Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007949.1 Hibiscus syriacus cultivar Beakdansim tig00110371_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 222664
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 1 of 2
Found at i:347 original size:30 final size:30
Alignment explanation
Indices: 311--370 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
301 AAAGAAAGAA
311 AGAAATCATGTTGAGAAATTGGTGTACGAG
1 AGAAATCATGTTGAGAAATTGGTGTACGAG
341 AGAAATCATGTTGAGAAATTGGTGTACGAG
1 AGAAATCATGTTGAGAAATTGGTGTACGAG
371 TCCTTTGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.30, T:0.27
Consensus pattern (30 bp):
AGAAATCATGTTGAGAAATTGGTGTACGAG
Found at i:1063 original size:27 final size:27
Alignment explanation
Indices: 1033--1105 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 27
1023 ACGGAAAATA
* *
1033 TAAAATTATAATAAGGATAAAA-CTTTT
1 TAAAATTATAATAAAGA-AAAAGATTTT
1060 TAAAATT-TACTATAAAGAAAAAGATTTT
1 TAAAATTATA--ATAAAGAAAAAGATTTT
1088 TAAAATTTATAATAAAGA
1 TAAAA-TTATAATAAAGA
1106 CAATTTTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
26 2 0.05
27 11 0.28
28 22 0.56
29 2 0.05
30 2 0.05
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.36
Consensus pattern (27 bp):
TAAAATTATAATAAAGAAAAAGATTTT
Found at i:1111 original size:25 final size:25
Alignment explanation
Indices: 1056--1154 Score: 101
Period size: 26 Copynumber: 3.8 Consensus size: 25
1046 AGGATAAAAC
*
1056 TTTTTAAAATTTACT-ATAAAGAAAAAGA
1 TTTTTAAAATTTA-TAATAAAG--ACA-A
1084 TTTTTAAAATTTATAATAAAGACAA
1 TTTTTAAAATTTATAATAAAGACAA
* *
1109 TTTTTTATATTTATAATAAAGGACAA
1 TTTTTAAAATTTATAATAAA-GACAA
* *
1135 TTTTTAGAATTTACAATAAA
1 TTTTTAAAATTTATAATAAA
1155 AGGACAAACT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
25 19 0.31
26 23 0.37
27 1 0.02
28 19 0.31
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.41
Consensus pattern (25 bp):
TTTTTAAAATTTATAATAAAGACAA
Found at i:1133 original size:26 final size:26
Alignment explanation
Indices: 1083--1161 Score: 99
Period size: 25 Copynumber: 3.0 Consensus size: 26
1073 AAAGAAAAAG
*
1083 ATTTTTAAAATTTATAATAAA-GACA
1 ATTTTTTAAATTTATAATAAAGGACA
*
1108 ATTTTTTATATTTATAATAAAGGACA
1 ATTTTTTAAATTTATAATAAAGGACA
*
1134 A-TTTTTAGAATTTACAATAAAAGGACA
1 ATTTTTTA-AATTTATAAT-AAAGGACA
1161 A
1 A
1162 ACTTACAGGA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 25 0.53
26 13 0.28
27 9 0.19
ACGTcount: A:0.48, C:0.05, G:0.08, T:0.39
Consensus pattern (26 bp):
ATTTTTTAAATTTATAATAAAGGACA
Found at i:1139 original size:27 final size:25
Alignment explanation
Indices: 1085--1184 Score: 85
Period size: 26 Copynumber: 3.8 Consensus size: 25
1075 AGAAAAAGAT
*
1085 TTTTAAAATTTATAATAAA-GACAA
1 TTTTAGAATTTATAATAAAGGACAA
**
1109 TTTTTTATATTTATAATAAAGGACAA
1 TTTTAGA-ATTTATAATAAAGGACAA
*
1135 TTTTTAGAATTTACAATAAAAGGACAAA
1 -TTTTAGAATTTATAAT-AAAGGAC-AA
**
1163 CTTACAGGAATTTATAATAAAG
1 -TTTTA-GAATTTATAATAAAG
1185 AATCCATTCA
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
24 5 0.08
25 12 0.20
26 13 0.21
27 12 0.20
28 9 0.15
29 10 0.16
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.37
Consensus pattern (25 bp):
TTTTAGAATTTATAATAAAGGACAA
Found at i:4521 original size:2 final size:2
Alignment explanation
Indices: 4514--4538 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4504 ATTCGTAAAT
4514 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4539 TGTAGATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5272 original size:16 final size:14
Alignment explanation
Indices: 5236--5264 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5226 CTATCAATAT
5236 TCTTATAATTTATA
1 TCTTATAATTTATA
5250 TCTTATAA-TTATA
1 TCTTATAATTTATA
5263 TC
1 TC
5265 CTCTTATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.55
Consensus pattern (14 bp):
TCTTATAATTTATA
Found at i:5618 original size:23 final size:23
Alignment explanation
Indices: 5600--5683 Score: 150
Period size: 23 Copynumber: 3.7 Consensus size: 23
5590 CTCGTATAAA
5600 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
5623 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
5646 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
5669 TGCACCGAAGTGCCA
1 TGCACCGAAGTGCCA
5684 TATAAAATAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.17
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:7242 original size:20 final size:20
Alignment explanation
Indices: 7214--7252 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7204 TTCATTTATT
7214 TGAAAGTGCATCGATACACA
1 TGAAAGTGCATCGATACACA
*
7234 TGAATGTGCATCGATACAC
1 TGAAAGTGCATCGATACAC
7253 TTTGCCCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (20 bp):
TGAAAGTGCATCGATACACA
Found at i:12509 original size:30 final size:30
Alignment explanation
Indices: 12475--12537 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
12465 CAAATCTTTT
*
12475 ACTAATGTTATTATTTATTACAAAATGGTC
1 ACTAATGTTATCATTTATTACAAAATGGTC
* *
12505 ACTAATGTTATCGTTTGTTACAAAATGGTC
1 ACTAATGTTATCATTTATTACAAAATGGTC
12535 ACT
1 ACT
12538 CGACGTTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (30 bp):
ACTAATGTTATCATTTATTACAAAATGGTC
Found at i:15502 original size:311 final size:309
Alignment explanation
Indices: 14873--15798 Score: 1347
Period size: 311 Copynumber: 3.0 Consensus size: 309
14863 ATGGCAGATT
* * * * * *
14873 AAGTTTGTAATGAAACCATGTCATAACCA-CTCAAATTACTCTAGGCTGTCTCGTAGCAAATATA
1 AAGTTTGTAATGAAACTATGTCATATCCACCT-AAATTACTCGAGGCTGTCTCATAGCAAATCTG
* * * * *
14937 TGCATTCATATACTTTCATGTCGTAATATTACTTAC-ATTAACCT--TGTCTACAACCGGAGCCT
65 TGCATTCATATACTTCCATGTGGT-A-A-T-CTCACGA-TAACCTCATGTCTACGATCGGAGCCT
* *
14999 TATTTGGTTAAGTTTGGAGTTTAAGTCAGCAAAACTGAAAGGCATATGTTCCATGCAAAACGTTG
125 TATTTGGTTAAGTTTGGAGTTTAAGTCATCAAAACTGAAAGGTATATG-TCC-TGCAAAACGTTG
* * **
15064 AACTTTATTGCAGTGTGATTCTTGTTT-CCAGAGATCAGGCTCTTCAGCGCACCCTGTTCTTGCC
188 AACTTTATTGCATTGTGATTCTTGTTTCCCAGAGATCAGGCTCTTCAGCGCACACTGTTCTAACC
*
15128 CCTGGAAACCTATGTCTAGACATCTCTTGTATGCTTTCTGTAATTCTGAACCATTTG
253 CCTGGAAACCTATGTCTAGACATCTCTTGTATGCTCTCTGTAATTCTGAACCATTTG
*
15185 AAGTTTGTAATGAAACTAGGTCATATCCACCTAAATTACTCGAGGCTGTCTCATAGCAAATCTGT
1 AAGTTTGTAATGAAACTATGTCATATCCACCTAAATTACTCGAGGCTGTCTCATAGCAAATCTGT
15250 GCATTCATATACTTCCATGTGGTAATCTCACGATAACCTCATGTCTACGATCGGAGCCTTATTTG
66 GCATTCATATACTTCCATGTGGTAATCTCACGATAACCTCATGTCTACGATCGGAGCCTTATTTG
15315 GTTAAGTTTGGAGTTTAAGTCATCAAAACTGAAAGGTATATGCTCCGTGCAAAACGTTGAACTTT
131 GTTAAGTTTGGAGTTTAAGTCATCAAAACTGAAAGGTATATG-TCC-TGCAAAACGTTGAACTTT
*
15380 ATTGCATTGTGATTCTTGTTTCCCAGAGATCAGGCTCTTCAGCGCACACTGTTCTCACCCCTGGA
194 ATTGCATTGTGATTCTTGTTTCCCAGAGATCAGGCTCTTCAGCGCACACTGTTCTAACCCCTGGA
*
15445 AACCTATGTCTAGACATCTCTTGTATGCACTCTGTAATTCTGAACCATTTG
259 AACCTATGTCTAGACATCTCTTGTATGCTCTCTGTAATTCTGAACCATTTG
* *
15496 AAGTTTGTAATGAAACTATGTCATATCCACTTAAATTACTAGAGGCTGTCTCATAGCAAATCTGT
1 AAGTTTGTAATGAAACTATGTCATATCCACCTAAATTACTCGAGGCTGTCTCATAGCAAATCTGT
* * *
15561 GCATTCATATACTTCCATGTGGTAATCTCACGTTAACCTCATGTCTACGCTCGGAGCTTTATTTG
66 GCATTCATATACTTCCATGTGGTAATCTCACGATAACCTCATGTCTACGATCGGAGCCTTATTTG
*
15626 GTTAAGTTTGGAGTTTAAGTTATCAAAACTGAAAGGTATATGT--T-C----CGTTGAACTTTAT
131 GTTAAGTTTGGAGTTTAAGTCATCAAAACTGAAAGGTATATGTCCTGCAAAACGTTGAACTTTAT
* * *
15684 TGCATTGTGATTCTTGTTTCCCAGAGATCAGTCTTTTCAGCGCACTCTGTTCTAACCCCTGGAAA
196 TGCATTGTGATTCTTGTTTCCCAGAGATCAGGCTCTTCAGCGCACACTGTTCTAACCCCTGGAAA
* ** * *
15749 CCTACT-TCTAGACCTCTCTTGCGTCCTCTCTGTAATTCTAAACCATTTG
261 CCTA-TGTCTAGACATCTCTTGTATGCTCTCTGTAATTCTGAACCATTTG
15798 A
1 A
15799 CAAAAATAGC
Statistics
Matches: 569, Mismatches: 39, Indels: 22
0.90 0.06 0.03
Matches are distributed among these distances:
302 116 0.20
303 1 0.00
306 1 0.00
307 1 0.00
308 10 0.02
309 2 0.00
310 105 0.18
311 255 0.45
312 76 0.13
313 2 0.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (309 bp):
AAGTTTGTAATGAAACTATGTCATATCCACCTAAATTACTCGAGGCTGTCTCATAGCAAATCTGT
GCATTCATATACTTCCATGTGGTAATCTCACGATAACCTCATGTCTACGATCGGAGCCTTATTTG
GTTAAGTTTGGAGTTTAAGTCATCAAAACTGAAAGGTATATGTCCTGCAAAACGTTGAACTTTAT
TGCATTGTGATTCTTGTTTCCCAGAGATCAGGCTCTTCAGCGCACACTGTTCTAACCCCTGGAAA
CCTATGTCTAGACATCTCTTGTATGCTCTCTGTAATTCTGAACCATTTG
Found at i:21227 original size:182 final size:181
Alignment explanation
Indices: 20858--21330 Score: 664
Period size: 181 Copynumber: 2.6 Consensus size: 181
20848 GATCCAAATT
* * * **
20858 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGTCAAAACCGGTATTGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATAT-AAAACCGGTATCAAAATGATA
* * * * * * *
20923 AAACCGGTAAAGCGCTACCAGATACATTTAAAGTGTCGGTATTTTAATATAAGGATCGACACTTC
65 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
* *
20988 GTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
130 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
21040 AAAAATGTATCGATCCAAAACGATAT-ACTAGGTAAAAATATAATAAAACCGGTATCAAAATGAT
1 AAAAATGTATCGATCCAAAACGATATAAC-AGGTAAAAATAT-ATAAAACCGGTATCAAAATGAT
*
21104 AAAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTT
64 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* ** *
21168 TGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTAA
129 CGTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* * * * *
21221 AAAAA-ATATTGATCCACAACGATATAACATGTAAAAAATATGATAAAATCGGTATCAAAATGAT
1 AAAAATGTATCGATCCAAAACGATATAACAGGT-AAAAATAT-ATAAAACCGGTATCAAAATGAT
21285 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
64 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
21331 CGTAAGTACG
Statistics
Matches: 262, Mismatches: 25, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
180 20 0.08
181 148 0.56
182 93 0.35
183 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (181 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATATAAAACCGGTATCAAAATGATAA
AACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTCG
TGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:23534 original size:21 final size:21
Alignment explanation
Indices: 23508--23572 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
23498 AAAGACATCA
*
23508 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
23529 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
23550 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
23571 AG
1 AG
23573 GCATAAGAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.11, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:23659 original size:32 final size:32
Alignment explanation
Indices: 23605--23668 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
23595 AAATAGATGG
* *
23605 AGTGGTGAAAGAAGTAGAGGTGTGAGGGGTGA
1 AGTGGTAAAAGAAGTAGAGGTGTGAAGGGTGA
* * *
23637 AGTGGTAAAAGAAGTTGGGGTGTTAAGGGTGA
1 AGTGGTAAAAGAAGTAGAGGTGTGAAGGGTGA
23669 TATTAAGATG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.47, T:0.22
Consensus pattern (32 bp):
AGTGGTAAAAGAAGTAGAGGTGTGAAGGGTGA
Found at i:25477 original size:19 final size:19
Alignment explanation
Indices: 25453--25501 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
25443 AATGTAGGGT
25453 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
25472 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
25491 TAATTTTGTAT
1 TAATTTTGTAT
25502 GTGAATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:26080 original size:200 final size:200
Alignment explanation
Indices: 25732--26895 Score: 1809
Period size: 200 Copynumber: 5.9 Consensus size: 200
25722 AATTTACAAT
* * * *
25732 ATGGCAAACAGGGTGCAACCATAAAGTATCGATCTATATATAAAAAGTGTCGATCTCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
25797 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
25862 ATGAGAGAATAGGTCTAAATAATGTATCGACATTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
25927 AATGA
196 AATGA
*
25932 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
25997 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGATTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
26062 ATGAGAGAATATGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
26127 AATGA
196 AATGA
* * *
26132 AAGGCAAACAGGGTGCAACAATAAAGTGTCGATCC---CAT--AAA----C-AT--C-GAAAC--
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
26182 CCATA---A---GTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
26241 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
26306 AATGA
196 AATGA
* *
26311 ATGGCAAGCAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
26376 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCAGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
26441 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAT
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
26506 AATGA
196 AATGA
26511 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
26576 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * *
26641 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGGTATTTTTGGTCCAA
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
26706 AATGA
196 AATGA
* * * *
