Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007956.1 Hibiscus syriacus cultivar Beakdansim tig00110383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3102597
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 14
Found at i:220249 original size:20 final size:19
Alignment explanation
Indices: 220224--220265 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
220214 AATAAAGACA
*
220224 TATAAAATTAATAACTAAAT
1 TATAAAAATAATAACT-AAT
*
220244 TATAAAAATAATTACTAAT
1 TATAAAAATAATAACTAAT
220263 TAT
1 TAT
220266 TAATTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
TATAAAAATAATAACTAAT
Found at i:221576 original size:3 final size:3
Alignment explanation
Indices: 221568--221668 Score: 166
Period size: 3 Copynumber: 33.7 Consensus size: 3
221558 TTAATATATT
* * * *
221568 TAA TAA TAA AAA TAA TAA TAA TAA TAT TAA TAA TAA TAT TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
221616 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
221664 TAA TA
1 TAA TA
221669 TGGATAAAAA
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 90 1.00
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:229396 original size:3 final size:3
Alignment explanation
Indices: 229388--229412 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
229378 TTCTCCAATT
229388 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
229413 TGATTTGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:247596 original size:39 final size:38
Alignment explanation
Indices: 247536--247613 Score: 86
Period size: 39 Copynumber: 2.0 Consensus size: 38
247526 TACATAAAAA
* * **
247536 TATTATATTTTTTATTAAAAAACATATAAATGTTAATAT
1 TATTATATTTTTAATTAAAAAAAAT-TAAAAATTAATAT
*
247575 TATTA-ATATTTTAATTTAAAAAAATTAAAAATTAATAT
1 TATTATAT-TTTTAATTAAAAAAAATTAAAAATTAATAT
247613 T
1 T
247614 TAATTGTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
38 14 0.42
39 19 0.58
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (38 bp):
TATTATATTTTTAATTAAAAAAAATTAAAAATTAATAT
Found at i:248268 original size:13 final size:13
Alignment explanation
Indices: 248250--248274 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
248240 ATCTAAATTT
248250 TCGAATCAGATCA
1 TCGAATCAGATCA
248263 TCGAATCAGATC
1 TCGAATCAGATC
248275 TTTTTACACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (13 bp):
TCGAATCAGATCA
Found at i:248583 original size:17 final size:18
Alignment explanation
Indices: 248561--248598 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
248551 TTTTTATTTT
248561 TTTAT-ATTAAAAAATTA
1 TTTATAATTAAAAAATTA
* *
248578 TTTATAATTCATAAATTA
1 TTTATAATTAAAAAATTA
248596 TTT
1 TTT
248599 CATTATAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTATAATTAAAAAATTA
Found at i:248632 original size:39 final size:38
Alignment explanation
Indices: 248589--248678 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 38
248579 TTATAATTCA
* *
248589 TAAATTATTTCATTATAACATTCTAAATTCCTAATTTAT
1 TAAATTATTTCATCATAACATTCTAAATTACTAATTT-T
* * *
248628 TAAATTATTTCATCATAATATTTTAAATTACTACTTTT
1 TAAATTATTTCATCATAACATTCTAAATTACTAATTTT
248666 TAAAATTATTTCA
1 T-AAATTATTTCA
248679 CCCATATCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
38 2 0.04
39 43 0.96
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (38 bp):
TAAATTATTTCATCATAACATTCTAAATTACTAATTTT
Found at i:253885 original size:24 final size:24
