genome.fa.s7942.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007942.1 Hibiscus syriacus cultivar Beakdansim tig00110361_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198765

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7134--7182	22	2.3	21	86	6	71	28	22	14	34	1.93
7412--7495	22	3.9	22	88	1	125	26	13	28	32	1.93
7789--7827	17	2.4	16	83	8	51	30	2	2	64	1.21
7820--7882	25	2.6	24	82	5	81	33	9	0	57	1.31
12874--12972	24	4.0	25	77	3	96	42	18	14	25	1.87
14554--14588	13	2.6	14	91	8	56	45	22	0	31	1.53
16928--17094	18	9.4	18	88	3	205	0	36	12	50	1.40
16880--17094	36	6.1	36	83	3	217	0	37	10	51	1.42
16878--17094	54	4.1	54	86	3	266	0	37	10	51	1.43
17060--17114	15	3.7	15	87	0	83	0	30	10	58	1.33
16895--17070	18	9.8	18	84	8	123	1	36	10	51	1.43
17066--17123	30	1.9	30	92	0	98	0	34	13	51	1.42
19111--19186	31	2.5	30	80	6	89	50	2	1	46	1.24
21249--21308	29	2.1	28	90	6	95	20	13	20	46	1.83
30931--30977	24	2.0	24	91	0	76	59	4	8	27	1.45
37963--37996	15	2.2	16	89	5	52	26	14	14	44	1.84
38401--38445	16	2.8	16	93	0	81	8	13	22	55	1.65
41158--41194	17	2.1	18	90	5	58	45	0	0	54	1.00
43145--43171	12	2.2	12	100	0	54	14	0	7	77	0.97
43159--43209	22	2.4	21	80	12	59	29	1	7	60	1.36
52677--53050	183	2.0	183	93	2	635	45	8	3	42	1.50
54511--54545	17	2.1	17	88	0	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54501--54547	24	1.9	25	91	4	78	44	0	0	55	0.99
54501--54547	25	1.9	24	87	12	69	44	0	0	55	0.99
54647--54730	33	2.6	31	81	11	80	54	1	4	39	1.29
54650--54730	31	2.5	32	80	9	85	54	1	4	39	1.30
54726--54810	27	3.1	27	68	18	68	51	0	4	43	1.22
54729--54795	27	2.5	28	79	15	72	53	0	2	43	1.16
70325--70381	29	2.0	29	82	6	71	47	7	3	42	1.47
77083--77123	21	1.9	21	85	5	55	51	14	7	26	1.69
77312--77360	24	2.1	23	88	3	71	55	6	10	28	1.57
79527--79752	102	2.3	99	85	5	301	28	16	22	33	1.95
86739--86790	2	26.0	2	100	0	104	50	0	0	50	1.00
87767--87840	20	3.6	21	74	18	75	47	1	1	50	1.18
87744--87851	21	5.3	20	70	17	73	49	0	0	49	1.13
87743--87843	40	2.4	41	83	9	116	46	0	0	51	1.14
87815--87858	21	2.1	21	83	8	54	59	0	0	40	0.98
89957--90000	10	4.3	10	80	5	52	54	2	0	43	1.12
89957--89998	21	2.0	21	95	0	75	52	2	0	45	1.13
93409--93455	23	2.0	23	84	8	60	17	14	14	53	1.74
101225--101296	26	3.0	24	68	27	62	62	4	6	26	1.39
101412--101444	15	2.2	15	100	0	66	18	33	15	33	1.92
101413--101447	18	1.9	18	94	0	61	17	34	14	34	1.90
102977--103198	111	2.0	111	94	1	392	45	10	7	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103322--103362	10	4.1	10	84	12	57	39	0	29	31	1.57
104724--104807	23	3.7	23	88	3	116	28	26	26	19	1.98
105894--105947	22	2.5	22	75	6	56	40	20	1	37	1.63
109703--109734	5	6.8	5	86	13	50	34	0	0	65	0.93
109678--109756	39	2.0	39	81	13	92	37	1	2	58	1.20
109842--109893	26	2.0	27	85	11	72	30	0	5	63	1.18
119340--119512	94	1.9	87	82	10	213	40	8	10	41	1.69
120623--120669	21	2.2	21	78	14	53	46	6	4	42	1.48
125221--125378	64	2.5	64	84	6	203	26	16	26	30	1.97
125327--125376	19	2.7	19	85	14	70	26	16	34	24	1.95
131565--131604	21	1.9	21	85	10	55	35	10	2	52	1.48
133546--133708	65	2.5	64	82	3	202	27	15	26	30	1.96
133656--133706	19	2.7	19	82	8	61	27	15	33	23	1.95
136490--136521	3	10.3	3	93	6	55	65	0	34	0	0.93
158458--158872	205	2.0	204	93	2	706	30	7	4	57	1.48
159033--159070	13	2.9	14	88	11	55	18	5	0	76	0.97
170446--171030	105	5.6	105	99	0	1134	33	26	17	22	1.96
172617--172656	2	20.5	2	89	5	64	45	0	2	52	1.14
172875--172915	13	3.2	13	83	13	57	19	4	0	75	0.98
178760--178860	24	4.2	24	75	15	77	30	3	0	65	1.11
178750--178850	46	2.2	43	79	11	105	31	3	0	64	1.12
178795--178850	23	2.4	23	77	13	62	32	3	0	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179026--179136	36	3.2	36	74	19	137	41	6	7	45	1.57
178999--179100	36	3.3	30	69	22	86	39	7	7	45	1.62
178999--179141	66	2.2	63	95	3	250	39	7	7	44	1.62
179287--179366	33	2.3	34	81	14	85	52	3	2	41	1.33
179691--179740	26	1.9	26	87	0	73	48	0	2	50	1.12
185079--185108	14	2.1	14	93	0	51	50	6	0	43	1.28
185288--185320	17	1.9	17	88	11	50	57	18	12	12	1.64
186416--186491	11	6.6	11	70	8	53	27	22	23	26	1.99
186425--186492	23	2.9	23	78	4	82	29	23	22	25	1.99
187205--187297	21	4.5	21	78	4	100	39	18	24	17	1.91
187205--187297	41	2.3	41	100	0	186	39	18	24	17	1.91
187224--187358	41	3.3	41	82	6	132	37	21	21	19	1.94
187286--187417	20	6.7	20	81	6	117	31	25	18	24	1.97
187585--187627	21	2.0	22	90	4	70	18	46	16	18	1.84
187888--187946	20	3.0	20	85	5	66	15	18	23	42	1.88
188084--188128	22	2.1	22	87	4	65	20	6	17	55	1.64
189260--189304	18	2.5	18	88	0	72	26	44	15	13	1.83
189794--189838	20	2.3	19	80	3	54	40	20	22	17	1.92
189794--189852	19	3.1	19	82	2	64	40	20	22	16	1.91
189864--189921	14	3.9	14	79	16	71	8	17	25	48	1.75
189859--189937	32	2.4	33	95	2	142	10	18	24	46	1.80
189878--189995	20	6.4	19	77	11	95	13	20	24	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191988--192055	19	3.8	19	85	14	101	47	17	22	13	1.82
192074--192110	19	1.9	19	94	0	65	16	18	24	40	1.90
193150--193203	24	2.2	24	90	0	81	24	16	20	38	1.92
195658--195780	33	3.7	33	83	4	176	44	19	21	14	1.86
195658--195787	66	2.0	66	93	0	224	43	19	20	16	1.87
195780--195821	20	2.2	20	83	8	52	16	19	23	40	1.91
195961--195996	14	2.6	14	86	4	56	47	22	0	30	1.52

Tables:   1

The End!