-CTTTCGGGACATATGGACAGGA
* *
1647064 TTTCCTATGTCTTTCGGGACATATGGATA-G-
1 TTACCTATGTCTTTCGGGACATATGGACAGGA
* *
1647094 TTACCTATAT-TCTTCGGAACATATGGA
1 TTACCTATGTCT-TTCGGGACATATGGA
1647121 TAGGTCCTTC
Statistics
Matches: 79, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
29 1 0.01
30 22 0.28
31 5 0.06
32 45 0.57
33 6 0.08
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (32 bp):
TTACCTATGTCTTTCGGGACATATGGACAGGA
Found at i:1648051 original size:22 final size:21
Alignment explanation
Indices: 1648001--1648052 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
1647991 GGGCGAAATT
* *
1648001 ACTGTAGCAGGGTATTGGTAC
1 ACTGTAGCAGGGTATCGATAC
1648022 ACTGTAGCAGGGTATCGATACC
1 ACTGTAGCAGGGTATCGATA-C
*
1648044 CCTGTAGCA
1 ACTGTAGCA
1648053 TTTTGGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (21 bp):
ACTGTAGCAGGGTATCGATAC
Found at i:1652760 original size:48 final size:48
Alignment explanation
Indices: 1652705--1652798 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
1652695 GATTTACTTG
* *
1652705 TCTGTCTTCCTTATTCTTGCTCTGATTTTCTTCTTGTAGAACAACAAC
1 TCTGTCTTCCTTATTCTTGCTCTAATTTTCTTATTGTAGAACAACAAC
1652753 TCTGTCTTCCTTATTCTTGCTCTAATTTTCTTATTGTAGAACAACA
1 TCTGTCTTCCTTATTCTTGCTCTAATTTTCTTATTGTAGAACAACA
1652799 GCTGCAACGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.20, C:0.23, G:0.10, T:0.47
Consensus pattern (48 bp):
TCTGTCTTCCTTATTCTTGCTCTAATTTTCTTATTGTAGAACAACAAC
Found at i:1670279 original size:11 final size:11
Alignment explanation
Indices: 1670265--1670292 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
1670255 ATTTCTTTGA
1670265 TGTTTCTTCTC
1 TGTTTCTTCTC
1670276 TGTTTCTTCTC
1 TGTTTCTTCTC
1670287 TGTTTC
1 TGTTTC
1670293 ATACTTGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.25, G:0.11, T:0.64
Consensus pattern (11 bp):
TGTTTCTTCTC
Found at i:1672754 original size:15 final size:15
Alignment explanation
Indices: 1672743--1672815 Score: 55
Period size: 15 Copynumber: 5.1 Consensus size: 15
1672733 TATTATAATG
1672743 AATTTTTATATAAAT
1 AATTTTTATATAAAT
*
1672758 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
* **
1672773 -A--TAT-TATCGAT
1 AATTTTTATATAAAT
1672784 GAATTTTTATATAAAT
1 -AATTTTTATATAAAT
* *
1672800 TATTTTTATTTAAAT
1 AATTTTTATATAAAT
1672815 A
1 A
1672816 TTTAAAATTT
Statistics
Matches: 42, Mismatches: 11, Indels: 10
0.67 0.17 0.16
Matches are distributed among these distances:
11 4 0.10
12 2 0.05
13 1 0.02
14 1 0.02
15 29 0.69
16 5 0.12
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:1672795 original size:42 final size:41
Alignment explanation
Indices: 1672729--1672816 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 41
1672719 ATAATAAAAT
1672729 AATATATTATAATGAATTTTTATATAAATAATTTTTATTTA
1 AATATATTATAATGAATTTTTATATAAATAATTTTTATTTA
* *
1672770 AATATATTATCGATGAATTTTTATATAAATTATTTTTATTTA
1 AATATATTAT-AATGAATTTTTATATAAATAATTTTTATTTA
1672812 AATAT
1 AATAT
1672817 TTAAAATTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 10 0.23
42 34 0.77
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (41 bp):
AATATATTATAATGAATTTTTATATAAATAATTTTTATTTA
Found at i:1673278 original size:2 final size:2
Alignment explanation
Indices: 1673273--1673299 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1673263 TAAATTCATA
1673273 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1673300 CAAATTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1674871 original size:38 final size:39
Alignment explanation
Indices: 1674812--1675215 Score: 160
Period size: 38 Copynumber: 11.1 Consensus size: 39
1674802 AAAAAATTTT
*
1674812 AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTT
1 AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTC
* *
1674851 AAGAG-AAACTGTC-TAGAGTGAGATGAAGA----T-TTTC
1 AAGAGAAAACTATCTTA-AGTGAGAT-AAAATTTTTGTTTC
* * *
1674885 AAGCGAAAACTAACTTAATTGAGATAAAATTTTTGTTTC
1 AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTC
* *
1674924 AAGCG-AAACTGTC-TAGAGTGAGA-AAAA-----GATTTC
1 AAGAGAAAACTATCTTA-AGTGAGATAAAATTTTTG-TTTC
* *
1674957 AAGACAAAACTATCTCAAGTGAG--AAAATTTTTGTTTC
1 AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTC
* * * * * *
1674994 GAGAG-AAATTGTCTCAAGTGAGACAAAA---AT-TTTC
1 AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTC
* * * *
1675028 AAGGGAAAA-TATCTCAAGTGAGATAAATTTTTTGTTTT
1 AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTC
* * * * ** *
1675066 TAGAG-AAATTGTGTCGAGTGAGACAAAGA----T-TTTC
1 AAGAGAAAACTATCTTAAGTGAGATAAA-ATTTTTGTTTC
* *
1675100 AAGAGAAAACTATCTCAAGTGAGATAGAATTTTTGTTTC
1 AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTC
* * * **
1675139 GAGAG-AAACTGTCTCAAGTGAGACGAAA--TTT-TTT-
1 AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTC
* * **
1675173 AAGGGAAAA-TATCTCAAGTGAGATGCAATTTTT-TATTC
1 AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGT-TTC
1675211 AAGAG
1 AAGAG
1675216 GATTGTCCCA
Statistics
Matches: 274, Mismatches: 53, Indels: 77
0.68 0.13 0.19