26711 ATGGCAAACAGGGTGAAACCATAAAGTGTTGATCCATATATAAAAAGTGACGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * * *
26776 CGAAACCCAAAAGTATACTGTATTAGGTAATTTTTCAATCTAACCGGTATAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * * *
26841 ATGGGAGAATTGGTATATAAT-ATGTATCGACACTGTTT-AATGTTT-TGTCGATATT
131 ATGAGAGAATAGGTCTA-AATAATGTATCGACACT-TTTGTA-GTTTGTGTCGATATT
26896 AATTTAAATA
Statistics
Matches: 891, Mismatches: 49, Indels: 48
0.90 0.05 0.05
Matches are distributed among these distances:
179 153 0.17
182 3 0.00
184 3 0.00
185 3 0.00
187 4 0.00
188 2 0.00
189 2 0.00
190 2 0.00
191 1 0.00
192 4 0.00
194 3 0.00
195 3 0.00
197 3 0.00
200 695 0.78
201 10 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:26474 original size:379 final size:386
Alignment explanation
Indices: 25769--26895 Score: 1779
Period size: 379 Copynumber: 2.9 Consensus size: 386
25759 ATCGATCTAT
* *
25769 ATATAAAAAGTGTCGATCTCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCA
1 ATAT-AAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCA
* * *
25834 ATCTAATCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACATTTTT
65 ATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTT
25899 GTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGA
130 GTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGA
25964 TCCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATT
195 TCCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATT
* *
26029 TTTCAATCTAACCGGTACAAGTATACCGATTTTATGAGAGAATATGTCTAAATAATGTATCGACA
260 TTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACA
26094 CTTTTGTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAAGGCAAACAGGGTG-C-A-A-C-
325 CTTTTGTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAAGGCAAACAGGGTGACAAGACCA
26151 A-AT-AAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAA
1 ATATAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAA
26214 TCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTG
66 TCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTG
* *
26279 TAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGCAAGCAGGGTGCAACAATAAAGTGTCGAT
131 TAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGAT
*
26344 CCATATATAAAAAGTGTCGATCCGATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTT
196 CCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTT
*
26409 TTCAATCTAACCAGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACAC
261 TTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACAC
* *
26474 TTTTGTAGTTTGTGTCGATATTTTTGGTCCATAATGAATGGCAAACAGGGTGCAACAATAAAGTG
326 TTTTGTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAAGGCAAACAGGGTG--AC----AA---
26539 TCGATCCA
382 --GA-CCA
26547 TATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTC
1 -ATAT-AAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTC
*
26612 AATCTAACCGGTACAAGTATACCAGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTT
64 AATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTT
* * * *
26677 TGTAGTTTGTGTCGGTATTTTTGGTCCAAAATGAATGGCAAACAGGGTGAAACCATAAAGTGTTG
129 TGTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCG
* * * *
26742 ATCCATATATAAAAAGTGACGATCCCATAAACATCGAAACCCAAAAGTATACTGTATTAGGTAAT
194 ATCCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAAT
* * * *
26807 TTTTCAATCTAACCGGTATAAGTATACCGGTTTTATGGGAGAATTGGTATATAAT-ATGTATCGA
259 TTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTA-AATAATGTATCGA
*
26871 CACTGTTT-AATGTTT-TGTCGATATT
323 CACT-TTTGTA-GTTTGTGTCGATATT
26896 AATTTAAATA
Statistics
Matches: 690, Mismatches: 31, Indels: 30
0.92 0.04 0.04
Matches are distributed among these distances:
379 359 0.52
381 2 0.00
382 2 0.00
387 1 0.00
393 1 0.00
395 1 0.00
397 1 0.00
398 2 0.00
400 311 0.45
401 10 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (386 bp):
ATATAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAA
TCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTG
TAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGAT
CCATATATAAAAAGTGTCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTT
TTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACAC
TTTTGTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAAGGCAAACAGGGTGACAAGACCA
Found at i:28056 original size:182 final size:183
Alignment explanation
Indices: 27518--28102 Score: 1082
Period size: 183 Copynumber: 3.2 Consensus size: 183
27508 ATCTTCGGAA
27518 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
1 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
27583 AAAAGTGTCGACATTTACACATCGGAACCCAAAATTATAATGTAATAGATAATTTTGTAATATAA
66 AAAAGTGTCGACATTTACACATCGGAACCCAAAATTATAATGTAATAGATAATTTTGTAATATAA
27648 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
131 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
27701 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
1 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
*
27766 AAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAA
66 AAAAGTGTCGACATTTACACATCGGAACCCAAAATTATAATGTAATAGATAATTTTGTAATATAA
*
27831 CCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
131 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
*
27884 ACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTC-
1 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
* *
27948 AAAAGTGTCAACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAA
66 AAAAGTGTCGACATTTACACATCGGAACCCAAAATTATAATGTAATAGATAATTTTGTAATATAA
* *
28013 TCAGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
131 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
* *
28066 ACTTTTTAATTTTGTGACGGTACTTTATGTCCAGAAT
1 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAAT
28103 TATAATGTAC
Statistics
Matches: 393, Mismatches: 9, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
182 149 0.38
183 244 0.62
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (183 bp):
ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
AAAAGTGTCGACATTTACACATCGGAACCCAAAATTATAATGTAATAGATAATTTTGTAATATAA
CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
Found at i:28189 original size:120 final size:120
Alignment explanation
Indices: 27976--28222 Score: 404
Period size: 120 Copynumber: 2.1 Consensus size: 120
27966 ACATCGGAAC
*
27976 CCAGAATTATAATGTAATAGATAATTTTGTAATATAATCAGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCAGTATAAATATACCGGTTTTATGAGC
* *
28041 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGACGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGACAGTACTTTATGT
* * * *
28096 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCAGTATAAATATACCGGTTTTATGAGC
* * *
28161 TAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCAGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGACAGTACTTTATGT
28216 CCAGAAT
1 CCAGAAT
28223 GGAAGAAAAA
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCAGTATAAATATACCGGTTTTATGAGC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGACAGTACTTTATGT
Found at i:31838 original size:87 final size:87
Alignment explanation
Indices: 31734--31953 Score: 413
Period size: 87 Copynumber: 2.5 Consensus size: 87
31724 AAATAGGTCA
* *
31734 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
*
31799 CCCGTTAAATACCTATTTTATT
66 CCCGTTAAATACATATTTTATT
31821 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
31886 CCCGTTAAATACATATTTTATT
66 CCCGTTAAATACATATTTTATT
31908 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTT
1 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTT
31954 GAGTGAGTTT
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 130 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (87 bp):
ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
CCCGTTAAATACATATTTTATT
Found at i:31868 original size:23 final size:23
Alignment explanation
Indices: 31818--31862 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
31808 TACCTATTTT
* *
31818 ATTATATAAGCGCTATCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
31841 ATTATATAAGCGTTACCTAATA
1 ATTATATAAGCGCTACCTAATA
31863 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:32394 original size:23 final size:23
Alignment explanation
Indices: 32363--32435 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
32353 ATAAGTAAAA
*
32363 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
32386 ATATAATGTAATATGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
32409 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
32432 ATAT
1 ATAT
32436 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:32882 original size:23 final size:23
Alignment explanation
Indices: 32851--32923 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
32841 ATAGGTAAAA
* *
32851 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGCTT
*
32874 ATATAATGTAATAGGTAGTGTTT
1 ATATAATGTAATAGGTAGTGCTT
32897 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGCTT
32920 ATAT
1 ATAT
32924 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:33403 original size:23 final size:23
Alignment explanation
Indices: 33340--33412 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
33330 ATAGGTAAAA
* * *
33340 ATATGATGTAATAGGTACCGCTT
1 ATATAATGTAATAGGTAGCGTTT
33363 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGTTT
*
33386 ATATAATGTAATAGGTAGTGTTT
1 ATATAATGTAATAGGTAGCGTTT
33409 ATAT
1 ATAT
33413 TGTAAATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTTT
Found at i:33413 original size:489 final size:489
Alignment explanation
Indices: 32001--33813 Score: 3248
Period size: 489 Copynumber: 3.7 Consensus size: 489
31991 GTGAGTATGG
32001 ACATTAATTTAATGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTA
1 ACATTAATTTAATGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTA
* *
32066 ATGATTTATTTTTTACGTTGCGATATATATTATTATTAAATTAAAAACAATAAACATATATATTA
66 ATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAAAAAACATATATATTA
*
32131 CATATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATA
131 CATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATA
32196 TCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACA
196 TCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACA
32261 TGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATTC-TTTT
261 TGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGA-TCATTTT
* *
32325 TATAAAATGTATGGACACTTTCAATATAATAAGTAAAAATATGATGTAATAGGTAGCGCTTATAT
325 TATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATAT
* *
32390 AATGTAATATGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCTTTT
390 AATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTT
32455 TTATAAAAGTGTCCATACTTTTTTCACTGTGGAAA
455 TTATAAAAGTGTCCATACTTTTTTCACTGTGGAAA
*
32490 ACATTAATTTAATGTTATCTTTTGAGTTAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTA
1 ACATTAATTTAATGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTA
*
32555 ATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAA-AAATAAACATATATATT
66 ATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAAA-AAACATATATATT
*
32619 ACATATTTATTATTATCTTTTGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTAT-AAAT
130 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAAT
32683 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
195 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
* *
32748 ATGAAACACTGTTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAATATCGATCATTTT
260 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTT
32813 TATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATAT
325 TATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATAT
* *
32878 AATGTAATAGGTAGTGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTT
390 AATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTT
32943 TTATAAAAGTGTCCATACTTTTTTCACTGTGGAAA
455 TTATAAAAGTGTCCATACTTTTTTCACTGTGGAAA
32978 ACATTAATTTAA-GATTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCT
1 ACATTAATTTAATG-TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCT
* *
33042 AATGATTTATTTTTTACG-TACGGTATATATTATTATTAAATTAAAAA-AATAAATAAATATATA
65 AATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAA-AAA-ACATATATA
*
33105 TTATATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAA
128 TTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAA
33170 ATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAA
193 ATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAA
*
33235 ACATGAAACACTGTTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATT
258 ACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATT
*
33300 TTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTACCGCTTAT
323 TTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTAT
* *
33365 ATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGTTTATATTGTAAATTATCTATCAT
388 ATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCAT
**
33430 TTTTATAAAAGTGTTTATACTTTTTTCACTGTGGAAA
453 TTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAA
*
33467 ATATTAATTTAA-GATTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCT
1 ACATTAATTTAATG-TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCT
33531 AATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAAAAAACATATATATT
65 AATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAAAAAACATATATATT
*
33596 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAAT
130 ACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAAT
*
33661 ATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGT-GAAAAC
195 ATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAAC
* *
33725 ATGAAACACTATT-AAAAAATTGAAACATAAATTATATAACTTTAAAAAAAGTATCGATCCTTTT
260 ATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTT
33789 TATAAAAAAGTATGGACACTTTCAA
325 TAT-AAAAAGTATGGACACTTTCAA
33814 CATATTATAA
Statistics
Matches: 1281, Mismatches: 34, Indels: 19
0.96 0.03 0.01
Matches are distributed among these distances:
487 88 0.07
488 478 0.37
489 682 0.53
490 31 0.02
491 2 0.00
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (489 bp):
ACATTAATTTAATGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTA
ATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAACAAAAAACATATATATTA
CATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATA
TCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACA
TGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTT
ATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATA
ATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTT
TATAAAAGTGTCCATACTTTTTTCACTGTGGAAA
Found at i:35094 original size:2 final size:2
Alignment explanation
Indices: 35081--35137 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
35071 AATCAAATAC
*
35081 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35123 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
35138 CTATTATTAC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:42357 original size:52 final size:52
Alignment explanation
Indices: 42292--42440 Score: 271
Period size: 52 Copynumber: 2.9 Consensus size: 52
42282 TATTGAACAA
42292 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
1 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
*
42344 TATGTTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
1 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
* *
42396 TATGGTAAAGACTGTTTATGCATAAGTACTTTAATGTTTTTAAAT
1 TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAAT
42441 AAAAACGCCG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 93 1.00
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (52 bp):
TATGGTGAAGACTGTTTATGCATAAGTACTTTAATGTTTCTAAATTATAATG
Found at i:45133 original size:21 final size:21
Alignment explanation
Indices: 45089--45133 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
45079 CGGGTTGTTC
**
45089 GAGCAGCAGCGGAAGCAGCTA
1 GAGCAGCAGCGGAAGCAGAGA
45110 GAGCAGCAGCGGAAGCAGAGA
1 GAGCAGCAGCGGAAGCAGAGA
45131 GAG
1 GAG
45134 AAGTAATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.20, G:0.42, T:0.02
Consensus pattern (21 bp):
GAGCAGCAGCGGAAGCAGAGA
Found at i:45767 original size:43 final size:43
Alignment explanation
Indices: 45581--45829 Score: 162
Period size: 43 Copynumber: 5.8 Consensus size: 43
45571 GACGAAAAGG
* * * * * *
45581 CCGCTAAATCTCAAGACATATTATGCGGCGTTTGT-AGGAAAACG
1 CCGCTAAATATCAACACCTA-T-TGCGGCGTTTGTCTGCAAAACA
* ** * *
45625 CCGCTAAATATCAACATCT-TCTGCGGCGTTTGTAGGAAAAACG
1 CCGCTAAATATCAACACCTAT-TGCGGCGTTTGTCTGCAAAACA
* * * * * * ** *
45668 CCGGTAAAAATAAACATCTACTGCGGCGTTTATGAAG-AAAACG
1 CCGCTAAATATCAACACCTATTGCGGCGTTTGT-CTGCAAAACA
* * * * **
45711 CGGCTAAACATCAACGCCTATTGCGGCGTTTGTCTGCCAAATG
1 CCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGCAAAACA
* * *
45754 CCGTTAAATATCAACACCTATTGCGGCGTTTTTTTGCAAAACA
1 CCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGCAAAACA
* *
45797 CCGCTAAATATCAATACCTTTTGCGGCGTTTGT
1 CCGCTAAATATCAACACCTATTGCGGCGTTTGT
45830 TGAACGCCGC
Statistics
Matches: 163, Mismatches: 38, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
42 14 0.09
43 132 0.81
44 17 0.10
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (43 bp):
CCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGCAAAACA
Found at i:45779 original size:86 final size:85
Alignment explanation
Indices: 45604--45829 Score: 211
Period size: 86 Copynumber: 2.6 Consensus size: 85
45594 AGACATATTA
* * * *
45604 TGCGGCGTTTGTAGGAAAACGCCGCTAAATATCAACATCTTCTGCGGCGTTTGTAGGAAAAACGC
1 TGCGGCGTTTATAAGAAAACGCCGCTAAACATCAACACCTTCTGCGGCGTTTGTAGGAAAAACGC
*
45669 CGGTAAAAATAAACATCTAC
66 CGGTAAAAATAAACACCTAC
* * ** ** *
45689 TGCGGCGTTTATGAAGAAAACGCGGCTAAACATCAACGCCTAT-TGCGGCGTTTGTCTGCCAAAT
1 TGCGGCGTTTAT-AAGAAAACGCCGCTAAACATCAACACCT-TCTGCGGCGTTTGTAGGAAAAAC
* * * *
45753 GCCGTTAAATATCAACACCTAT
64 GCCGGTAAAAATAAACACCTAC
* ** * * * *
45775 TGCGGCGTTTTTTTGCAAAACACCGCTAAATATCAATACCTTTTGCGGCGTTTGT
1 TGCGGCGTTTATAAG-AAAACGCCGCTAAACATCAACACCTTCTGCGGCGTTTGT
45830 TGAACGCCGC
Statistics
Matches: 113, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
85 13 0.12
86 99 0.88
87 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (85 bp):
TGCGGCGTTTATAAGAAAACGCCGCTAAACATCAACACCTTCTGCGGCGTTTGTAGGAAAAACGC
CGGTAAAAATAAACACCTAC
Found at i:46273 original size:47 final size:44
Alignment explanation
Indices: 46214--46314 Score: 114
Period size: 47 Copynumber: 2.2 Consensus size: 44
46204 GTATATATGT
*
46214 TCTAGGTGAATATG-TCATACGTGAAAAGTGTTATATGTGAAAAATG
1 TCTACGTGAATATGAT-ATACGT-AAAAGTGTTATATGTG-AAAATG
* * *
46260 ATCTACGTGAATATGATATATGTAAATGTGTTCTATGTGAAAATG
1 -TCTACGTGAATATGATATACGTAAAAGTGTTATATGTGAAAATG
*
46305 TCTATGTGAA
1 TCTACGTGAA
46315 CAAGTATTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
44 9 0.19
45 6 0.12
46 14 0.29
47 18 0.38
48 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.36
Consensus pattern (44 bp):
TCTACGTGAATATGATATACGTAAAAGTGTTATATGTGAAAATG
Found at i:47634 original size:18 final size:19
Alignment explanation
Indices: 47597--47635 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
47587 TCAAATCAAA
*
47597 ATTAAAATATGATCATTTT
1 ATTAAAATATGATCAATTT
*
47616 ATTAAAAT-TGATTAATTT
1 ATTAAAATATGATCAATTT
47634 AT
1 AT
47636 CTCAAGTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (19 bp):
ATTAAAATATGATCAATTT
Found at i:53280 original size:31 final size:31
Alignment explanation
Indices: 53244--53302 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
53234 AACTTAAAAG
*
53244 AGTTTTGTAATACTGAAATTTAAATAATTTT
1 AGTTTTATAATACTGAAATTTAAATAATTTT
53275 AGTTTTATAATACTGAAATTTAAATAAT
1 AGTTTTATAATACTGAAATTTAAATAAT
53303 CCATACAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.46
Consensus pattern (31 bp):
AGTTTTATAATACTGAAATTTAAATAATTTT
Found at i:53352 original size:22 final size:22
Alignment explanation
Indices: 53327--53752 Score: 525
Period size: 22 Copynumber: 19.5 Consensus size: 22
53317 TAATAAATTC
53327 TTTAAAATAAATCAATTCATAT
1 TTTAAAATAAATCAATTCATAT
*
53349 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATTCATAT
*
53371 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATTCATAT
***
53393 TTTAAAATAAATTTTTTCATAT
1 TTTAAAATAAATCAATTCATAT
53415 TTTAAAATAAATCAA-TCTATAT
1 TTTAAAATAAATCAATTC-ATAT
***
53437 TTTAAAAT-AATTTTTTCATAT
1 TTTAAAATAAATCAATTCATAT
*
53458 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATTCATAT
**
53480 TTTAAAAT-AAT-TTTTCCATAT
1 TTTAAAATAAATCAATT-CATAT
53501 TTTAAAATAAATCAA-TCGATAT
1 TTTAAAATAAATCAATTC-ATAT
53523 TTTAAAATAAATCAA-TCTATAT
1 TTTAAAATAAATCAATTC-ATAT
*
53545 TTTAAAATAAATCAA-TCTATGT
1 TTTAAAATAAATCAATTC-ATAT
*
53567 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATTCATAT
53589 TTTAAAATAAATCAATTCATAT
1 TTTAAAATAAATCAATTCATAT
***
53611 TTTAAAAT--ATTTTTTCATAT
1 TTTAAAATAAATCAATTCATAT
53631 TTTAAAATAAATCAA-TCTATAT
1 TTTAAAATAAATCAATTC-ATAT
*
53653 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATTCATAT
53675 TTTAAAATAAA--AATTTTCATAT
1 TTTAAAATAAATCAA--TTCATAT
*
53697 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATTCATAT
*
53719 TTTAAAATAAATCAATTTATAT
1 TTTAAAATAAATCAATTCATAT
53741 TTTAAAATAAAT
1 TTTAAAATAAAT
53753 TTAAATGATT
Statistics
Matches: 352, Mismatches: 36, Indels: 32
0.84 0.09 0.08
Matches are distributed among these distances:
20 20 0.06
21 36 0.10
22 292 0.83
23 2 0.01
24 2 0.01
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (22 bp):
TTTAAAATAAATCAATTCATAT
Found at i:53561 original size:130 final size:131
Alignment explanation
Indices: 53327--53750 Score: 615
Period size: 130 Copynumber: 3.2 Consensus size: 131
53317 TAATAAATTC
***
53327 TTTAAAATAAATCAATTCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATTCATATTTTAAAAT-AATTTTTCCATATTTTAAAATAAATCAATCCATA
** * *** *
53392 TTTTAAAATAAAT-TTTTTCATATTTTAAAATAAATCAATCTATATTTTAAAAT-AATTTTTTCA
65 TTTTAAAATAAATCAATCT-ATATTTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCA
53455 TAT
129 TAT
* *
53458 TTTAAAATAAATCAATCCATATTTTAAAATAATTTTTCCATATTTTAAAATAAATCAATCGATAT
1 TTTAAAATAAATCAATTCATATTTTAAAATAATTTTTCCATATTTTAAAATAAATCAATCCATAT
*
53523 TTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCTATGTTTTAAAATAAATCAATCCATA
66 TTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCATA
53588 T
131 T
* *
53589 TTTAAAATAAATCAATTCATATTTTAAAAT-ATTTTTTCATATTTTAAAATAAATCAATCTATAT
1 TTTAAAATAAATCAATTCATATTTTAAAATAATTTTTCCATATTTTAAAATAAATCAATCCATAT
* *
53653 TTTAAAATAAATCAATCCATATTTTAAAATAAA--AATTTTCATATTTTAAAATAAATCAATCCA
66 TTTAAAATAAATCAATCTATATTTTAAAATAAATCAA-TCT-ATATTTTAAAATAAATCAATCCA
53716 TAT
129 TAT
*
53719 TTTAAAATAAATCAATTTATATTTTAAAATAA
1 TTTAAAATAAATCAATTCATATTTTAAAATAA
53751 ATTTAAATGA
Statistics
Matches: 268, Mismatches: 20, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
128 2 0.01
129 2 0.01
130 194 0.72
131 70 0.26
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (131 bp):
TTTAAAATAAATCAATTCATATTTTAAAATAATTTTTCCATATTTTAAAATAAATCAATCCATAT
TTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCATA
T
Found at i:68768 original size:40 final size:39
Alignment explanation
Indices: 68699--68775 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 39
68689 AATTGTTGAT
**
68699 GAGTGCTTCAACTTTCTTTCTTTTCTTTTCTTTGCTTTTC
1 GAGTGCTTCAACTTTCTTTCTGATCTTTTC-TTGCTTTTC
68739 GAGTGCTTTCAA-TTTCTTTGCTGAT-TTTTCTTGCTTT
1 GAGTGC-TTCAACTTTCTTT-CTGATCTTTTCTTGCTTT
68776 CTTTCACTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
39 7 0.21
40 18 0.55
41 8 0.24
ACGTcount: A:0.09, C:0.19, G:0.13, T:0.58
Consensus pattern (39 bp):
GAGTGCTTCAACTTTCTTTCTGATCTTTTCTTGCTTTTC
Found at i:71972 original size:214 final size:214
Alignment explanation
Indices: 71601--72026 Score: 640
Period size: 214 Copynumber: 2.0 Consensus size: 214
71591 AAAGCTTCAG
* * * *
71601 ATAAGAAAAGTGGCACAAATAAGGCTCATTCCAATGACTCTGATGCACATGGAAAGGATTCAAAC
1 ATAAGAAAAGCGGCACAAATAAAGCTCATTCCAATGACTCTGATGCACATGGAAAGGACTCAAAA
* * * *
71666 GAGATAACAGTCGCACCCGAAACAACTCAACAAATTGCTATTGTTGATGATTCCAATGACATCCA
66 GAGAGAACAATCGCACCCGAAACAACTCAACAAATTGCTATTGTCGATGATTCCAAAGACATCCA
* *
71731 GGAGTTGCAGAGTACTACTTCGATCGTAACACCGGAAGAAAATGAAATTGCTCAAAGCTCCAAGG
131 GGAGTTGCAGAGTACTACTTCGATCGTAACACCCGAAGAAAATGAAATTGCTCAAAGCTACAAGG
*
71796 GGAACTATCTTATTGAAAA
196 GGAACCATCTTATTGAAAA
* * *
71815 ATAAGAAAAGCGGCACAGATAAAGCTCATTCCAGTGATTCTGATGCACATGGAAAGGACTCAAAA
1 ATAAGAAAAGCGGCACAAATAAAGCTCATTCCAATGACTCTGATGCACATGGAAAGGACTCAAAA
* * * * *
71880 GAGGGAACAATTGCACCCGAAGCAACTCAACAAATTGCTGTTGTCGATGATTGCAAAGACATCCT
66 GAGAGAACAATCGCACCCGAAACAACTCAACAAATTGCTATTGTCGATGATTCCAAAGACATCC-
*
71945 A-GAGTTGCAGAGTACTACATT-GATCGTAACACCCGAAGAAAATGAAATTTCTCAAAGCTACAA
130 AGGAGTTGCAGAGTACTAC-TTCGATCGTAACACCCGAAGAAAATGAAATTGCTCAAAGCTACAA
72008 GGGGAACCATCTTATTGAA
194 GGGGAACCATCTTATTGAA
72027 GATAACAAGC
Statistics
Matches: 190, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
214 187 0.98
215 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (214 bp):
ATAAGAAAAGCGGCACAAATAAAGCTCATTCCAATGACTCTGATGCACATGGAAAGGACTCAAAA
GAGAGAACAATCGCACCCGAAACAACTCAACAAATTGCTATTGTCGATGATTCCAAAGACATCCA
GGAGTTGCAGAGTACTACTTCGATCGTAACACCCGAAGAAAATGAAATTGCTCAAAGCTACAAGG
GGAACCATCTTATTGAAAA
Found at i:77678 original size:16 final size:17
Alignment explanation
Indices: 77653--77691 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
77643 AACGTCTTTT
77653 AAAAACAATTTT-TAAG
1 AAAAACAATTTTATAAG
*
77669 AAAAATAATTTTATAAG
1 AAAAACAATTTTATAAG
77686 ACAAAA
1 A-AAAA
77692 GTTTGGTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 5 0.25
18 4 0.20
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (17 bp):
AAAAACAATTTTATAAG
Found at i:80274 original size:25 final size:25
Alignment explanation
Indices: 80240--80314 Score: 132
Period size: 25 Copynumber: 3.0 Consensus size: 25