Alignment explanation
Indices: 253858--253943 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
253848 CGTTCGTGAA
* *
253858 CGTTCGGTTATGTTTGTTTATGTT
1 CGTTCAGTTATGTTCGTTTATGTT
*
253882 CGTTCGGTTATGTTCGTTTATGTT
1 CGTTCAGTTATGTTCGTTTATGTT
* *
253906 CGTTCAATTATGTTCGTTTATATT
1 CGTTCAGTTATGTTCGTTTATGTT
* *
253930 CATTCATTTATGTT
1 CGTTCAGTTATGTT
253944 TAATCTAATC
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.14, C:0.12, G:0.19, T:0.56
Consensus pattern (24 bp):
CGTTCAGTTATGTTCGTTTATGTT
Found at i:255039 original size:16 final size:16
Alignment explanation
Indices: 255018--255060 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
255008 GGGTCTCCAA
*
255018 CGTTTATGTTTGTGTT
1 CGTTTATGTTCGTGTT
255034 CGTTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
255050 CGTTTATGTTC
1 CGTTTATGTTC
255061 ATTTATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.07, C:0.12, G:0.23, T:0.58
Consensus pattern (16 bp):
CGTTTATGTTCGTGTT
Found at i:255151 original size:16 final size:16
Alignment explanation
Indices: 255130--255162 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
255120 CAAAAAAAAT
255130 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
255146 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
255162 T
1 T
255163 TTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:256086 original size:14 final size:16
Alignment explanation
Indices: 256053--256087 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
256043 AAAAAAAATC
256053 TATAATTAGAATTTTA
1 TATAATTAGAATTTTA
256069 TATAATTAGAATTTTA
1 TATAATTAGAATTTTA
256085 TAT
1 TAT
256088 GAAGTTCAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (16 bp):
TATAATTAGAATTTTA
Found at i:256393 original size:18 final size:18
Alignment explanation
Indices: 256370--256414 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
256360 AACATTCCCA
* *
256370 ATAATCTTATTCCCGCCG
1 ATAATCTTATTCACACCG
* *
256388 ATAATCTTTTTCACACTG
1 ATAATCTTATTCACACCG
256406 ATAATCTTA
1 ATAATCTTA
256415 CATTCCGTGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (18 bp):
ATAATCTTATTCACACCG
Found at i:257663 original size:25 final size:26
Alignment explanation
Indices: 257622--257671 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
257612 TTTAACATTA
*
257622 TTTTATCTACTTTTATGGCACAATTG
1 TTTTATCTACTTTTATGACACAATTG
257648 TTTT-TCTA-TTTCTATGACACAATT
1 TTTTATCTACTTT-TATGACACAATT
257672 TTGTATACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 15 0.68
26 4 0.18
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (26 bp):
TTTTATCTACTTTTATGACACAATTG
Found at i:260820 original size:25 final size:25
Alignment explanation
Indices: 260791--260860 Score: 65
Period size: 24 Copynumber: 2.8 Consensus size: 25
260781 AGATTTTGTT
*
260791 TTTTTTATTATATTTGTATT-TAGTAC
1 TTTTTTATT-TATTTGT-TTATAGAAC
* *
260817 TTTTTTATTTAGTTGTTTATTGAAC
1 TTTTTTATTTATTTGTTTATAGAAC
260842 -TTTTTATTGTATTT-TTTAT
1 TTTTTTATT-TATTTGTTTAT
260861 TATTTATCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
24 15 0.39
25 14 0.37
26 9 0.24
ACGTcount: A:0.20, C:0.03, G:0.09, T:0.69
Consensus pattern (25 bp):
TTTTTTATTTATTTGTTTATAGAAC
Found at i:260936 original size:33 final size:33
Alignment explanation
Indices: 260877--260970 Score: 84
Period size: 33 Copynumber: 2.8 Consensus size: 33
260867 TCATTTAATA
* * *
