Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007940.1 Hibiscus syriacus cultivar Beakdansim tig00110356_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1348078
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 5
Found at i:888500 original size:18 final size:21
Alignment explanation
Indices: 888468--888533 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 21
888458 TGTTAAAAGT
*
888468 ATTTTAAAATAATAAATA-T-A
1 ATTTT-AATTAATAAATACTAA
*
888488 ATTTT-ATTAATAAGTACTAA
1 ATTTTAATTAATAAATACTAA
* *
888508 ATTTTAATTAATTTAACACTAA
1 ATTTTAATTAA-TAAATACTAA
888530 ATTT
1 ATTT
888534 AGTAAATATT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
18 9 0.24
19 1 0.03
20 11 0.30
21 5 0.14
22 11 0.30
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTTTAATTAATAAATACTAA
Found at i:889997 original size:13 final size:14
Alignment explanation
Indices: 889956--889997 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
889946 TCTTAAAATA
889956 TAATATAATATTATT
1 TAATA-AATATTATT
* *
889971 TAATAAAAAATATT
1 TAATAAATATTATT
889985 T-ATAAATATTATT
1 TAATAAATATTATT
889998 ACAGGAAAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 10 0.43
14 8 0.35
15 5 0.22
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATAAATATTATT
Found at i:916203 original size:15 final size:15
Alignment explanation
Indices: 916183--916222 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
916173 GCTAGAAATT
916183 AAATTCATGCTTGAA
1 AAATTCATGCTTGAA
916198 AAATTCATGCTTGAA
1 AAATTCATGCTTGAA
916213 AAATTCATGC
1 AAATTCATGC
916223 CTAAAGCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (15 bp):
AAATTCATGCTTGAA
Found at i:918117 original size:26 final size:25
Alignment explanation
Indices: 918070--918127 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 25
918060 TCCTTCAGTA
*
918070 TTTTTATTATTGATTTTTCCTTTTAT
1 TTTTTATTATTGATTTTGCC-TTTAT
*
918096 TTTTTATT-TTTATTTTAGCCTTTAT
1 TTTTTATTATTGATTTT-GCCTTTAT
918121 TTATTTA
1 TT-TTTA
918128 ATTTAGTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.72
Consensus pattern (25 bp):
TTTTTATTATTGATTTTGCCTTTAT
Found at i:922638 original size:168 final size:170
Alignment explanation
Indices: 922339--922678 Score: 623
Period size: 168 Copynumber: 2.0 Consensus size: 170
922329 CTCATCACCC
922339 GCCTATTACCGCAACGAGTACCACTTTTTAAATCCACACCCACCCACTACCCACCATCCCCGCCC
1 GCCTATTACCGCAACGAGTACCACTTTTTAAATCCACACCCACCCACTACCCACCATCCCCGCCC
*
922404 CAATTAAAACAGGTACAATACGAAATTGTATCCGTTTGTCATTCCTCCTTCTTACCGTTGCGCTT
66 CAATTAAAACAGGTACAATACGAAATTGTACCCGTTTGTCATTCCTCCTTCTTACCGTTGCGCTT
922469 TAGTCGATGCTCCAAATTTACTCTAAGAATTTTGCGCGCA
131 TAGTCGATGCTCCAAATTTACTCTAAGAATTTTGCGCGCA
*
922509 GCCTATTACCGCAACGAGTACCACTTTTTAAATCCACACCCACCCTCTACCCACCAT-CCC-CCC
1 GCCTATTACCGCAACGAGTACCACTTTTTAAATCCACACCCACCCACTACCCACCATCCCCGCCC
922572 CAATTAAAACAGGTACAATAC-AAAGTTGTACCCGTTTGTCATTCCTCCTTCTTACCGTTGCGCT
66 CAATTAAAACAGGTACAATACGAAA-TTGTACCCGTTTGTCATTCCTCCTTCTTACCGTTGCGCT
*
922636 TTAGTCGATGCTCCAAATTTACTCTGAGAATTTTGCGCGCA
130 TTAGTCGATGCTCCAAATTTACTCTAAGAATTTTGCGCGCA
922677 GC
1 GC
922679 GAATACCGCG
Statistics
Matches: 166, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
167 3 0.02
168 104 0.63
169 3 0.02
170 56 0.34
ACGTcount: A:0.26, C:0.33, G:0.13, T:0.28
Consensus pattern (170 bp):
GCCTATTACCGCAACGAGTACCACTTTTTAAATCCACACCCACCCACTACCCACCATCCCCGCCC
CAATTAAAACAGGTACAATACGAAATTGTACCCGTTTGTCATTCCTCCTTCTTACCGTTGCGCTT
TAGTCGATGCTCCAAATTTACTCTAAGAATTTTGCGCGCA
Found at i:929757 original size:115 final size:109
Alignment explanation
Indices: 929560--929784 Score: 288
Period size: 115 Copynumber: 2.0 Consensus size: 109
929550 TTCATAATTC
* * *
929560 TGACTGCCGGAGGTCTTCCACAGAAGTTGAACATGATGTTGGGAGTAACCTACTACCTTACCTCC
1 TGACTGCCGGAGGTCTTCCACAGAAGTTCAACATGATGTTGGGAGCAACCTACAACCTTACCTCC
* *
929625 CCTCATCCCATTACATATGGAATAGGGTCAGTTATTTTTTTAAGG
66 CCTCATCCCATTACATAT-GAAAAGGGTCAGCTATTTTTTTAAGG
* * * * *
929670 TGACTGCCGGAGGTCTTCCACGGAAGCTGTTCTCAACCTGATGTTGGGGGCAGCCTACAATCTTA
1 TGACTGCCGGAGGTCTTCCACAGAA---G-T-TCAACATGATGTTGGGAGCAACCTACAACCTTA
* *
929735 CCTCTCCTCATCCTATTACATATGAAAAGGGTCAGCTATTTTTTTAAGG
61 CCTCCCCTCATCCCATTACATATGAAAAGGGTCAGCTATTTTTTTAAGG
929784 T
1 T
929785 AGGGTTGTTT
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
110 24 0.24
113 1 0.01
114 26 0.27
115 47 0.48
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (109 bp):
TGACTGCCGGAGGTCTTCCACAGAAGTTCAACATGATGTTGGGAGCAACCTACAACCTTACCTCC
CCTCATCCCATTACATATGAAAAGGGTCAGCTATTTTTTTAAGG
Found at i:931068 original size:23 final size:24
Alignment explanation
Indices: 931002--931062 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
930992 TGGTATGTTG
* *
931002 TTATT-TTTTATATTAATAAATTTA
1 TTATTATTTTAT-TAAATAATTTTA
931026 TTATTATTTTATTAAATAATTTTA
1 TTATTATTTTATTAAATAATTTTA
931050 -TATTATTTTATTA
1 TTATTATTTTATTA
931063 TTTAATTGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 13 0.38
24 15 0.44
25 6 0.18
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (24 bp):
TTATTATTTTATTAAATAATTTTA
Found at i:934871 original size:19 final size:19
Alignment explanation
Indices: 934847--934892 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
934837 AGTGAGAATG
934847 ATTACTTAAATGATATCAA
1 ATTACTTAAATGATATCAA
934866 ATTACTTAAATGATATCAA
1 ATTACTTAAATGATATCAA
934885 ATTACTTA
1 ATTACTTA
934893 TTATTTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (19 bp):
ATTACTTAAATGATATCAA
Found at i:937224 original size:3 final size:3
Alignment explanation
Indices: 937216--937259 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
937206 GCTATTTGGT
937216 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
937260 GAATTGTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:938127 original size:11 final size:12
Alignment explanation
Indices: 938087--938130 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
938077 TATTTAAACG
*
938087 GGTATTGGGCCA
1 GGTATTGGGTCA
*
938099 GGTATTGGGTCG
1 GGTATTGGGTCA
938111 GGTATTGGGTC-
1 GGTATTGGGTCA
938122 GGTATTGGG
1 GGTATTGGG
938131 CTGGGAATCG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 9 0.30
12 21 0.70
ACGTcount: A:0.11, C:0.09, G:0.48, T:0.32
Consensus pattern (12 bp):
GGTATTGGGTCA
Found at i:938129 original size:23 final size:24
Alignment explanation
Indices: 938085--938130 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
938075 ATTATTTAAA
938085 CGGGTATTGGGCCAGGTATTGGGT
1 CGGGTATTGGGCCAGGTATTGGGT
*
938109 CGGGTATTGGGTC-GGTATTGGG
1 CGGGTATTGGGCCAGGTATTGGG
938131 CTGGGAATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.11, C:0.11, G:0.48, T:0.30
Consensus pattern (24 bp):
CGGGTATTGGGCCAGGTATTGGGT
Found at i:938210 original size:24 final size:25
Alignment explanation
Indices: 938148--938234 Score: 74
Period size: 24 Copynumber: 3.5 Consensus size: 25
938138 TCGGGCCGGG
938148 TATATA-TATATATATTTAAATTAAA
1 TATATATTATAT-TATTTAAATTAAA
*
938173 TATATATT-TTTTATTTAAATTAAA
1 TATATATTATATTATTTAAATTAAA
* * *
938197 T-T-TATTAATATTATATATATATATA
1 TATATATT-ATATTATTTAAAT-TAAA
938222 TATATATATATAT
1 TATATAT-TATAT
938235 ATATATATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
22 4 0.08
23 1 0.02
24 23 0.46
25 12 0.24
26 2 0.04
27 7 0.14
28 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TATATATTATATTATTTAAATTAAA
Found at i:938215 original size:2 final size:2
Alignment explanation
Indices: 938204--938254 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
938194 AAATTTATTA
938204 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
938245 AT AT A- AT AT A
1 AT AT AT AT AT A
938255 ATTATTTTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 45 0.96
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:940056 original size:17 final size:17
Alignment explanation
Indices: 940031--940064 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
940021 TGGATTAATC
*
940031 TATTCATAGATCGGATA
1 TATTAATAGATCGGATA
940048 TATTAATAGATCGGATA
1 TATTAATAGATCGGATA
940065 CCAGTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (17 bp):
TATTAATAGATCGGATA
Found at i:949987 original size:24 final size:24
Alignment explanation
Indices: 949955--950010 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
949945 TTCACAGTCA
949955 ACTGATACATCAGCTCAGCATCGT
1 ACTGATACATCAGCTCAGCATCGT
949979 ACTGATACATCAGCTCAGCATCGT
1 ACTGATACATCAGCTCAGCATCGT
*
950003 GCTGATAC
1 ACTGATAC
950011 GAAGGATGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (24 bp):
ACTGATACATCAGCTCAGCATCGT
Found at i:954296 original size:2 final size:2
Alignment explanation
Indices: 954289--954325 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
954279 CAGAGAATAA
954289 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
954326 AATAGGCAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:955107 original size:2 final size:2
Alignment explanation
Indices: 955100--955133 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
955090 TTCATATCTC
955100 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
955134 TTTAATTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:959614 original size:35 final size:35
Alignment explanation
Indices: 959543--959615 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
959533 TCATAACTAA
* * * *
959543 TTATGTGATAAGGTTTAGGGTTTAGGATTTAGAGT
1 TTATGTGATAAGATTTAAGGTTTAAGATTTAAAGT
*
959578 TTATGTGATATGATTTAAGGTTTAA-AGTTTAAAGT
1 TTATGTGATAAGATTTAAGGTTTAAGA-TTTAAAGT
959613 TTA
1 TTA
959616 GGGTTTATGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 1 0.03
35 31 0.97
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (35 bp):
TTATGTGATAAGATTTAAGGTTTAAGATTTAAAGT
Found at i:961356 original size:26 final size:26
Alignment explanation
Indices: 961316--961402 Score: 138
Period size: 26 Copynumber: 3.3 Consensus size: 26
961306 CCTAGTATTG
* *
961316 GTTTTGGTGTTTGGTTCTCTGTCCCTT
1 GTTTT-GTGCTTGGTGCTCTGTCCCTT
*
961343 GTTTTTTGCTTGGTGCTCTGTCCCTT
1 GTTTTGTGCTTGGTGCTCTGTCCCTT
961369 GTTTTGTGCTTGGTGCTCTGTCCCTT
1 GTTTTGTGCTTGGTGCTCTGTCCCTT
961395 GTTTTGTG
1 GTTTTGTG
961403 TGTCTGCAGG
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
26 51 0.91
27 5 0.09
ACGTcount: A:0.00, C:0.20, G:0.26, T:0.54
Consensus pattern (26 bp):