80230 GAGTAGGGGA
* *
80240 TTAGGGTTTGAAACCCTAATTTGTT
1 TTAGGGTTTGAAACCCTAATCTGAT
80265 TTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAATCTGAT
80290 TTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAATCTGAT
80315 GGGTTGTTGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAATCTGAT
Found at i:80346 original size:22 final size:22
Alignment explanation
Indices: 80321--80391 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
80311 TGATGGGTTG
80321 TTGGGCTCCGGGATTGGGCCAA
1 TTGGGCTCCGGGATTGGGCCAA
*
80343 TTGGGCTTCGGG-TT--G----
1 TTGGGCTCCGGGATTGGGCCAA
80358 TTGGGCTCCGGGATTGGGCCAA
1 TTGGGCTCCGGGATTGGGCCAA
*
80380 TTGGGCTTCGGG
1 TTGGGCTCCGGG
80392 TTGTTGGGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
15 11 0.28
16 2 0.05
18 1 0.03
19 1 0.03
21 2 0.05
22 22 0.56
ACGTcount: A:0.08, C:0.20, G:0.44, T:0.28
Consensus pattern (22 bp):
TTGGGCTCCGGGATTGGGCCAA
Found at i:80365 original size:37 final size:37
Alignment explanation
Indices: 80315--80414 Score: 200
Period size: 37 Copynumber: 2.7 Consensus size: 37
80305 CTAATCTGAT
80315 GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
1 GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
80352 GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
1 GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
80389 GGGTTGTTGGGCTCCGGGATTGGGCC
1 GGGTTGTTGGGCTCCGGGATTGGGCC
80415 TTTGTAATCT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.07, C:0.19, G:0.45, T:0.29
Consensus pattern (37 bp):
GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
Found at i:80477 original size:3 final size:3
Alignment explanation
Indices: 80469--80506 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
80459 TATGTAAAAT
80469 TAA TAA TAA TAA TAA TTAA TAA TAA TAA -AA TAA -AA TAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
80507 AAAAATAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.12
3 25 0.78
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:80488 original size:13 final size:13
Alignment explanation
Indices: 80472--80496 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80462 GTAAAATTAA
80472 TAATAATAATAAT
1 TAATAATAATAAT
80485 TAATAATAATAA
1 TAATAATAATAA
80497 AATAAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TAATAATAATAAT
Found at i:80505 original size:13 final size:15
Alignment explanation
Indices: 80463--80517 Score: 69
Period size: 16 Copynumber: 3.7 Consensus size: 15
80453 ATGTAATATG
80463 TAAAATTAATAATAA
1 TAAAATTAATAATAA
80478 TAATAATTAATAATAA
1 TAA-AATTAATAATAA
80494 TAAAA-TAA-AATAA
1 TAAAATTAATAATAA
* *
80507 AAAAATAAATA
1 TAAAATTAATA
80518 TAAAAGACCC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 9 0.26
14 5 0.14
15 6 0.17
16 15 0.43
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
TAAAATTAATAATAA
Found at i:80505 original size:16 final size:17
Alignment explanation
Indices: 80463--80506 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
80453 ATGTAATATG
80463 TAAAATTAATAATAATAA
1 TAAAA-TAATAATAATAA
80481 TAATTAATAATAATAA-AA
1 TAA--AATAATAATAATAA
80499 TAAAATAA
1 TAAAATAA
80507 AAAAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 5 0.21
18 8 0.33
19 9 0.38
20 2 0.08
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATAATAATAATAA
Found at i:81994 original size:16 final size:16
Alignment explanation
Indices: 81973--82007 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
81963 TTTATTTATT
81973 TTTTTC-TTCTTTTTCA
1 TTTTTCATT-TTTTTCA
81989 TTTTTCATTTTTTTCA
1 TTTTTCATTTTTTTCA
82005 TTT
1 TTT
82008 CCTTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTCATTTTTTTCA
Found at i:82013 original size:21 final size:21
Alignment explanation
Indices: 81984--82023 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
81974 TTTTCTTCTT
81984 TTTCATTTTTCATTTTTTTCA
1 TTTCATTTTTCATTTTTTTCA
* **
82005 TTTCCTTTTTTTTTTTTTT
1 TTTCATTTTTCATTTTTTT
82024 AAGTATAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTCATTTTTCATTTTTTTCA
Found at i:89529 original size:16 final size:17
Alignment explanation
Indices: 89504--89542 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
89494 AACGTCTTTT
89504 AAAAACAATTTT-TAAG
1 AAAAACAATTTTATAAG
*
89520 AAAAATAATTTTATAAG
1 AAAAACAATTTTATAAG
89537 ACAAAA
1 A-AAAA
89543 GTTTGGTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 5 0.25
18 4 0.20
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (17 bp):
AAAAACAATTTTATAAG
Found at i:92113 original size:25 final size:25
Alignment explanation
Indices: 92079--92153 Score: 123
Period size: 25 Copynumber: 3.0 Consensus size: 25
92069 GAGTAGGGGA
* *
92079 TTAGGGTTTGAAACCCTAATTTGTT
1 TTAGGGTTTGAAACCCTAATCTGAT
*
92104 TTAGGGTTTGAAACCTTAATCTGAT
1 TTAGGGTTTGAAACCCTAATCTGAT
92129 TTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAATCTGAT
92154 GGGTTGTTGG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAATCTGAT
Found at i:92185 original size:22 final size:22
Alignment explanation
Indices: 92160--92230 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
92150 TGATGGGTTG
92160 TTGGGCTCCGGGATTGGGCCAA
1 TTGGGCTCCGGGATTGGGCCAA
*
92182 TTGGGCTTCGGG-TT--G----
1 TTGGGCTCCGGGATTGGGCCAA
92197 TTGGGCTCCGGGATTGGGCCAA
1 TTGGGCTCCGGGATTGGGCCAA
*
92219 TTGGGCTTCGGG
1 TTGGGCTCCGGG
92231 TTGTTGGGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
15 11 0.28
16 2 0.05
18 1 0.03
19 1 0.03
21 2 0.05
22 22 0.56
ACGTcount: A:0.08, C:0.20, G:0.44, T:0.28
Consensus pattern (22 bp):
TTGGGCTCCGGGATTGGGCCAA
Found at i:92204 original size:37 final size:37
Alignment explanation
Indices: 92154--92253 Score: 200
Period size: 37 Copynumber: 2.7 Consensus size: 37
92144 CTAATCTGAT
92154 GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
1 GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
92191 GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
1 GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
92228 GGGTTGTTGGGCTCCGGGATTGGGCC
1 GGGTTGTTGGGCTCCGGGATTGGGCC
92254 TTTGTAATCT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.07, C:0.19, G:0.45, T:0.29
Consensus pattern (37 bp):
GGGTTGTTGGGCTCCGGGATTGGGCCAATTGGGCTTC
Found at i:92316 original size:3 final size:3
Alignment explanation
Indices: 92308--92345 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
92298 TATGTAAAAT
92308 TAA TAA TAA TAA TAA TTAA TAA TAA TAA -AA TAA -AA TAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
92346 AAAAATAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.12
3 25 0.78
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:92327 original size:13 final size:13
Alignment explanation
Indices: 92311--92335 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92301 GTAAAATTAA
92311 TAATAATAATAAT
1 TAATAATAATAAT
92324 TAATAATAATAA
1 TAATAATAATAA
92336 AATAAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TAATAATAATAAT
Found at i:92344 original size:13 final size:15
Alignment explanation
Indices: 92302--92356 Score: 69
Period size: 16 Copynumber: 3.7 Consensus size: 15
92292 ATGTAATATG
92302 TAAAATTAATAATAA
1 TAAAATTAATAATAA
92317 TAATAATTAATAATAA
1 TAA-AATTAATAATAA
92333 TAAAA-TAA-AATAA
1 TAAAATTAATAATAA
* *
92346 AAAAATAAATA
1 TAAAATTAATA
92357 TAAAAGACCC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 9 0.26
14 5 0.14
15 6 0.17
16 15 0.43
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
TAAAATTAATAATAA
Found at i:92344 original size:16 final size:17
Alignment explanation
Indices: 92302--92345 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
92292 ATGTAATATG
92302 TAAAATTAATAATAATAA
1 TAAAA-TAATAATAATAA
92320 TAATTAATAATAATAA-AA
1 TAA--AATAATAATAATAA
92338 TAAAATAA
1 TAAAATAA
92346 AAAAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 5 0.21
18 8 0.33
19 9 0.38
20 2 0.08
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATAATAATAATAA
Found at i:92703 original size:113 final size:112
Alignment explanation
Indices: 92392--92834 Score: 690
Period size: 113 Copynumber: 3.9 Consensus size: 112
92382 TCTACAGATT
* * * * *
92392 CATAATAATATAACATGTAAAAAAATAACAAAACCGGTCTATAAATGACAAAACAGGTAAAACGC
1 CATAACAATATAACAGGTAAAAAAATGACAAAACCGATCTATAAATGACAAAACAGGTAAAGCGC
* * *
92457 TACCGGATATATTGAAAGTGTCGATACTTTATAAAAACATATTGATC
66 TACCGGATATATTGAAAGTGTCGATATTTTATAAAAATATATCGATC
* *
92504 CATAACAATATAACAGGT-AAAAATTGACAAAACCGGTCTATAAATGACAAAACAGGTAAAGCGC
1 CATAACAATATAACAGGTAAAAAAATGACAAAACCGATCTATAAATGACAAAACAGGTAAAGCGC
92568 TACCGGATATATTGAAAGTGTCGATATTTTATAAAAATATATCGATC
66 TACCGGATATATTGAAAGTGTCGATATTTTATAAAAATATATCGATC
*
92615 CATAACAATATAACAGGTAAAAAAAATGACAAAACCGATCTATAAATGACAAAACAGGTAAAGTG
1 CATAACAATATAACAGGT-AAAAAAATGACAAAACCGATCTATAAATGACAAAACAGGTAAAGCG
* *
92680 CTACCGGATATATTGAAAGTGTCGATAATTTATAAAAATGTATCGATC
65 CTACCGGATATATTGAAAGTGTCGATATTTTATAAAAATATATCGATC
*
92728 CATAATAATATAACAGGTAAAAAAAATGACAAAACCGATCTATAAATGACAAAACAGGTAAAGCG
1 CATAACAATATAACAGGT-AAAAAAATGACAAAACCGATCTATAAATGACAAAACAGGTAAAGCG
* * * *
92793 CTACCAGATATGTTGATAGTGTCGATATTTTATTATAAATAT
65 CTACCGGATATATTGAAAGTGTCGATATTTTA-TAAAAATAT
92835 CGACACTTTT
Statistics
Matches: 307, Mismatches: 21, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
111 105 0.34
112 16 0.05
113 179 0.58
114 7 0.02
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.25
Consensus pattern (112 bp):
CATAACAATATAACAGGTAAAAAAATGACAAAACCGATCTATAAATGACAAAACAGGTAAAGCGC
TACCGGATATATTGAAAGTGTCGATATTTTATAAAAATATATCGATC
Found at i:93009 original size:182 final size:182
Alignment explanation
Indices: 92695--93187 Score: 763
Period size: 182 Copynumber: 2.7 Consensus size: 182
92685 GGATATATTG
* *
92695 AAAGTGTCGATAATTTATAAAAATGTATCGATCCATAATAATATAACAGGTAAAAAAAATGACAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAAAAATATAACAGGT-AAAAAAATGACAA
* *
92760 AACCGATCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATGTTGATAGTGTCGATATTTTA
65 AACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATGTTGATAGTGTCGATACTTTA
* * * *
92825 TTATAAATATCGACACTTTTAGAATTTAAAAGAGAAGAAGTTATAGCGCTAAT
130 TTATAAATATCGACACTTTTAGAATTAAAAAAAAAAGAAGTTATAGCGCCAAT
* *
92878 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAAAAATATAACAGGTAAAAAAATGACAAA
* ** * * *
92943 ATCGGTCTCGAAATGACAAAATC-GGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTA
66 ACCGGTCTATAAATGACAAAA-CAGGTAAAGCGCTACCAGATATGTTGATAGTGTCGATACTTTA
* *
93007 TTATAAGTATCGACACTTTTGGAATTAAAAAAAAAAGAAGTTATAGCGCCAAT
130 TTATAAATATCGACACTTTTAGAATTAAAAAAAAAAGAAGTTATAGCGCCAAT
* *
93060 AAAGTGTCGATACTTTATAAAAATGTTTCGATCTATAAAAATATAACAGGTAAAAAAATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAAAAATATAACAGGTAAAAAAATGACAAA
* *
93125 ACCGGTCTATAAATGACAAAACAGATAAAGCGCTACCAGATATGTTGATAGTGTCGACACTTT
66 ACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATGTTGATAGTGTCGATACTTT
93188 TGAAATTTAA
Statistics
Matches: 279, Mismatches: 29, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
181 1 0.00
182 228 0.82
183 50 0.18
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (182 bp):
AAAGTGTCGATACTTTATAAAAATGTATCGATCCATAAAAATATAACAGGTAAAAAAATGACAAA
ACCGGTCTATAAATGACAAAACAGGTAAAGCGCTACCAGATATGTTGATAGTGTCGATACTTTAT
TATAAATATCGACACTTTTAGAATTAAAAAAAAAAGAAGTTATAGCGCCAAT
Found at i:93208 original size:162 final size:162
Alignment explanation
Indices: 93011--93343 Score: 479
Period size: 162 Copynumber: 2.1 Consensus size: 162
93001 ACTTTATTAT
* *
93011 AAGTATCGACACTTTTGGAATTAAAAAAAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTT
1 AAGTGTCGACACTTTTGAAATTAAAAAAAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTT
* * * *
93076 ATAAAAATGTTTCGATCTATAAAAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGA
66 ATAAAAATGTATCGATCCATAAAAATATAACAAGTAAAAAAATGACAAAACCGGTCTAGAAATGA
**
93141 CAAAACAGATAAAGCGCTACC-AGATATGTTGA
131 CAAAACAGATAAAGAACTACCGA-ATATGTTGA
* * ** *
93173 TAGTGTCGACACTTTTGAAATTTAAAAGTAAAGAAGTTATAGCGCTAATAAAGTGTCGATACTTT
1 AAGTGTCGACACTTTTGAAATTAAAAAAAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTT
* * * *
93238 ATAAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAACCGGTTTCGAAATGA
66 ATAAAAATGTATCGATCCATAAAAATATAACAAGTAAAAAAATGACAAAACCGGTCTAGAAATGA
* *
93303 CAAAACCGGTAAAGAACTACCGAATATGTTGA
131 CAAAACAGATAAAGAACTACCGAATATGTTGA
93335 AAGTGTCGA
1 AAGTGTCGA
93344 TATTTTATTA
Statistics
Matches: 150, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
162 149 0.99
163 1 0.01
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (162 bp):
AAGTGTCGACACTTTTGAAATTAAAAAAAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTT
ATAAAAATGTATCGATCCATAAAAATATAACAAGTAAAAAAATGACAAAACCGGTCTAGAAATGA
CAAAACAGATAAAGAACTACCGAATATGTTGA
Found at i:93398 original size:344 final size:346
Alignment explanation
Indices: 92833--93832 Score: 1535
Period size: 344 Copynumber: 2.8 Consensus size: 346
92823 TATTATAAAT
92833 ATCGACACTTTT-AGAATTTAAAAGAGAAGAAGTTATAGCGCTAATAAAGTGTCGATACTTTATA
