genome.fa.s7946.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007946.1 Hibiscus syriacus cultivar Beakdansim tig00110368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99679

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3290--3319	15	2.0	15	93	0	51	46	16	6	30	1.73
9952--10007	24	2.3	24	96	0	103	30	17	14	37	1.90
11178--11217	21	1.9	21	85	10	55	30	12	20	37	1.89
12716--12784	23	3.0	22	79	10	75	15	18	17	47	1.82
18620--18661	20	2.1	20	86	8	59	30	28	9	30	1.89
18759--18917	60	2.7	58	74	11	135	32	21	10	35	1.88
18707--18896	20	9.4	21	80	9	148	32	22	11	33	1.90
18768--18915	20	7.5	20	72	12	101	30	22	11	35	1.89
19054--19091	16	2.5	15	84	12	51	28	5	0	65	1.14
19845--19898	24	2.2	24	93	0	90	20	18	20	40	1.91
22136--22176	12	3.4	12	86	0	55	56	24	2	17	1.53
22135--22169	6	5.8	6	86	0	52	60	20	2	17	1.49
22389--22461	29	2.5	29	90	0	110	32	15	21	30	1.94
23952--24041	21	4.3	20	75	2	72	22	18	34	24	1.96
24345--24442	21	4.8	21	67	12	69	34	28	14	22	1.93
24344--24483	60	2.3	63	91	3	223	34	30	12	22	1.92
24403--24484	21	4.0	20	70	10	58	36	30	10	21	1.88
24344--24525	60	3.0	61	84	5	190	32	31	13	22	1.92
24517--24566	21	2.4	21	86	0	73	34	34	14	18	1.90
24681--24779	42	2.4	42	91	0	153	19	19	34	27	1.95
26295--26332	20	1.9	20	88	0	58	18	13	21	47	1.82
26647--26697	22	2.3	22	79	0	57	17	19	41	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26801--26838	20	2.0	20	84	5	51	44	13	15	26	1.83
26862--26902	20	2.0	20	90	0	64	24	14	21	39	1.91
34815--34849	13	2.8	12	83	8	52	17	0	2	80	0.84
36691--36802	42	2.7	42	94	0	188	16	16	18	47	1.83
37003--37048	10	4.5	10	78	21	51	41	0	0	58	0.98
36974--37036	23	2.6	25	78	19	71	50	0	0	49	1.00
36991--37052	21	3.0	23	84	13	73	45	0	0	54	0.99
37071--37166	30	3.2	31	81	11	94	45	1	2	51	1.20
37365--37414	20	2.5	20	100	0	100	34	16	10	40	1.81
37397--37478	15	5.5	15	86	2	112	35	20	7	36	1.81
37397--37478	30	2.8	30	92	1	130	35	20	7	36	1.81
37397--37484	45	2.0	44	90	2	140	32	21	6	38	1.80
50076--50113	14	2.7	15	76	16	53	78	5	2	13	1.02
50054--50107	22	2.5	21	84	6	63	74	7	7	11	1.23
51270--51302	17	1.9	17	93	0	57	75	0	3	21	0.93
51229--51296	13	5.2	14	74	11	56	70	1	7	20	1.19
51321--51624	36	8.1	35	77	14	231	45	4	3	46	1.42
51418--51576	80	2.0	79	85	9	216	44	3	3	49	1.36
51489--51653	36	4.4	37	85	6	208	44	6	4	45	1.48
51333--51655	151	2.2	146	77	13	327	44	5	4	45	1.45
52129--53142	165	6.2	165	86	2	1347	25	20	24	30	1.99
52160--53142	329	3.0	329	88	1	1416	25	20	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52150--53142	494	2.0	494	86	1	1398	25	20	24	30	1.98
53970--54019	24	2.1	24	85	7	66	60	16	2	22	1.46
54948--55027	41	2.0	40	95	4	144	45	20	10	25	1.81
64130--64179	24	2.1	24	85	7	66	60	16	2	22	1.46
65008--65394	81	4.7	81	79	6	388	24	20	25	29	1.99
65008--65437	84	5.2	84	78	7	439	24	20	25	29	1.99
65008--65414	165	2.5	165	90	0	627	24	21	25	29	1.99
70628--70665	4	9.8	4	82	5	51	71	2	2	23	1.12
70737--70773	14	2.6	15	75	16	51	78	5	2	13	1.03
70715--70768	22	2.5	21	84	6	63	74	7	7	11	1.23
70856--70929	18	4.0	18	75	14	62	74	2	6	16	1.15
71943--71975	17	1.9	17	93	0	57	75	0	3	21	0.93
71936--71961	13	2.0	13	100	0	52	69	0	7	23	1.14
72000--72318	38	8.7	35	73	13	144	44	6	4	45	1.48
72001--72278	38	7.6	35	76	11	181	45	5	3	46	1.41
75295--75331	19	2.0	20	84	10	51	40	0	0	59	0.97
76043--76077	13	2.7	13	100	0	70	40	5	45	8	1.58
79929--79969	2	21.0	2	95	5	75	51	0	0	48	1.00
80584--80653	25	2.8	24	85	10	88	40	17	0	42	1.49
80777--80851	24	3.1	23	81	9	87	36	21	0	42	1.53
80586--80969	193	2.0	193	94	4	686	38	16	8	36	1.79
81197--81302	30	3.5	30	88	2	151	35	20	23	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84250--84293	2	22.0	2	100	0	88	50	0	0	50	1.00
84387--84429	20	2.2	20	100	0	86	18	20	4	55	1.60
85318--85346	10	2.9	10	100	0	58	20	0	0	79	0.74
98371--98434	23	2.9	23	79	9	62	42	4	0	53	1.22

Tables:   1

The End!