GTTTTGTGCTTGGTGCTCTGTCCCTT
Found at i:961796 original size:17 final size:17
Alignment explanation
Indices: 961774--961810 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
961764 ATTCGAGTTT
*
961774 GAGTTCGAGCTTTAATC
1 GAGTTCGAGCTTGAATC
961791 GAGTTCGAGCTTGAATC
1 GAGTTCGAGCTTGAATC
961808 GAG
1 GAG
961811 CTCAAAATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (17 bp):
GAGTTCGAGCTTGAATC
Found at i:963108 original size:44 final size:44
Alignment explanation
Indices: 963039--963174 Score: 159
Period size: 44 Copynumber: 3.1 Consensus size: 44
963029 TTCATGAGTT
* *
963039 GAAGTGCCATTGACT-GTCAATGTTAGGCGAACTTGATAGAATTAC
1 GAAGTGCCATTGA-TGGTCCATGTTAGGTGAACTTGATAGAATT-C
* * * *
963084 -AAGTACCATTGATGGTCCATGTTAGGTGAATTTCATAGCATTC
1 GAAGTGCCATTGATGGTCCATGTTAGGTGAACTTGATAGAATTC
* * *
963127 GAAGTGCCATTGATGGTCCATGTCAGGTGAAGTTGATAGCATTC
1 GAAGTGCCATTGATGGTCCATGTTAGGTGAACTTGATAGAATTC
963171 GAAG
1 GAAG
963175 CTAACTGAGC
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
43 2 0.03
44 77 0.97
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (44 bp):
GAAGTGCCATTGATGGTCCATGTTAGGTGAACTTGATAGAATTC
Found at i:967751 original size:30 final size:30
Alignment explanation
Indices: 967717--967936 Score: 368
Period size: 30 Copynumber: 7.3 Consensus size: 30
967707 TCATGGACTT
* *
967717 CTTTTTCTTCTTTCTTTACCTCTTCTACTG
1 CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
967747 CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
1 CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
*
967777 CATTTTCTTCTTTCTTTTCCTCTTCTTCTG
1 CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
* *
967807 CCTTTTCTTCTTTCTTTACCTCTTCTTCTG
1 CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
*
967837 CATTTTCTTCTTTCTTTTCCTCTTCTTCTG
1 CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
* *
967867 CCTTTTCTACTTTCTTTTCCTCTTCTTCTG
1 CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
967897 CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
1 CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
967927 CTTTTTCTTC
1 CTTTTTCTTC
967937 CTCTTCTTCT
Statistics
Matches: 179, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 179 1.00
ACGTcount: A:0.03, C:0.31, G:0.03, T:0.63
Consensus pattern (30 bp):
CTTTTTCTTCTTTCTTTTCCTCTTCTTCTG
Found at i:967788 original size:60 final size:60
Alignment explanation
Indices: 967719--968079 Score: 499
Period size: 60 Copynumber: 6.2 Consensus size: 60
967709 ATGGACTTCT
* *
967719 TTTTCTTCTTTCTTTACCTCTTCTACTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCA
1 TTTTCTTCTTTCTTTTCCTCTTCTTCTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCA
* *
967779 TTTTCTTCTTTCTTTTCCTCTTCTTCTGCCTTTTCTTCTTTCTTTACCTCTTCTTCTGCA
1 TTTTCTTCTTTCTTTTCCTCTTCTTCTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCA
* * *
967839 TTTTCTTCTTTCTTTTCCTCTTCTTCTGCCTTTTCTACTTTCTTTTCCTCTTCTTCTGCT
1 TTTTCTTCTTTCTTTTCCTCTTCTTCTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCA
967899 TTTTCTTCTTTCTTTTCCTCTTCTTCTG------CTT-TTTC--TTCCTCTTCTTCTG-A
1 TTTTCTTCTTTCTTTTCCTCTTCTTCTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCA
* * ** *
967949 TTTTACTTCTTTCTTTACCTCTTCTTCTGCTTTTACTTCTTTCTTTTCCTCTTCTAATGCT
1 TTTT-CTTCTTTCTTTTCCTCTTCTTCTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCA
** * *
968010 TTTTCTTCTTTCTTTTCCTCTTCTTCTTTTTTTTCTACTTTCTTTTCCTCTTCTTCTGCT
1 TTTTCTTCTTTCTTTTCCTCTTCTTCTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCA
968070 TTTTCTTCTT
1 TTTTCTTCTT
968080 CTTCTTCTTC
Statistics
Matches: 270, Mismatches: 20, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
50 4 0.01
51 37 0.14
53 4 0.01
54 2 0.01
57 3 0.01
58 4 0.01
60 212 0.79
61 4 0.01
ACGTcount: A:0.04, C:0.30, G:0.03, T:0.64
Consensus pattern (60 bp):
TTTTCTTCTTTCTTTTCCTCTTCTTCTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCA
Found at i:967818 original size:90 final size:90
Alignment explanation
Indices: 967719--968079 Score: 492
Period size: 90 Copynumber: 4.1 Consensus size: 90
967709 ATGGACTTCT
967719 TTTTCTTCTTTCTTTACCTCTTCTACTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCATTTTC
1 TTTTCTTCTTTCTTTACCTCTTCTACTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCATTTTC
*
967784 TTCTTTCTTTTCCTCTTCTTCTGCC
66 TACTTTCTTTTCCTCTTCTTCTGCC
* * *
967809 TTTTCTTCTTTCTTTACCTCTTCTTCTGCATTTTCTTCTTTCTTTTCCTCTTCTTCTGCCTTTTC
1 TTTTCTTCTTTCTTTACCTCTTCTACTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCATTTTC
*
967874 TACTTTCTTTTCCTCTTCTTCTGCT
66 TACTTTCTTTTCCTCTTCTTCTGCC
* *
967899 TTTTCTTCTTTCTTTTCCTCTTCT--T-C---TGCTT-TTTC--TTCCTCTTCTTCTG-ATTTTA
1 TTTTCTTCTTTCTTTACCTCTTCTACTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCATTTT-
* *
967954 CTTCTTTCTTTACCTCTTCTTCTG-C
65 CTACTTTCTTTTCCTCTTCTTCTGCC
* * ***
967979 TTTTACTTCTTTCTTTTCCTCTTCTAATGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTTTTTTTT
1 TTTT-CTTCTTTCTTTACCTCTTCTACTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCATTTT
*
968044 CTACTTTCTTTTCCTCTTCTTCTGCT
65 CTACTTTCTTTTCCTCTTCTTCTGCC
968070 TTTTCTTCTT
1 TTTTCTTCTT
968080 CTTCTTCTTC
Statistics
Matches: 241, Mismatches: 17, Indels: 26
0.85 0.06 0.09
Matches are distributed among these distances:
80 8 0.03
81 56 0.23
83 5 0.02
84 5 0.02
87 5 0.02
88 5 0.02
90 149 0.62
91 8 0.03
ACGTcount: A:0.04, C:0.30, G:0.03, T:0.64
Consensus pattern (90 bp):
TTTTCTTCTTTCTTTACCTCTTCTACTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCATTTTC
TACTTTCTTTTCCTCTTCTTCTGCC
Found at i:967952 original size:21 final size:21
Alignment explanation
Indices: 967913--967957 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
967903 CTTCTTTCTT
* *
967913 TTCCTCTTCTTCTGCTTTTTC
1 TTCCTCTTCTTCTGATTTTAC
967934 TTCCTCTTCTTCTGATTTTAC
1 TTCCTCTTCTTCTGATTTTAC
967955 TTC
1 TTC
967958 TTTCTTTACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.04, C:0.31, G:0.04, T:0.60
Consensus pattern (21 bp):
TTCCTCTTCTTCTGATTTTAC
Found at i:967958 original size:51 final size:51
Alignment explanation
Indices: 967883--967987 Score: 174
Period size: 51 Copynumber: 2.1 Consensus size: 51
967873 CTACTTTCTT
* * * *
967883 TTCCTCTTCTTCTGCTTTTTCTTCTTTCTTTTCCTCTTCTTCTGCTTTTTC
1 TTCCTCTTCTTCTGATTTTACTTCTTTCTTTACCTCTTCTTCTGCTTTTAC
967934 TTCCTCTTCTTCTGATTTTACTTCTTTCTTTACCTCTTCTTCTGCTTTTAC
1 TTCCTCTTCTTCTGATTTTACTTCTTTCTTTACCTCTTCTTCTGCTTTTAC
967985 TTC
1 TTC
967988 TTTCTTTTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.04, C:0.30, G:0.04, T:0.62
Consensus pattern (51 bp):
TTCCTCTTCTTCTGATTTTACTTCTTTCTTTACCTCTTCTTCTGCTTTTAC
Found at i:968071 original size:21 final size:21
Alignment explanation
Indices: 968042--968113 Score: 101
Period size: 21 Copynumber: 3.4 Consensus size: 21
968032 CTTCTTTTTT
*
968042 TTCTACTTTCTTTTCCTCTTC
1 TTCTGCTTTCTTTTCCTCTTC
*
968063 TTCTGCTTT-TTCTTCTTCTTC
1 TTCTGCTTTCTT-TTCCTCTTC
*
968084 TTCTTCTTTCTTTTCCTCTTC
1 TTCTGCTTTCTTTTCCTCTTC
968105 TTCTGCTTT
1 TTCTGCTTT
968114 TCCACTGTCC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
20 2 0.05
21 40 0.91
22 2 0.05
ACGTcount: A:0.01, C:0.31, G:0.03, T:0.65
Consensus pattern (21 bp):
TTCTGCTTTCTTTTCCTCTTC
Found at i:968108 original size:30 final size:30
Alignment explanation
Indices: 967714--968108 Score: 257
Period size: 30 Copynumber: 13.1 Consensus size: 30
967704 AGTTCATGGA
* * *
967714 CTTCTTTTTCTTCTTTCTTTACCTCTTCTA
1 CTTCTTCTTCTTCTTTCTTTTCCTCTTCTT
* *
967744 CTGCTTTTTCTTCTTTCTTTTCCTCTTCTT
1 CTTCTTCTTCTTCTTTCTTTTCCTCTTCTT
*
967774 CTGCATT-TTCTTCTTTCTTTTCCTCTTCTT
1 CTTC-TTCTTCTTCTTTCTTTTCCTCTTCTT
* *
967804 CTGCCTT-TTCTTCTTTCTTTACCTCTTCTT
1 CT-TCTTCTTCTTCTTTCTTTTCCTCTTCTT
*
967834 CTGCATT-TTCTTCTTTCTTTTCCTCTTCTT
1 CTTC-TTCTTCTTCTTTCTTTTCCTCTTCTT
* *
967864 CTGCCTT-TTCTACTTTCTTTTCCTCTTCTT
1 CT-TCTTCTTCTTCTTTCTTTTCCTCTTCTT
* *
967894 CTGCTTTTTCTTCTTTCTTTTCCTCTTCTT
1 CTTCTTCTTCTTCTTTCTTTTCCTCTTCTT
* * * ** *
967924 CTGCTTTTTCTTCCTCTTCTTCTGATTTTACTT
1 CTTCTTCTTCTT-CT-TTCTTTTCCTCTT-CTT
* *
967957 CTTTCTTTACCTCTTCTTCTGCTTTTACTTCTTTCTT
1 C-TTC-TT-CTTCTTCTT-T-CTTTT-CCTC-TTCTT
*
967994 -TTCCTCTTCTAATGCTTT-TTCTT-CT-TTCTT
1 CTTCTTCTTCT--T-CTTTCTT-TTCCTCTTCTT
* *
968024 -TTCCTCTTCTTCTTT-TTTT--TCTACTTT
1 CTTCTTCTTCTTCTTTCTTTTCCTCTTC-TT
* *
968051 CTT-TTCCTCTTC-TTCTGCTT--T-TTCTT
1 CTTCTTCTTCTTCTTTCT-TTTCCTCTTCTT
968077 CTTCTTCTTCTTCTTTCTTTTCCTCTTCTT
1 CTTCTTCTTCTTCTTTCTTTTCCTCTTCTT
968107 CT
1 CT
968109 GCTTTTCCAC
Statistics
Matches: 304, Mismatches: 32, Indels: 58
0.77 0.08 0.15
Matches are distributed among these distances:
25 1 0.00
26 11 0.04
27 28 0.09
28 10 0.03
29 5 0.02
30 190 0.62
31 6 0.02
32 10 0.03
33 10 0.03
34 6 0.02
35 10 0.03
36 11 0.04
37 4 0.01
38 2 0.01
ACGTcount: A:0.03, C:0.30, G:0.03, T:0.64
Consensus pattern (30 bp):
CTTCTTCTTCTTCTTTCTTTTCCTCTTCTT
Found at i:968124 original size:24 final size:24
Alignment explanation
Indices: 968097--968162 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 24
968087 TTCTTTCTTT
968097 TCCTCTTCTTCTGCTTTTCCACTG
1 TCCTCTTCTTCTGCTTTTCCACTG
968121 T-C-C-TCTTCTGCTTTTCCACTG
1 TCCTCTTCTTCTGCTTTTCCACTG
*
968142 TCCT-TCTCTTCTTCTTTTCCA
1 TCCTCT-TCTTCTGCTTTTCCA
968163 TCGTCCTTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
21 19 0.51
22 2 0.05
23 1 0.03
24 15 0.41
ACGTcount: A:0.05, C:0.38, G:0.06, T:0.52
Consensus pattern (24 bp):
TCCTCTTCTTCTGCTTTTCCACTG
Found at i:968128 original size:42 final size:42
Alignment explanation
Indices: 968042--968134 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
968032 CTTCTTTTTT
** *
968042 TTCTACTTTCTTTTCCTCTTCTTCTGCTTTTTCTTCTTCTTC
1 TTCTACTTTCTTTTCCTCTTCTTCTGCTTTTTCCACTTCCTC
*
968084 TTCTTCTTTCTTTTCCTCTTCTTCTGC-TTTTCCACTGTCCTC
1 TTCTACTTTCTTTTCCTCTTCTTCTGCTTTTTCCACT-TCCTC
*
968126 TTCTGCTTT
1 TTCTACTTT
968135 TCCACTGTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
41 7 0.16
42 38 0.84
ACGTcount: A:0.02, C:0.32, G:0.04, T:0.61
Consensus pattern (42 bp):
TTCTACTTTCTTTTCCTCTTCTTCTGCTTTTTCCACTTCCTC
Found at i:968178 original size:27 final size:24
Alignment explanation
Indices: 968103--968182 Score: 105
Period size: 24 Copynumber: 3.5 Consensus size: 24
968093 CTTTTCCTCT
*
968103 TCTTCTGCTTTTCCACTGT-C--C
1 TCTTCTTCTTTTCCACTGTCCTTC