1 ATCGACACTTTTGA-AATTTAAAAGA-AAGAAGTTATAGCGCTAATAAAGTGTCGATACTTTATA
* * *
92897 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAATCGGTCTCGAAATGACAA
64 AAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAACCGGTTTCGAAATGACAA
*
92962 AATCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTATTATAAGTATCGACACTTTT
129 AACCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTATTATAAGTATCGACACTTTT
* * *
93027 GGAATTAAAAAAAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTTTCGAT
194 GGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGAT
* *
93092 CTATAAAAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGATAAAGCG
259 CCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGATAAAGCG
93157 CTACCAGATATGTTGATAG-T-G
324 CTACCAGATATGTTGATAGATCG
93178 -TCGACACTTTTGAAATTTAAAAGTAAAGAAGTTATAGCGCTAATAAAGTGTCGATACTTTATAA
1 ATCGACACTTTTGAAATTTAAAAG-AAAGAAGTTATAGCGCTAATAAAGTGTCGATACTTTATAA
93242 AAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAACCGGTTTCGAAATGACAAA
65 AAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAACCGGTTTCGAAATGACAAA
* * * *
93307 ACCGGTAAAGAACTACCGAATATGTTGAAAGTGTCGATATTTTATTATAAATATCGACACTTTTG
130 ACCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTATTATAAGTATCGACACTTTTG
93372 GAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATC
195 GAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATC
* *
93437 CATAACAATATAACATGT-AAAAAATGACAAAACCGGTCTATAAATGACAAAACAGGTAAAGCGC
260 CATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGATAAAGCGC
**
93501 TATTAGATATGTTGATAGTATCG
325 TACCAGATATGTTGATAG-ATCG
*
93524 ATACTTTATTATAAGTATCTACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGTTAATAAAG
1 AT-C----------G-----ACACTTTTGAAATTTAAAAG-AAAGAAGTTATAGCGCTAATAAAG
*
93589 TGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAAC-AGATAAAAATATGACAAAACC
49 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAAG-TAAAAATATGACAAAACC
* *
93653 AGTTTCGAAATGACAAAACCGATAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTATTAT
113 GGTTTCGAAATGACAAAACCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTATTAT
* * *
93718 AAGTACCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCTATACTTT
178 AAGTATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTT
*
93783 ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAA
243 ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAA
93833 TCAGTAGTAA
Statistics
Matches: 600, Mismatches: 31, Indels: 29
0.91 0.05 0.04
Matches are distributed among these distances:
343 61 0.10
344 259 0.43
345 3 0.00
346 1 0.00
347 1 0.00
348 1 0.00
358 1 0.00
362 2 0.00
363 258 0.43
364 13 0.02
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (346 bp):
ATCGACACTTTTGAAATTTAAAAGAAAGAAGTTATAGCGCTAATAAAGTGTCGATACTTTATAAA
AATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAACCGGTTTCGAAATGACAAAA
CCGGTAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTATTATAAGTATCGACACTTTTGG
AATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCC
ATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAATGACAAAACAGATAAAGCGCT
ACCAGATATGTTGATAGATCG
Found at i:93566 original size:181 final size:180
Alignment explanation
Indices: 93178--93832 Score: 1024
Period size: 182 Copynumber: 3.6 Consensus size: 180
93168 GTTGATAGTG
* *
93178 TCGACACTTTTGAAATTTAAAAGTAAAGAAGTTATAGCGCTAATAAAGTGTCGATACTTTATAAA
1 TCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAA
93243 AATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAACCGGTTTCGAAATGACAAAA
66 AATGTATCGATCCATAACAATATAAC-AGTAAAAATATGACAAAACCGGTTTCGAAATGACAAAA
* * * *
93308 CCGGTAAAGAACTACCGAATATGTTGAAAGTGTCGATATTTTATTATAAATA
130 CCGGTAAAGAGCTACAG-ATATGTTGAAAGTGTCGATACTTTATTATAAGTA
*
93360 TCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAA
1 TCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAA
* **
93425 AATGTATCGATCCATAACAATATAACATGTAAAAA-ATGACAAAACCGGTCTATAAATGACAAAA
66 AATGTATCGATCCATAACAATATAACA-GTAAAAATATGACAAAACCGGTTTCGAAATGACAAAA
* * * * *
93489 CAGGTAAAGCGCTATTAGATATGTTGATAGTATCGATACTTTATTATAAGTA
130 CCGGTAAAGAGCTA-CAGATATGTTGAAAGTGTCGATACTTTATTATAAGTA
* **
93541 TCTACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGTTAATAAAGTGTCGATACTTTATAAA
1 TCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAA
* *
93606 AATGTATCGATCCATAATAATATAACAGATAAAAATATGACAAAACCAGTTTCGAAATGACAAAA
66 AATGTATCGATCCATAACAATATAACAG-TAAAAATATGACAAAACCGGTTTCGAAATGACAAAA
* *
93671 CCGATAAAGAGCTACCGGATATGTTGAAAGTGTCGATACTTTATTATAAGTA
130 CCGGTAAAGAGCTA-CAGATATGTTGAAAGTGTCGATACTTTATTATAAGTA
* *
93723 CCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCTATACTTTATAAA
1 TCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAA
93788 AATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAA
66 AATGTATCGATCCATAACAATATAACA-GTAAAAATATGACAAAA
93833 TCAGTAGTAA
Statistics
Matches: 430, Mismatches: 38, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
180 1 0.00
181 161 0.37
182 267 0.62
183 1 0.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (180 bp):
TCGACACTTTTGAAATTTAAAAGAAAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAA
AATGTATCGATCCATAACAATATAACAGTAAAAATATGACAAAACCGGTTTCGAAATGACAAAAC
CGGTAAAGAGCTACAGATATGTTGAAAGTGTCGATACTTTATTATAAGTA
Found at i:94317 original size:23 final size:23
Alignment explanation
Indices: 94271--94318 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
94261 AAATATGTCA
*
94271 ATATAAACGTTACCTATTACATT
1 ATATAAACGTTACCTAATACATT
* * *
94294 ATATAAACGTTGCTTAATATATT
1 ATATAAACGTTACCTAATACATT
94317 AT
1 AT
94319 TGTACTTGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (23 bp):
ATATAAACGTTACCTAATACATT
Found at i:95624 original size:36 final size:36
Alignment explanation
Indices: 95577--95647 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
95567 CAGCAAGATT
95577 GTGCGTTGGCATCTTGGTTGCTCGCATCAATTAGTA
1 GTGCGTTGGCATCTTGGTTGCTCGCATCAATTAGTA
95613 GTGCGTTGGCATCTTGGTTGCTCGCATCAATTAGT
1 GTGCGTTGGCATCTTGGTTGCTCGCATCAATTAGT
95648 CCCTCCATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.15, C:0.20, G:0.28, T:0.37
Consensus pattern (36 bp):
GTGCGTTGGCATCTTGGTTGCTCGCATCAATTAGTA
Found at i:96723 original size:36 final size:36
Alignment explanation
Indices: 96671--96962 Score: 363
Period size: 36 Copynumber: 8.0 Consensus size: 36
96661 AGAAATACAA
*
96671 GAACGGAAGGAAGCATCGGCACTTCCGATTCAAGTC
1 GAACGGAAGGAGGCATCGGCACTTCCGATTCAAGTC
* *
96707 GAATGGAAGGAGGCATCGGCATTACCGTTTCTGATTCAAGTC
1 GAACGGAAGGAGGCATCGGC---A-C--TTCCGATTCAAGTC
*
96749 GAATGGAAGGAGGCATCGGCACTTCCGATTCAAGTC
1 GAACGGAAGGAGGCATCGGCACTTCCGATTCAAGTC
* * * *
96785 GAACGGAAGGAAGCATCGACACTTCCGATTTAAGTA
1 GAACGGAAGGAGGCATCGGCACTTCCGATTCAAGTC
* * *
96821 GAACGGAAGGAAGCATCGGCACCTCCGAGTCAAGTC
1 GAACGGAAGGAGGCATCGGCACTTCCGATTCAAGTC
*
96857 GAACGGAAGGAGGCATCGGTC-CTTCCGAGTCAAGTC
1 GAACGGAAGGAGGCATCGG-CACTTCCGATTCAAGTC
*
96893 GAACGGAAGGAGGCATCAGCACTTCCGATTCAAGTC
1 GAACGGAAGGAGGCATCGGCACTTCCGATTCAAGTC
* * *
96929 GAACGGAATGAGGCGTC-GCACTTTCGATTCAAGT
1 GAACGGAAGGAGGCATCGGCACTTCCGATTCAAGT
96963 GTTCATTTTT
Statistics
Matches: 227, Mismatches: 21, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
35 17 0.07
36 172 0.76
37 1 0.00
38 1 0.00
39 2 0.01
40 1 0.00
42 33 0.15
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (36 bp):
GAACGGAAGGAGGCATCGGCACTTCCGATTCAAGTC
Found at i:104013 original size:190 final size:194
Alignment explanation
Indices: 103765--104178 Score: 529
Period size: 190 Copynumber: 2.1 Consensus size: 194
103755 AATTCATAGT
** *
103765 CCTTTTGATTATTGTAAATTAAAAGATAATTTTTAATTTGAATATTAATAAGATAATTATTCTTT
1 CCTTTTGACAATTGTAAATTAAAAGATAATTTTTAATTTGAATATTAATAAGATAATTACTCTTT
* * *
103830 TAATAAGTCAATTTAAAAATGTATTTGTTATC-TTTTTAATTTTGAATATTAAAATATAATTATA
66 TAATAAGTCAATTTAAAAATGTATTTGTTACCTTTTTTAACTTTGAATATT-AAAGATAATTATA
* * * * *
103894 TAC-TTTTATACATTTTAAATTAAAA-TA-ATATCTGTTTAAGTTAGAATAGTAAAAGGAGTTTA
130 TACTTTTTATACATATCAAATTAAAACGATATATATATTTAAGTTAGAATAGTAAAAGGAGTTTA
* * *
103956 CCTTTTGACAATTGTAAATT-AAATAT-ATTATTTAATTTGAATATTAGTATGATAATTACTCTT
1 CCTTTTGACAATTGTAAATTAAAAGATAATT-TTTAATTTGAATATTAATAAGATAATTACTCTT
*
104019 TTAATATGTCAATTTAAAAATGTATTTGTTACCTTTTTTAACTTTGAATATTAAAGATAATTATA
65 TTAATAAGTCAATTTAAAAATGTATTTGTTACCTTTTTTAACTTTGAATATTAAAGATAATTATA
* * * * *
104084 TTCTTTTTATATATATCAAATTAAAACGATATATATATTTTAGTTTGAATGGTAAAAGGAGTTTT
130 TACTTTTTATACATATCAAATTAAAACGATATATATATTTAAGTTAGAATAGTAAAAGGAG-TTT
104149 A
194 A
*
104150 TCTTTTTGA-ATATT-TCAAATTAAAAGATA
1 -CCTTTTGACA-ATTGT-AAATTAAAAGATA
104179 TTATTATCTA
Statistics
Matches: 190, Mismatches: 22, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
189 3 0.02
190 80 0.42
191 54 0.28
192 1 0.01
193 26 0.14
194 6 0.03
195 15 0.08
196 5 0.03
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (194 bp):
CCTTTTGACAATTGTAAATTAAAAGATAATTTTTAATTTGAATATTAATAAGATAATTACTCTTT
TAATAAGTCAATTTAAAAATGTATTTGTTACCTTTTTTAACTTTGAATATTAAAGATAATTATAT
ACTTTTTATACATATCAAATTAAAACGATATATATATTTAAGTTAGAATAGTAAAAGGAGTTTA
Found at i:104209 original size:68 final size:65
Alignment explanation
Indices: 104085--104209 Score: 146
Period size: 65 Copynumber: 1.9 Consensus size: 65
104075 ATAATTATAT
* * *
104085 TCTTTTTATATATATCAAATTAAAACGATATATATATTTTAGTTTGAATGGTAAAAGGAGTTTTA
1 TCTTTTTATATATATCAAATTAAAACGATATATATATTTAAATTTGAATAGTAAAAGGAGTTTTA
* *
104150 TCTTTTTGA-ATATTTCAAATTAAAA-GATATTATTATCTATTTAAATTTGAATATTAAAAG
1 TCTTTTT-ATATATATCAAATTAAAACGATA-TA-TA--TATTTAAATTTGAATAGTAAAAG
104210 ATATTTGGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
64 4 0.08
65 24 0.48
66 3 0.06
68 19 0.38
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.46
Consensus pattern (65 bp):
TCTTTTTATATATATCAAATTAAAACGATATATATATTTAAATTTGAATAGTAAAAGGAGTTTTA
Found at i:104334 original size:16 final size:17
Alignment explanation
Indices: 104313--104346 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
104303 ACAACTTTTC
104313 TTCTCTTGA-AAAATAT
1 TTCTCTTGAGAAAATAT
*
104329 TTCTCTTTAGAAAATAT
1 TTCTCTTGAGAAAATAT
104346 T
1 T
104347 CTTTTTGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (17 bp):
TTCTCTTGAGAAAATAT
Found at i:115871 original size:38 final size:38
Alignment explanation
Indices: 115780--115864 Score: 170
Period size: 38 Copynumber: 2.2 Consensus size: 38
115770 TATAAATGCT
115780 AAAAATAATCCAAATTAAATTACAAAAGTTAATTCTGA
1 AAAAATAATCCAAATTAAATTACAAAAGTTAATTCTGA
115818 AAAAATAATCCAAATTAAATTACAAAAGTTAATTCTGA
1 AAAAATAATCCAAATTAAATTACAAAAGTTAATTCTGA
115856 AAAAATAAT
1 AAAAATAAT
115865 TTAAATTTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.58, C:0.09, G:0.05, T:0.28
Consensus pattern (38 bp):
AAAAATAATCCAAATTAAATTACAAAAGTTAATTCTGA
Found at i:117991 original size:35 final size:36
Alignment explanation
Indices: 117929--118000 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 36
117919 TCTCTGAACC
* * *
117929 AAATCTACACTGCATTTTTTCTGCACTGTTCAAACA
1 AAATATACACTACATTTTTTCTACACTGTTCAAACA
*
117965 AAATATACACTACA-TTTTTCTACACTGTTCGAACA
1 AAATATACACTACATTTTTTCTACACTGTTCAAACA
118000 A
1 A
118001 TGAAAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 20 0.62
36 12 0.38
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.35
Consensus pattern (36 bp):
AAATATACACTACATTTTTTCTACACTGTTCAAACA
Found at i:121060 original size:37 final size:37
Alignment explanation
Indices: 121018--121092 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 37
121008 AAAGAAAGTT
121018 TAAAAGAAGATTCAAAGTGTCA-AAGTCAGCCTTAGGC
1 TAAAAGAAGATTCAAAGTGT-AGAAGTCAGCCTTAGGC
* *
121055 TAAAAGAGGATTCAAAGTGTAGAGGTCAGCCTTAGGC
1 TAAAAGAAGATTCAAAGTGTAGAAGTCAGCCTTAGGC
121092 T
1 T
121093 TTTGGTTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 1 0.03
37 34 0.97
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (37 bp):
TAAAAGAAGATTCAAAGTGTAGAAGTCAGCCTTAGGC
Found at i:122094 original size:24 final size:24
Alignment explanation
Indices: 122050--122095 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
122040 TCGTATAAAT
*
122050 TGCACCGAAGTGCCGAGTAGAATA
1 TGCACCGAAGTGCCGAATAGAATA
122074 TGCACCGAAGTGCC-ACATAGAA
1 TGCACCGAAGTGCCGA-ATAGAA
122096 ATTTTCCCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.35, C:0.24, G:0.26, T:0.15
Consensus pattern (24 bp):
TGCACCGAAGTGCCGAATAGAATA
Found at i:122163 original size:23 final size:23
Alignment explanation
Indices: 122078--122181 Score: 102
Period size: 23 Copynumber: 4.5 Consensus size: 23
122068 AGAATATGCA
*
122078 CCGAAGTG-CCACATAGAAATTTTC
1 CCGAAG-GACCACATAG-AATTGTC
* *
122102 CCGAAGAACCACATAGTATTGTC
1 CCGAAGGACCACATAGAATTGTC
* * ** *
122125 CCGAAAGAACTTATAGTATTGTC
1 CCGAAGGACCACATAGAATTGTC
*
122148 CCGAAGGACCACATAGAATTATC
1 CCGAAGGACCACATAGAATTGTC
122171 CCGAAGGACCA
1 CCGAAGGACCA
122182 TGTCGAACCC
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
23 51 0.78
24 14 0.22