Matches are distributed among these distances:
32 1 0.00
33 11 0.04
34 73 0.27
35 42 0.15
36 24 0.09
37 21 0.08
38 77 0.28
39 25 0.09
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (39 bp):
AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTC
Found at i:1674873 original size:73 final size:73
Alignment explanation
Indices: 1674740--1675215 Score: 480
Period size: 73 Copynumber: 6.7 Consensus size: 73
1674730 AGATGAAATT
* ** * * *
1674740 TTTTCAAGAGAAAA-TATCTCAAGTGAAATAAAA-----AATTCGAGAGAAACTATCTCGAGTGA
1 TTTTCAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTAGAGTGA
*
1674799 GACAAAAAA
66 GAC-AAAGA
* *
1674808 TTTT-AAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTTAAGAGAAACTGTCTAGAGTGA
1 TTTTCAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTAGAGTGA
**
1674872 GATGAAGA
66 GACAAAGA
* * * * *
1674880 TTTTCAAGCGAAAACTAACTTAATTGAGATAAAATTTTTGTTTCAAGCGAAACTGTCTAGAGTGA
1 TTTTCAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTAGAGTGA
*
1674945 GAAAAAGA
66 GACAAAGA
* * *
1674953 -TTTCAAGACAAAACTATCTCAAGTGAG--AAAATTTTTGTTTCGAGAGAAATTGTCTCA-AGTG
1 TTTTCAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTCAAGAGAAACTGTCT-AGAGTG
*
1675014 AGACAAAAA
65 AGACAAAGA
* * ** * * *
1675023 TTTTCAAGGGAAAA-TATCTCAAGTGAGATAAATTTTTTGTTTTTAGAGAAATTGTGTCGAGTGA
1 TTTTCAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTAGAGTGA
1675087 GACAAAGA
66 GACAAAGA
* *
1675095 TTTTCAAGAGAAAACTATCTCAAGTGAGATAGAATTTTTGTTTCGAGAGAAACTGTCTCA-AGTG
1 TTTTCAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTCAAGAGAAACTGTCT-AGAGTG
*
1675159 AGACGAAA-T
65 AGAC-AAAGA
* * **
1675168 TTTTTAAGGGAAAA-TATCTCAAGTGAGATGCAATTTTT-TATTCAAGAG
1 TTTTCAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGT-TTCAAGAG
1675216 GATTGTCCCA
Statistics
Matches: 342, Mismatches: 50, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
67 9 0.03
68 21 0.06
70 49 0.14
71 13 0.04
72 107 0.31
73 140 0.41
74 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (73 bp):
TTTTCAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTCAAGAGAAACTGTCTAGAGTGA
GACAAAGA
Found at i:1675048 original size:34 final size:34
Alignment explanation
Indices: 1674739--1675195 Score: 174
Period size: 34 Copynumber: 12.9 Consensus size: 34
1674729 GAGATGAAAT
* *
1674739 TTTTTCAAGAGAAAATATCTCAAGTGAAATAAAA
1 TTTTTCAAGAGAAAATATCTCAAGTGAGACAAAA
** * * *
1674773 -AATTCGAGAGAAACTATCTCGAGTGAGACAAAAA
1 TTTTTCAAGAGAAAATATCTCAAGTGAGAC-AAAA
* * *
1674807 ATTTT-AAGAGAAAACTATCTTAAGTGAGATAAAA
1 TTTTTCAAGAGAAAA-TATCTCAAGTGAGACAAAA
* * * * *
1674841 TTTTTGTTTTAAGAGAAACTGTCT-AGAGTGAGATGAAGA
1 ---TT-TTTCAAGAGAAAATATCTCA-AGTGAGA-CAAAA
* * * * *
1674880 -TTTTCAAGCGAAAACTAACTTAATTGAGATAAAA
1 TTTTTCAAGAGAAAA-TATCTCAAGTGAGACAAAA
* * *
1674914 TTTTTGTTTCAAGCGAAACTGTCT-AGAGTGAGA-AAAA
1 ---TT-TTTCAAGAGAAAATATCTCA-AGTGAGACAAAA
** * *
1674951 GATTTCAAGACAAAACTATCTCAAGTGAGA-AAATTT
1 TTTTTCAAGAGAAAA-TATCTCAAGTGAGACAAA--A
* * *
1674987 TTGTTTCGAGAGAAATTGTCTCAAGTGAGACAAAA
1 TT-TTTCAAGAGAAAATATCTCAAGTGAGACAAAA
* * * *
1675022 ATTTTCAAGGGAAAATATCTCAAGTGAGATAAATTTT
1 TTTTTCAAGAGAAAATATCTCAAGTGAGACAAA---A
** * * * *
1675059 TTGTTTTTAGAGAAATTGTGTCGAGTGAGACAAAGA
1 TT-TTTCAAGAGAAAATATCTCAAGTGAGACAAA-A
* *
1675095 -TTTTCAAGAGAAAACTATCTCAAGTGAGATAGAATTT
1 TTTTTCAAGAGAAAA-TATCTCAAGTGAGACA-AA--A
* * * *
1675132 TTGTTTCGAGAGAAACTGTCTCAAGTGAGACGAAA
1 TT-TTTCAAGAGAAAATATCTCAAGTGAGACAAAA
* *
1675167 TTTTTTAAGGGAAAATATCTCAAGTGAGA
1 TTTTTCAAGAGAAAATATCTCAAGTGAGA
1675196 TGCAATTTTT
Statistics
Matches: 307, Mismatches: 83, Indels: 66
0.67 0.18 0.14
Matches are distributed among these distances:
33 32 0.10
34 100 0.33
35 41 0.13
36 16 0.05
37 23 0.07
38 61 0.20
39 34 0.11
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.30
Consensus pattern (34 bp):
TTTTTCAAGAGAAAATATCTCAAGTGAGACAAAA
Found at i:1675240 original size:215 final size:215
Alignment explanation
Indices: 1674798--1675237 Score: 539
Period size: 215 Copynumber: 2.0 Consensus size: 215
1674788 ATCTCGAGTG
*
1674798 AGACAAAAAATTTTAAGAGAAAACTATCTTAAGTGAGATAAAATTTTTGTTTTAAGAGAAACTGT
1 AGAC-AAAAATTTTAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTTAAGAGAAACTGT
** * * * *
1674863 CTAGAGTGAGATGAAGATTTTCAAGCGAAAACTAACTTAATTGAGATAAAATTTTTGTTTCAAGC
65 CTAGAGTGAGACAAAGATTTTCAAGAGAAAACTAACTCAAGTGAGATAAAATTTTTGTTTCAAGA
1674928 GAAACTGTCTAGAGTGAGAAAAAGATTTCAAGACAAAACTATCTCAAGTGAGAAAATTTTTGTTT
130 GAAACTGTCTAGAGTGAGAAAAAGATTTCAAGACAAAACTATCTCAAGTGAGAAAATTTTTGTTT
* * *
1674993 CGAGAGAAATTGTCTCAAGTG
195 CAAGAGAAATTGTCCCAAGTA
* * * *
1675014 AGACAAAAATTTTCAAGGGAAAA-TATCTCAAGTGAGATAAATTTTTTGTTTTTAGAGAAATTGT
1 AGACAAAAATTTT-AAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTTAAGAGAAACTGT
* * * * *
1675078 GTCGAGTGAGACAAAGATTTTCAAGAGAAAACTATCTCAAGTGAGATAGAATTTTTGTTTCGAGA
65 CTAGAGTGAGACAAAGATTTTCAAGAGAAAACTAACTCAAGTGAGATAAAATTTTTGTTTCAAGA
* ** * ** *
1675143 GAAACTGTCTCA-AGTGAGACGAAATTTTTTAAGGGAAAA-TATCTCAAGTGAGATGCAATTTTT