*
968124 TCTTCTGCTTTTCCACTGTCCTTC
1 TCTTCTTCTTTTCCACTGTCCTTC
968148 TCTTCTTCTTTTCCA-TCGTCCTTC
1 TCTTCTTCTTTTCCACT-GTCCTTC
968172 TCTTCTTCTTT
1 TCTTCTTCTTT
968183 AGAAGCCTGA
Statistics
Matches: 54, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
21 19 0.35
22 1 0.02
23 1 0.02
24 33 0.61
ACGTcount: A:0.04, C:0.36, G:0.06, T:0.54
Consensus pattern (24 bp):
TCTTCTTCTTTTCCACTGTCCTTC
Found at i:975291 original size:21 final size:21
Alignment explanation
Indices: 975267--975327 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
975257 AACTTTGAAA
975267 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
975288 AAAT-GTTTT-----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
975302 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
975323 AAATG
1 AAATG
975328 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 8 0.26
20 8 0.26
21 10 0.32
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.44
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:975305 original size:35 final size:36
Alignment explanation
Indices: 975259--975367 Score: 175
Period size: 35 Copynumber: 3.0 Consensus size: 36
975249 TGGCAACCAA
975259 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
975296 TTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
975331 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATGG-TTTTCAAAGTTTGGTAAATGTTT
975368 GTTGAAATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
35 34 0.51
36 7 0.10
37 26 0.39
ACGTcount: A:0.29, C:0.05, G:0.20, T:0.46
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:979815 original size:21 final size:21
Alignment explanation
Indices: 979791--979851 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
979781 AACTTTGAAA
979791 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
979812 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
979826 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
979847 AAATG
1 AAATG
979852 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:979898 original size:36 final size:36
Alignment explanation
Indices: 979783--979891 Score: 184
Period size: 35 Copynumber: 3.0 Consensus size: 36
979773 TGGCAACCAA
979783 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
979820 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
979855 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATGG-TTTTCAAAGTTTGGTAAATGTTT
979892 GTTGAAATAT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
35 35 0.51
36 7 0.10
37 27 0.39
ACGTcount: A:0.29, C:0.06, G:0.20, T:0.45
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:983051 original size:37 final size:37
Alignment explanation
Indices: 983009--983082 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
982999 GAGTACATCT
*
983009 CCTATGTTTAAAAATGTTGTAATGAGATAGATGTGTC
1 CCTATGTTTAAAAAGGTTGTAATGAGATAGATGTGTC
983046 CCTATGTTTAAAAAGGTTGTAATGAGATAGATGTGTC
1 CCTATGTTTAAAAAGGTTGTAATGAGATAGATGTGTC
983083 TTACAAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.36
Consensus pattern (37 bp):
CCTATGTTTAAAAAGGTTGTAATGAGATAGATGTGTC
Found at i:989254 original size:22 final size:22
Alignment explanation
Indices: 989229--989275 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
989219 TAAAAAGATA
989229 TGAGAGAACAAAGATAAAGAGT
1 TGAGAGAACAAAGATAAAGAGT
989251 TGAGAGAACAAAGATAAAGAGT
1 TGAGAGAACAAAGATAAAGAGT
989273 TGA
1 TGA
989276 CCACCTGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.53, C:0.04, G:0.28, T:0.15
Consensus pattern (22 bp):
TGAGAGAACAAAGATAAAGAGT
Found at i:991925 original size:13 final size:13
Alignment explanation
Indices: 991903--991934 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
991893 TCATGTTTAG
991903 ATTTTAAAAAAAT
1 ATTTTAAAAAAAT
*
991916 ATTTTTAAAAAAT
1 ATTTTAAAAAAAT
991929 ATTTTA
1 ATTTTA
991935 TTTTAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTTTAAAAAAAT
Found at i:994126 original size:200 final size:200
Alignment explanation
Indices: 993846--994247 Score: 623
Period size: 200 Copynumber: 2.0 Consensus size: 200
993836 TTAGTACCTA
* * *
993846 AACTTTTAATTTTTTTATAAAAATAATACATAAATTTTAGTTTTAGTTTCATTTTAGTACTTCGT
1 AACTTTTAATTTTTTTATAAAAACAATACATAAAGTTTAGTTTTAGTTTCATTTTAGTACTCCGT
993911 TCAAAATTTAACGTTAGGTACTAAAACGGACCAATACTTATAGTTAGGTACTAAACGTGTTAAGT
66 TCAAAATTTAACGTTAGGTACTAAAACGGACCAATACTTATAGTTAGGTACTAAACGTGTTAAGT
* * * * *
993976 TTTTAACGGTGGGGTATTAAAATGAAACGAAAACTAAACATTAGGTATGGTTTTGAAAAAAATTA
131 TTGTAACGGAGGGATACTAAAATAAAACGAAAACTAAACATTAGGTATGGTTTTG--AAAAATTA
994041 AAAGTTT
194 AAAGTTT
* * * *
994048 AACTTTTAATTTTTTT-TCAAAACCATACCTAAAGTTTAGTTTT-GATTTCATTTT-TTAC-CCG
1 AACTTTTAATTTTTTTATAAAAACAATACATAAAGTTTAGTTTTAG-TTTCATTTTAGTACTCC-
994109 GTTCAAAATTTAACGTTAGGTACTAAAACGGACCAATACTTATAGTTAGGTACTAAACGTGTTAA
64 GTTCAAAATTTAACGTTAGGTACTAAAACGGACCAATACTTATAGTTAGGTACTAAACGTGTTAA
*
994174 GTTTGTAACGGAGGGATACTAAGATAAAACGAAAACTAAACATTAGGTATGGTTTTGAAAAATTA
129 GTTTGTAACGGAGGGATACTAAAATAAAACGAAAACTAAACATTAGGTATGGTTTTGAAAAATTA
994239 AAAGTTT
194 AAAGTTT
994246 AA
1 AA
994248 ATACTAAAAC
Statistics
Matches: 185, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
198 17 0.09
199 1 0.01
200 120 0.65
201 31 0.17
202 16 0.09
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (200 bp):
AACTTTTAATTTTTTTATAAAAACAATACATAAAGTTTAGTTTTAGTTTCATTTTAGTACTCCGT
TCAAAATTTAACGTTAGGTACTAAAACGGACCAATACTTATAGTTAGGTACTAAACGTGTTAAGT
TTGTAACGGAGGGATACTAAAATAAAACGAAAACTAAACATTAGGTATGGTTTTGAAAAATTAAA
AGTTT
Found at i:998046 original size:21 final size:21
Alignment explanation
Indices: 998020--998070 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
998010 GTCGTGGAAA
998020 ATCGCAACGTGAACTTCGACT
1 ATCGCAACGTGAACTTCGACT
*
998041 ATCGCAACGTGAACTTGGACT
1 ATCGCAACGTGAACTTCGACT
998062 ATCGCAACG
1 ATCGCAACG
998071 AATTTAGACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (21 bp):
ATCGCAACGTGAACTTCGACT
Found at i:1001480 original size:14 final size:14
Alignment explanation
Indices: 1001461--1001492 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
1001451 GAAATTCAAC
1001461 AGAGAGAGAGAGGG
1 AGAGAGAGAGAGGG
*
1001475 AGAGAGGGAGAGGG
1 AGAGAGAGAGAGGG
1001489 AGAG
1 AGAG
1001493 GGAGTCTGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (14 bp):
AGAGAGAGAGAGGG
Found at i:1002705 original size:20 final size:20
Alignment explanation
Indices: 1002676--1002788 Score: 136
Period size: 20 Copynumber: 5.5 Consensus size: 20
1002666 CCAATAAAAT
1002676 AGAATCGCAATGCGATTGAG
1 AGAATCGCAATGCGATTGAG
* *
1002696 AGAGTCGCAACGCGATTTAGAAG
1 AGAATCGCAATGCGA-TT-G-AG
* *
1002719 AAAATCGCAATGCGACTGAG
1 AGAATCGCAATGCGATTGAG
1002739 AGAATCGCAATGCGATTGAG
1 AGAATCGCAATGCGATTGAG
* *
1002759 AGAATCGCAACGCGATTTAG
1 AGAATCGCAATGCGATTGAG
*
1002779 AAAATCGCAA
1 AGAATCGCAA
1002789 CGTTAAAAAG
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
20 60 0.76
21 3 0.04
22 2 0.03
23 14 0.18
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.18
Consensus pattern (20 bp):
AGAATCGCAATGCGATTGAG
Found at i:1002897 original size:12 final size:11
Alignment explanation
Indices: 1002877--1002922 Score: 51
Period size: 10 Copynumber: 4.3 Consensus size: 11
1002867 GACACGTATT
1002877 ACCACGACCACG
1 ACCACGACC-CG
*
1002889 ACCATGACCCG
1 ACCACGACCCG
1002900 ACC-CGACCCG
1 ACCACGACCCG
*
1002910 A-GACGACCCG
1 ACCACGACCCG
1002920 ACC
1 ACC
1002923 CGAGACTAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
10 15 0.54
11 5 0.18
12 8 0.29
ACGTcount: A:0.28, C:0.50, G:0.20, T:0.02
Consensus pattern (11 bp):
ACCACGACCCG
Found at i:1002918 original size:15 final size:15
Alignment explanation
Indices: 1002898--1002928 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1002888 GACCATGACC
1002898 CGACCCGACCCGAGA
1 CGACCCGACCCGAGA
1002913 CGACCCGACCCGAGA
1 CGACCCGACCCGAGA
1002928 C
1 C
1002929 TAGACGGCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.48, G:0.26, T:0.00
Consensus pattern (15 bp):
CGACCCGACCCGAGA
Found at i:1002945 original size:9 final size:9
Alignment explanation
Indices: 1002931--1002960 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
1002921 CCCGAGACTA
1002931 GACGGCGGC
1 GACGGCGGC
1002940 GACGGCGGC
1 GACGGCGGC
1002949 GACGGCGCGC
1 GACGGCG-GC
1002959 GA
1 GA
1002961 GAGTCCCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 16 0.80
10 4 0.20
ACGTcount: A:0.13, C:0.33, G:0.53, T:0.00
Consensus pattern (9 bp):
GACGGCGGC
Found at i:1003618 original size:15 final size:16
Alignment explanation
Indices: 1003598--1003664 Score: 75
Period size: 15 Copynumber: 4.1 Consensus size: 16
1003588 GCGCGCCGCC
1003598 GTCGGGTCGGGTCG-G
1 GTCGGGTCGGGTCGTG
**
1003613 GTCGGGTCGGGTCAAG
1 GTCGGGTCGGGTCGTG
1003629 G-CGGGTCGTGGTCGTG
1 GTCGGGTCG-GGTCGTG
1003645 GTCGTGGTCGTGGTCGTG
1 GTCG-GGTCG-GGTCGTG
1003663 GT
1 GT
1003665 AATACGTGTC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
15 20 0.44
16 8 0.18
17 2 0.04
18 15 0.33
ACGTcount: A:0.03, C:0.18, G:0.54, T:0.25
Consensus pattern (16 bp):
GTCGGGTCGGGTCGTG
Found at i:1003664 original size:6 final size:5
Alignment explanation
Indices: 1003598--1003660 Score: 65
Period size: 5 Copynumber: 11.8 Consensus size: 5
1003588 GCGCGCCGCC
*
1003598 GTCGG GTCGG GTCGG GTCGG GTCGG GTCAAG G-CGG GTCGTG GTCGTG
1 GTCGG GTCGG GTCGG GTCGG GTCGG GTC-GG GTCGG GTCG-G GTCG-G
1003645 GTCGTG GTCGTG GTCG
1 GTCG-G GTCG-G GTCG
1003661 TGGTAATACG
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
4 2 0.04
5 26 0.49
6 25 0.47
ACGTcount: A:0.03, C:0.19, G:0.54, T:0.24
Consensus pattern (5 bp):
GTCGG
Found at i:1003823 original size:20 final size:20
Alignment explanation
Indices: 1003798--1003851 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
1003788 TGGAAGCTCG
*
1003798 CGTTGCGATTTTCTTTTGAC
1 CGTTGCGATTTTCTTTTGAA
* *
1003818 CGTTGCGATTTTTTTTTTAA
1 CGTTGCGATTTTCTTTTGAA
1003838 CGTTGCGATTTTCT
1 CGTTGCGATTTTCT
1003852 AAATCGCGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.11, C:0.17, G:0.19, T:0.54
Consensus pattern (20 bp):
CGTTGCGATTTTCTTTTGAA
Found at i:1006451 original size:17 final size:18
Alignment explanation
Indices: 1006429--1006464 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1006419 TTTTACCAGA