260877 TTTACTTTAATTTGTT-AATATAGTTGGA-TTTAT
1 TTTAATTTATTTTGTTAAAT-TTGTTGGAGTTT-T
260910 TTTAATTTATTTTGTTAAATTTGTTGGAGTTTT
1 TTTAATTTATTTTGTTAAATTTGTTGGAGTTTT
* *
260943 TGCTAATTTATTTTTGCTTAATTTTGTT
1 T-TTAATTTA-TTTTG-TTAAATTTGTT
260971 TACTACCATT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
33 23 0.45
34 13 0.25
35 5 0.10
36 10 0.20
ACGTcount: A:0.22, C:0.03, G:0.13, T:0.62
Consensus pattern (33 bp):
TTTAATTTATTTTGTTAAATTTGTTGGAGTTTT
Found at i:264885 original size:12 final size:12
Alignment explanation
Indices: 264870--268432 Score: 4486
Period size: 12 Copynumber: 298.2 Consensus size: 12
264860 TGGATGGATG
264870 GATAGATAGATA
1 GATAGATAGATA
264882 GATAGATAGATA
1 GATAGATAGATA
264894 GATAGATAGATA
1 GATAGATAGATA
264906 GATAGATAGATA
1 GATAGATAGATA
264918 GATAGATAGATA
1 GATAGATAGATA
264930 GATAGATAGATA
1 GATAGATAGATA
264942 GATAGATAGATA
1 GATAGATAGATA
264954 GATAGATAGATA
1 GATAGATAGATA
264966 GATAGATAGATA
1 GATAGATAGATA
264978 GATAGATAGATA
1 GATAGATAGATA
264990 GATAGATAGATA
1 GATAGATAGATA
265002 GATAGATAGATA
1 GATAGATAGATA
265014 GATAGATAGATA
1 GATAGATAGATA
265026 GATAGATAGATA
1 GATAGATAGATA
265038 GATAGATAGATA
1 GATAGATAGATA
265050 GATAGATAGATA
1 GATAGATAGATA
265062 GAT--ATAGATA
1 GATAGATAGATA
265072 GATAGATAGATA
1 GATAGATAGATA
265084 GATAGATAGATA
1 GATAGATAGATA
265096 GAT--ATAGATA
1 GATAGATAGATA
265106 GATAGATAGATA
1 GATAGATAGATA
265118 GATAGATAGATA
1 GATAGATAGATA
265130 GATAGATAGATA
1 GATAGATAGATA
265142 GATAGATAGATA
1 GATAGATAGATA
265154 GATAGATAGATA
1 GATAGATAGATA
265166 GATAGATAGATA
1 GATAGATAGATA
265178 G--AGATAGATA
1 GATAGATAGATA
265188 GATAGATAGATA
1 GATAGATAGATA
265200 GATAGATAGATA
1 GATAGATAGATA
265212 GATAGATAGATA
1 GATAGATAGATA
265224 GATAGATAGATA
1 GATAGATAGATA
265236 GATAG--AGATA
1 GATAGATAGATA
265246 GATAGATAGATA
1 GATAGATAGATA
265258 GAT--ATAGATA
1 GATAGATAGATA
265268 GATAGATAGATA
1 GATAGATAGATA
265280 GATAGATAGATA
1 GATAGATAGATA
265292 GATAGATAGATA
1 GATAGATAGATA
265304 GATAGATAGATA
1 GATAGATAGATA
265316 GATAGATAGATA
1 GATAGATAGATA
265328 GATAGATAGATA
1 GATAGATAGATA
265340 GATAGATAGATA
1 GATAGATAGATA
265352 GATAGATAGATA
1 GATAGATAGATA
265364 GATAGATAGATA
1 GATAGATAGATA
265376 G--AGATAGATA
1 GATAGATAGATA
265386 GATAGATAGATA
1 GATAGATAGATA
265398 GATAGATAGATA
1 GATAGATAGATA
265410 GATAGATAGATA
1 GATAGATAGATA
265422 GATAGATAGATA
1 GATAGATAGATA
265434 GATAGATAGATA
1 GATAGATAGATA
265446 GATAGATAGATA
1 GATAGATAGATA
265458 GATAGATAGATA
1 GATAGATAGATA
265470 GATAGATAGATA
1 GATAGATAGATA
265482 GATAGATAGATA
1 GATAGATAGATA
265494 GATAGATAGATA
1 GATAGATAGATA
265506 GATAGATAGATA
1 GATAGATAGATA
265518 GATAGATAGATA
1 GATAGATAGATA
265530 GATAGATAGATA
1 GATAGATAGATA
265542 GATAGATAGATA
1 GATAGATAGATA
265554 GATAGATAGATA
1 GATAGATAGATA
265566 GATAGATAGAT-
1 GATAGATAGATA
265577 -ATAGATAGATA
1 GATAGATAGATA
265588 GATAGATAGATA
1 GATAGATAGATA
265600 GATAGATAGATA
1 GATAGATAGATA
265612 GATAGATAGATA
1 GATAGATAGATA
265624 GATAGATAGATA
1 GATAGATAGATA
265636 GATAGATAGATA
1 GATAGATAGATA
265648 GATAGATAGATA
1 GATAGATAGATA
265660 GATAGATAGATA
1 GATAGATAGATA
265672 GATAGATAGATA
1 GATAGATAGATA
265684 GATAGATAGATA
1 GATAGATAGATA
265696 GATAGATAGATA
1 GATAGATAGATA
265708 GATAGATAGATA
1 GATAGATAGATA
265720 GATAGATAGATA
1 GATAGATAGATA
265732 GATAGATAGATA
1 GATAGATAGATA
265744 GATAGATAGATA
1 GATAGATAGATA
265756 GATAGATAGATA
1 GATAGATAGATA