130 GAAACTGTCT-AGAGTGAGA-AAAAGATTTCAAGACAAAACTATCTCAAGTGAGA--AAATTTTT
*
1675206 -TATTCAAGAG-GATTGTCCCAAGTA
191 GT-TTCAAGAGAAATTGTCCCAAGTA
1675230 AGACAAAA
1 AGACAAAA
1675238 TTTATTTCAA
Statistics
Matches: 191, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
215 131 0.69
216 46 0.24
217 14 0.07
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (215 bp):
AGACAAAAATTTTAAGAGAAAACTATCTCAAGTGAGATAAAATTTTTGTTTTAAGAGAAACTGTC
TAGAGTGAGACAAAGATTTTCAAGAGAAAACTAACTCAAGTGAGATAAAATTTTTGTTTCAAGAG
AAACTGTCTAGAGTGAGAAAAAGATTTCAAGACAAAACTATCTCAAGTGAGAAAATTTTTGTTTC
AAGAGAAATTGTCCCAAGTA
Found at i:1680016 original size:91 final size:90
Alignment explanation
Indices: 1679912--1680085 Score: 242
Period size: 91 Copynumber: 1.9 Consensus size: 90
1679902 TAAACTTGTT
* * * * * *
1679912 TAAAAATAATTATTTTACAATTATTTTTAAATGATAAATGAATAAGAAACATTTTGATAAAGAAC
1 TAAAAACAATTATTTTACAATTATTTTAAAATGATAAATGAATAACAAACATTGTAAGAAAGAA-
1679977 AAAATA-ATATATAATTTTAGTTTTTA
65 AAAATATA-ATATAATTTTAGTTTTTA
* *
1680003 TAAAAACATTTATTTTATAATTATTTTAAAATGATAAATGAATAACAAACATTGTAAGAAAGAAA
1 TAAAAACAATTATTTTACAATTATTTTAAAATGATAAATGAATAACAAACATTGTAAGAAAGAAA
*
1680068 AAATATAATTTAATTTTA
66 AAATATAATATAATTTTA
1680086 AAATTTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
90 16 0.22
91 57 0.78
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.39
Consensus pattern (90 bp):
TAAAAACAATTATTTTACAATTATTTTAAAATGATAAATGAATAACAAACATTGTAAGAAAGAAA
AAATATAATATAATTTTAGTTTTTA
Found at i:1680099 original size:74 final size:75
Alignment explanation
Indices: 1680014--1680156 Score: 252
Period size: 74 Copynumber: 1.9 Consensus size: 75
1680004 AAAAACATTT
* *
1680014 ATTTTATAATTATTTTAAAATGATAAATGAATAACAAACATTGTAAGAAAG-AAAAAATATAATT
1 ATTTTACAATTATTTTAAAATGATAAATGAATAACAAACAGTGTAAGAAAGAAAAAAATATAATT
1680078 TAATTTTAAA
66 TAATTTTAAA
1680088 ATTTTACAATTATTTTAAAATGATAAATGAATAACAAACAGTGTAAGAAAGAAAAAAAATATAAT
1 ATTTTACAATTATTTTAAAATGATAAATGAATAACAAACAGTGTAAGAAAG-AAAAAAATATAAT
1680153 TTAA
65 TTAA
1680157 ACTTACTTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
74 49 0.75
76 16 0.25
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (75 bp):
ATTTTACAATTATTTTAAAATGATAAATGAATAACAAACAGTGTAAGAAAGAAAAAAATATAATT
TAATTTTAAA
Found at i:1689593 original size:29 final size:30
Alignment explanation
Indices: 1689549--1689618 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 30
1689539 TTTGTTTCGG
*
1689549 TTAATCGAACCAAAATTAATTTGAAAATTA
1 TTAACCGAACCAAAATTAATTTGAAAATTA
1689579 TTAACCGAACC-AAATTAATTTGAAAATTA
1 TTAACCGAACCAAAATTAATTTGAAAATTA
1689608 TTAACCGAACC
1 TTAACCGAACC
1689619 GAATGAACCG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
29 29 0.74
30 10 0.26
ACGTcount: A:0.47, C:0.16, G:0.07, T:0.30
Consensus pattern (30 bp):
TTAACCGAACCAAAATTAATTTGAAAATTA
Found at i:1689696 original size:137 final size:136
Alignment explanation
Indices: 1689453--1689811 Score: 473
Period size: 137 Copynumber: 2.6 Consensus size: 136
1689443 TCGATTAATT
* * *
1689453 GAACCAAATTTTATTTGAAAATTATTAACCGAACTGAATTAACCAAAATTTTTTT-A--ATT--T
1 GAACCAAA-TTAATTTGAAAATTATTAACCGAACCGAATTAACC--GATTTTTTTAATTATTAAT
* * *
1689513 --ATTAATTGAAGAAAAAATTCGGTTAATTTGTTTCGGTTAATCGAACCAAAATTAATTTGAAAA
63 CAATTAATCGAAGCAAAAATTTGGTTAATTTGTTTCGGTTAATCGAACCAAAATTAATTTGAAAA
1689576 TTATTAACC
128 TTATTAACC
*
1689585 GAACCAAATTAATTTGAAAATTATTAACCGAACCGAATGAACCGATTTTTTTAATTATTAATCAA
1 GAACCAAATTAATTTGAAAATTATTAACCGAACCGAATTAACCGATTTTTTTAATTATTAATC-A
* * *
1689650 ATTAATCGAAGCAAAAATTTGGTTAATTATGTTT-GGTTAATTGAACCAAACTTTATTTGAAAAT
65 ATTAATCGAAGCAAAAATTTGGTTAATT-TGTTTCGGTTAATCGAACCAAAATTAATTTGAAAAT
1689714 TATTAACC
129 TATTAACC
* * * *
1689722 GAACCGAATTAATTTAAAAAGTATTAACTGAACCGAATTAACCGATTTTTTTTAATTATTAATCG
1 GAACCAAATTAATTTGAAAATTATTAACCGAACCGAATTAACCGA-TTTTTTTAATTATTAATC-
1689787 AATTAATCGAAGCAAAAATTTGGTT
64 AATTAATCGAAGCAAAAATTTGGTT
1689812 CGGTTAATTG
Statistics
Matches: 201, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
129 8 0.04
130 1 0.00
131 32 0.16
132 11 0.05
134 1 0.00
137 100 0.50
138 48 0.24
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (136 bp):
GAACCAAATTAATTTGAAAATTATTAACCGAACCGAATTAACCGATTTTTTTAATTATTAATCAA
TTAATCGAAGCAAAAATTTGGTTAATTTGTTTCGGTTAATCGAACCAAAATTAATTTGAAAATTA
TTAACC
Found at i:1689741 original size:29 final size:29
Alignment explanation
Indices: 1689704--1689762 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
1689694 ACCAAACTTT
* *
1689704 ATTTGAAAATTATTAACCGAACCGAATTA
1 ATTTAAAAAGTATTAACCGAACCGAATTA
*
1689733 ATTTAAAAAGTATTAACTGAACCGAATTA
1 ATTTAAAAAGTATTAACCGAACCGAATTA
1689762 A
1 A
1689763 CCGATTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (29 bp):
ATTTAAAAAGTATTAACCGAACCGAATTA
Found at i:1694198 original size:28 final size:28
Alignment explanation
Indices: 1694111--1694203 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 28
1694101 ACTAAATCCG
* **
1694111 CAATTATAAATATAGAAATT-AGA-ATT