1006429 TTAAAA-ACCAGATTTTT
1 TTAAAACACCAGATTTTT
*
1006446 TTAAAACACCGGATTTTT
1 TTAAAACACCAGATTTTT
1006464 T
1 T
1006465 CAAACCGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (18 bp):
TTAAAACACCAGATTTTT
Found at i:1006558 original size:17 final size:16
Alignment explanation
Indices: 1006524--1006555 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1006514 TTATGATCCG
*
1006524 AACCGATTTTTTTATT
1 AACCGATTTTTTGATT
1006540 AACCGATTTTTTGATT
1 AACCGATTTTTTGATT
1006556 TAATAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.12, G:0.09, T:0.53
Consensus pattern (16 bp):
AACCGATTTTTTGATT
Found at i:1020350 original size:22 final size:20
Alignment explanation
Indices: 1020305--1020353 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
1020295 ATTTAATTAT
* *
1020305 TTTAATTTTATCATCGATCT
1 TTTAATTTTATCATAGATCA
1020325 TTTAATTTTATCAATTAGATCA
1 TTTAATTTTATC-A-TAGATCA
1020347 TTTAATT
1 TTTAATT
1020354 ATTTAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 12 0.48
21 1 0.04
22 12 0.48
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.55
Consensus pattern (20 bp):
TTTAATTTTATCATAGATCA
Found at i:1020434 original size:21 final size:24
Alignment explanation
Indices: 1020386--1020434 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
1020376 TATTAGTCAT
*
1020386 TAATGGTTAACAAAAATATTGATG
1 TAATGGTTAACAAAAATATTGATA
1020410 TAATGGTTAA-AAAAAT-TTG-TA
1 TAATGGTTAACAAAAATATTGATA
1020431 TAAT
1 TAAT
1020435 TACATTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 5 0.21
22 3 0.12
23 6 0.25
24 10 0.42
ACGTcount: A:0.47, C:0.02, G:0.14, T:0.37
Consensus pattern (24 bp):
TAATGGTTAACAAAAATATTGATA
Found at i:1020467 original size:15 final size:15
Alignment explanation
Indices: 1020447--1020477 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1020437 CATTTAATCC
1020447 TTAATATTTATATAT
1 TTAATATTTATATAT
1020462 TTAATATTTATATAT
1 TTAATATTTATATAT
1020477 T
1 T
1020478 ATATCAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTAATATTTATATAT
Found at i:1020468 original size:7 final size:8
Alignment explanation
Indices: 1020450--1020481 Score: 50
Period size: 7 Copynumber: 4.2 Consensus size: 8
1020440 TTAATCCTTA
1020450 ATATTTAT
1 ATATTTAT
1020458 ATATTTA-
1 ATATTTAT
1020465 ATATTTAT
1 ATATTTAT
1020473 ATA-TTAT
1 ATATTTAT
1020480 AT
1 AT
1020482 CAATGTAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 13 0.57
8 10 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
ATATTTAT
Found at i:1022403 original size:2 final size:2
Alignment explanation
Indices: 1022396--1022446 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
1022386 TTGGTAATTA
1022396 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1022438 AT AT AT AT A
1 AT AT AT AT A
1022447 CACGTGTCTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1028742 original size:3 final size:3
Alignment explanation
Indices: 1028734--1028777 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
1028724 TTTTACTTTT
1028734 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1028778 TTTGACATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:1029635 original size:14 final size:14
Alignment explanation
Indices: 1029598--1029636 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
1029588 TAATCTTTTG
1029598 TTTTCACAAATTTA
1 TTTTCACAAATTTA
*
1029612 -TTTCAAAAATTTA
1 TTTTCACAAATTTA
1029625 TTTTCACAAATT
1 TTTTCACAAATT
1029637 ATCATAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (14 bp):
TTTTCACAAATTTA
Found at i:1031462 original size:35 final size:36
Alignment explanation
Indices: 1031412--1031483 Score: 103
Period size: 35 Copynumber: 2.0 Consensus size: 36
1031402 ATTGAAAAAT
*
1031412 ATTTATATATATTTTTTAAAAAATTTAAATTCATAAA
1 ATTTATATATATTTTTTAAAAAATTTAAAAT-ATAAA
*
1031449 ATTTATAT-T-TTTTTTACAAAATTTAAAATATAAA
1 ATTTATATATATTTTTTAAAAAATTTAAAATATAAA
1031483 A
1 A
1031484 AAGTTTAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
34 6 0.18
35 18 0.55
36 1 0.03
37 8 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (36 bp):
ATTTATATATATTTTTTAAAAAATTTAAAATATAAA
Found at i:1050985 original size:3 final size:3
Alignment explanation
Indices: 1050977--1051072 Score: 129
Period size: 3 Copynumber: 32.0 Consensus size: 3
1050967 TTAATATATT
* * *
1050977 TAA TAA TAA AAA TAA TAA TAA TAA TAA TAA TAA TAA AAA TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
1051025 TAA TAA TAT TAA TAA TGA TAA TAA TAA TAT TAA TAA TAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1051073 AATGGATAAA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:1051080 original size:12 final size:11
Alignment explanation
Indices: 1050979--1051087 Score: 61
Period size: 12 Copynumber: 9.9 Consensus size: 11
1050969 AATATATTTA
1050979 ATAATAAAA--
1 ATAATAAAATG
*
1050988 ATAATAATAATA
1 ATAATAA-AATG
*
1051000 ATAATAATAATA
1 ATAATAA-AATG
*
1051012 AAAATAATAATG
1 ATAATAA-AATG
*
1051024 ATAATAATAT-
1 ATAATAAAATG
1051034 -TAAT--AATG
1 ATAATAAAATG
1051042 ATAATAATAAT-
1 ATAATAA-AATG
1051053 ATTAATAATAATG
1 A-TAATAA-AATG
1051066 ATAATAAAATGG
1 ATAATAAAAT-G
*
1051078 ATAAAAAAAT
1 ATAATAAAAT
1051088 AGTATCTTCA
Statistics
Matches: 83, Mismatches: 6, Indels: 19
0.77 0.06 0.18
Matches are distributed among these distances:
7 2 0.02
9 15 0.18
10 2 0.02
11 6 0.07
12 57 0.69
13 1 0.01
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (11 bp):
ATAATAAAATG
Found at i:1051567 original size:114 final size:114
Alignment explanation
Indices: 1051321--1052442 Score: 1837
Period size: 114 Copynumber: 9.9 Consensus size: 114
1051311 GCTCTTGATG
*
1051321 AGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAC-
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT-CT
* * * *
1051385 CTGGTAATGTTGATCCATCAA-CTGATGAATTCAAGCAAAAGGTTGAACA
65 CTGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
* *
1051434 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* * *
1051499 TGGAAAAGAATGATCCATCAA-GTGATGAATTTAAACAAAAGGTTGAACA
66 TGGAAAAG-ATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
*
1051548 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
*
1051613 TGGAAACGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
*
1051662 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* *
1051727 TGGAAAAGAATGATCCATCAA-GTGATGAATTTAAGCAAAAGGTTGAACA
66 TGGAAAAG-ATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
1051776 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* * * * * *
1051841 TGGAAAGGATGATCCACCAA-ATGATGGATTCAGGTAAAAGGTTGAACA
66 TGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
* *
1051889 AATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
*
1051954 TGGAAACGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
1052003 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
*
1052068 TGGAAACGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
1052117 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* * * * * *
1052182 TGGAAAGGATGATCCACCAA-ATGATGGATTCAGGTAAAAGGTTGAACA
66 TGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
*
1052230 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
*
1052295 TGGAAACGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
66 TGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
*
1052344 AGTTCTTCTCATTATGAACTT-TCTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCT
1 AGTTCTTCTCATTATGAACTTCT-TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
1052408 CTGGAAACA-ATGATCCATCAATTTGATGAATTCAA
65 CTGGAAA-AGATGATCCATCAATTTGATGAATTCAA
1052443 ATCTTTGCTA
Statistics
Matches: 948, Mismatches: 53, Indels: 15
0.93 0.05 0.01
Matches are distributed among these distances:
112 1 0.00
113 300 0.32
114 635 0.67
115 12 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (114 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
TGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACA
Found at i:1051944 original size:341 final size:341
Alignment explanation
Indices: 1051321--1052442 Score: 1975
Period size: 341 Copynumber: 3.3 Consensus size: 341
1051311 GCTCTTGATG
* *
1051321 AGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAC-
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTT-CT
* * * * *
1051385 CTGGTAATGTTGATCCATCAA-CTGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTAT
65 CTGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTAT
* *
1051449 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATC
130 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG-AAAGGATGATC
* * * * ***
1051514 CATCAAGTGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTT
194 CACCAAATGATGGATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTT
1051579 CTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATT
259 CTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATT
1051644 CAAGCAAAAGGTTGAACA
324 CAAGCAAAAGGTTGAACA
1051662 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
* *
1051727 TGGAAAAGAATGATCCATCAA-GTGATGAATTTAAGCAAAAGGTTGAACAAGTTCTTCTCATTAT
66 TGGAAAAG-ATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTAT
1051791 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGGATGATCC
130 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGGATGATCC
*
1051856 ACCAAATGATGGATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTC
195 ACCAAATGATGGATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTC
1051921 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATTC
260 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATTC
1051986 AAGCAAAAGGTTGAACA
325 AAGCAAAAGGTTGAACA
*
1052003 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
*
1052068 TGGAAACGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATG
66 TGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATG
1052133 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGGATGATCCA
131 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGGATGATCCA
1052198 CCAAATGATGGATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCT
196 CCAAATGATGGATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCT
1052263 TCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATTCA
261 TCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATTCA
1052328 AGCAAAAGGTTGAACA
326 AGCAAAAGGTTGAACA
1052344 AGTTCTTCTCATTATGAACTT-TCTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCT
1 AGTTCTTCTCATTATGAACTTCT-TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCT
1052408 CTGGAAACA-ATGATCCATCAATTTGATGAATTCAA
65 CTGGAAA-AGATGATCCATCAATTTGATGAATTCAA
1052443 ATCTTTGCTA
Statistics
Matches: 751, Mismatches: 25, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
340 14 0.02
341 634 0.84
342 103 0.14
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (341 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC
TGGAAAAGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATG
AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGGATGATCCA
CCAAATGATGGATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCT
TCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATTCA
AGCAAAAGGTTGAACA
Found at i:1052172 original size:455 final size:454
Alignment explanation
Indices: 1051321--1052443 Score: 1919
Period size: 455 Copynumber: 2.5 Consensus size: 454
1051311 GCTCTTGATG
*
1051321 AGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAC-
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT-CT
* * * *
1051385 CTGGTAATGTTGATCCATCAACTGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATG
65 CTGGAAACGATGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATG
* *
1051450 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAATGATCC
130 AATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAACG-ATGATCC
* *
1051515 ATCAA-GTGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTT
194 ATCAATTTGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTT
1051579 CTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATT
259 CTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATT
1051644 CAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT
324 CAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT
* * *
1051709 CTCATTATGAACCTTCTCTGGAAAAGAATGATCCATCAAGTGATGAATTTAAGCAAAAGGTTGAA
389 CTCATTATGAACCTTCTCTGG-AAAGAATGATCCACCAAATGATGAATTCAAGCAAAAGGTTGAA
1051774 CA
453 CA
1051776 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* * * * *
1051841 TGGAAAGGATGATCCACCAAATGATGGATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGA
66 TGGAAACGATGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
*
1051906 ATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCAT
131 ATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAACGATGATCCAT
* *
1051971 CAATTTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCT
196 CAATTTGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCT
1052036 TCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATTCA
261 TCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATTCA
1052101 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
326 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * * *
1052166 CATTATGAACTTTCTCTGGAAAGGATGATCCACCAAATGATGGATTCAGGTAAAAGGTTGAACA
391 CATTATGAACCTTCTCTGGAAAGAATGATCCACCAAATGATGAATTCAAGCAAAAGGTTGAACA
*
1052230 AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* *
1052295 TGGAAACGATGATCCATCAATTTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATG
66 TGGAAACGATGATCCATCAA-ATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATG
*
1052360 AACTTTC-TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAACAATGATCC
130 AA-TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAACGATGATCC
1052424 ATCAATTTGATGAATTCAAA
194 ATCAATTTGATGAATTCAAA
1052444 TCTTTGCTAA
Statistics
Matches: 629, Mismatches: 35, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
454 133 0.21
455 492 0.78
456 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (454 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
TGGAAACGATGATCCATCAAATGATGAATTCAAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
ATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAACGATGATCCAT
CAATTTGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCT
TCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAACGATGATCCATCAATTTGATGAATTCA
AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
CATTATGAACCTTCTCTGGAAAGAATGATCCACCAAATGATGAATTCAAGCAAAAGGTTGAACA
Found at i:1053163 original size:50 final size:50
Alignment explanation
Indices: 1053090--1053230 Score: 273
Period size: 50 Copynumber: 2.8 Consensus size: 50
1053080 CTTACCAAAA
*
1053090 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTTTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1053140 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1053190 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT
1053231 GGCAAATTCA
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 90 1.00
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (50 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
Found at i:1053378 original size:133 final size:133
Alignment explanation
Indices: 1053140--1053510 Score: 733
Period size: 133 Copynumber: 2.8 Consensus size: 133
1053130 TTTGTCTAAT
1053140 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAATCAGATCAGATAACTC
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAATCAGATCAGATAACTC
1053205 AAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATTCACTGATTGGTTCTGTTA
66 AAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATTCACTGATTGGTTCTGTTA
1053270 AAC
131 AAC
1053273 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAATCAGATCAGATAACTC
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAATCAGATCAGATAACTC
*
1053338 AAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATTCATTGATTGGTTCTGTTA
66 AAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATTCACTGATTGGTTCTGTTA
1053403 AAC
131 AAC
1053406 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAATCAGATCAGATAACTC
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAATCAGATCAGATAACTC
1053471 AAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
66 AAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
1053511 TCATTTAATG
Statistics
Matches: 237, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 237 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (133 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAATCAGATCAGATAACTC
AAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATTCACTGATTGGTTCTGTTA
AAC
Found at i:1054631 original size:1 final size:1
Alignment explanation
Indices: 1054620--1054714 Score: 127
Period size: 1 Copynumber: 95.0 Consensus size: 1
1054610 TTGACCCCTC
* * * *
1054620 TTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTCTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
1054685 CTTTTTTTTTTTTTTTTCTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1054715 CTTCAAGCAT
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 80 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (1 bp):
T
Found at i:1054642 original size:19 final size:19
Alignment explanation
Indices: 1054620--1054714 Score: 145
Period size: 20 Copynumber: 4.8 Consensus size: 19
1054610 TTGACCCCTC
1054620 TTTTTTCTTTTTTTTTTTTT
1 TTTTTTC-TTTTTTTTTTTT
*
1054640 TTTTTTTTTTTTCTTTTTTT
1 TTTTTTCTTTTT-TTTTTTT
*
1054660 TTTTTTCTTTTCTTTTTTT
1 TTTTTTCTTTTTTTTTTTT
1054679 TTTTTTCTTTTTTTTTTTT
1 TTTTTTCTTTTTTTTTTTT
1054698 TTTTCTTCTTTTTTTTT
1 TTTT-TTCTTTTTTTTT
1054715 CTTCAAGCAT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
19 34 0.49
20 35 0.51
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (19 bp):
TTTTTTCTTTTTTTTTTTT
Found at i:1054655 original size:33 final size:32
Alignment explanation
Indices: 1054621--1054714 Score: 143
Period size: 33 Copynumber: 2.9 Consensus size: 32
1054611 TGACCCCTCT
*
1054621 TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC
*
1054653 TTTTTTTTTTTTTCTTTTCTTTTTTTTTTTTTC
1 TTTTTTTTTTTTT-TTTTTTTTTTTTTTTTTTC
* *
1054686 TTTTTTTTTTTTTTTTCTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1054715 CTTCAAGCAT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 25 0.45
33 31 0.55
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (32 bp):
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC
Found at i:1067472 original size:3 final size:3
Alignment explanation
Indices: 1067464--1067564 Score: 123
Period size: 3 Copynumber: 34.0 Consensus size: 3
1067454 TTAATATATT
* * *
1067464 TAA TAA TAA AAA AAA T-A TAA TAA TAA TAA TAA TAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
1067511 TAA TGA TAA TAA TAT TAA TAA TGA TAA TAA TAA TAT TAA TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1067559 TAA TAA
1 TAA TAA
1067565 AATGGATAAA
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
2 2 0.02
3 81 0.98
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:1067572 original size:12 final size:11
Alignment explanation
Indices: 1067475--1067577 Score: 58
Period size: 12 Copynumber: 9.4 Consensus size: 11
1067465 AATAATAAAA
1067475 AAAAT-ATAAT
1 AAAATGATAAT
*
1067485 AATAATAATAAT
1 AA-AATGATAAT
* *
1067497 AATAATAAAAAT
1 AA-AATGATAAT
1067509 AATAATGATAAT
1 AA-AATGATAAT
*
1067521 AATAT--TAAT
1 AAAATGATAAT
1067530 --AATGATAAT
1 AAAATGATAAT
1067539 AATAAT-ATTAAT
1 AA-AATGA-TAAT
1067551 AATAATGATAAT
1 AA-AATGATAAT
1067563 AAAATGGATAA-
1 AAAAT-GATAAT
1067574 AAAA
1 AAAA
1067578 AATAGTATCT
Statistics
Matches: 78, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
7 2 0.03
9 8 0.10
10 2 0.03
11 13 0.17
12 52 0.67
13 1 0.01
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (11 bp):
AAAATGATAAT
Found at i:1073281 original size:227 final size:227
Alignment explanation
Indices: 1072707--1073482 Score: 1060
Period size: 227 Copynumber: 3.5 Consensus size: 227
1072697 GCAAAGATTC
* *
1072707 AAATCCATCATTCAATGGATCAACATTTCC-GGAAGAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATTCATCATTCAATGGATCAACATTGCCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAG
*
1072771 AAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATG
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATG
* *** ** *
1072836 GATCAGCATTGTTAGGTCGAGTTCATAATGAGAAGAACTCATTTGAAGAA--AATGAAGAAGTTC
131 GATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA-GAAGAAGTTC
* * *
1072899 ATAATGAGAAGAACTTGTTCAA-CTTTTCGCTC
195 ATAATGAGAAGAATTTGTTCAACCTTTTTGCTT