265768 GATAGATAGATA
1 GATAGATAGATA
265780 GATAGATAGATA
1 GATAGATAGATA
265792 GATAGATAGATA
1 GATAGATAGATA
265804 GATAGATAGATA
1 GATAGATAGATA
265816 GATAGATAGATA
1 GATAGATAGATA
265828 GATAGATAGATA
1 GATAGATAGATA
265840 GATAGATAGATA
1 GATAGATAGATA
265852 GATAGATAGATA
1 GATAGATAGATA
265864 GATAGATAGATA
1 GATAGATAGATA
265876 GATAGATAGATA
1 GATAGATAGATA
265888 GATAGATAGATA
1 GATAGATAGATA
265900 GATAGATAGATA
1 GATAGATAGATA
*
265912 GATAGATGGATA
1 GATAGATAGATA
265924 GATAGATAGATA
1 GATAGATAGATA
*
265936 G--AGATGGATA
1 GATAGATAGATA
*
265946 GATGGATAGAT-
1 GATAGATAGATA
* *
265957 GAATGGATAGATG
1 G-ATAGATAGATA
*
265970 GATAGATGGATA
1 GATAGATAGATA
* *
265982 GATGGATAGATG
1 GATAGATAGATA
*
265994 GATAGATGGATA
1 GATAGATAGATA
* *
266006 GATGGATAGATG
1 GATAGATAGATA
*
266018 GATAGATGGATA
1 GATAGATAGATA
* *
266030 GATGGATAGATG
1 GATAGATAGATA
*
266042 GATAGATGGATA
1 GATAGATAGATA
* *
266054 GATGGATAGATG
1 GATAGATAGATA
*
266066 GATAGATGGATA
1 GATAGATAGATA
* *
266078 GATGGATAGATG
1 GATAGATAGATA
*
266090 GATAGATGGATA
1 GATAGATAGATA
* *
266102 GATGGATAGATG
1 GATAGATAGATA
*
266114 GATAGATGGATA
1 GATAGATAGATA
*
266126 GATAGATGGATA
1 GATAGATAGATA
* *
266138 GATGGATAGATG
1 GATAGATAGATA
266150 GATAGATAGATA
1 GATAGATAGATA
* *
266162 GATGGATAGATG
1 GATAGATAGATA
* *
266174 GATAAATGGATA
1 GATAGATAGATA
* *
266186 GATGGATAGATG
1 GATAGATAGATA
*
266198 GATAGATGGATA
1 GATAGATAGATA
* *
266210 GATGGATAGATT
1 GATAGATAGATA
266222 GATAGATAGATA
1 GATAGATAGATA
266234 GATAGATAGATA
1 GATAGATAGATA
266246 GATAGATAGATA
1 GATAGATAGATA
266258 GATAGATAGATA
1 GATAGATAGATA
266270 GATAGATAGATA
1 GATAGATAGATA
266282 GATAGATAGATA
1 GATAGATAGATA
266294 GATAGATAGATA
1 GATAGATAGATA
266306 GATAGATAGATA
1 GATAGATAGATA
266318 GATAGATAGATA
1 GATAGATAGATA
266330 GATAGATAGATA
1 GATAGATAGATA
* *
266342 GATGGATAGATG
1 GATAGATAGATA
*
266354 GATAGATGGATA
1 GATAGATAGATA
266366 GATAGGATAGATA
1 GATA-GATAGATA
266379 GATAGATAGATA
1 GATAGATAGATA
* *
266391 GATGGATAGATT
1 GATAGATAGATA
266403 GATAGATAGATA
1 GATAGATAGATA
* *
266415 GATGGATAGATG
1 GATAGATAGATA
*
266427 GATAGATGGATA
1 GATAGATAGATA
*
266439 GATAGATAGATG
1 GATAGATAGATA
*
266451 GATAGATGGATA
1 GATAGATAGATA
* *
266463 GATGGATAGATG
1 GATAGATAGATA
*
266475 GATAGATGGATA
1 GATAGATAGATA
266487 GATAGATAGATA
1 GATAGATAGATA
266499 GATAGATAGATA
1 GATAGATAGATA
266511 GATAGATAGATA
1 GATAGATAGATA
266523 GATAGATAGATA
1 GATAGATAGATA
266535 GATAGATAGATA
1 GATAGATAGATA
266547 GATAGATAGATA
1 GATAGATAGATA
*
266559 GATAGATATATA
1 GATAGATAGATA
* *
266571 GATGGATAGATG
1 GATAGATAGATA
*
266583 GATAGATGGATA
1 GATAGATAGATA
*
266595 GATAGATGGATA
1 GATAGATAGATA
*
266607 GATAGATGGATA
1 GATAGATAGATA
* *
266619 GATATATGGATA
1 GATAGATAGATA
*
266631 GATAGATGGATA
1 GATAGATAGATA
* *
266643 GATATATGGATA
1 GATAGATAGATA
*
266655 GATAGATGGATA
1 GATAGATAGATA
* *
266667 GATATATGGATA
1 GATAGATAGATA
*
266679 GATAGATGGATA
1 GATAGATAGATA
*
266691 GATAGATGGATA
1 GATAGATAGATA
* *
266703 GGTAGATGGATA
1 GATAGATAGATA
*
266715 GATAGATGGATA
1 GATAGATAGATA
*
266727 GATAGATGGATA
1 GATAGATAGATA
*
266739 GATAGATGGATA
1 GATAGATAGATA
*
266751 GATAGATGGATA
1 GATAGATAGATA
266763 GATAGATAGATA
1 GATAGATAGATA
* *
266775 AATAGATGGATA
1 GATAGATAGATA
*
266787 GATAGATGGATA
1 GATAGATAGATA
*
266799 GATAGATGGATA
1 GATAGATAGATA
*
266811 GATAGATGGATA
1 GATAGATAGATA
266823 GATAGAT-GTATA
1 GATAGATAG-ATA
*
266835 GATAGATGGATA