1 CAATTATAAATATATAAATTAAGACCCT
* *
1694137 CGATTATAAACATATAAATTATAGACCCT
1 CAATTATAAATATATAAATTA-AGACCCT
1694166 -AATTATAAATATATAAATTAAGACCCT
1 CAATTATAAATATATAAATTAAGACCCT
*
1694193 CTATTAATAAA
1 CAATT-ATAAA
1694204 AAGAATTGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
26 17 0.31
27 7 0.13
28 24 0.44
29 6 0.11
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.33
Consensus pattern (28 bp):
CAATTATAAATATATAAATTAAGACCCT
Found at i:1699447 original size:23 final size:23
Alignment explanation
Indices: 1699421--1699470 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
1699411 CTTGGGAAAT
1699421 GATTTCCATGTATTTCATTGAAG
1 GATTTCCATGTATTTCATTGAAG
1699444 GATTTCCATGTATTTCATTGAAG
1 GATTTCCATGTATTTCATTGAAG
1699467 GATT
1 GATT
1699471 ACCCCTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (23 bp):
GATTTCCATGTATTTCATTGAAG
Found at i:1703594 original size:32 final size:31
Alignment explanation
Indices: 1703558--1703633 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
1703548 CGGGGCCGTG
*
1703558 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ACATCTCAGGGCCGCA
** **
1703590 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAAACATCTCAGGGCCGCA
*
1703621 GAGCCTACCTAAG
1 GGGCCTACCTAAG
1703634 TGTCACATTA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 23 0.64
32 13 0.36
ACGTcount: A:0.26, C:0.32, G:0.28, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAAACATCTCAGGGCCGCA
Found at i:1703617 original size:63 final size:63
Alignment explanation
Indices: 1703511--1703633 Score: 151
Period size: 63 Copynumber: 2.0 Consensus size: 63
1703501 ACCTAAGGGA
* * ** *
1703511 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
1703574 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAG
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAG
1703634 TGTCACATTA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
62 2 0.04
63 49 0.96
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:1706468 original size:17 final size:16
Alignment explanation
Indices: 1706446--1706492 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
1706436 TTTTGGTCAA
1706446 CAACGGTCAACGTGGGT
1 CAACGGTCAACG-GGGT
1706463 CAACGGTCAAC-GGGT
1 CAACGGTCAACGGGGT
1706478 CAACGGGTCAACGGG
1 CAAC-GGTCAACGGG
1706493 TCGGGTCGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 13 0.46
ACGTcount: A:0.26, C:0.26, G:0.36, T:0.13
Consensus pattern (16 bp):
CAACGGTCAACGGGGT
Found at i:1706480 original size:8 final size:8
Alignment explanation
Indices: 1706446--1706494 Score: 66
Period size: 8 Copynumber: 6.1 Consensus size: 8
1706436 TTTTGGTCAA
1706446 CAAC-GGT
1 CAACGGGT
1706453 CAACGTGGGT
1 CAAC--GGGT
1706463 CAAC-GGT
1 CAACGGGT
1706470 CAACGGGT
1 CAACGGGT
1706478 CAACGGGT
1 CAACGGGT
1706486 CAACGGGT
1 CAACGGGT
1706494 C
1 C
1706495 GGGTCGGGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
7 11 0.29
8 20 0.53
10 7 0.18
ACGTcount: A:0.24, C:0.27, G:0.35, T:0.14
Consensus pattern (8 bp):
CAACGGGT
Found at i:1706499 original size:13 final size:13
Alignment explanation
Indices: 1706467--1706548 Score: 80
Period size: 13 Copynumber: 6.3 Consensus size: 13
1706457 GTGGGTCAAC
1706467 GGTCAACGGGTCAACG
1 GGTCAACGGGT---CG
1706483 GGTCAACGGGTCG
1 GGTCAACGGGTCG
1706496 GGT---CGGGTCG
1 GGTCAACGGGTCG
* *
1706506 GGTCAACTGGTCA
1 GGTCAACGGGTCG
*
1706519 GGTAAACGGGTCG
1 GGTCAACGGGTCG
*
1706532 GGTAAACGGGTCG
1 GGTCAACGGGTCG
1706545 GGTC
1 GGTC
1706549 GGGTCGGGTT
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
10 10 0.18
13 36 0.63
16 11 0.19
ACGTcount: A:0.18, C:0.21, G:0.44, T:0.17
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:1713268 original size:21 final size:21
Alignment explanation
Indices: 1713227--1713268 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
1713217 TAATTATAGT
* *
1713227 CTCTTTTCATTTTGACCATTA
1 CTCTTTTAATTTTGACAATTA
1713248 CTCTTTTAATTTT-ATCAATTA
1 CTCTTTTAATTTTGA-CAATTA
1713269 GACCACTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.24, C:0.19, G:0.02, T:0.55
Consensus pattern (21 bp):
CTCTTTTAATTTTGACAATTA
Found at i:1724382 original size:17 final size:17
Alignment explanation
Indices: 1724360--1724392 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1724350 AACATTTCAG
1724360 TAAAAC-ATTTCACATAA
1 TAAAACAATTTC-CATAA
1724377 TAAAACAATTTCCATA
1 TAAAACAATTTCCATA
1724393 TCCATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAACAATTTCCATAA
Found at i:1724978 original size:13 final size:13
Alignment explanation
Indices: 1724960--1725002 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
1724950 TTGACTTTTT
1724960 CGGTCAAAGTTAA
1 CGGTCAAAGTTAA
*
1724973 CGGTCAACGATTAGA
1 CGGTCAAAG-TTA-A
1724988 CCGGTCAAAGTTAA
1 -CGGTCAAAGTTAA
1725002 C
1 C
1725003 AGTCTGACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 9 0.36
14 4 0.16
15 4 0.16
16 8 0.32
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (13 bp):
CGGTCAAAGTTAA