* * * **
1072931 GAATTCATCACTCGATGGATCAAC-TTGTTAGGAAGAGTTCATAATGAGAAGAACTCATCT---G
1 AAATTCATCATTCAATGGATCAACATTGCCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAG
*
1072992 AA-GAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATTATTCGATG
66 AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATG
*
1073056 GATCAACATTACCAGGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
131 GATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
*
1073121 TAATAAGAAGAATTTGTTCAACCTTTTTGCTT
196 TAATGAGAAGAATTTGTTCAACCTTTTTGCTT
* * *
1073153 AAATTCATTATTCAATGGATCAGCATTGCCAGGTCA-AGTTCATAATGAGAAGAACTCATCTGAA
1 AAATTCATCATTCAATGGATCAACATTGCCAGG-AAGAGTTCATAATGAGAAGAACTCATCTGAA
* * * *
1073217 GAAGGAATAAGAAGTTCATAATGAGAAGAGCTTATTCAACCTTTT-GCTCGAATTCATCATTCGA
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTTGAATTCATCATTCGA
* *
1073281 TGGATCAACTTTTCCAGAGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGT
129 TGGATCAACATTACCAG-GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGT
*
1073345 TCATAATGAGAAGAATTTGTTTAACC-TTTTGCTT
193 TCATAATGAGAAGAATTTGTTCAACCTTTTTGCTT
* * * * *
1073379 TAATTCATCA-CCTAATGGATTAGCATTGCCAGAGAA-AGTTCATAATGAGAAGAACTCATATGA
1 AAATTCATCATTC-AATGGATCAACATTGCCAG-GAAGAGTTCATAATGAGAAGAACTCATCTGA
*
1073442 AGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAAC
64 AGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAAC
1073483 CTTTGTTTGA
Statistics
Matches: 492, Mismatches: 46, Indels: 27
0.87 0.08 0.05
Matches are distributed among these distances:
220 103 0.21
221 33 0.07
222 29 0.06
223 33 0.07
224 51 0.10
225 2 0.00
226 102 0.21
227 131 0.27
228 8 0.02
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (227 bp):
AAATTCATCATTCAATGGATCAACATTGCCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAG
AAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAATTCATCATTCGATG
GATCAACATTACCAGGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
TAATGAGAAGAATTTGTTCAACCTTTTTGCTT
Found at i:1073342 original size:113 final size:113
Alignment explanation
Indices: 1072712--1073486 Score: 1006
Period size: 113 Copynumber: 6.9 Consensus size: 113
1072702 GATTCAAATC
* *
1072712 CATCATTCAATGGATCAACATTTCC-GGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGA
1 CATCATTCGATGGATCAACATTTCCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1072776 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTTGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATT
* * ** *
1072824 CATCATTCGATGGATCAGCATTGT-TAGGTCGAGTTCATAATGAGAAGAACTCATTTGAAGAA--
1 CATCATTCGATGGATCAACATT-TCCAGG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
*
1072886 AATGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTCGAATT
64 AA-GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATT
* *
1072936 CATCACTCGATGGATCAAC-TTGT-TAGGAAGAGTTCATAATGAGAAGAACTCATCT---GAA-G
1 CATCATTCGATGGATCAACATT-TCCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGG
1072995 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTCGCTTGAATT
64 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATT
* * *
1073044 CATTATTCGATGGATCAACATTACCAGGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTTCCAGGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * * *
1073109 AGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTTGCTTAAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATT
* * * * *
1073158 CATTATTCAATGGATCAGCATTGCCAGGTCAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTTCCAGG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * * *
1073223 ATAAGAAGTTCATAATGAGAAGAGCTTATTCAACCTTTT-GCTCGAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATT
*
1073271 CATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTCGATGGATCAACATTTCCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * *
1073336 AGAAGAAGTTCATAATGAGAAGAATTTGTTTAACCTTTT-GCTTTAATT
65 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATT
* * * * * *
1073384 CATCA-CCTAATGGATTAGCATTGCCAGAGAAAGTTCATAATGAGAAGAACTCATATGAAGAAGG
1 CATCATTC-GATGGATCAACATTTCCAG-GAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
*
1073448 AAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTT
64 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
1073487 GTTTGATGCT
Statistics
Matches: 590, Mismatches: 57, Indels: 31
0.87 0.08 0.05
Matches are distributed among these distances:
108 66 0.11
109 34 0.06
111 34 0.06
112 87 0.15
113 262 0.44
114 106 0.18
115 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (113 bp):
CATCATTCGATGGATCAACATTTCCAGGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTCGCTTGAATT
Found at i:1075598 original size:2 final size:2
Alignment explanation
Indices: 1075591--1075624 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1075581 AGTCATGTAA
1075591 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1075625 TTTGTTTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1075793 original size:16 final size:15
Alignment explanation
Indices: 1075771--1075817 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
1075761 ATATTTTAAA
1075771 TAAATAAATATATTT
1 TAAATAAATATATTT
*
1075786 TAAA-ATAATATGATTA
1 TAAATA-AATAT-ATTT
*
1075802 TAATTAAATATATTT
1 TAAATAAATATATTT
1075817 T
1 T
1075818 GGATTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
14 1 0.04
15 13 0.50
16 11 0.42
17 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
TAAATAAATATATTT
Found at i:1079466 original size:6 final size:6
Alignment explanation
Indices: 1079455--1079512 Score: 116
Period size: 6 Copynumber: 9.7 Consensus size: 6
1079445 TACATACATA
1079455 CCATCT CCATCT CCATCT CCATCT CCATCT CCATCT CCATCT CCATCT
1 CCATCT CCATCT CCATCT CCATCT CCATCT CCATCT CCATCT CCATCT
1079503 CCATCT CCAT
1 CCATCT CCAT
1079513 GATCTTATAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (6 bp):
CCATCT
Found at i:1080585 original size:18 final size:18
Alignment explanation
Indices: 1080562--1080604 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
1080552 CGACCGCCAA
*
1080562 TATTTTTA-ATTAATTTTT
1 TATTTTTATATT-ATATTT
1080580 TATTTTTATATTATATTT
1 TATTTTTATATTATATTT
1080598 TATTTTT
1 TATTTTT
1080605 CTCTTGTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TATTTTTATATTATATTT
Found at i:1102821 original size:3 final size:3
Alignment explanation
Indices: 1102813--1102843 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
1102803 TGGGTAGGAT
1102813 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1102844 CCTATCTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1103074 original size:56 final size:59
Alignment explanation
Indices: 1102997--1103122 Score: 145
Period size: 62 Copynumber: 2.2 Consensus size: 59
1102987 GGTCAGTTCA
* *
1102997 ATTTTT-AAAATATTTATAATTTTGT-CA-A-ACAAAATTTTTATAATTAAGTCACTCT
1 ATTTTTAAAAATATTTATAATTTGGTCCACATACAAAATCTTTATAATTAAGTCACTCT
*
1103052 ATTTTTAAAAATA-TTATCAATTTGGTCACCACATTAGAAAATCTTTATAATTAAGTCACTCT
1 ATTTTTAAAAATATTTAT-AATTTGGT--CCACA-TACAAAATCTTTATAATTAAGTCACTCT
*
1103114 ATGTTTAAA
1 ATTTTTAAA
1103123 CCCAGAATCT
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
55 10 0.17
56 13 0.22
59 2 0.03
60 1 0.02
62 33 0.56
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.44
Consensus pattern (59 bp):
ATTTTTAAAAATATTTATAATTTGGTCCACATACAAAATCTTTATAATTAAGTCACTCT
Found at i:1103908 original size:45 final size:44
Alignment explanation
Indices: 1103858--1103944 Score: 129
Period size: 45 Copynumber: 2.0 Consensus size: 44
1103848 AAAATAATAA
* * *
1103858 TTTAGGTAGCGCCCAATATTAACATTTTCGATAGAAAAAATAACG
1 TTTAGGTAACGCCCAATATTAACATTCTAG-TAGAAAAAATAACG
*
1103903 TTTAGGTAACGCCTAATATTAACATTCTAGTAGAAAAAATAA
1 TTTAGGTAACGCCCAATATTAACATTCTAGTAGAAAAAATAA
1103945 TATTTTAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
44 12 0.32
45 26 0.68
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (44 bp):
TTTAGGTAACGCCCAATATTAACATTCTAGTAGAAAAAATAACG
Found at i:1104594 original size:28 final size:30
Alignment explanation
Indices: 1104537--1104613 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 30
1104527 CTGATTATTA
* *
1104537 TATATTATTATCAATGTATATTAATTATTTT
1 TATAATATTATCAA-GTATATTAAATATTTT
1104568 T-TAATGATTATCAA-TAT-TTAAATATTTT
1 TATAAT-ATTATCAAGTATATTAAATATTTT
*
1104596 TATAATATTA-CAAATATA
1 TATAATATTATCAAGTATA
1104614 ACATTAATAC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
27 3 0.08
28 18 0.45
29 7 0.17
30 3 0.08
31 9 0.22
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.52
Consensus pattern (30 bp):
TATAATATTATCAAGTATATTAAATATTTT
Found at i:1105293 original size:10 final size:10
Alignment explanation
Indices: 1105278--1105303 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1105268 ATGAACATAT
1105278 GTTTACACCA
1 GTTTACACCA
1105288 GTTTACACCA
1 GTTTACACCA
1105298 GTTTAC
1 GTTTAC
1105304 GTATTAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (10 bp):
GTTTACACCA
Found at i:1106184 original size:17 final size:18
Alignment explanation
Indices: 1106147--1106181 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1106137 CACAATAGAT
1106147 ATACATATGGTTATTAAA
1 ATACATATGGTTATTAAA
1106165 ATACATAT-GTT-TTAAA
1 ATACATATGGTTATTAAA
1106181 A
1 A
1106182 ATAAATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 3 0.18
18 8 0.47
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.40
Consensus pattern (18 bp):
ATACATATGGTTATTAAA
Found at i:1113496 original size:21 final size:21
Alignment explanation
Indices: 1113470--1113534 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
1113460 CTATTGTTTT
1113470 TTTATTTTTATAATTGAATCC
1 TTTATTTTTATAATTGAATCC
* ** **
1113491 TTTATTTTTTTTCAATTTTATTT
1 TTTA-TTTTTAT-AATTGAATCC
1113514 TTTATTTTTATAATTGAATCC
1 TTTATTTTTATAATTGAATCC
1113535 CCTAATTTTT
Statistics
Matches: 32, Mismatches: 10, Indels: 4
0.70 0.22 0.09
Matches are distributed among these distances:
21 10 0.31
22 12 0.38
23 10 0.31
ACGTcount: A:0.25, C:0.08, G:0.03, T:0.65
Consensus pattern (21 bp):
TTTATTTTTATAATTGAATCC
Found at i:1113544 original size:44 final size:43
Alignment explanation
Indices: 1113447--1113544 Score: 128
Period size: 44 Copynumber: 2.3 Consensus size: 43
1113437 CTTTTATAGG