1 GATAGATAGATA
*
266847 GATAGATGGATA
1 GATAGATAGATA
*
266859 GATAGATGGATA
1 GATAGATAGATA
*
266871 GATAGATGGATA
1 GATAGATAGATA
*
266883 GATAGATGGATA
1 GATAGATAGATA
*
266895 GATAGATGGATA
1 GATAGATAGATA
*
266907 GATAGATGGATA
1 GATAGATAGATA
*
266919 GATAGATGGATA
1 GATAGATAGATA
*
266931 GATAGATGGATA
1 GATAGATAGATA
*
266943 GATAGATGGATA
1 GATAGATAGATA
*
266955 GATAGATGGATA
1 GATAGATAGATA
* *
266967 GATAGATGGATG
1 GATAGATAGATA
*
266979 GATAGATAGATG
1 GATAGATAGATA
*
266991 GATAGATAGATG
1 GATAGATAGATA
* *
267003 GATGGATAGATG
1 GATAGATAGATA
*
267015 GATAGATAGATG
1 GATAGATAGATA
*
267027 GATGGATAGATA
1 GATAGATAGATA
* *
267039 GATGGATGGATA
1 GATAGATAGATA
* * *
267051 GATGGAGAGATG
1 GATAGATAGATA
*
267063 GATAGATGGATA
1 GATAGATAGATA
267075 GATAGATAGATA
1 GATAGATAGATA
*
267087 GATGGATAGATA
1 GATAGATAGATA
* *
267099 GATGGATGGATA
1 GATAGATAGATA
* *
267111 GAT-GAATGGATG
1 GATAG-ATAGATA
* *
267123 GATAGATGGATG
1 GATAGATAGATA
*
267135 GATAGATGGATA
1 GATAGATAGATA
*
267147 GATAGATGGATA
1 GATAGATAGATA
*
267159 GATAGATGGATA
1 GATAGATAGATA
*
267171 GATAGATTGATA
1 GATAGATAGATA
*
267183 GATGGATAGATA
1 GATAGATAGATA
*
267195 GATAGATGGATA
1 GATAGATAGATA
*
267207 GATAGATGGATA
1 GATAGATAGATA
*
267219 GATAGATGGATA
1 GATAGATAGATA
*
267231 GATAGATGGATA
1 GATAGATAGATA
*
267243 GATAGATGGATA
1 GATAGATAGATA
267255 GATAGAT-GTATA
1 GATAGATAG-ATA
267267 GATAGAT-GAATA
1 GATAGATAG-ATA
*
267279 GATAGATGGATA
1 GATAGATAGATA
*
267291 GATAGATGGATA
1 GATAGATAGATA
*
267303 GATAGATGGATA
1 GATAGATAGATA
267315 GATAGATAGATA
1 GATAGATAGATA
* *
267327 GATGGATAGATG
1 GATAGATAGATA
* *
267339 GATAAATAGATG
1 GATAGATAGATA
* *
267351 GATGGATAGATG
1 GATAGATAGATA
*
267363 GATAGATAGATG
1 GATAGATAGATA
* *
267375 GATGGATAGATT
1 GATAGATAGATA
* *
267387 GATAGATGGATG
1 GATAGATAGATA
* *
267399 GATGGATAGATT
1 GATAGATAGATA
*
267411 GATAGATGGATA
1 GATAGATAGATA
*
267423 GATGGATAGATA
1 GATAGATAGATA
*
267435 GATAGATAAATA
1 GATAGATAGATA
* *
267447 GATGGATAGATG
1 GATAGATAGATA
* *
267459 GATGGATGGATA
1 GATAGATAGATA
* * *
267471 GATGGATGGATG
1 GATAGATAGATA
* * *
267483 GATGGATGGATT
1 GATAGATAGATA
* * *
267495 GATGGATGGATG
1 GATAGATAGATA
* * *
267507 GATTGATGGATT
1 GATAGATAGATA
* *
267519 GATGGATAGATG
1 GATAGATAGATA
*
267531 GATAGATGGATA
1 GATAGATAGATA
* *
267543 GATGGATAGATG
1 GATAGATAGATA
*
267555 GATAGATGGATA
1 GATAGATAGATA
*
267567 GATGGATAGATA
1 GATAGATAGATA
267579 GAT-GTATAGATA
1 GATAG-ATAGATA
267591 GAT-GTATAGATA
1 GATAG-ATAGATA
* *
267603 GATGGATAGATG
1 GATAGATAGATA
*
267615 GATAGATGGATA
1 GATAGATAGATA
* **
267627 GATGGATAGACG
1 GATAGATAGATA
* * *
267639 GATGGATAAATG
1 GATAGATAGATA
*
267651 GATAGATAGATG
1 GATAGATAGATA
* *
267663 GATAGGTAGATG
1 GATAGATAGATA
*
267675 GATAGATAGATG
1 GATAGATAGATA
*
267687 GATAGATAGATG
1 GATAGATAGATA
267699 GATAGATAGAT-
1 GATAGATAGATA
*
267710 GAATAGATAGATG
1 G-ATAGATAGATA
*
267723 GATAGATAGATG
1 GATAGATAGATA
*
267735 GATAGATAGATG
1 GATAGATAGATA
*
267747 GATAGATAGATG
1 GATAGATAGATA
*
267759 GATAGATAGATG
1 GATAGATAGATA
*
267771 GATAGATAGATG
1 GATAGATAGATA
* *
267783 GATTGATAGATG
1 GATAGATAGATA
*
267795 GATAGATAGATG
1 GATAGATAGATA
*
267807 GATAGATAGATG
1 GATAGATAGATA
*
267819 GATAGATATATA
1 GATAGATAGATA
* *
267831 GATGGATAGATG
1 GATAGATAGATA
*
267843 GATGGATAGATA
1 GATAGATAGATA
*
267855 GATGGATAGATA
1 GATAGATAGATA
*
267867 GATGGATAGATA
1 GATAGATAGATA
*
