genome.fa.s795.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000795.1 Hibiscus syriacus cultivar Beakdansim tig00001539_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80259

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1239--1283	19	2.3	18	82	14	54	48	0	8	42	1.34
4923--4994	3	23.7	3	83	8	92	61	0	0	38	0.96
5909--5985	22	3.5	22	96	0	145	40	14	11	33	1.82
10675--10730	10	5.4	10	84	16	60	1	7	3	87	0.72
10677--10729	16	3.3	16	86	0	70	1	7	3	86	0.75
10669--10745	25	3.1	24	75	12	57	1	14	2	81	0.86
17777--17839	3	20.7	3	84	9	83	61	0	0	38	0.96
18170--18246	31	2.5	31	95	4	138	44	9	18	28	1.80
20989--21033	20	2.3	19	85	7	63	77	6	4	11	1.09
21418--21481	30	2.3	29	78	19	73	64	0	0	35	0.94
21779--21823	18	2.5	17	85	7	63	40	0	2	57	1.11
22167--22236	29	2.4	29	85	0	95	38	7	1	52	1.38
22137--22274	30	4.7	29	80	3	150	36	7	1	54	1.37
22298--22346	26	1.9	25	87	4	71	59	0	2	38	1.09
22581--22629	21	2.4	19	78	15	53	34	6	0	59	1.22
26646--26710	24	2.7	24	82	2	85	33	9	1	55	1.41
26662--26705	12	3.7	12	75	0	52	31	9	2	56	1.43
34413--34528	21	5.6	21	69	10	60	32	27	18	21	1.96
34516--34688	20	8.6	20	84	3	222	34	26	20	19	1.96
35066--35138	33	2.2	33	92	2	121	12	21	17	47	1.80
35218--35324	21	5.6	20	73	17	102	46	18	21	13	1.83
35279--35335	14	3.7	14	75	20	60	43	22	24	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35272--35351	33	2.4	33	95	0	142	47	22	21	8	1.78
35347--35474	19	7.1	19	71	19	87	10	25	18	45	1.82
35369--35425	14	3.7	14	75	20	60	8	24	22	43	1.81
35352--35474	33	3.5	33	88	10	165	10	24	18	46	1.81
35410--35474	21	3.1	21	82	4	96	10	26	15	47	1.78
37159--37473	93	3.4	93	98	0	605	22	13	18	45	1.85
37603--37661	19	3.4	19	77	22	83	47	30	15	6	1.71
37571--37661	33	2.7	33	91	1	137	46	28	16	8	1.77
37587--37645	14	3.9	14	74	20	55	47	27	18	6	1.74
37657--37829	19	9.6	19	76	12	159	10	20	23	45	1.81
37679--37735	14	3.7	14	75	20	51	10	22	22	43	1.84
37657--37829	33	4.8	38	80	8	168	10	20	23	45	1.81
38280--38346	21	3.2	21	66	6	55	23	35	20	19	1.95
39751--39786	14	2.6	14	95	0	63	33	0	22	44	1.53
39899--39945	20	2.4	20	96	3	87	46	17	21	14	1.83
39954--40162	19	11.7	19	79	16	250	14	21	18	45	1.84
39954--40162	72	2.9	71	85	4	269	14	21	18	45	1.84
40035--40176	33	4.1	33	82	10	194	13	21	18	47	1.82
39960--40176	105	2.1	103	88	10	325	13	21	18	46	1.83
42461--42485	12	2.1	12	100	0	50	0	28	0	72	0.86
42660--42706	24	2.0	24	87	8	69	38	21	14	25	1.92
43399--43627	20	11.4	20	85	1	235	19	17	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43595--43692	21	4.8	20	75	10	81	21	19	21	37	1.94
43595--43693	42	2.4	43	77	11	100	21	19	22	37	1.94
52420--52858	217	2.0	220	97	1	830	39	15	11	33	1.83
56294--56323	5	6.0	5	96	0	51	16	60	0	23	1.36
57559--57602	23	1.9	23	86	9	63	56	0	6	36	1.26
58007--58288	2	144.5	2	73	12	221	44	3	5	45	1.45
58294--58377	22	3.8	22	78	13	91	29	3	22	44	1.70
58313--58375	4	16.8	4	84	12	80	28	1	23	46	1.62
58313--58405	45	2.1	44	83	2	114	32	5	17	45	1.71
58419--58518	35	2.9	34	76	15	100	52	3	5	40	1.39
68340--68397	12	4.8	12	78	0	62	53	18	13	13	1.73
73048--73086	21	1.9	21	94	5	71	58	0	0	41	0.98
78957--78999	21	2.0	21	90	0	68	37	16	16	30	1.91

Tables:   1

The End!