*
1113447 TCCCCTAA--TTTTTCTATTGTTTTTTTATTTTTATAATTGAA
1 TCCCCTAATTTTTTTCAATTGTTTTTTTATTTTTATAATTGAA
** * *
1113488 TCCTTTATTTTTTTTCAATTTTATTTTTTATTTTTATAATTGAA
1 TCCCCTAATTTTTTTCAATTGT-TTTTTTATTTTTATAATTGAA
1113532 TCCCCTAATTTTT
1 TCCCCTAATTTTT
1113545 ATAGTCCTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
41 5 0.11
43 10 0.22
44 31 0.67
ACGTcount: A:0.21, C:0.12, G:0.03, T:0.63
Consensus pattern (43 bp):
TCCCCTAATTTTTTTCAATTGTTTTTTTATTTTTATAATTGAA
Found at i:1113559 original size:44 final size:44
Alignment explanation
Indices: 1113467--1113615 Score: 128
Period size: 44 Copynumber: 3.5 Consensus size: 44
1113457 TTTCTATTGT
** * * **
1113467 TTTTTTATTTTTATAATTGAATCCTTTATTTTTTTTCAATTTTA
1 TTTTTTATTTTTATAATTGAATCCCCTAATTTTTATCAATCCTA
*
1113511 TTTTTTATTTTTATAATTGAATCCCCTAATTTTTAT-AGTCCTA
1 TTTTTTATTTTTATAATTGAATCCCCTAATTTTTATCAATCCTA
* * * *
1113554 CTTTTTATCTTTATAATTGAAGT---TTTATTTTT-TCAATCCTA
1 TTTTTTATTTTTATAATTGAA-TCCCCTAATTTTTATCAATCCTA
**
1113595 TTTTTTTACATTTATAATTGA
1 -TTTTTTATTTTTATAATTGA
1113616 TTAACCTAAG
Statistics
Matches: 87, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
40 1 0.01
41 13 0.15
42 17 0.20
43 23 0.26
44 33 0.38
ACGTcount: A:0.25, C:0.10, G:0.04, T:0.61
Consensus pattern (44 bp):
TTTTTTATTTTTATAATTGAATCCCCTAATTTTTATCAATCCTA
Found at i:1113683 original size:42 final size:42
Alignment explanation
Indices: 1113601--1113927 Score: 134
Period size: 42 Copynumber: 7.7 Consensus size: 42
1113591 CCTATTTTTT
* * * * *
1113601 TACATTTATAATTGA-TTAACCTAAGTTTGTCAATCTCACTTTG
1 TACATTTATAATTGAGCT--CCTAATTTTTTTAATCTCACTTTA
*
1113644 TACATTTATAATTGAGCTCCTAATTTTTTTAATATCACTTTA
1 TACATTTATAATTGAGCTCCTAATTTTTTTAATCTCACTTTA
* * * * * *
1113686 TCCTTTTTATAATTGAAGCTCATAA--TCTTTAATCTCATTTTT
1 TAC-ATTTATAATTG-AGCTCCTAATTTTTTTAATCTCACTTTA
* * * *
1113728 TATC-TTTATAATTGAGGCCCCTAA-TTTTTCAATCCCACTTTT
1 TA-CATTTATAATTGA-GCTCCTAATTTTTTTAATCTCACTTTA
** * * * * * *
1113770 TAC-TTATATTGTTTAGGC-CTTAACTTTTTTCAATCCCATTTTTT
1 TACATT-TATAATTGA-GCTCCTAA-TTTTTTTAATCTCA-CTTTA
* * * * *
1113814 TA-ATTTATAATTTATGATCCTAAGTTTTTCAATCTCACCTTA
1 TACATTTATAATTGA-GCTCCTAATTTTTTTAATCTCACTTTA
* * ** * **
1113856 TACCTATATAATTGAATTCCTAA-TTTTTTAATATCGTTTTA
1 TACATTTATAATTGAGCTCCTAATTTTTTTAATCTCACTTTA
*
1113897 TATC-TTTATAATTGAGTCTCCTATTTTTTTT
1 TA-CATTTATAATTGAG-CTCCTAATTTTTTT
1113928 TTAATAAATA
Statistics
Matches: 219, Mismatches: 49, Indels: 32
0.73 0.16 0.11
Matches are distributed among these distances:
40 1 0.00
41 48 0.22
42 75 0.34
43 74 0.34
44 21 0.10
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.50
Consensus pattern (42 bp):
TACATTTATAATTGAGCTCCTAATTTTTTTAATCTCACTTTA
Found at i:1115580 original size:36 final size:36
Alignment explanation
Indices: 1115516--1115657 Score: 241
Period size: 36 Copynumber: 4.0 Consensus size: 36
1115506 TTTGTTCTAG
* *
1115516 TTGAATTGGAAGTG-CGATGCTTCTTTCCGTTCGAT
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
1115551 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
*
1115587 TTGAATCGGAAGTGACGATGCTTCCTTCCGTTCGAT
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
*
1115623 TTAAATCGGAAGTGCCGATGCTTCCTTCCGTTCGA
1 TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGA
1115658 CTAGAAACGC
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
35 13 0.13
36 88 0.87
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.35
Consensus pattern (36 bp):
TTGAATCGGAAGTGCCGATGCTTCCTTCCGTTCGAT
Found at i:1121405 original size:24 final size:24
Alignment explanation
Indices: 1121371--1121418 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1121361 ATCATATTTA
* *
1121371 ACGGCCTCGACCACGTCCACGTCC
1 ACGGCCACGACCACGACCACGTCC
*
1121395 ACGGCCACGACCCCGACCACGTCC
1 ACGGCCACGACCACGACCACGTCC
1121419 CAAAGGCCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.52, G:0.21, T:0.08
Consensus pattern (24 bp):
ACGGCCACGACCACGACCACGTCC
Found at i:1128994 original size:16 final size:17
Alignment explanation
Indices: 1128973--1129006 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1128963 TTTTATTATT
*
1128973 ATTTAATATAAA-AATA
1 ATTTAAAATAAATAATA
1128989 ATTTAAAATAAATAATA
1 ATTTAAAATAAATAATA
1129006 A
1 A
1129007 AATATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTTAAAATAAATAATA
Found at i:1134797 original size:2 final size:2
Alignment explanation
Indices: 1134790--1134820 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1134780 ATTGGCAATT
1134790 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1134821 TCACAGGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1136301 original size:13 final size:12
Alignment explanation
Indices: 1136277--1136310 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
1136267 AAGGGAAAAA
1136277 GAAGAAAAAGTT
1 GAAGAAAAAGTT
1136289 GAAGAAGAAAGTT
1 GAAGAA-AAAGTT
1136302 GAGAGAAAA
1 GA-AGAAAA
1136311 TAGGGAGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.30
13 10 0.50
14 4 0.20
ACGTcount: A:0.59, C:0.00, G:0.29, T:0.12
Consensus pattern (12 bp):
GAAGAAAAAGTT
Found at i:1155941 original size:18 final size:19
Alignment explanation
Indices: 1155903--1155941 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
1155893 ATTAAAGTTG
* *
1155903 TAAAATAATTATTTAATTT
1 TAAAAAAATAATTTAATTT
1155922 TAAAAAAATAATTT-ATTT
1 TAAAAAAATAATTTAATTT
1155940 TA
1 TA
1155942 CTATAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TAAAAAAATAATTTAATTT
Found at i:1155948 original size:23 final size:22
Alignment explanation
Indices: 1155904--1155948 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
1155894 TTAAAGTTGT
* *
1155904 AAAATAATTATTTAATTTTAAA
1 AAAATAATTATTTAACTATAAA
*
1155926 AAAATAATTTATTTTACTATAAA
1 AAAATAA-TTATTTAACTATAAA
1155949 TAAACTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAATAATTATTTAACTATAAA
Found at i:1158421 original size:2 final size:2
Alignment explanation
Indices: 1158416--1158444 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1158406 TTTTTTACTT
1158416 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1158445 GGTCATTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1161564 original size:46 final size:47
Alignment explanation
Indices: 1161490--1161600 Score: 197
Period size: 46 Copynumber: 2.4 Consensus size: 47
1161480 GAAGATTGCT
* *
1161490 TGAAGATGCCGAAAAATCGATAAATCCTGAAGTCTTCCTGGTTGGCC
1 TGAAGACGCCGAGAAATCGATAAATCCTGAAGTCTTCCTGGTTGGCC
1161537 TGAA-ACGCCGAGAAATCGATAAATCCTGAAGTCTTCCTGGTTGGCC
1 TGAAGACGCCGAGAAATCGATAAATCCTGAAGTCTTCCTGGTTGGCC
1161583 TGAAGACGCCGAGAAATC
1 TGAAGACGCCGAGAAATC
1161601 TTGGAGTCTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
46 44 0.72
47 17 0.28
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.23
Consensus pattern (47 bp):
TGAAGACGCCGAGAAATCGATAAATCCTGAAGTCTTCCTGGTTGGCC
Found at i:1163707 original size:23 final size:23
Alignment explanation
Indices: 1163675--1163718 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
1163665 AAACATTAAT
*
1163675 TGAACACTAAATGAATATGTTTG
1 TGAACACTAAATGAAAATGTTTG
*
1163698 TGAACGCTAAATGAAAATGTT
1 TGAACACTAAATGAAAATGTT
1163719 CATGAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (23 bp):
TGAACACTAAATGAAAATGTTTG
Found at i:1163724 original size:23 final size:23
Alignment explanation
Indices: 1163675--1163724 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
1163665 AAACATTAAT
* **
1163675 TGAACACTAAATGAATATGTTTG
1 TGAACACTAAATGAAAATGTTCA
*
1163698 TGAACGCTAAATGAAAATGTTCA
1 TGAACACTAAATGAAAATGTTCA
1163721 TGAA
1 TGAA
1163725 TATATGAATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.30
Consensus pattern (23 bp):
TGAACACTAAATGAAAATGTTCA
Found at i:1163833 original size:30 final size:30
Alignment explanation
Indices: 1163797--1163899 Score: 107
Period size: 30 Copynumber: 3.3 Consensus size: 30
1163787 GTTCATGAAC
* *
1163797 AATAAATAAACGAACATGAATACCTTCAAA
1 AATAAATAAACGAACATGAACATCTTCAAA
* * * *
1163827 AATAAATAAATGAATACGAACATGTTCATGAA
1 AATAAATAAACGAACATGAACATCTTCA--AA
* *
1163859 CAATAAATAAACAAACATAAACATCTTCAAA
1 -AATAAATAAACGAACATGAACATCTTCAAA
1163890 AATAAATAAA
1 AATAAATAAA
1163900 TAAATAAATA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
30 32 0.55
31 2 0.03
32 2 0.03
33 22 0.38
ACGTcount: A:0.59, C:0.14, G:0.06, T:0.21
Consensus pattern (30 bp):
AATAAATAAACGAACATGAACATCTTCAAA
Found at i:1163917 original size:67 final size:63
Alignment explanation
Indices: 1163780--1163905 Score: 207
Period size: 63 Copynumber: 2.0 Consensus size: 63
1163770 GAGCATTAAG
* * * *
1163780 CGAACATGTTCATGAACAATAAATAAACGAACATGAATACCTTCAAAAATAAATAAATGAATA
1 CGAACATGTTCATGAACAATAAATAAACAAACATAAACACCTTCAAAAATAAATAAATAAATA
*
1163843 CGAACATGTTCATGAACAATAAATAAACAAACATAAACATCTTCAAAAATAAATAAATAAATA
1 CGAACATGTTCATGAACAATAAATAAACAAACATAAACACCTTCAAAAATAAATAAATAAATA
1163906 AATACGAACA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.56, C:0.14, G:0.07, T:0.22
Consensus pattern (63 bp):
CGAACATGTTCATGAACAATAAATAAACAAACATAAACACCTTCAAAAATAAATAAATAAATA
Found at i:1165382 original size:12 final size:12
Alignment explanation
Indices: 1165367--1165395 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
1165357 CTTTACTCAC
1165367 CTCCGATGGCCG
1 CTCCGATGGCCG
1165379 CTCCGATGGCCG
1 CTCCGATGGCCG
1165391 CTCCG
1 CTCCG
1165396 GTGCCGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.45, G:0.31, T:0.17
Consensus pattern (12 bp):
CTCCGATGGCCG
Found at i:1171583 original size:34 final size:34
Alignment explanation
Indices: 1171545--1171610 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
1171535 GTTCTAAAAT
*
1171545 CTTTTAATTATTTGACAATAAACGCTTAAATAAA
1 CTTTTAATTATTTGACAATAAACGCTCAAATAAA
*
1171579 CTTTTAATTATTTGATAATAAACGCTCAAATA
1 CTTTTAATTATTTGACAATAAACGCTCAAATA
1171611 CTTTAACAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.39
Consensus pattern (34 bp):
CTTTTAATTATTTGACAATAAACGCTCAAATAAA
Found at i:1174424 original size:21 final size:21
Alignment explanation
Indices: 1174391--1174434 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
1174381 AATAAATTGC
* *
1174391 AAGTTAACCAATTAATGATAA
1 AAGTTAACAAATTAATGAAAA
* *
1174412 AAGTTATCAAATTATTGAAAA
1 AAGTTAACAAATTAATGAAAA
1174433 AA
1 AA