Found at i:1725054 original size:19 final size:19
Alignment explanation
Indices: 1725030--1725072 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
1725020 ATCAACTCTA
1725030 CCAAAGTCAACAGGTCGTG
1 CCAAAGTCAACAGGTCGTG
1725049 CCAAAGTCAACAGGTCGTG
1 CCAAAGTCAACAGGTCGTG
*
1725068 TCAAA
1 CCAAA
1725073 ACGGTTTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.16
Consensus pattern (19 bp):
CCAAAGTCAACAGGTCGTG
Found at i:1729094 original size:35 final size:35
Alignment explanation
Indices: 1729052--1729196 Score: 184
Period size: 35 Copynumber: 4.1 Consensus size: 35
1729042 CATCGACACT
* * *
1729052 TTCAAGTGAATGGAATGAAGCATCAGCACTTTTGA
1 TTCAAGTGAACGGAAGGAAGCATCAGCACTTTCGA
1729087 TTCAAGTGAACGG-AGGAAGCATCAGCACTTTCGA
1 TTCAAGTGAACGGAAGGAAGCATCAGCACTTTCGA
* * **
1729121 TTCAAGAAGAACGAAAGGAAGCATTGGCACTTTCGA
1 TTCAAG-TGAACGGAAGGAAGCATCAGCACTTTCGA
* * *
1729157 TTCAAGTGAATGGGAGGAAGCATAAGCACTTTCGA
1 TTCAAGTGAACGGAAGGAAGCATCAGCACTTTCGA
1729192 TTCAA
1 TTCAA
1729197 TTGTTCATAT
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
34 25 0.26
35 45 0.47
36 25 0.26
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (35 bp):
TTCAAGTGAACGGAAGGAAGCATCAGCACTTTCGA
Found at i:1731764 original size:3 final size:3
Alignment explanation
Indices: 1731758--1731827 Score: 112
Period size: 3 Copynumber: 24.7 Consensus size: 3
1731748 TTTTTATCCA
1731758 TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT T-T TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1731804 TA- TAT T-T TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
1731828 AATACATATT
Statistics
Matches: 63, Mismatches: 0, Indels: 8
0.89 0.00 0.11
Matches are distributed among these distances:
2 8 0.13
3 55 0.87
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1731780 original size:14 final size:14
Alignment explanation
Indices: 1731761--1731827 Score: 93
Period size: 14 Copynumber: 4.8 Consensus size: 14
1731751 TTATCCATAT
1731761 TATTATTATTATTA
1 TATTATTATTATTA
1731775 TATTATTATTATTA
1 TATTATTATTATTA
*
1731789 TTTTATTATTATTA
1 TATTATTATTATTA
1731803 T-TATATT-TTATTA
1 TAT-TATTATTATTA
1731816 TTATTATTATTA
1 -TATTATTATTA
1731828 AATACATATT
Statistics
Matches: 48, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
13 7 0.15
14 37 0.77
15 4 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTATTATTATTA
Found at i:1731854 original size:12 final size:11
Alignment explanation
Indices: 1731823--1731858 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
1731813 TTATTATTAT
*
1731823 TATTAAATACA
1 TATTAAATAAA
1731834 TATTAAATAAA
1 TATTAAATAAA
1731845 TATATAAATAAA
1 TAT-TAAATAAA
1731857 TA
1 TA
1731859 ATTACAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (11 bp):
TATTAAATAAA
Found at i:1732350 original size:5 final size:5
Alignment explanation
Indices: 1732332--1732398 Score: 80
Period size: 5 Copynumber: 12.6 Consensus size: 5
1732322 AGAGAGATAC
1732332 AAAGA AACAGA AAAGA AAAGA AAAGA AACAGGA AAAGA AAAGA AAAGA
1 AAAGA AA-AGA AAAGA AAAGA AAAGA AA-A-GA AAAGA AAAGA AAAGA
* *
1732380 AAAAA GAAAGA AGAGA AAA
1 AAAGA -AAAGA AAAGA AAA
1732399 CTTACTGTCA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
5 39 0.72
6 11 0.20
7 4 0.07
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:1732357 original size:21 final size:21
Alignment explanation
Indices: 1732332--1732398 Score: 91
Period size: 21 Copynumber: 3.1 Consensus size: 21
1732322 AGAGAGATAC
1732332 AAAGAAACAGAAAAGAAAAGA
1 AAAGAAACAGAAAAGAAAAGA
1732353 AAAGAAACAGGAAAAGAAAAGA
1 AAAGAAACA-GAAAAGAAAAGA
* *
1732375 AAAGAAA-AAAGAAAGAAGAGA
1 AAAGAAACAGA-AAAGAAAAGA
1732396 AAA
1 AAA
1732399 CTTACTGTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.02
21 22 0.52
22 19 0.45
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (21 bp):
AAAGAAACAGAAAAGAAAAGA
Found at i:1740574 original size:20 final size:19
Alignment explanation
Indices: 1740549--1740599 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
1740539 TAATGTGATA
*
1740549 GGGTATCGATATATATTTAG
1 GGGTATCGATAT-TATTCAG
1740569 GGGTATCGATATTATTCAG
1 GGGTATCGATATTATTCAG
*
1740588 GGAGTATAGATA
1 GG-GTATCGATA
1740600 CTCGAAAGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 8 0.29
20 20 0.71
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.35
Consensus pattern (19 bp):
GGGTATCGATATTATTCAG
Found at i:1753064 original size:11 final size:11
Alignment explanation
Indices: 1753048--1753081 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
1753038 TAACACCCCA
1753048 ACCCGTATCCG
1 ACCCGTATCCG
1753059 ACCCGTATCCG
1 ACCCGTATCCG
*
1753070 ACCCGGATCCG
1 ACCCGTATCCG
1753081 A
1 A
1753082 GTCCGAGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.21, C:0.44, G:0.21, T:0.15
Consensus pattern (11 bp):
ACCCGTATCCG
Found at i:1753598 original size:2 final size:2
Alignment explanation
Indices: 1753591--1753629 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1753581 GCAATATAAA