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (23 bp):
CCGAAGGACCACATAGAATTGTC
Found at i:122408 original size:46 final size:45
Alignment explanation
Indices: 122267--122408 Score: 149
Period size: 45 Copynumber: 3.1 Consensus size: 45
122257 TAACATTTCT
**** * *
122267 CATAGCTTATATCACACAGACATATAATCACATAGTTCATTGTCA
1 CATAGCTTATATCACATTTTCATATAATCACATAGGTCAATGTCA
* * * *
122312 CATGGATTATATCACATTTTCATATAATCACATAGGTAAATGCCA
1 CATAGCTTATATCACATTTTCATATAATCACATAGGTCAATGTCA
* * *
122357 CATAGCTTATATCACTTTTTTCATGTAATCACATAGGTCAATATCA
1 CATAGCTTATATCAC-ATTTTCATATAATCACATAGGTCAATGTCA
*
122403 TATAGC
1 CATAGC
122409 ATGAAATATA
Statistics
Matches: 78, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
45 48 0.62
46 30 0.38
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.35
Consensus pattern (45 bp):
CATAGCTTATATCACATTTTCATATAATCACATAGGTCAATGTCA
Found at i:122813 original size:19 final size:19
Alignment explanation
Indices: 122789--122838 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
122779 TCCTCACTAT
122789 AGTATCGATACTATACTTC
1 AGTATCGATACTATACTTC
122808 AGTATCGATACTATACTTC
1 AGTATCGATACTATACTTC
122827 AGTATCGATACT
1 AGTATCGATACT
122839 CATTCTACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (19 bp):
AGTATCGATACTATACTTC
Found at i:127450 original size:23 final size:23
Alignment explanation
Indices: 127388--127451 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
127378 TCGAGGGTCT
*
127388 ACGTGGTCCTTCGGGACAATTCC
1 ACGTGGTCCTTCGGGATAATTCC
* *
127411 ATGTGGTCCTTCAGGATAATTCC
1 ACGTGGTCCTTCGGGATAATTCC
127434 ACGTGGTCCTTCGGGATA
1 ACGTGGTCCTTCGGGATA
127452 TATATGTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.19, C:0.25, G:0.27, T:0.30
Consensus pattern (23 bp):
ACGTGGTCCTTCGGGATAATTCC
Found at i:127597 original size:23 final size:23
Alignment explanation
Indices: 127563--127672 Score: 118
Period size: 23 Copynumber: 4.8 Consensus size: 23
127553 AAATCTTATA
* *
127563 TGGCACTACGGTGCATTTCTACG
1 TGGCACTTCGGTGCAATTCTACG
127586 TGGCACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
*
127609 CGGCACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* *
127632 CGATC-CTT-GG-GACAAATTCTACG
1 TG-GCACTTCGGTG-C-AATTCTACG
*
127655 TGGCACTTCGGTGTAATT
1 TGGCACTTCGGTGCAATT
127673 TATACGAGTT
Statistics
Matches: 74, Mismatches: 7, Indels: 12
0.80 0.08 0.13
Matches are distributed among these distances:
21 1 0.01
22 4 0.05
23 65 0.88
24 3 0.04
25 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.30
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:131648 original size:20 final size:20
Alignment explanation
Indices: 131625--131671 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
131615 TTTCCATATG
131625 AAAGATGAAATTTTAAGGTT
1 AAAGATGAAATTTTAAGGTT
131645 AAAGATGAAATTTTAAGGTT
1 AAAGATGAAATTTTAAGGTT
131665 AAAGATG
1 AAAGATG
131672 TATTGAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (20 bp):
AAAGATGAAATTTTAAGGTT
Found at i:149518 original size:28 final size:28
Alignment explanation
Indices: 149466--149520 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
149456 GAGTAAAGCT
*
149466 TGAAGAAGAGTGAAATGGGTCGTGGGGG
1 TGAAGAAGAGTGAAATGGGTAGTGGGGG
149494 TGAAGAAGAGT-AAACTGTGG-AGTGGGG
1 TGAAGAAGAGTGAAA-TG-GGTAGTGGGG
149521 ATAGGAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 3 0.12
28 19 0.79
29 2 0.08
ACGTcount: A:0.31, C:0.04, G:0.47, T:0.18
Consensus pattern (28 bp):
TGAAGAAGAGTGAAATGGGTAGTGGGGG
Found at i:151576 original size:14 final size:15
Alignment explanation
Indices: 151557--151589 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
151547 TACTAGAGAA
151557 TTTAGAG-AGTTTTT
1 TTTAGAGTAGTTTTT
*
151571 TTTAGAGTTGTTTTT
1 TTTAGAGTAGTTTTT
151586 TTTA
1 TTTA
151590 CCAAGAGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (15 bp):
TTTAGAGTAGTTTTT
Found at i:157886 original size:2 final size:2
Alignment explanation
Indices: 157879--157910 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
157869 TGCACCTTTC
*
157879 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
157911 CCACGCATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:158246 original size:30 final size:30
Alignment explanation
Indices: 158183--158281 Score: 137
Period size: 30 Copynumber: 3.3 Consensus size: 30
158173 AAAAGACCTA
* * *
158183 TCCAGAGGTCACAAAGA-CCCCGGTAACTA
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
158212 TCCAGAGGTCATAAAGATCCTCAGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
158242 TCCAGAGGTCATAAAAATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
158272 TCCATAGGTC
1 TCCAGAGGTC
158282 CCGAAGAACC
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
29 16 0.26
30 46 0.74
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (30 bp):
TCCAGAGGTCATAAAGATCCTCGGTAACTG
Found at i:158305 original size:31 final size:31
Alignment explanation
Indices: 158267--158331 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
158257 AATCCTCGGT
*
158267 AACTGTCCATAGGTCCCG-AAGAACCTAGGTA
1 AACTGTCCATAGGTCCCGAAAG-ACATAGGTA
* *
158298 AACTGTCCATATGTCTCGAAAGACATAGGTA
1 AACTGTCCATAGGTCCCGAAAGACATAGGTA
158329 AAC
1 AAC
158332 CCTCGACTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 27 0.90
32 3 0.10
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (31 bp):
AACTGTCCATAGGTCCCGAAAGACATAGGTA
Found at i:159172 original size:64 final size:64
Alignment explanation
Indices: 159067--159287 Score: 243
Period size: 64 Copynumber: 3.5 Consensus size: 64
159057 TAATGAAGGT
* * * ** *
159067 ATGCATCGATGCACTACTGATGCATCGGTGCA-TAAAATGCATTCGATGTTTGTTTATTACTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACT-AATTGCATTCGATGTTTCCTTATTAATGGG
*
159131 ATGCATCGATGCA-TGCCTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGGG
1 ATGCATCGATGCACT-ACTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGGG
* * ** **
159195 ATGCATCGATGCACTACTTATGGATCGATGCACAAATTGCATTCGATGTATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCACTAATTGCATTCGATGT-TTCCTTATTAATGGG
**
159258 AGTGCATCGATGCACTACCAATGCATCGAT
1 A-TGCATCGATGCACTACTTATGCATCGAT
159288 ACACATTCAA
Statistics
Matches: 135, Mismatches: 17, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
63 3 0.02
64 126 0.93
65 6 0.04
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGGG
Found at i:161106 original size:37 final size:38
Alignment explanation
Indices: 161065--161169 Score: 133
Period size: 37 Copynumber: 2.8 Consensus size: 38
161055 GTGCTTGTGG
* * * *
161065 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTT-T
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAAATTAT
*
161102 ATCCTATTTTTAGGAGTTTGAATCCTAGCA-AAATTAT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAAATTAT
**
161139 ATTATATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
161170 GACGAAAAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
36 4 0.07
37 54 0.93
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.42
Consensus pattern (38 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAAATTAT
Found at i:162218 original size:106 final size:105
Alignment explanation
Indices: 161900--163063 Score: 1658
Period size: 106 Copynumber: 11.0 Consensus size: 105
161890 GTATTGTTCC
* *** *
161900 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCT-GAAATTGAAAATTGTTTGTTGACA
* * * * *
161964 ACCAACCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
64 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
162006 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-TG-AAA-T-TTTGTTGACAAT
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAAATTGTTTGTTGACAAC
* *** * *
162066 CAACTACCCCTTCGTCGTGAAGTTGAGCTTGTGTTGTCTTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * *
162107 G-GTCCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGAAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GAAAATTGTTTGTTGACAA
*
162171 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
162212 GAGTCCAATATCCTACGTTGTGAAGTTGAAACTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GAAAATTGTTTGTTGACAA
162277 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
162318 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTATGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGA-AAATTGTTTGTTGACAA
*
162383 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTATCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
162424 GAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GAAAATTGTTTGTTGACAA
*
162489 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
162530 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GAAAATTGTTTGTTGACAA
*
162595 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
162636 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGA-AAATTGTTTGTTGACAA
*
162701 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
162742 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGA-AAATTGTTTGTTGACAA
*
162807 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
162848 GAGTCCAATATCCTTCGCTGTGAAGTTGACATTTGCTCTGAAATTGAGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGA-AAATTGTTTGTTGACAA
* *
162913 CCAACGGTCCATTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
162954 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTTGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGA-AAATTGTTTGTTGACAA
* * * * *
163019 CCAACGGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTT
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
163060 GAGT
1 GAGT
163064 GGCACGATAT
Statistics
Matches: 972, Mismatches: 74, Indels: 24
0.91 0.07 0.02
Matches are distributed among these distances:
100 79 0.08
101 5 0.01
102 4 0.00
103 2 0.00
104 4 0.00
105 6 0.01
106 870 0.90
107 2 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAAATTGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:162532 original size:318 final size:318
Alignment explanation
Indices: 161900--163063 Score: 1838
Period size: 318 Copynumber: 3.7 Consensus size: 318
161890 GTATTGTTCC
* * * ** *
161900 GAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* * * *
161965 CCAACCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAA
66 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
* * ***
162030 GTTGAAATTGACTCTG-AA-TGA-AA--T-TTTGTTGACAATCAACTACCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGT
* * * *
162089 TGAGCTTGTGTTGTCTTGG-GTCCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGG
196 TGAACTTGCGTTGTC-TGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGG
* *
162153 AAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
260 GAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
* *
162212 GAGTCCAATATCCTACGTTGTGAAGTTGAAACTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
*
162277 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
66 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
* *
162342 GTTGAAATTGGCTATGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGT
* *
162407 TGAACTTGCGTTATCTGGAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGG
196 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGG
162472 AAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
261 AAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
*
162530 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* * *
162595 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGTTGTGAA
66 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
162660 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGT
* *
162725 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAAATTGAG
196 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGG
* * *
162790 AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
261 AAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
* * * *
162848 GAGTCCAATATCCTTCGCTGTGAAGTTGACATTTGCTCTGAAATTGAGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
162913 CCAACGGTCCATTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
66 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
* * *
162978 GTTGAAATTTGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAACGGTCCCTTCATTGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGT
* *
163043 TGAACTTGTGTTGTCTTGAGT
196 TGAACTTGCGTTGTCTGGAGT
163064 GGCACGATAT
Statistics
Matches: 791, Mismatches: 54, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
312 132 0.17
313 2 0.00
314 3 0.00
315 2 0.00
317 4 0.01
318 648 0.82
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (318 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAA
GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGT
TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGG
AAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
Found at i:163893 original size:22 final size:22
Alignment explanation
Indices: 163867--163943 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