1174435 TCAAATAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.07, G:0.09, T:0.30
Consensus pattern (21 bp):
AAGTTAACAAATTAATGAAAA
Found at i:1177901 original size:29 final size:29
Alignment explanation
Indices: 1177853--1177960 Score: 77
Period size: 23 Copynumber: 3.8 Consensus size: 29
1177843 TTTAAAATAT
*
1177853 ATATATTTTATTTTTTTATTCAACTTATTAA
1 ATATATTTTA--TTCTTATTCAACTTATTAA
*
1177884 ATATATTTTATTCTTA-T----TTA-GAA
1 ATATATTTTATTCTTATTCAACTTATTAA
*
1177907 AAATATTTTATTCTTATCTCAACTT-TTAAA
1 ATATATTTTATTCTTAT-TCAACTTATT-AA
* * *
1177937 ATATTTTTTATTTTTTTTCAACTT
1 ATATATTTTATTCTTATTCAACTT
1177961 TTGAAAAGCG
Statistics
Matches: 61, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
23 17 0.28
24 3 0.05
25 1 0.02
28 1 0.02
29 14 0.23
30 15 0.25
31 10 0.16
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.59
Consensus pattern (29 bp):
ATATATTTTATTCTTATTCAACTTATTAA
Found at i:1178773 original size:31 final size:31
Alignment explanation
Indices: 1178702--1178778 Score: 79
Period size: 33 Copynumber: 2.5 Consensus size: 31
1178692 AAATTGAGGG
* *
1178702 TTTTTATAAATAAATTATTTTTTTTAATTTT
1 TTTTTAAAAATAAATTATTTTTATTAATTTT
1178733 TTTAATTAAAAATAATATT-TTTATTATTAA-TTT
1 TTT--TTAAAAATAA-ATTATTT-TTATTAATTTT
1178766 TTTTT-AAAATAAA
1 TTTTTAAAAATAAA
1178779 CATAGACACC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
29 1 0.03
30 7 0.17
31 5 0.12
33 18 0.45
34 9 0.22
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (31 bp):
TTTTTAAAAATAAATTATTTTTATTAATTTT
Found at i:1183819 original size:25 final size:24
Alignment explanation
Indices: 1183791--1183856 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 24
1183781 TAATCCTTAA
*
1183791 ATTGAATTTTTAATAATTTAATTTT
1 ATTGAATTTTTAATAATTTAA-TGT
*
1183816 ATTGTATTTTT-AT-ATTTAATGT
1 ATTGAATTTTTAATAATTTAATGT
*
1183838 ATTGAATATCTTAATAATT
1 ATTGAAT-TTTTAATAATT
1183857 GTTTATATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
22 8 0.24
23 9 0.26
24 4 0.12
25 13 0.38
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.58
Consensus pattern (24 bp):
ATTGAATTTTTAATAATTTAATGT
Found at i:1185286 original size:2 final size:2
Alignment explanation
Indices: 1185279--1185303 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1185269 CAGATTAATA
1185279 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1185304 ATTTTGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1194523 original size:23 final size:23
Alignment explanation
Indices: 1194497--1194547 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
1194487 TTAAACGAAT
1194497 ATGTTCGCGAATATAAAATGAAC
1 ATGTTCGCGAATATAAAATGAAC
* **
1194520 ATGTTCGCGAGTATTCAATGAAC
1 ATGTTCGCGAATATAAAATGAAC
*
1194543 TTGTT
1 ATGTT
1194548 AACCTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (23 bp):
ATGTTCGCGAATATAAAATGAAC
Found at i:1197396 original size:15 final size:15
Alignment explanation
Indices: 1197376--1197408 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
1197366 ATTAGAAGGA
1197376 TAAAAAAATATTTTT
1 TAAAAAAATATTTTT
1197391 TAAAAAAATATTTTT
1 TAAAAAAATATTTTT
1197406 TAA
1 TAA
1197409 TTATCTATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TAAAAAAATATTTTT
Found at i:1197875 original size:26 final size:26
Alignment explanation
Indices: 1197827--1197876 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
1197817 TAATTAAAAC
* *
1197827 AGAAATTAAAATTTAATTTATAATTA
1 AGAAAATAAAATTTAATTAATAATTA
1197853 AGAAAATAAAATTTTAA-TAATAAT
1 AGAAAATAAAA-TTTAATTAATAAT
1197877 AAATATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (26 bp):
AGAAAATAAAATTTAATTAATAATTA
Found at i:1199489 original size:21 final size:21
Alignment explanation
Indices: 1199458--1199555 Score: 96
Period size: 21 Copynumber: 4.9 Consensus size: 21
1199448 CGATTTACAT
*
1199458 ATTCGCATTGCGATAGTCCAA
1 ATTCGCGTTGCGATAGTCCAA
* *
1199479 GTTCGCGTTGCGATAGTCGAA
1 ATTCGCGTTGCGATAGTCCAA
* **
1199500 GTTCGCGTTGCGATTTTCCAA
1 ATTCGCGTTGCGATAGTCCAA
**
1199521 ATT--CGTTGCGATTTTCCAA
1 ATTCGCGTTGCGATAGTCCAA
1199540 ATT--CGTTGCGATAGTC
1 ATTCGCGTTGCGATAGTC
1199556 GAAGACACGT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
19 30 0.44
21 38 0.56
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.35
Consensus pattern (21 bp):
ATTCGCGTTGCGATAGTCCAA
Found at i:1199529 original size:19 final size:19
Alignment explanation
Indices: 1199505--1199551 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
1199495 TCGAAGTTCG
1199505 CGTTGCGATTTTCCAAATT
1 CGTTGCGATTTTCCAAATT
1199524 CGTTGCGATTTTCCAAATT
1 CGTTGCGATTTTCCAAATT
1199543 CGTTGCGAT
1 CGTTGCGAT
1199552 AGTCGAAGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40
Consensus pattern (19 bp):
CGTTGCGATTTTCCAAATT
Found at i:1204861 original size:25 final size:25
Alignment explanation
Indices: 1204833--1204887 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
1204823 CATTTCCTCT
1204833 GTGTTATCATTGACCGTGATTTTAG
1 GTGTTATCATTGACCGTGATTTTAG
1204858 GTGTTATCATTGACCGTGATTTTAG
1 GTGTTATCATTGACCGTGATTTTAG
1204883 GTGTT
1 GTGTT
1204888 CTCAGATGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.18, C:0.11, G:0.25, T:0.45
Consensus pattern (25 bp):
GTGTTATCATTGACCGTGATTTTAG
Found at i:1208094 original size:23 final size:22
Alignment explanation
Indices: 1208058--1208107 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
1208048 GATAATTTAA
*
1208058 AAATAAAATTATTTCAAATAAAT
1 AAATAAAATGATTTCAAA-AAAT
* * *
1208081 AAATAAGATGATTTTACAAAAT
1 AAATAAAATGATTTCAAAAAAT
1208103 AAATA
1 AAATA
1208108 TTTTAAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (22 bp):
AAATAAAATGATTTCAAAAAAT
Found at i:1209476 original size:45 final size:47
Alignment explanation
Indices: 1209407--1209549 Score: 148
Period size: 56 Copynumber: 2.9 Consensus size: 47
1209397 TGAAATCGAA
* * *
1209407 TATATTTATCAGTTGTTGTC-ATTAATAAGCATAAAAATAGGG-TC-G
1 TATATCTATCAGTTGTT-ACAATTAAGAAGCATAAAAATAGGGATCAG
1209452 TATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATAGGGGCCCCGAAATCGAG
1 TATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATA--GG----G--ATC-AG
1209508 TATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATAGGG
1 TATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATAGGG
1209550 GTCCCGAAAT
Statistics
Matches: 83, Mismatches: 3, Indels: 19
0.79 0.03 0.18
Matches are distributed among these distances:
44 1 0.01
45 34 0.41
47 2 0.02
50 1 0.01
51 1 0.01
54 4 0.05
56 40 0.48
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (47 bp):
TATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATAGGGATCAG
Found at i:1209537 original size:56 final size:56
Alignment explanation
Indices: 1209451--1209580 Score: 251
Period size: 56 Copynumber: 2.3 Consensus size: 56
1209441 AAATAGGGTC
1209451 GTATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATAGGGGCCCCGAAATCGA
1 GTATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATAGGGGCCCCGAAATCGA
*
1209507 GTATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATAGGGGTCCCGAAATCGA
1 GTATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATAGGGGCCCCGAAATCGA
1209563 GTATATCTATCAGTTGTT
1 GTATATCTATCAGTTGTT
1209581 GCCATTATAA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (56 bp):
GTATATCTATCAGTTGTTACAATTAAGAAGCATAAAAATAGGGGCCCCGAAATCGA
Found at i:1217148 original size:27 final size:30
Alignment explanation
Indices: 1217109--1217176 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
1217099 AAACACTCAA
1217109 AACATTATTATTTTATAT-A-TTTAATATT
1 AACATTATTATTTTATATCATTTTAATATT
* *
1217137 AACA-TATTATTTTGTATCATTTTAATA-A
1 AACATTATTATTTTATATCATTTTAATATT
*
1217165 AATATTATTATT
1 AACATTATTATT
1217177 AAATTATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 12 0.35
28 8 0.24
29 14 0.41
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.54
Consensus pattern (30 bp):
AACATTATTATTTTATATCATTTTAATATT
Found at i:1217242 original size:28 final size:28
Alignment explanation
Indices: 1217168--1217242 Score: 73
Period size: 30 Copynumber: 2.6 Consensus size: 28
1217158 TTAATAAAAT
* *
1217168 ATTAT-TATTAAATTATATTTATTGATA
1 ATTATATAATAAATTATTTTTATTGATA
* *
1217195 ATTTTATAATATAATATATTTTTATT-TTA
1 ATTATATAATA-AAT-TATTTTTATTGATA
1217224 ATATATATAATAAATTATT
1 AT-TATATAATAAATTATT
1217243 AATAAAACTA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 4 0.10
28 8 0.21
29 10 0.26
30 17 0.44
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (28 bp):
ATTATATAATAAATTATTTTTATTGATA
Found at i:1217401 original size:28 final size:30
Alignment explanation
Indices: 1217370--1217429 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 30
1217360 ATAATATTTC
*
1217370 AATAAGAAATTAATAT-ATTAT-TATTTTT
1 AATAACAAATTAATATAATTATATATTTTT
* *
1217398 AATAACTATTTAATATAATTATAATATTTTT
1 AATAACAAATTAATATAATTAT-ATATTTTT
1217429 A
1 A
1217430 TCTTAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 13 0.50
29 5 0.19
31 8 0.31
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (30 bp):
AATAACAAATTAATATAATTATATATTTTT
Found at i:1217488 original size:14 final size:14
Alignment explanation
Indices: 1217432--1217499 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 14
1217422 TATTTTTATC
*
1217432 TTAATAA-AATATA
1 TTAATAATAATATT
* *
1217445 ATAATATTAATATT
1 TTAATAATAATATT
* * *
1217459 TTTAT-TTAAAATT
1 TTAATAATAATATT
1217472 TTAGAT-ATAATATT
1 TTA-ATAATAATATT
1217486 TTAATAATAATATT
1 TTAATAATAATATT
1217500 AGATAAATTA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
13 16 0.37
14 27 0.63
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (14 bp):
TTAATAATAATATT
Found at i:1217511 original size:47 final size:48
Alignment explanation
Indices: 1217442--1217535 Score: 111
Period size: 48 Copynumber: 2.0 Consensus size: 48
1217432 TTAATAAAAT
** * * *
1217442 ATAATAATATTAATATTTTTATT-TAAAATTTTAGATATAATATTTTA
1 ATAATAATATTAATATAATTATTCTAAAATTTGAAAAATAATATTTTA
*
1217489 ATAATAATATTAGATA-AATTATTCTAATATTTGAAAAATAATATTTT
1 ATAATAATATTA-ATATAATTATTCTAAAATTTGAAAAATAATATTTT
1217536 TATTTTGTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
47 17 0.44
48 22 0.56
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (48 bp):
ATAATAATATTAATATAATTATTCTAAAATTTGAAAAATAATATTTTA
Done.