1753591 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1753630 TATATATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:1754193 original size:23 final size:21
Alignment explanation
Indices: 1754167--1754219 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
1754157 ATATCACATG
* *
1754167 TTCATATAAGCTCATAGCTTCTT
1 TTCATATAA-ATCATAGC-ACTT
* *
1754190 TTCATGTAAATCATATCACTT
1 TTCATATAAATCATAGCACTT
1754211 TTCATATAA
1 TTCATATAA
1754220 TTCACATGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 11 0.44
22 6 0.24
23 8 0.32
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (21 bp):
TTCATATAAATCATAGCACTT
Found at i:1754849 original size:20 final size:22
Alignment explanation
Indices: 1754824--1754881 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
1754814 TTCCCCTTGA
1754824 AGTGCATCGATGCATTC-T-AC
1 AGTGCATCGATGCATTCTTAAC
1754844 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC-TTAAC
1754867 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
1754882 CTACCCATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 17 0.50
22 1 0.03
23 3 0.09
24 13 0.38
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (22 bp):
AGTGCATCGATGCATTCTTAAC
Found at i:1758247 original size:23 final size:21
Alignment explanation
Indices: 1758221--1758273 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
1758211 ATATCACATG
*
1758221 TTCATATAAGCTCATAGCTTCTT
1 TTCATATAA-CTCATAGC-ACTT
* * *
1758244 TTCATGTAATTCATATCACTT
1 TTCATATAACTCATAGCACTT
1758265 TTCATATAA
1 TTCATATAA
1758274 TTCGCATGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 11 0.44
22 6 0.24
23 8 0.32
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (21 bp):
TTCATATAACTCATAGCACTT
Found at i:1758883 original size:20 final size:22
Alignment explanation
Indices: 1758858--1758915 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
1758848 TTCACCTTGA
1758858 AGTGCATCGATGCATTC-T-AC
1 AGTGCATCGATGCATTCTTAAC
1758878 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC-TTAAC
1758901 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
1758916 CTACCCATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 17 0.50
22 1 0.03
23 3 0.09
24 13 0.38
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (22 bp):
AGTGCATCGATGCATTCTTAAC
Found at i:1764908 original size:16 final size:17
Alignment explanation
Indices: 1764878--1764911 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1764868 ATATTTATTT
*
1764878 TAATATTTAATAATATA
1 TAATATTTAAAAATATA
1764895 TAAT-TTTAAAAATATA
1 TAATATTTAAAAATATA
1764911 T
1 T
1764912 TTTATATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATTTAAAAATATA
Found at i:1778724 original size:31 final size:30
Alignment explanation
Indices: 1778685--1778760 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 30
1778675 TCACACTATT
* *
1778685 AATATAATATAATATAACATATCATATTAA
1 AATATAATATAATATAACACATCATATAAA
*
1778715 AATATTAATATAATATATCACATCATATAAA
1 AATA-TAATATAATATAACACATCATATAAA
*
1778746 AATAATAATAAAATA
1 AAT-ATAATATAATA
1778761 ATCTGTCATT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
30 4 0.10
31 35 0.88
32 1 0.03
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (30 bp):
AATATAATATAATATAACACATCATATAAA
Found at i:1779682 original size:2 final size:2
Alignment explanation
Indices: 1779675--1779724 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
1779665 CATGTAGAAG
1779675 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1779717 TA TA TA TA
1 TA TA TA TA
1779725 AATCTTTCTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1786252 original size:2 final size:2
Alignment explanation
Indices: 1786245--1786286 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
1786235 CAATCCAAAC
1786245 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1786287 GATGTTACAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1792122 original size:2 final size:2
Alignment explanation
Indices: 1792115--1792140 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1792105 GACGATGGGG
1792115 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
1792141 AAGGACGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1795279 original size:26 final size:28
Alignment explanation
Indices: 1795242--1795304 Score: 76
Period size: 26 Copynumber: 2.3 Consensus size: 28
1795232 GTTGGGTGAA
* * *
1795242 AAAAAAACTAAATATATT-AAAT-TAAT
1 AAAAAAATTAAAAAAATTAAAATATAAT
1795268 AAAAAAATTAAAAAAATTAAAATATAAT
1 AAAAAAATTAAAAAAATTAAAATATAAT
1795296 AAATAAAAT
1 AAA-AAAAT
1795305 AAGAGAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.48
27 4 0.13
28 7 0.23
29 5 0.16
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (28 bp):
AAAAAAATTAAAAAAATTAAAATATAAT
Found at i:1796044 original size:23 final size:24
Alignment explanation
Indices: 1795993--1796046 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
1795983 ACCTCAAAAT
* *
1795993 AATATTATGTTATATATTTATTAT
1 AATATTATGTTATATATTTAATAA
* *
1796017 TATATTATTTTA-ATATTTAATAA