267879 GATAGATGGATA
1 GATAGATAGATA
*
267891 GATAGATGGATA
1 GATAGATAGATA
*
267903 GATAGATGGATA
1 GATAGATAGATA
*
267915 GATAGATGGATA
1 GATAGATAGATA
*
267927 GATAGATGGATA
1 GATAGATAGATA
*
267939 GATAGATGGATA
1 GATAGATAGATA
* *
267951 GATAGATGGATG
1 GATAGATAGATA
* *
267963 GAT-GTATGGATG
1 GATAG-ATAGATA
*
267975 GATTGATAGATA
1 GATAGATAGATA
*
267987 GATAGATAGATG
1 GATAGATAGATA
*
267999 GATAGATAGATG
1 GATAGATAGATA
*
268011 GATATATAGATA
1 GATAGATAGATA
268023 GATAGATAGATA
1 GATAGATAGATA
268035 GATAGATAGATA
1 GATAGATAGATA
*
268047 GATAGATAGATG
1 GATAGATAGATA
* * *
268059 GATGGATGGATG
1 GATAGATAGATA
* *
268071 GATAGATGGATT
1 GATAGATAGATA
* * *
268083 GATGGATGGATG
1 GATAGATAGATA
* * *
268095 GATGGATGGATG
1 GATAGATAGATA
* *
268107 GATAGATGGATG
1 GATAGATAGATA
* *
268119 GATAGATGGATG
1 GATAGATAGATA
*
268131 GGTAGAT-GA-A
1 GATAGATAGATA
* *
268141 TGATAGATGGATG
1 -GATAGATAGATA
* *
268154 GATAGATGGATG
1 GATAGATAGATA
* *
268166 GATAGATGGATG
1 GATAGATAGATA
* *
268178 GATAGATGGATG
1 GATAGATAGATA
* *
268190 GATAGATGGATG
1 GATAGATAGATA
* *
268202 GATAGATGGATG
1 GATAGATAGATA
* *
268214 GATAGATGGATG
1 GATAGATAGATA
*
268226 GATAGATAGATG
1 GATAGATAGATA
* *
268238 GATGGATAGATG
1 GATAGATAGATA
268250 GATAGATAGATA
1 GATAGATAGATA
*
268262 GATGGATAGATA
1 GATAGATAGATA
*
268274 GATGGATAGATA
1 GATAGATAGATA
* *
268286 GATGGATGGATA
1 GATAGATAGATA
*
268298 GATGGATAGAT-
1 GATAGATAGATA
*
268309 GAATAGATAGATG
1 G-ATAGATAGATA
* *
268322 GATAAATGGATA
1 GATAGATAGATA
*
268334 GATGGATAGA-A
1 GATAGATAGATA
268345 GGATAGAT-GAATA
1 -GATAGATAG-ATA
* *
268358 GATGGATAGATG
1 GATAGATAGATA
*
268370 GATAGATGGATA
1 GATAGATAGATA
* *
268382 GATGGATAGATG
1 GATAGATAGATA
268394 GATAGATAGATA
1 GATAGATAGATA
* *
268406 GATGGATAGATG
1 GATAGATAGATA
* *
268418 GATAGTTGGATA
1 GATAGATAGATA
268430 GAT
1 GAT
268433 GGATGGATGG
Statistics
Matches: 3252, Mismatches: 259, Indels: 80
0.91 0.07 0.02
Matches are distributed among these distances:
10 79 0.02
11 18 0.01
12 3134 0.96
13 21 0.01
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.26
Consensus pattern (12 bp):
GATAGATAGATA
Found at i:268436 original size:8 final size:8
Alignment explanation
Indices: 264870--268432 Score: 4486
Period size: 8 Copynumber: 447.4 Consensus size: 8
264860 TGGATGGATG
264870 GATAGATA
1 GATAGATA
264878 GATAGATA
1 GATAGATA
264886 GATAGATA
1 GATAGATA
264894 GATAGATA
1 GATAGATA
264902 GATAGATA
1 GATAGATA
264910 GATAGATA
1 GATAGATA
264918 GATAGATA
1 GATAGATA
264926 GATAGATA
1 GATAGATA
264934 GATAGATA
1 GATAGATA
264942 GATAGATA
1 GATAGATA
264950 GATAGATA
1 GATAGATA
264958 GATAGATA
1 GATAGATA
264966 GATAGATA
1 GATAGATA
264974 GATAGATA
1 GATAGATA
264982 GATAGATA
1 GATAGATA
264990 GATAGATA
1 GATAGATA
264998 GATAGATA
1 GATAGATA
265006 GATAGATA
1 GATAGATA
265014 GATAGATA
1 GATAGATA
265022 GATAGATA
1 GATAGATA
265030 GATAGATA
1 GATAGATA
265038 GATAGATA
1 GATAGATA
265046 GATAGATA
1 GATAGATA
265054 GATAGATA
1 GATAGATA
265062 GAT--ATA
1 GATAGATA
265068 GATAGATA
1 GATAGATA
265076 GATAGATA
1 GATAGATA
265084 GATAGATA
1 GATAGATA
265092 GATAGAT-
1 GATAGATA
265099 -ATAGATA
1 GATAGATA
265106 GATAGATA
1 GATAGATA
265114 GATAGATA
1 GATAGATA
265122 GATAGATA
1 GATAGATA
265130 GATAGATA
1 GATAGATA
265138 GATAGATA
1 GATAGATA
265146 GATAGATA
1 GATAGATA
265154 GATAGATA
1 GATAGATA
265162 GATAGATA
1 GATAGATA
265170 GATAGATA
1 GATAGATA
265178 G--AGATA
