genome.fa.s7939.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007939.1 Hibiscus syriacus cultivar Beakdansim tig00110355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59423

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6658--6688	12	2.6	12	94	0	53	54	0	45	0	0.99
11092--11140	25	2.0	25	91	0	80	53	2	2	42	1.24
11109--11155	20	2.3	20	89	7	69	55	2	0	42	1.12
11125--11159	15	2.4	14	90	4	52	57	0	0	42	0.99
18394--18494	27	3.9	27	83	10	138	37	17	11	32	1.87
18388--18497	51	2.2	51	91	4	179	35	17	10	36	1.85
18512--18558	22	2.2	21	88	11	69	38	4	6	51	1.47
20919--20951	13	2.5	13	100	0	66	45	0	0	54	0.99
21515--21552	14	2.8	14	84	4	51	39	5	5	50	1.48
21529--21569	18	2.2	19	87	12	59	36	2	7	53	1.42
21602--21690	24	3.9	22	76	17	74	35	4	4	55	1.41
27603--27698	31	3.1	30	71	12	79	27	19	20	32	1.97
27681--27873	30	6.4	30	98	0	368	23	20	23	32	1.98
31205--31247	21	2.0	21	81	0	50	27	30	25	16	1.97
32183--32261	31	2.6	30	80	6	86	29	18	21	30	1.97
32244--32436	30	6.4	30	98	0	368	23	20	23	32	1.98
34781--34841	31	2.0	31	90	0	95	45	21	11	21	1.82
34901--34959	29	2.0	29	90	0	91	30	25	16	27	1.97
35063--35121	27	2.2	27	96	0	109	22	25	25	27	2.00
35213--35244	16	2.0	16	93	0	55	46	25	15	12	1.81
37067--37121	28	2.0	28	85	7	76	23	9	25	41	1.83
37342--37404	11	5.9	11	73	14	60	39	1	1	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43962--44151	42	4.5	41	82	5	193	17	16	24	40	1.90
43907--44150	43	5.7	42	81	6	240	20	16	24	38	1.92
43907--44139	85	2.7	85	83	2	270	21	16	24	37	1.93
47568--47707	36	3.9	36	92	3	230	37	20	22	19	1.94
47568--47707	71	2.0	72	94	4	248	37	20	22	19	1.94
52702--52765	2	32.5	2	96	3	121	50	0	0	50	1.00
52942--53025	31	2.7	31	81	0	114	35	23	15	25	1.94
54292--54346	17	3.3	17	78	14	69	38	0	1	60	1.08
55638--55690	22	2.5	23	79	14	69	33	11	15	39	1.83

Tables:   1

The End!