genome.fa.s7955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007955.1 Hibiscus syriacus cultivar Beakdansim tig00110382_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136692

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--438	196	2.2	195	94	4	783	34	15	14	35	1.88
519--582	19	3.4	19	95	0	110	56	9	3	31	1.47
2368--2433	33	2.0	33	87	0	96	24	45	1	28	1.62
4721--4768	20	2.3	20	78	3	60	18	16	8	56	1.65
4885--4931	20	2.3	20	89	10	78	17	17	10	55	1.69
4996--5442	228	2.0	227	94	1	781	39	7	8	45	1.61
20222--20362	61	2.3	61	96	0	255	42	8	21	26	1.82
22952--22986	16	2.2	16	90	5	54	51	2	0	45	1.16
22990--23016	13	2.1	13	100	0	54	37	0	0	62	0.95
23324--23394	32	2.2	33	85	7	92	46	2	9	40	1.52
23675--23818	78	1.9	77	85	4	200	38	4	6	49	1.51
24095--24167	20	3.7	20	87	5	112	9	21	23	45	1.81
24091--24192	40	2.5	41	82	4	118	16	20	21	41	1.90
24330--24387	6	10.5	6	94	5	81	31	51	17	0	1.45
24334--24390	5	10.6	5	94	1	60	29	50	19	0	1.47
24872--24904	6	5.5	6	100	0	66	0	15	51	33	1.43
24901--24925	6	4.2	6	100	0	50	32	0	32	36	1.58
24872--24910	18	2.2	18	90	0	60	5	12	48	33	1.63
25018--25070	22	2.4	22	90	0	88	37	26	16	18	1.93
32314--32379	10	5.8	10	71	25	51	13	12	18	56	1.68
32314--32392	24	3.3	23	87	7	113	15	11	16	56	1.66
33470--33506	16	2.3	16	95	0	65	10	5	18	64	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46708--46751	15	2.9	16	76	10	56	13	25	31	29	1.94
51564--51629	30	2.2	30	88	0	96	10	30	24	34	1.89
52597--52623	14	1.9	14	100	0	54	48	14	7	29	1.71
52761--52788	14	2.0	14	100	0	56	42	14	14	28	1.84
52443--52817	164	2.3	165	91	1	599	29	22	16	30	1.96
56431--56472	21	2.0	20	86	4	57	38	14	7	40	1.73
61141--61182	21	2.0	20	86	4	57	38	14	7	40	1.73
75146--75206	25	2.4	25	78	10	70	70	0	0	29	0.88
75143--75204	29	2.1	30	87	3	90	72	0	0	27	0.85
75152--75202	8	6.8	8	78	13	54	68	0	0	31	0.90
75152--75206	21	2.9	20	74	20	55	69	0	0	30	0.89
75152--75223	38	1.9	37	85	2	99	66	2	0	30	1.06
75268--75302	10	3.5	10	96	0	61	31	0	34	34	1.58
77038--77094	17	3.5	17	66	20	50	47	0	1	50	1.11
77642--77744	48	2.1	49	83	1	127	27	20	15	36	1.93
77686--77931	60	4.1	60	88	0	348	26	23	13	36	1.92
79548--79592	24	2.0	23	86	8	65	44	0	6	48	1.29
79521--79587	28	2.3	30	80	12	77	46	0	5	47	1.27
79559--79610	24	2.2	24	82	3	61	44	0	3	51	1.19
79688--79748	21	2.9	21	70	7	52	54	0	0	45	1.00
91889--91924	2	18.0	2	100	0	72	50	0	0	50	1.00
92137--92166	13	2.3	13	100	0	60	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92230--92271	15	2.6	16	82	14	50	33	0	0	66	0.92
92238--92299	29	2.2	28	80	8	72	38	1	1	58	1.18
92390--92428	20	2.0	20	85	10	53	46	2	0	51	1.14
92511--92552	8	5.2	8	77	11	50	38	0	0	61	0.96
92497--92610	37	3.1	38	75	23	95	42	2	0	53	1.20
92516--92580	20	3.6	18	75	23	64	44	0	1	53	1.09
92604--92665	32	1.9	34	84	15	87	46	1	3	48	1.28
103375--103442	19	3.5	20	71	16	70	52	11	8	26	1.67
109353--109386	16	2.0	16	88	11	50	38	2	0	58	1.13
114298--114399	30	3.4	30	78	6	118	42	10	11	35	1.77
114284--114399	59	2.0	59	82	3	144	43	9	12	35	1.74
115069--115149	42	1.9	42	84	0	108	46	17	7	28	1.74
125532--125561	15	2.0	15	100	0	60	20	26	20	33	1.97
131413--131449	2	18.5	2	100	0	74	51	0	48	0	1.00
136505--136580	31	2.5	31	88	0	107	28	10	11	48	1.73

Tables:   1

The End!