163857 TTATGTTTGG
163867 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
163889 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
* *
163911 TCATAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
163933 TCAATGGTTTG
1 TCAAAGGTTTG
163944 ATGGGGTAGC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.21, C:0.12, G:0.27, T:0.40
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:164641 original size:172 final size:173
Alignment explanation
Indices: 164339--164685 Score: 583
Period size: 172 Copynumber: 2.0 Consensus size: 173
164329 TAAATAGGCC
*
164339 CAAACAAGTGTTTCAGGGTGTTGAACCAAAGATCAATTCATTCTGATGCCTTCAATCATGTCCTG
1 CAAACAAGTGTTTCAGGGTGTTGAACCAAAGATCAATTCATTATGATGCCTTCAA-CA-GTCCTG
*
164404 CTCAAAATGTCTCTCTCTTGATGCTCTATGATCTTCGAGTGAAGTGATTCAGTGATTCAGGAATG
64 CTCAAAATGTCTCTCTCTTGATGCTATATGATCTTCGAGTGAAGTGATTCAGTGATTCAGGAATG
164469 ATTGTGCTTGATCAATCTCATAGTTTGAAGCTTGATGTGCCATTT
129 ATTGTGCTTGATCAATCTCATAGTTTGAAGCTTGATGTGCCATTT
* *
164514 CAAACAAGTGTTTCAGGGTGTTGAACCAAGGATCAATTCATTATGATGTCTTC-A-A-TCCTGCT
1 CAAACAAGTGTTTCAGGGTGTTGAACCAAAGATCAATTCATTATGATGCCTTCAACAGTCCTGCT
*
164576 CAAAATGTTTCTCTCTCTTGATGCTATATGATCTTCGAGTGAAGTGATTCAGTGATTCGGGAATG
66 CAAAATG--TCTCTCTCTTGATGCTATATGATCTTCGAGTGAAGTGATTCAGTGATTCAGGAATG
*
164641 ATTGTGCTTGATCAATCTTATAGTTTGAAGCTTGATGTGCCATTT
129 ATTGTGCTTGATCAATCTCATAGTTTGAAGCTTGATGTGCCATTT
164686 TTTAGGGAAT
Statistics
Matches: 164, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
170 14 0.09
172 99 0.60
174 1 0.01
175 50 0.30
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (173 bp):
CAAACAAGTGTTTCAGGGTGTTGAACCAAAGATCAATTCATTATGATGCCTTCAACAGTCCTGCT
CAAAATGTCTCTCTCTTGATGCTATATGATCTTCGAGTGAAGTGATTCAGTGATTCAGGAATGAT
TGTGCTTGATCAATCTCATAGTTTGAAGCTTGATGTGCCATTT
Found at i:168262 original size:19 final size:19
Alignment explanation
Indices: 168229--168265 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
168219 TGCAGATGAT
168229 GGAAATAAAATAAAAGAGA
1 GGAAATAAAATAAAAGAGA
168248 GGAAA-AAAATGAAAAGAG
1 GGAAATAAAAT-AAAAGAG
168266 TTAGTAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (19 bp):
GGAAATAAAATAAAAGAGA
Found at i:172263 original size:2 final size:2
Alignment explanation
Indices: 172256--172291 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
172246 TGCACCTTTC
*
172256 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
172292 CCACCACACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:172630 original size:30 final size:30
Alignment explanation
Indices: 172567--172665 Score: 137
Period size: 30 Copynumber: 3.3 Consensus size: 30
172557 GAAAGACCTA
* * * *
172567 TCCAAAGGTCACAAAGA-CCCCGGTAACTA
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
172596 TCCAGAGGTCATAAAGATCCTCAGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
172626 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
172656 TCCATAGGTC
1 TCCAGAGGTC
172666 CCGAAGAACC
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
29 15 0.24
30 47 0.76
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (30 bp):
TCCAGAGGTCATAAAGATCCTCGGTAACTG
Found at i:172682 original size:30 final size:30
Alignment explanation
Indices: 172588--172701 Score: 86
Period size: 30 Copynumber: 3.8 Consensus size: 30
172578 CAAAGACCCC
* * ** *
172588 GGTAACTATCCAGAGGTCATAAAGATCCTCA
1 GGTAACTGTCCATAGGTCACGAAGAACCT-A
* ** * *
172619 -GTAACTGTCCAGAGGTCATAAAGATCCTC
1 GGTAACTGTCCATAGGTCACGAAGAACCTA
*
172648 GGTAACTGTCCATAGGTCCCGAAGAACCTA
1 GGTAACTGTCCATAGGTCACGAAGAACCTA
* *
172678 GGTAAACTGTCCATATGTCTCGAA
1 GGT-AACTGTCCATAGGTCACGAA
172702 AGACATAGGT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
30 53 0.75
31 18 0.25
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (30 bp):
GGTAACTGTCCATAGGTCACGAAGAACCTA
Found at i:172689 original size:31 final size:31
Alignment explanation
Indices: 172651--172715 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
172641 GATCCTCGGT
*
172651 AACTGTCCATAGGTCCCG-AAGAACCTAGGTA
1 AACTGTCCATAGGTCCCGAAAG-ACATAGGTA
* *
172682 AACTGTCCATATGTCTCGAAAGACATAGGTA
1 AACTGTCCATAGGTCCCGAAAGACATAGGTA
172713 AAC
1 AAC
172716 CCTCGACTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 27 0.90
32 3 0.10
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (31 bp):
AACTGTCCATAGGTCCCGAAAGACATAGGTA
Found at i:173556 original size:64 final size:64
Alignment explanation
Indices: 173449--173669 Score: 236
Period size: 64 Copynumber: 3.5 Consensus size: 64
173439 TAATGAAGGT
* * * * ** *
173449 ATGCATCGATGTACTACTAATGCATCGGTGCA-TAAAATGCATTCGATGTTTGTTTATTACTGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACT-AATTGCATTCGATGTTTCCTTATTAATGGG
* *
173513 ATGCATTGATGCA-TGCCTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGGG
1 ATGCATCGATGCACT-ACTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGGG
* **
173577 ATGCATCGATGCACTACTTATGCATCGATGCACGAATTGCATTCGATGTTT--TTATTTTAA-AA
1 ATGCATCGATGCACTACTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTA--TTAATGG
173639 G
64 G
**
173640 AGTGCATCGATGCACTACCAATGCATCGAT
1 A-TGCATCGATGCACTACTTATGCATCGAT
173670 ACACCTTCAA
Statistics
Matches: 135, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
62 3 0.02
63 3 0.02
64 127 0.94
65 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGGG
Found at i:183141 original size:51 final size:51
Alignment explanation
Indices: 183080--183182 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
183070 GAACCTGAAA
*
183080 TCCTACTTTTAAGTGTTTTAATCCGAAAATAATACTAATATATTTGTTATG
1 TCCTAATTTTAAGTGTTTTAATCCGAAAATAATACTAATATATTTGTTATG
183131 TCCTAATTTTAAGTGTTTTAATCCGAAAATAATACTAATATATTTGTTATG
1 TCCTAATTTTAAGTGTTTTAATCCGAAAATAATACTAATATATTTGTTATG
183182 T
1 T
183183 TTGTTGTGGG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.46
Consensus pattern (51 bp):
TCCTAATTTTAAGTGTTTTAATCCGAAAATAATACTAATATATTTGTTATG
Found at i:183587 original size:15 final size:13
Alignment explanation
Indices: 183551--183589 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 13
183541 AGTTGAATGT
183551 ATTATATAATAAA
1 ATTATATAATAAA
183564 ATT-TATAATATAA
1 ATTATATAATA-AA
183577 ATATATATAATAA
1 AT-TATATAATAA
183590 TGTGGAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 7 0.30
13 7 0.30
14 2 0.09
15 7 0.30
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
ATTATATAATAAA
Found at i:184253 original size:106 final size:106
Alignment explanation
Indices: 183871--184638 Score: 1237
Period size: 106 Copynumber: 7.3 Consensus size: 106
183861 GCCAAAGATA
*
183871 CTTCGTTGTGAAGCTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
* *
183936 TCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGCCCAATATC
66 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
* *
183977 CTTTGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTG-TTGTTGACAACCAGCGGTCCCT
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
* *
184041 TCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCC-A-GT-
66 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
* * * * *
184079 CTTTGATGTGAAGTTGAAATTGGCTATGCAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCT
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
*
184144 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCGATATC
66 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
* *
184185 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCT
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
*
184250 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCTAATATC
66 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
* *
184291 CTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCAGTCCCT
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
184356 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
66 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
* *
184397 CTTCGTTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGTGGTCCCT
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
184462 TCGTCGTGAAGTTGAACTTGCGTTGTCT-GAGTCCAATATC
66 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
* * *
184502 CTTCG-TGTGAAGTTAAAATTGGCTCTGAAATTGGGAAGTTG-TTGTTGACAACCAGTGGTCCCT
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
*
184565 TCGTCGTGAAGTTGAACTTGCATTGTCT-GAGTCCAATATC
66 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
* * *
184605 CTTCGCTGTGAAGTTAAAATTGGCTCCGAAATTG
1 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
184639 TTTGTTGACA
Statistics
Matches: 624, Mismatches: 33, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
102 38 0.06
103 121 0.19
104 65 0.10
105 73 0.12
106 327 0.52
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (106 bp):
CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCT
TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
Found at i:195708 original size:101 final size:99
Alignment explanation
Indices: 195530--195727 Score: 378
Period size: 101 Copynumber: 2.0 Consensus size: 99
195520 TCCCCAGCAG
195530 AGTCGCCAAGCTGTCGCAACCGTCTTTCGGTTGGGCCCCGAAATTGGGCTTGACTTGAAAAATAT
1 AGTCGCCAAGCTGTCGCAACCGTCTTTCGGTTGGGCCCCGAAATTGGGCTTGACTTGAAAAATAT
195595 GGATTGGAGTCACCACCGATCATTTATTTAAAGC
66 GGATTGGAGTCACCACCGATCATTTATTTAAAGC
195629 AGTCGCCAAGCTGTCGCAACCCGTCTTTCGGTTGGGCCCCGAAATTGGGCTTCGACTTGAAAAAT
1 AGTCGCCAAGCTGTCGCAA-CCGTCTTTCGGTTGGGCCCCGAAATTGGGCTT-GACTTGAAAAAT
195694 ATGGATTGGAGTCACCACCGATCATTTATTTAAA
64 ATGGATTGGAGTCACCACCGATCATTTATTTAAA
195728 AATAAATAGG
Statistics
Matches: 97, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
99 19 0.20
100 32 0.33
101 46 0.47
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (99 bp):
AGTCGCCAAGCTGTCGCAACCGTCTTTCGGTTGGGCCCCGAAATTGGGCTTGACTTGAAAAATAT
GGATTGGAGTCACCACCGATCATTTATTTAAAGC
Found at i:196245 original size:18 final size:17
Alignment explanation
Indices: 196222--196270 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
196212 GTATTGAAAA
196222 AATAAATAAATAAATAGC
1 AATAAATAAATAAATA-C
* * *
196240 AATAAATATATATATAT
1 AATAAATAAATAAATAC
196257 AATAAAATAAATAA
1 AAT-AAATAAATAA
196271 TAATGAATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 3 0.12
18 22 0.88
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
AATAAATAAATAAATAC
Found at i:196246 original size:22 final size:22
Alignment explanation
Indices: 196221--196270 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
196211 AGTATTGAAA
*
196221 AAATAAATAAATA-AATAGCAAT
1 AAATAAATAAATATAATA-AAAT
* *
196243 AAATATATATATATAATAAAAT
1 AAATAAATAAATATAATAAAAT
196265 AAATAA
1 AAATAA
196271 TAATGAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (22 bp):
AAATAAATAAATATAATAAAAT
Found at i:197758 original size:23 final size:23
Alignment explanation
Indices: 197732--197809 Score: 102
Period size: 23 Copynumber: 3.3 Consensus size: 23
197722 CACCACAGCT
197732 CATATAATTGCACCGAAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
*
197755 CATATAATTGCACCGGAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
* * *
197778 CGTAGAATTGCACCGTAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
*
197801 TATAATAAT
1 CAT-ATAAT
197810 GTCCATAAGG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
23 43 0.91
24 4 0.09
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.24
Consensus pattern (23 bp):
CATATAATTGCACCGAAGTGCCA
Found at i:197987 original size:101 final size:101
Alignment explanation
Indices: 197816--198029 Score: 360
Period size: 101 Copynumber: 2.1 Consensus size: 101
197806 TAATGTCCAT
* *
197816 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
197881 GACTTCACACATGTTCC-AA-AATACATATATGTCCCG
66 AACTTCACACATGTTCCAAAGAATAC--ATATGTCCCG
*
197917 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
197982 AACTTCACACATGTTCCAAAGAATACATATGTCCCG
66 AACTTCACACATGTTCCAAAGAATACATATGTCCCG
198018 AAGGACCACATA
1 AAGGACCACATA
198030 GACCCTCGAC
Statistics
Matches: 107, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
101 100 0.93
102 2 0.02
103 5 0.05
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (101 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
AACTTCACACATGTTCCAAAGAATACATATGTCCCG
Found at i:198963 original size:64 final size:63
Alignment explanation
Indices: 198811--198972 Score: 157
Period size: 64 Copynumber: 2.5 Consensus size: 63
198801 TTCCCTATCG
* ** * ** *
198811 GTGCATCGATGCACTACCTGTGCATCGGTGCATAAAATACATTCAATGTTTGTTTATTACTGG
1 GTGCATCGATGCACTACCTGTGCATCGATGCACCAAATACATTCAATGTTTGTTGATTAAAGA
* * * * *
198874 GATGCATCGATGCA-TGCCTTATGCATCGATGCACCAATTGCATTCGATGTTT-TTAGATTAAAA
1 G-TGCATCGATGCACTACC-TGTGCATCGATGCACCAAATACATTCAATGTTTGTT-GATT-AAA
198937 GA
62 GA
*
198939 GTGCATCGATGCACTACCTGTGCATCGATACACC
1 GTGCATCGATGCACTACCTGTGCATCGATGCACC
198973 TTCAAACAAT
Statistics
Matches: 79, Mismatches: 15, Indels: 9
0.77 0.15 0.09
Matches are distributed among these distances:
63 6 0.08
64 67 0.85
65 6 0.08