1 AATATTATGTTATATATTTAATAA
1796040 AATATTA
1 AATATTA
1796047 ATTATTAGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
AATATTATGTTATATATTTAATAA
Found at i:1796066 original size:38 final size:36
Alignment explanation
Indices: 1796006--1796078 Score: 103
Period size: 35 Copynumber: 2.0 Consensus size: 36
1795996 ATTATGTTAT
*
1796006 ATATTTATTATTATATTATTTTAAT-ATTTAATAAA
1 ATATTAATTATTATATTATTTTAATAATTTAATAAA
1796041 ATATTAATTATTAGTATATATTTTTAATAATTTAATAA
1 ATATTAATTATTA-TAT-TA-TTTTAATAATTTAATAA
1796079 TATCTATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 12 0.36
36 3 0.09
37 2 0.06
38 7 0.21
39 9 0.27
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (36 bp):
ATATTAATTATTATATTATTTTAATAATTTAATAAA
Found at i:1796184 original size:26 final size:26
Alignment explanation
Indices: 1796135--1796184 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
1796125 CTTATTTTGA
* *
1796135 TAATTAATAATTTAATTCTCTAATTT
1 TAATAAATAATTTAATTCTATAATTT
1796161 TAATAAATAATTATAATT-TATAAT
1 TAATAAATAATT-TAATTCTATAAT
1796185 ATTTTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (26 bp):
TAATAAATAATTTAATTCTATAATTT
Found at i:1796200 original size:17 final size:17
Alignment explanation
Indices: 1796157--1796215 Score: 52
Period size: 16 Copynumber: 3.5 Consensus size: 17
1796147 TAATTCTCTA
1796157 ATTTTAATAAATAATTAT
1 ATTTTAAT-AATAATTAT
* * *
1796175 AATTT-ATAATATTTTT
1 ATTTTAATAATAATTAT
1796191 ATTTTAATAA-AA-TAT
1 ATTTTAATAATAATTAT
1796206 ATTCTTAATA
1 ATT-TTAATA
1796216 TTTTATTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
15 5 0.15
16 18 0.55
17 6 0.18
18 4 0.12
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTTAATAATAATTAT
Found at i:1805589 original size:613 final size:614
Alignment explanation
Indices: 1804208--1806663 Score: 4794
Period size: 614 Copynumber: 4.0 Consensus size: 614
1804198 GTTTTCGATT
1804208 ACTAGTGCTTTGTGGTTTTCTGTTGCTGTTTTTGGGTTTCCTTTTTGACCGATGTTTCATATACC
1 ACTAGTGCTTTGTGGTTTTCTGTTGCTGTTTTTGGGTTTCCTTTTTGACCGATGTTTCATATACC
*
1804273 TAAAAATGGAATGAGTCTCTCTCTCCAAAATGTTCTAAATCTTCGAAACTCTAGGGTGACGGTTA
66 TAAAAATGGAATGAGTGTCTCTCTCCAAAATGTTCTAAATCTTCGAAACTCTAGGGTGACGGTTA
1804338 AAATGGCATACATGTCATCACCAATTTTGGTTTATTTTAATCATTTAGTAGTATTTTTTAGGCGA
131 AAATGGCATACATGTCATCACCAATTTTGGTTTATTTTAATCATTTAGTAGTATTTTTTAGGCGA
*
1804403 TTCTATCCCAAAAAAAAACACTTAAAATATCAAATACCAAATTATCATTGTTTTATCAATATTCA
196 TTCTATCCCAAAAAAAATCACTTAAAATATCAAATACCAAATTATCATTGTTTTATCAATATTCA
1804468 TCAATATGGCACCCCATTCTTAGGCATTTTTACCAAAATATTATCCTCAGGCCCTTTAATTACTT
261 TCAATATGGCACCCCATTCTTAGGCATTTTTACCAAAATATTATCCTCAGGCCCTTTAATTACTT
1804533 GTCAGACTCTTTCTCCTAAAATATTATCGATCTAATCCTTTATGATAAAGCGCGGATCACTATAT
326 GTCAGACTCTTTCTCCTAAAATATTATCGATCTAATCCTTTATGATAAAGCGCGGATCACTATAT
1804598 GTGTCTTTGTTCGAATTTGCACCATATAAGGAAGGTAAGGATCATTATTCATGTCTTAGTTGAAC
391 GTGTCTTTGTTCGAATTTGCACCATATAAGGAAGGTAAGGATCATTATTCATGTCTTAGTTGAAC
1804663 TTCTGATATATACGAAAGACTTGGATCATAAAATGTGCCTTCTATAGGGTTATATCATCTTTCAA
456 TTCTGATATATACGAAAGACTTGGATCATAAAATGTGCCTTCTATAGGGTTATATCATCTTTCAA
1804728 AATATTTAAAAAAATGTAATTTTAAAAAATTAAAAAATAAATTTATAGGGACTAACATCGTAATT
521 AATATTTAAAAAAATGTAATTTTAAAAAATTAAAAAATAAATTTATAGGGACTAACATCGTAATT
*
1804793 TAATACACATTAGTTTCACGAGTTAAAAA
586 TAATACACATTAGTTCCACGAGTTAAAAA
1804822 ACTAGTGCTTTGTGGTTTTCTGTTGCTGTTTTTGGGTTTCCTTTTTGACCGATGTTTCATATACC
1 ACTAGTGCTTTGTGGTTTTCTGTTGCTGTTTTTGGGTTTCCTTTTTGACCGATGTTTCATATACC
1804887 TAAAAATGGAATGAGTGTCTCTCTCCAAAATGTTCTAAATCTTCGAAACTCTAGGGTGACGGTTA
66 TAAAAATGGAATGAGTGTCTCTCTCCAAAATGTTCTAAATCTTCGAAACTCTAGGGTGACGGTTA
1804952 AAATGGCATACATGTCATCACCAATTTTGGTTTATTTTAATCATTTAGTAGTATTTTTTAGGCGA
131 AAATGGCATACATGTCATCACCAATTTTGGTTTATTTTAATCATTTAGTAGTATTTTTTAGGCGA
1805017 TTCTATCCCAAAAAAAATCACTTAAAATATCAAATACCAAATTATCATTGTTTTATCAATATTCA
196 TTCTATCCCAAAAAAAATCACTTAAAATATCAAATACCAAATTATCATTGTTTTATCAATATTCA
1805082 TCAATATGGCACCCCATTCTTAGGCATTTTTACCAAAATATTATCCTCAGGCCCTTTAATTACTT
261 TCAATATGGCACCCCATTCTTAGGCATTTTTACCAAAATATTATCCTCAGGCCCTTTAATTACTT
1805147 GTCAGACTCTTTCTCCTAAAATATTATCGATCTAATCCTTTATGATAAAGCGCGGATCACTATAT
326 GTCAGACTCTTTCTCCTAAAATATTATCGATCTAATCCTTTATGATAAAGCGCGGATCACTATAT
1805212 GTGTCTTTGTTCGAATTTGCACCATATAAGGAAGGTAAGGATCATTATTCATGTCTTAGTTGAAC
391 GTGTCTTTGTTCGAATTTGCACCATATAAGGAAGGTAAGGATCATTATTCATGTCTTAGTTGAAC
1805277 TTCTGATATATACGAAAGACTTGGATCATAAAATGTGCCTTCTATAGGGTTATATCATCTTTCAA
456 TTCTGATATATACGAAAGACTTGGATCATAAAATGTGCCTTCTATAGGGTTATATCATCTTTCAA
1805342 AATATTTAAAAAAAATGTAATTTT-AAAAATT-AAAAATAAATTTATAGGGACTAACATCGTAAT
521 AATATTT-AAAAAAATGTAATTTTAAAAAATTAAAAAATAAATTTATAGGGACTAACATCGTAAT
1805405 TTAATACACATTAGTTCCACGAGTTAAAAA
585 TTAATACACATTAGTTCCACGAGTTAAAAA
1805435 ACTAGTGCTTTGTGGTTTTCTGTTGCTGTTTTTGGGTTTCCTTTTTGACCGATGTTTCATATACC
1 ACTAGTGCTTTGTGGTTTTCTGTTGCTGTTTTTGGGTTTCCTTTTTGACCGATGTTTCATATACC
1805500 TAAAAATGGAATGAGTGTCTCTCTCCAAAATGTTCTAAATCTTCGAAACTCTAGGGTGACGGTTA
66 TAAAAATGGAATGAGTGTCTCTCTCCAAAATGTTCTAAATCTTCGAAACTCTAGGGTGACGGTTA