1 GATAGATA
265184 GATAGATA
1 GATAGATA
265192 GATAGATA
1 GATAGATA
265200 GATAGATA
1 GATAGATA
265208 GATAGATA
1 GATAGATA
265216 GATAGATA
1 GATAGATA
265224 GATAGATA
1 GATAGATA
265232 GATAGATA
1 GATAGATA
265240 G--AGATA
1 GATAGATA
265246 GATAGATA
1 GATAGATA
265254 GATAGAT-
1 GATAGATA
265261 -ATAGATA
1 GATAGATA
265268 GATAGATA
1 GATAGATA
265276 GATAGATA
1 GATAGATA
265284 GATAGATA
1 GATAGATA
265292 GATAGATA
1 GATAGATA
265300 GATAGATA
1 GATAGATA
265308 GATAGATA
1 GATAGATA
265316 GATAGATA
1 GATAGATA
265324 GATAGATA
1 GATAGATA
265332 GATAGATA
1 GATAGATA
265340 GATAGATA
1 GATAGATA
265348 GATAGATA
1 GATAGATA
265356 GATAGATA
1 GATAGATA
265364 GATAGATA
1 GATAGATA
265372 GATAG--A
1 GATAGATA
265378 GATAGATA
1 GATAGATA
265386 GATAGATA
1 GATAGATA
265394 GATAGATA
1 GATAGATA
265402 GATAGATA
1 GATAGATA
265410 GATAGATA
1 GATAGATA
265418 GATAGATA
1 GATAGATA
265426 GATAGATA
1 GATAGATA
265434 GATAGATA
1 GATAGATA
265442 GATAGATA
1 GATAGATA
265450 GATAGATA
1 GATAGATA
265458 GATAGATA
1 GATAGATA
265466 GATAGATA
1 GATAGATA
265474 GATAGATA
1 GATAGATA
265482 GATAGATA
1 GATAGATA
265490 GATAGATA
1 GATAGATA
265498 GATAGATA
1 GATAGATA
265506 GATAGATA
1 GATAGATA
265514 GATAGATA
1 GATAGATA
265522 GATAGATA
1 GATAGATA
265530 GATAGATA
1 GATAGATA
265538 GATAGATA
1 GATAGATA
265546 GATAGATA
1 GATAGATA
265554 GATAGATA
1 GATAGATA
265562 GATAGATA
1 GATAGATA
265570 GATAGAT-
1 GATAGATA
265577 -ATAGATA
1 GATAGATA
265584 GATAGATA
1 GATAGATA
265592 GATAGATA
1 GATAGATA
265600 GATAGATA
1 GATAGATA
265608 GATAGATA
1 GATAGATA
265616 GATAGATA
1 GATAGATA
265624 GATAGATA
1 GATAGATA
265632 GATAGATA
1 GATAGATA
265640 GATAGATA
1 GATAGATA
265648 GATAGATA
1 GATAGATA
265656 GATAGATA
1 GATAGATA
265664 GATAGATA
1 GATAGATA
265672 GATAGATA
1 GATAGATA
265680 GATAGATA
1 GATAGATA
265688 GATAGATA
1 GATAGATA
265696 GATAGATA
1 GATAGATA
265704 GATAGATA
1 GATAGATA
265712 GATAGATA
1 GATAGATA
265720 GATAGATA
1 GATAGATA
265728 GATAGATA
1 GATAGATA
265736 GATAGATA
1 GATAGATA
265744 GATAGATA
1 GATAGATA
265752 GATAGATA
1 GATAGATA
265760 GATAGATA
1 GATAGATA
265768 GATAGATA
1 GATAGATA
265776 GATAGATA
1 GATAGATA
265784 GATAGATA
1 GATAGATA
265792 GATAGATA
1 GATAGATA
265800 GATAGATA
1 GATAGATA
265808 GATAGATA
1 GATAGATA
265816 GATAGATA
1 GATAGATA
265824 GATAGATA
1 GATAGATA
265832 GATAGATA
1 GATAGATA
265840 GATAGATA
1 GATAGATA
265848 GATAGATA
1 GATAGATA
265856 GATAGATA
1 GATAGATA
265864 GATAGATA
1 GATAGATA
265872 GATAGATA
1 GATAGATA
265880 GATAGATA
1 GATAGATA
265888 GATAGATA
1 GATAGATA
265896 GATAGATA
1 GATAGATA
265904 GATAGATA
1 GATAGATA
*
265912 GATAGATG
1 GATAGATA
265920 GATAGATA
1 GATAGATA
265928 GATAGATA
1 GATAGATA
*
265936 G--AGATG
1 GATAGATA
*
265942 GATAGATG
1 GATAGATA
265950 GATAGAT-
1 GATAGATA
*
265957 GAATGGATA
1 G-ATAGATA
*
265966 GATGGATA
1 GATAGATA
*
265974 GATGGATA
1 GATAGATA
*
265982 GATGGATA
1 GATAGATA
*
265990 GATGGATA
1 GATAGATA
*
265998 GATGGATA
1 GATAGATA
*
266006 GATGGATA
1 GATAGATA
*
266014 GATGGATA
1 GATAGATA
*
266022 GATGGATA
1 GATAGATA
*
266030 GATGGATA
1 GATAGATA
*
266038 GATGGATA
1 GATAGATA
*
266046 GATGGATA
1 GATAGATA
*
266054 GATGGATA
1 GATAGATA
*
266062 GATGGATA
1 GATAGATA
*
266070 GATGGATA
1 GATAGATA
*
266078 GATGGATA
1 GATAGATA
*
266086 GATGGATA
1 GATAGATA
*
266094 GATGGATA
1 GATAGATA
*
266102 GATGGATA
1 GATAGATA
*
266110 GATGGATA
1 GATAGATA
*
266118 GATGGATA
1 GATAGATA
*
