genome.fa.s7941.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007941.1 Hibiscus syriacus cultivar Beakdansim tig00110357_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140088

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521--893	91	4.1	92	96	3	673	22	12	18	46	1.82
937--1065	19	7.3	19	75	17	125	45	28	17	8	1.77
973--1065	33	2.8	32	91	4	150	46	27	18	7	1.76
937--1065	52	2.5	52	74	14	140	45	28	17	8	1.77
1061--1194	19	7.6	19	73	18	119	11	19	23	45	1.82
1083--1139	14	3.7	14	77	20	60	10	21	22	45	1.82
1066--1194	33	3.8	33	87	5	168	10	18	24	46	1.81
3074--3109	14	2.6	14	95	0	63	33	0	22	44	1.53
3216--3298	19	4.6	19	80	17	113	43	18	24	14	1.87
3327--3598	19	15.4	19	80	16	336	13	21	18	46	1.83
3305--3570	52	5.0	52	91	6	437	14	22	16	45	1.84
3305--3598	33	8.5	33	74	21	155	14	21	18	45	1.84
5874--5898	12	2.1	12	100	0	50	0	28	0	72	0.86
6072--6118	24	2.0	24	87	8	69	38	21	14	25	1.92
6794--7183	20	19.5	20	84	5	457	20	18	25	35	1.95
8208--8234	14	1.9	14	100	0	54	29	0	3	66	1.09
8222--8265	23	1.9	23	95	0	79	31	0	2	65	1.05
8226--8276	23	2.2	23	82	6	59	31	1	3	62	1.24
18106--18199	41	2.3	41	87	5	127	39	23	20	17	1.92
18134--18199	20	3.2	20	74	4	78	37	24	21	16	1.93
18207--18279	20	3.6	20	75	3	83	13	21	26	38	1.91
18227--18291	21	3.1	21	73	4	69	23	18	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18200--18332	41	3.4	40	82	15	188	21	18	23	36	1.95
18259--18325	34	2.0	34	93	0	116	23	17	17	40	1.91
18326--18415	41	2.2	41	91	0	144	20	18	22	38	1.93
19009--19058	6	8.3	6	100	0	100	0	18	48	34	1.48
19176--19272	20	4.8	20	80	2	113	41	23	20	14	1.89
19664--19716	25	2.1	25	96	0	97	41	13	20	24	1.88
20379--20431	21	2.5	21	84	0	70	15	33	32	18	1.92
23248--23308	21	3.2	21	63	29	55	31	1	21	45	1.61
23243--23391	36	4.2	36	87	3	207	31	2	18	47	1.62
23254--23391	71	2.0	70	89	4	215	31	2	17	48	1.62
24588--24619	15	2.1	15	94	0	55	53	15	25	6	1.65
27569--27629	21	3.2	21	65	29	64	31	4	21	42	1.74
27562--27667	35	3.0	35	95	2	187	29	5	18	46	1.72
29006--29036	16	1.9	16	93	0	53	19	12	19	48	1.81
29968--30061	31	3.0	31	92	3	145	37	23	19	20	1.94
38680--38712	6	5.5	6	96	0	57	21	45	0	33	1.52
40403--40442	21	2.0	20	85	5	53	50	2	0	47	1.14
40412--40446	18	2.0	18	88	5	54	54	2	0	42	1.15
49124--49155	2	16.0	2	100	0	64	50	0	0	50	1.00
50238--50602	184	2.0	181	97	2	696	34	16	9	39	1.81
51154--51272	50	2.4	50	81	1	139	31	10	12	46	1.75
51928--51967	16	2.5	17	84	11	50	47	10	0	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62584--62623	21	1.9	21	89	0	62	10	25	40	25	1.86
66457--66496	21	1.9	21	85	10	55	35	10	2	52	1.48
72816--72962	77	1.9	78	85	4	208	38	12	9	38	1.76
77505--77567	22	3.0	21	84	9	83	52	0	1	46	1.10
77512--77567	21	2.7	20	86	8	76	55	0	0	44	0.99
81721--81752	10	3.2	10	100	0	64	71	0	0	28	0.86
83722--83766	20	2.2	20	81	18	58	44	4	13	37	1.64
84560--84662	36	2.9	36	88	0	161	29	15	12	42	1.84
92349--92390	18	2.3	18	100	0	84	35	14	11	38	1.83
93643--93699	27	2.1	27	100	0	114	24	26	14	35	1.93
102085--102530	221	2.0	224	94	4	798	23	19	13	44	1.85
107577--107623	22	2.1	22	92	0	76	40	4	29	25	1.75
107504--107678	90	2.0	85	93	5	296	44	11	17	26	1.83
109074--109144	35	2.0	35	88	0	106	56	9	7	26	1.57
110743--110776	14	2.5	13	85	4	50	2	17	0	79	0.86
112399--112436	9	3.9	10	86	13	53	21	26	23	28	1.99
112400--112466	19	3.5	20	84	11	72	17	25	28	28	1.98
112465--112517	5	9.8	5	76	15	52	18	50	22	7	1.72
112464--112524	17	3.3	17	79	20	77	18	47	22	11	1.80
112465--112531	22	3.0	22	93	4	107	17	46	23	11	1.82
112514--112544	7	4.4	7	100	0	62	16	29	29	25	1.96
119702--119740	21	1.9	21	89	5	62	17	25	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119703--119801	10	10.3	9	75	12	72	16	26	27	30	1.96
119702--119801	29	3.4	30	81	9	109	17	26	27	30	1.97
119702--119795	19	4.8	19	75	15	77	17	24	27	30	1.97
119725--119799	19	3.9	19	80	13	82	14	24	30	30	1.95
119798--119855	5	10.8	5	78	14	62	18	51	22	6	1.70
119798--119862	22	3.0	22	100	0	130	18	49	23	9	1.76
119852--119882	7	4.4	7	95	0	53	19	29	25	25	1.99
129460--129508	22	2.3	21	86	6	71	28	22	14	34	1.93
129738--129821	22	3.9	22	88	1	125	26	13	28	32	1.93
130151--130210	25	2.4	25	86	2	86	35	10	0	55	1.34
135191--135289	24	4.0	25	77	3	96	42	18	14	25	1.87
136854--136885	13	2.5	13	95	5	57	50	18	0	31	1.48
139204--139310	17	6.6	15	74	20	67	0	38	11	50	1.38
139201--139344	35	4.2	35	82	10	165	0	35	11	52	1.38
139145--139352	49	4.1	50	83	9	228	0	37	11	50	1.44
139320--139372	14	3.7	14	82	5	70	0	32	11	56	1.35
139162--139332	18	9.9	18	80	8	104	1	36	11	50	1.46
139201--139381	35	5.6	33	79	14	164	0	36	12	50	1.41

Tables:   1

The End!