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCACTACCTGTGCATCGATGCACCAAATACATTCAATGTTTGTTGATTAAAGA
Found at i:203372 original size:23 final size:23
Alignment explanation
Indices: 203339--203415 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
203329 CGCCACAGCT
203339 CATAT-ATTGCACCGAAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
* *
203361 CATATAATTGCACCGGAGTGCCG
1 CATATAATTGCACCGAAGTGCCA
** * *
203384 TGTAGAATTGCACCGTAGTGCCA
1 CATATAATTGCACCGAAGTGCCA
*
203407 TATAATAAT
1 CAT-ATAAT
203416 GTCCATAAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 5 0.11
23 35 0.80
24 4 0.09
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (23 bp):
CATATAATTGCACCGAAGTGCCA
Found at i:203593 original size:103 final size:101
Alignment explanation
Indices: 203422--203637 Score: 351
Period size: 103 Copynumber: 2.1 Consensus size: 101
203412 TAATGTCCAT
* * *
203422 AAGGACCACATATCATTCTTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
203487 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATA--TCCCA
* * *
203525 AATGACCACATATCATTCCTTAATAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
203590 GACTTCACACATGTTCCAAAGAATACATATATCCCA
66 GACTTCACACATGTTCCAAAGAATACATATATCCCA
203626 AAGGACCACATA
1 AAGGACCACATA
203638 GACCCTCGAC
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
101 15 0.14
103 90 0.86
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.27
Consensus pattern (101 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATCCCA
Found at i:208792 original size:3 final size:3
Alignment explanation
Indices: 208781--208832 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
208771 TTTTTTTCCG
**
208781 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TCG TTA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
208827 ATA TTA
1 TTA TTA
208833 CATTTTACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 4 0.10
3 37 0.90
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:211425 original size:22 final size:22
Alignment explanation
Indices: 211400--211443 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
211390 TCAAACGATG
*
211400 CAATGTGTGTTATTTTAAGTGA
1 CAATGTATGTTATTTTAAGTGA
* * *
211422 CAATTTATTTTATTTTATGTGA
1 CAATGTATGTTATTTTAAGTGA
211444 ATGTAAATTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (22 bp):
CAATGTATGTTATTTTAAGTGA
Found at i:212995 original size:31 final size:32
Alignment explanation
Indices: 212959--213020 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
212949 ATTTTACATG
212959 TACTAACTTATTT-TTCTCTTTTGTTTGTGTA
1 TACTAACTTATTTCTTCTCTTTTGTTTGTGTA
212990 TACTAACTTATTTCTTCTCTTTTGTTTGTGT
1 TACTAACTTATTTCTTCTCTTTTGTTTGTGT
213021 CATTTTGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.43
32 17 0.57
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.61
Consensus pattern (32 bp):
TACTAACTTATTTCTTCTCTTTTGTTTGTGTA
Found at i:214038 original size:22 final size:23
Alignment explanation
Indices: 213995--214039 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
213985 AGTGCACCAT
*
213995 TTCCATCTAAGAAGCTCCAGACA
1 TTCCATCTAAGAAGCTCAAGACA
214018 TTCCA-CTAAGAA-CTGCAAGACA
1 TTCCATCTAAGAAGCT-CAAGACA
214040 CTAAAGCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 13 0.65
23 5 0.25
ACGTcount: A:0.38, C:0.29, G:0.13, T:0.20
Consensus pattern (23 bp):
TTCCATCTAAGAAGCTCAAGACA
Found at i:215064 original size:25 final size:25
Alignment explanation
Indices: 215035--215102 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
215025 GACGCAGAGT
215035 GCAAAGATCAAACCAAAGAAAA-AAAA
1 GCAAAGATCAAA-CAAA-AAAATAAAA
* *
215061 -CAAAGAGCAAAGAAAAAAATAAAA
1 GCAAAGATCAAACAAAAAAATAAAA
* *
215085 GCAAAAATCAAAGAAAAA
1 GCAAAGATCAAACAAAAA
215103 GCAAAGAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 4 0.11
24 7 0.19
25 25 0.69
ACGTcount: A:0.72, C:0.12, G:0.12, T:0.04
Consensus pattern (25 bp):
GCAAAGATCAAACAAAAAAATAAAA
Found at i:215087 original size:18 final size:18
Alignment explanation
Indices: 215048--215115 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 18
215038 AAGATCAAAC
*
215048 CAAAGAAAAAAAACAAAGAG
1 CAAAGAACAAAAA-AAA-AG
215068 CAAAGAA-AAAAATAAAAG
1 CAAAGAACAAAAA-AAAAG
*
215086 CAAA-AATCAAAGAAAAAG
1 CAAAGAA-CAAAAAAAAAG
215104 CAAAGAACAAAA
1 CAAAGAACAAAA
215116 GAGGACAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 2 0.05
18 19 0.45
19 14 0.33
20 7 0.17
ACGTcount: A:0.75, C:0.10, G:0.12, T:0.03
Consensus pattern (18 bp):
CAAAGAACAAAAAAAAAG
Found at i:216721 original size:36 final size:35
Alignment explanation
Indices: 216666--216803 Score: 152
Period size: 36 Copynumber: 3.9 Consensus size: 35
216656 TTTTGAGAAT
*
216666 TTTAAAACAAATTTTTGTCTCGTTTGAGACAATTTC
1 TTTAAAACAAA-TTTTGTCTCGCTTGAGACAATTTC
* * *
216702 TTTCAAAGCAAATTTTGTCTCGCTTGAAACAGCTTTC
1 TTT-AAAACAAATTTTGTCTCGCTTGAGACA-ATTTC
* * *
216739 -TAAAAACAAATTTTGTCTCGTTTGAGACAAATTC
1 TTTAAAACAAATTTTGTCTCGCTTGAGACAATTTC
* *
216773 TCTTAAAACAAACTTCGTCTCGCTTGAGACA
1 T-TTAAAACAAATTTTGTCTCGCTTGAGACA
216804 TTTTTCCTTT
Statistics
Matches: 84, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
34 3 0.04
35 24 0.29
36 46 0.55
37 11 0.13
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (35 bp):
TTTAAAACAAATTTTGTCTCGCTTGAGACAATTTC
Found at i:216895 original size:105 final size:105
Alignment explanation
Indices: 216770--217015 Score: 304
Period size: 105 Copynumber: 2.4 Consensus size: 105
216760 TTGAGACAAA
* *
216770 TTCTCTTAAAACAAACTTCGTCTCGCTTGAGACATTTTTCCTTTGAGATACAAATTTTGAATTCG
1 TTCTCTTAAAACAAACTTCGTCTCGCTTGAGACATTTTCCCTTTGAGATACAAATTTCGAATTCG
216835 ATTCAC-TTAAAACAAAATTAATCTCACCTTAGATTGTTGT
66 ATTCACATT-AAACAAAATTAATCTCACCTTAGATTGTTGT
* * * * *
216875 TTCTTTTAAAACAAATTTCGTCTCGCTTGAGACCTTTTCCCTTTGAGATCCAAATTTCGAATTTG
1 TTCTCTTAAAACAAACTTCGTCTCGCTTGAGACATTTTCCCTTTGAGATACAAATTTCGAATTCG
* * * *
216940 TTTCACATTAAACAAAGTTGATCTCA-CTTGAGATCG-T-T
66 ATTCACATTAAACAAAATTAATCTCACCTT-AGATTGTTGT
* * * *
216978 TCCTC-AAAAACAAACTTTGTCTCGCTTGAGACAATTTC
1 TTCTCTTAAAACAAACTTCGTCTCGCTTGAGACATTTTC
217016 TCTAAAAACA
Statistics
Matches: 121, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
102 28 0.23
103 4 0.03
104 4 0.03
105 83 0.69
106 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (105 bp):
TTCTCTTAAAACAAACTTCGTCTCGCTTGAGACATTTTCCCTTTGAGATACAAATTTCGAATTCG
ATTCACATTAAACAAAATTAATCTCACCTTAGATTGTTGT
Found at i:217257 original size:20 final size:19
Alignment explanation
Indices: 217219--217257 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
217209 TATTTGAATC
* *
217219 TTTTAAAACGATTTTTTTT
1 TTTTAAAACAATTTCTTTT
217238 TTTTAAAGACAATTTCTTTT
1 TTTTAAA-ACAATTTCTTTT
217258 GAAAAAATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTAAAACAATTTCTTTT
Found at i:217346 original size:81 final size:81
Alignment explanation
Indices: 217249--217507 Score: 371
Period size: 79 Copynumber: 3.2 Consensus size: 81
217239 TTTAAAGACA
217249 ATTTCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTGA
1 ATTTCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTGA
217314 AAAAATCTTTGAGTTT
66 AAAAATCTTTGAGTTT
**
217330 ATTTCTTTTGAAAAAATCTTTGAGTTTGTT-CTTTTG-AAAAATCTTTGAGTTTGTTCCACTTGA
1 ATTTCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTGA
217393 AAAAATCTTTGAGTTT
66 AAAAATCTTTGAGTTT
* * * *
217409 GTTCCTTTTGAATAAAAATCTTGGAGTTTGTTCCTTTTGAATAAAAATCTTTGAG-TTGTTTCTT
1 ATTTCTTTTG-A-AAAAATCTTTGAGTTTGTTCCTTTTG-A-AAAAATCTTTGAGTTTGTTCCTT
*
217473 TTGAAAAAAAATCTTTGAGTCT
62 TTG--AAAAAATCTTTGAGTTT
*
217495 ATTTATTTTGAAA
1 ATTTCTTTTGAAA
217508 CAAAGTTTTG
Statistics
Matches: 158, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
79 49 0.31
80 7 0.04
81 48 0.30
82 6 0.04
84 11 0.07
85 14 0.09
86 23 0.15
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.48
Consensus pattern (81 bp):
ATTTCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTGA
AAAAATCTTTGAGTTT
Found at i:217378 original size:106 final size:110
Alignment explanation
Indices: 217250--217480 Score: 364
Period size: 106 Copynumber: 2.1 Consensus size: 110
217240 TTAAAGACAA
**
217250 TTTCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTGAAAAAATCTTTGAGTTTGTTCCTTTTG-A
1 TTTCTTTTG-AAAAATCTTTGAGTTTGTTCCACTTGAAAAAATCTTTGAGTTTGTTCCTTTTGAA
* *
217314 -AAAAATCTTTGAGTTTATTTCTTTTG-A-AAAAATCTTTGAGTT-
65 TAAAAATCTTGGAGTTTATTCCTTTTGAATAAAAATCTTTGAGTTG
217356 TGTTCTTTTGAAAAATCTTTGAGTTTGTTCCACTTGAAAAAATCTTTGAGTTTGTTCCTTTTGAA
1 T-TTCTTTTGAAAAATCTTTGAGTTTGTTCCACTTGAAAAAATCTTTGAGTTTGTTCCTTTTGAA
*
217421 TAAAAATCTTGGAGTTTGTTCCTTTTGAATAAAAATCTTTGAGTTG
65 TAAAAATCTTGGAGTTTATTCCTTTTGAATAAAAATCTTTGAGTTG
217467 TTTCTTTTGAAAAA
1 TTTCTTTTGAAAAA
217481 AAATCTTTGA
Statistics
Matches: 114, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
106 52 0.46
107 9 0.08
108 23 0.20
109 1 0.01
110 28 0.25
111 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (110 bp):
TTTCTTTTGAAAAATCTTTGAGTTTGTTCCACTTGAAAAAATCTTTGAGTTTGTTCCTTTTGAAT
AAAAATCTTGGAGTTTATTCCTTTTGAATAAAAATCTTTGAGTTG
Found at i:217507 original size:29 final size:27
Alignment explanation
Indices: 217253--217492 Score: 351
Period size: 27 Copynumber: 8.8 Consensus size: 27
217243 AAGACAATTT
217253 CTTTTGAAAAAATCTTTGAGTTTGTTC
1 CTTTTGAAAAAATCTTTGAGTTTGTTC
217280 CTTTTGAAAAAATCTTTGAGTTTGTTC
1 CTTTTGAAAAAATCTTTGAGTTTGTTC
* *
217307 CTTTTGAAAAAATCTTTGAGTTTATTT
1 CTTTTGAAAAAATCTTTGAGTTTGTTC
217334 CTTTTGAAAAAATCTTTGAGTTTGTT-
1 CTTTTGAAAAAATCTTTGAGTTTGTTC
217360 CTTTTG-AAAAATCTTTGAGTTTGTTC
1 CTTTTGAAAAAATCTTTGAGTTTGTTC
**
217386 CACTTGAAAAAATCTTTGAGTTTGTTC
1 CTTTTGAAAAAATCTTTGAGTTTGTTC
*
217413 CTTTTGAATAAAAATCTTGGAGTTTGTTC
1 CTTTTG-A-AAAAATCTTTGAGTTTGTTC
*
217442 CTTTTGAATAAAAATCTTTGAG-TTGTTT
1 CTTTTG-A-AAAAATCTTTGAGTTTGTTC
217470 CTTTTGAAAAAAAATCTTTGAGT
1 CTTTTG--AAAAAATCTTTGAGT
217493 CTATTTATTT
Statistics
Matches: 197, Mismatches: 10, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
25 19 0.10
26 10 0.05
27 101 0.51
28 25 0.13
29 42 0.21
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (27 bp):
CTTTTGAAAAAATCTTTGAGTTTGTTC
Found at i:217583 original size:53 final size:53
Alignment explanation
Indices: 217503--217607 Score: 201
Period size: 53 Copynumber: 2.0 Consensus size: 53
217493 CTATTTATTT
*
217503 TGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCGTGAAAAAATCTTTGAGTC
1 TGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCGTAAAAAAATCTTTGAGTC
217556 TGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCGTAAAAAAATCTTTGAGT
1 TGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCGTAAAAAAATCTTTGAGT
217608 TGTTTCTTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.36
Consensus pattern (53 bp):
TGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCGTAAAAAAATCTTTGAGTC
Found at i:217636 original size:29 final size:30
Alignment explanation
Indices: 217594--217656 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
217584 AATTTCGTAA
*
217594 AAAAATCTTTGAGT-TGTTTCTTTTGAAAC
1 AAAAATCTTTGAGTCTGTTTCTTTGGAAAC
217623 AAAAATCTTTGAGTCTGTTTCTTTGGAAAC
1 AAAAATCTTTGAGTCTGTTTCTTTGGAAAC
217653 AAAA
1 AAAA
217657 TTTTATCTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.40
Consensus pattern (30 bp):
AAAAATCTTTGAGTCTGTTTCTTTGGAAAC
Found at i:217725 original size:37 final size:36
Alignment explanation
Indices: 217640--217710 Score: 99
Period size: 37 Copynumber: 2.0 Consensus size: 36
217630 TTTGAGTCTG
* *
217640 TTTCTTTGGAAACAAAATTTTATCTCTCTTAAGATAA
1 TTTCTTTTGAAACAAAACTTTATCTCTCTT-AGATAA
*
217677 TTTCTTTTGAAACAAAACTTTGTCTCTCTT-GATA
1 TTTCTTTTGAAACAAAACTTTATCTCTCTTAGATA
217711 CATATTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 4 0.13
37 27 0.87
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.45
Consensus pattern (36 bp):
TTTCTTTTGAAACAAAACTTTATCTCTCTTAGATAA
Found at i:217853 original size:100 final size:100
Alignment explanation
Indices: 217623--217854 Score: 251
Period size: 100 Copynumber: 2.3 Consensus size: 100
217613 CTTTTGAAAC
*** **
217623 AAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATTTTATCTCTCTTAAGATAATTTCTTTTGAA
1 AAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATAAAAAATCTCTTAAGATAATTTCTTTTGAA
*
217688 ACAAAACTTTGTCTCTCTTGATACATATTTTATTG
66 ACAAAACTTTGTCTCTCTTGAGACATATTTTATTG
* * * *
217723 AAAAATCTTTGAGTCTGTTTCACTT-AAAACAAAATGAAAAAATCT-TTGAG-TATGTTTC-TTT
1 AAAAATCTTTGAGTCTGTTTC-TTTGGAAACAAAAT-AAAAAATCTCTTAAGATA-ATTTCTTTT
* * *
217784 GATAACAAAATTTTGTCTCTTTTGAGA-A-AGTTTCTGTTG
63 GA-AACAAAACTTTGTCTCTCTTGAGACATA-TTT-TATTG
217823 AAAAATCTTTGAGTCTGTTTCTTTGGAAACAA
1 AAAAATCTTTGAGTCTGTTTCTTTGGAAACAA
217855 CATTCACCAT
Statistics
Matches: 110, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
98 1 0.01
99 13 0.12
100 90 0.82
101 6 0.05
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (100 bp):
AAAAATCTTTGAGTCTGTTTCTTTGGAAACAAAATAAAAAATCTCTTAAGATAATTTCTTTTGAA
ACAAAACTTTGTCTCTCTTGAGACATATTTTATTG
Done.