genome.fa.s7945.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007945.1 Hibiscus syriacus cultivar Beakdansim tig00110367_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116619

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2794--2857	23	2.8	23	87	0	92	35	6	20	37	1.78
2794--2866	23	3.2	23	82	7	85	34	5	20	39	1.76
3221--3284	23	2.8	23	87	0	92	35	6	20	37	1.78
3221--3293	23	3.2	23	82	7	85	34	5	20	39	1.76
3645--3698	19	2.6	21	74	17	58	35	7	18	38	1.79
2697--4537	417	4.4	425	95	4	3341	39	8	13	38	1.75
4060--4118	23	2.6	23	88	0	91	35	6	20	37	1.79
4060--4127	23	3.0	23	82	8	84	33	5	20	39	1.77
2697--4537	840	2.2	843	95	4	3375	39	8	13	38	1.75
4484--4539	21	2.7	20	88	5	76	32	8	19	39	1.83
4743--4779	18	2.1	18	89	0	56	32	5	10	51	1.60
4735--4781	24	2.0	24	86	0	67	34	4	14	46	1.64
8708--8844	64	2.2	63	80	6	143	24	24	18	32	1.97
15465--15534	34	2.1	32	89	5	104	21	31	15	31	1.95
15817--15858	21	2.0	21	95	0	75	26	28	21	23	1.99
16057--16147	31	3.0	31	96	3	168	42	17	6	32	1.75
16306--16354	24	2.0	24	92	0	80	30	2	8	59	1.38
18337--18405	33	2.1	32	86	7	95	20	31	15	31	1.94
18683--18723	21	2.0	21	90	4	66	26	26	21	24	2.00
18831--18880	18	2.8	18	87	6	57	38	10	14	38	1.79
18852--18886	18	1.9	18	94	0	61	42	11	8	37	1.72
18851--18893	18	2.3	18	84	4	59	44	11	6	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18952--19041	31	3.0	31	95	4	159	42	17	6	33	1.76
19044--19377	168	2.0	166	98	1	650	43	20	9	26	1.82
21191--21242	24	2.2	24	100	0	104	42	3	7	46	1.51
22058--22142	35	2.4	36	76	13	102	43	23	1	31	1.61
32040--32106	23	2.8	23	77	11	73	35	2	0	61	1.12
33198--33237	17	2.5	15	88	8	53	52	2	0	45	1.14
33284--33325	16	2.6	16	88	0	66	42	11	7	38	1.69
33356--33417	14	4.7	14	75	15	51	45	6	1	46	1.38
33361--33540	11	14.6	12	69	18	77	48	8	1	41	1.40
33662--33705	23	2.0	23	86	4	63	45	9	11	34	1.72
33685--33726	16	2.6	16	88	0	66	42	11	7	38	1.69
33753--33933	13	14.7	11	69	21	78	45	9	2	41	1.52
33786--33893	14	8.1	14	73	15	86	44	12	2	40	1.56
33762--34015	52	5.0	51	75	15	166	47	10	2	39	1.50
33869--33914	21	2.2	20	82	17	58	52	8	0	39	1.33
33945--34016	35	2.0	37	91	5	121	52	9	0	37	1.34
33989--34083	24	4.2	23	72	18	67	50	7	2	40	1.42
37469--37528	17	3.4	17	84	13	84	46	10	0	43	1.37
37770--37796	4	6.8	4	100	0	54	51	22	0	25	1.48
38151--38256	44	2.3	48	85	6	148	50	10	0	37	1.43
38225--38284	27	2.2	28	96	3	113	56	13	0	30	1.37
38229--38293	27	2.4	27	85	12	98	53	13	0	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38503--38573	22	3.0	24	79	12	83	30	11	26	30	1.91
46088--46134	2	23.5	2	100	0	94	51	0	0	48	1.00
46911--46948	2	20.0	2	89	10	62	47	0	0	52	1.00
46911--46948	11	3.3	12	89	10	62	47	0	0	52	1.00
46912--46948	15	2.5	15	100	0	74	45	0	0	54	1.00
52814--54643	106	17.3	106	94	0	3073	34	24	18	23	1.96
63457--63576	27	4.4	27	93	0	204	29	19	16	35	1.94
65729--65773	21	2.1	21	87	0	63	31	28	24	15	1.96
67453--67769	151	2.1	149	92	2	528	27	16	21	34	1.94
70562--70606	21	2.1	21	87	0	63	31	28	24	15	1.96
72280--72583	149	2.0	149	96	0	554	27	15	21	34	1.94
72555--72606	23	2.3	23	83	6	72	25	21	25	28	1.99
74486--74578	27	3.4	27	95	0	168	27	19	16	36	1.93
74692--74722	14	2.2	14	100	0	62	38	22	12	25	1.90
78010--78039	15	2.0	15	93	0	51	46	16	6	30	1.73
82556--82585	15	2.0	15	93	0	51	46	16	6	30	1.73
89249--89304	24	2.3	24	96	0	103	30	17	14	37	1.90
90478--90517	21	1.9	21	85	10	55	30	12	20	37	1.89
92008--92076	23	3.0	22	79	10	75	15	18	17	47	1.82
97883--97924	20	2.1	20	86	8	59	30	28	9	30	1.89
98022--98180	60	2.7	58	74	11	135	32	21	10	35	1.88
97970--98159	20	9.4	21	80	9	148	32	22	11	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98031--98178	20	7.5	20	72	12	101	30	22	11	35	1.89
99089--99141	23	2.2	24	90	3	81	20	18	20	39	1.92
101589--101659	28	2.5	29	84	6	92	32	15	22	29	1.95
103114--103203	21	4.3	20	75	2	72	22	18	34	24	1.96
103500--103597	21	4.8	21	67	16	71	35	27	14	22	1.93
103499--103638	60	2.3	63	91	3	223	35	29	12	22	1.92
103551--103639	21	4.3	20	70	13	65	38	29	11	21	1.88
103499--103680	63	3.0	61	84	5	190	33	30	13	22	1.92
105408--105445	20	1.9	20	88	0	58	18	13	21	47	1.82
105764--105814	22	2.3	22	82	0	66	17	19	43	19	1.89
105918--105955	20	2.0	20	84	5	51	44	13	15	26	1.83
105979--106019	20	2.0	20	90	0	64	24	14	21	39	1.91
106229--106274	21	2.1	22	96	4	85	54	0	8	36	1.32
115698--115797	35	2.7	36	80	13	114	19	18	19	44	1.88
115967--116025	21	2.7	21	84	10	66	50	0	0	49	1.00
116006--116039	18	1.9	17	88	5	50	41	0	0	58	0.98
116059--116144	29	3.0	27	77	14	75	45	1	2	51	1.21
116069--116144	29	2.6	29	82	10	84	43	1	1	53	1.17
116374--116454	14	5.6	15	81	8	96	34	20	7	37	1.81
116342--116391	20	2.5	20	100	0	100	34	16	10	40	1.81
116374--116453	29	2.8	30	84	9	112	35	21	7	36	1.82
116374--116458	43	2.0	44	88	6	129	32	21	7	38	1.80

Tables:   1

The End!