1805565 AAATGGCATACATGTCATCACCAATTTTGGTTTATTTTAATCATTTAGTAGTATTTTTTAGGCGA
131 AAATGGCATACATGTCATCACCAATTTTGGTTTATTTTAATCATTTAGTAGTATTTTTTAGGCGA
1805630 TTCTATCCCAAAAAAAAATCACTTAAAATATCAAATACCAAATTATCATTGTTTTATCAATATTC
196 TTCTATCCC-AAAAAAAATCACTTAAAATATCAAATACCAAATTATCATTGTTTTATCAATATTC
1805695 ATCAATATGGCACCCCATTCTTAGGCATTTTTACCAAAATATTATCCTCAGGCCCTTTAATTACT
260 ATCAATATGGCACCCCATTCTTAGGCATTTTTACCAAAATATTATCCTCAGGCCCTTTAATTACT
1805760 TGTCAGACTCTTTCTCCTAAAATATTATCGATCTAATCCTTTATGATAAAGCGCGGATCACTATA
325 TGTCAGACTCTTTCTCCTAAAATATTATCGATCTAATCCTTTATGATAAAGCGCGGATCACTATA
*
1805825 TGTGTCTTTGTTCGAATTTGCACCATATAAGAAAGGTAAGGATCATTATTCATGTCTTAGTTGAA
390 TGTGTCTTTGTTCGAATTTGCACCATATAAGGAAGGTAAGGATCATTATTCATGTCTTAGTTGAA
1805890 CTTCTGATATATACGAAAGACTTGGATCATAAAATGTGCCTTCTATAGGGTTATATCATCTTTCA
455 CTTCTGATATATACGAAAGACTTGGATCATAAAATGTGCCTTCTATAGGGTTATATCATCTTTCA
1805955 AAATATTTAAAAAAAATGTAATTTTAAAAAATTAAAAAATAAATTTATAGGGACTAACATCGTAA
520 AAATATTT-AAAAAAATGTAATTTTAAAAAATTAAAAAATAAATTTATAGGGACTAACATCGTAA
1806020 TTTAATACACATTAGTTCCACGAGTT-AAAA
584 TTTAATACACATTAGTTCCACGAGTTAAAAA
1806050 ACTAGTGCTTTGTGGTTTTCTGTTGCTGTTTTTGGGTTTCC-TTTTGACCGATGTTTCATATACC
1 ACTAGTGCTTTGTGGTTTTCTGTTGCTGTTTTTGGGTTTCCTTTTTGACCGATGTTTCATATACC
*
1806114 TAAAAATGGAATGAGTGTCTCTCTCTAAAATGTTCTAAATCTTCGAAACTCTAGGGTGACGGTTA
66 TAAAAATGGAATGAGTGTCTCTCTCCAAAATGTTCTAAATCTTCGAAACTCTAGGGTGACGGTTA
1806179 AAATGGCATACATGTCATCACCAATTTTGGTTTATTTTAATCATTTAGTAGTATTTTTTAGGCGA
131 AAATGGCATACATGTCATCACCAATTTTGGTTTATTTTAATCATTTAGTAGTATTTTTTAGGCGA
1806244 TTCTATCCCAAAAAAAATCACTTAAAATATCAAATACCAAATTATCATTGTTTTATCAATATTCA
196 TTCTATCCCAAAAAAAATCACTTAAAATATCAAATACCAAATTATCATTGTTTTATCAATATTCA
1806309 TCAATATGGCACCCCATTCTTAGGCATTTTTACCAAAATATTATCCTCAGGCCCTTTAATTACTT
261 TCAATATGGCACCCCATTCTTAGGCATTTTTACCAAAATATTATCCTCAGGCCCTTTAATTACTT
1806374 GTCAGACTCTTTCTCCTAAAATATTATCGATCTAATCCTTTATGATAAAGCGCGGATCACTATAT
326 GTCAGACTCTTTCTCCTAAAATATTATCGATCTAATCCTTTATGATAAAGCGCGGATCACTATAT
1806439 GTGTCTTTGTTCGAATTTGCACCATATAAGGAAGGTAAGGATCATTATTCATGTCTTAGTTGAAC
391 GTGTCTTTGTTCGAATTTGCACCATATAAGGAAGGTAAGGATCATTATTCATGTCTTAGTTGAAC
1806504 TTCTGATATATACGAAAGACTTGGATCATAAAATGTGCCTTCTATAGGGTTATATCATCTTTCAA
456 TTCTGATATATACGAAAGACTTGGATCATAAAATGTGCCTTCTATAGGGTTATATCATCTTTCAA
* *
1806569 AATATTTAAAAAAATGTAATTTTAAAAAATTAAAAAATAAATTTATAGGGACTATCATCATAATT
521 AATATTTAAAAAAATGTAATTTTAAAAAATTAAAAAATAAATTTATAGGGACTAACATCGTAATT
1806634 TAATACACATTAGTTCCACGAGTTAAAAA
586 TAATACACATTAGTTCCACGAGTTAAAAA
1806663 A
1 A
1806664 TTTAATGGGA
Statistics
Matches: 1829, Mismatches: 8, Indels: 11
0.99 0.00 0.01
Matches are distributed among these distances:
612 80 0.04
613 592 0.32
614 1032 0.56
615 68 0.04
616 57 0.03
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (614 bp):
ACTAGTGCTTTGTGGTTTTCTGTTGCTGTTTTTGGGTTTCCTTTTTGACCGATGTTTCATATACC
TAAAAATGGAATGAGTGTCTCTCTCCAAAATGTTCTAAATCTTCGAAACTCTAGGGTGACGGTTA
AAATGGCATACATGTCATCACCAATTTTGGTTTATTTTAATCATTTAGTAGTATTTTTTAGGCGA
TTCTATCCCAAAAAAAATCACTTAAAATATCAAATACCAAATTATCATTGTTTTATCAATATTCA
TCAATATGGCACCCCATTCTTAGGCATTTTTACCAAAATATTATCCTCAGGCCCTTTAATTACTT
GTCAGACTCTTTCTCCTAAAATATTATCGATCTAATCCTTTATGATAAAGCGCGGATCACTATAT
GTGTCTTTGTTCGAATTTGCACCATATAAGGAAGGTAAGGATCATTATTCATGTCTTAGTTGAAC
TTCTGATATATACGAAAGACTTGGATCATAAAATGTGCCTTCTATAGGGTTATATCATCTTTCAA
AATATTTAAAAAAATGTAATTTTAAAAAATTAAAAAATAAATTTATAGGGACTAACATCGTAATT
TAATACACATTAGTTCCACGAGTTAAAAA
Found at i:1807410 original size:20 final size:20
Alignment explanation
Indices: 1807381--1807422 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
1807371 GAAGAGTTAA
*
1807381 CAATATTGTATAAATAGATT
1 CAATAGTGTATAAATAGATT
*
1807401 CAATAGTGTATAAGTAGATT
1 CAATAGTGTATAAATAGATT
1807421 CA
1 CA
1807423 TTAGATTCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (20 bp):
CAATAGTGTATAAATAGATT
Found at i:1808352 original size:44 final size:44
Alignment explanation
Indices: 1808303--1808567 Score: 431
Period size: 44 Copynumber: 6.0 Consensus size: 44
1808293 TGTTACCGAA
*
1808303 ATAAATGAAAATGCGTAACGGTGCATTATTGGCAGAAATGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
* * * *
1808347 ATAAATGAAAATGCATAACGATGCATTATTGACAGAAAGGTGTC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
*
1808391 ATAAATGAAAATGAATAACGGTGCATTATTGGCAGAAATGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
*
1808435 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTTCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
* *
1808479 ATAAATGAAAATGCATAACAGTGTATTATTGGCAGAAATGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
* *
1808523 ATAAATGAAAATGCATAACGGTGCATTATTGGCATAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
1808567 A
1 A
1808568 CTCATGATAT
Statistics
Matches: 202, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 202 1.00
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (44 bp):
ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
Done.