266126 GATAGATG
1 GATAGATA
*
266134 GATAGATG
1 GATAGATA
*
266142 GATAGATG
1 GATAGATA
266150 GATAGATA
1 GATAGATA
*
266158 GATAGATG
1 GATAGATA
*
266166 GATAGATG
1 GATAGATA
* *
266174 GATAAATG
1 GATAGATA
*
266182 GATAGATG
1 GATAGATA
*
266190 GATAGATG
1 GATAGATA
*
266198 GATAGATG
1 GATAGATA
*
266206 GATAGATG
1 GATAGATA
*
266214 GATAGATT
1 GATAGATA
266222 GATAGATA
1 GATAGATA
266230 GATAGATA
1 GATAGATA
266238 GATAGATA
1 GATAGATA
266246 GATAGATA
1 GATAGATA
266254 GATAGATA
1 GATAGATA
266262 GATAGATA
1 GATAGATA
266270 GATAGATA
1 GATAGATA
266278 GATAGATA
1 GATAGATA
266286 GATAGATA
1 GATAGATA
266294 GATAGATA
1 GATAGATA
266302 GATAGATA
1 GATAGATA
266310 GATAGATA
1 GATAGATA
266318 GATAGATA
1 GATAGATA
266326 GATAGATA
1 GATAGATA
266334 GATAGATA
1 GATAGATA
*
266342 GATGGATA
1 GATAGATA
*
266350 GATGGATA
1 GATAGATA
*
266358 GATGGATA
1 GATAGATA
266366 GATAGGATA
1 GATA-GATA
266375 GATAGATA
1 GATAGATA
266383 GATAGATA
1 GATAGATA
*
266391 GATGGATA
1 GATAGATA
*
266399 GATTGATA
1 GATAGATA
266407 GATAGATA
1 GATAGATA
*
266415 GATGGATA
1 GATAGATA
*
266423 GATGGATA
1 GATAGATA
*
266431 GATGGATA
1 GATAGATA
266439 GATAGATA
1 GATAGATA
*
266447 GATGGATA
1 GATAGATA
*
266455 GATGGATA
1 GATAGATA
*
266463 GATGGATA
1 GATAGATA
*
266471 GATGGATA
1 GATAGATA
*
266479 GATGGATA
1 GATAGATA
266487 GATAGATA
1 GATAGATA
266495 GATAGATA
1 GATAGATA
266503 GATAGATA
1 GATAGATA
266511 GATAGATA
1 GATAGATA
266519 GATAGATA
1 GATAGATA
266527 GATAGATA
1 GATAGATA
266535 GATAGATA
1 GATAGATA
266543 GATAGATA
1 GATAGATA
266551 GATAGATA
1 GATAGATA
266559 GATAGATA
1 GATAGATA
* *
266567 TATAGATG
1 GATAGATA
*
266575 GATAGATG
1 GATAGATA
*
266583 GATAGATG
1 GATAGATA
266591 GATAGATA
1 GATAGATA
*
266599 GATGGATA
1 GATAGATA
*
266607 GATAGATG
1 GATAGATA
266615 GATAGATA
1 GATAGATA
* *
266623 TATGGATA
1 GATAGATA
*
266631 GATAGATG
1 GATAGATA
266639 GATAGATA
1 GATAGATA
* *
266647 TATGGATA
1 GATAGATA
*
266655 GATAGATG
1 GATAGATA
266663 GATAGATA
1 GATAGATA
* *
266671 TATGGATA
1 GATAGATA
*
266679 GATAGATG
1 GATAGATA
266687 GATAGATA
1 GATAGATA
*
266695 GATGGATA
1 GATAGATA
* *
266703 GGTAGATG
1 GATAGATA
266711 GATAGATA
1 GATAGATA
*
266719 GATGGATA
1 GATAGATA
*
266727 GATAGATG
1 GATAGATA
266735 GATAGATA
1 GATAGATA
*
266743 GATGGATA
1 GATAGATA
*
266751 GATAGATG
1 GATAGATA
266759 GATAGATA
1 GATAGATA
266767 GATAGATA
1 GATAGATA
* *
266775 AATAGATG
1 GATAGATA
266783 GATAGATA
1 GATAGATA
*
266791 GATGGATA
1 GATAGATA
*
266799 GATAGATG
1 GATAGATA
266807 GATAGATA
1 GATAGATA
*
266815 GATGGATA
1 GATAGATA
266823 GATAGAT-
1 GATAGATA
266830 GTATAGATA
1 G-ATAGATA
*
266839 GATGGATA
1 GATAGATA
*
266847 GATAGATG
1 GATAGATA
266855 GATAGATA
1 GATAGATA
*
266863 GATGGATA
1 GATAGATA
*
266871 GATAGATG
1 GATAGATA
266879 GATAGATA
1 GATAGATA
*
266887 GATGGATA
1 GATAGATA
*
266895 GATAGATG
1 GATAGATA
266903 GATAGATA
1 GATAGATA
*
266911 GATGGATA
1 GATAGATA
*
266919 GATAGATG
1 GATAGATA
266927 GATAGATA
1 GATAGATA
*
266935 GATGGATA
1 GATAGATA
*
266943 GATAGATG
1 GATAGATA
266951 GATAGATA
1 GATAGATA
*
266959 GATGGATA
1 GATAGATA
*
266967 GATAGATG
1 GATAGATA
*
266975 GATGGATA
1 GATAGATA
*
266983 GATAGATG
1 GATAGATA
266991 GATAGATA
1 GATAGATA
* *
266999 GATGGATG
1 GATAGATA
*
267007 GATAGATG
1 GATAGATA
267015 GATAGATA
1 GATAGATA
* *
267023 GATGGATG
1 GATAGATA
267031 GATAGATA
1 GATAGATA
* *
267039 GATGGATG
1 GATAGATA
*
267047 GATAGATG
1 GATAGATA
* *
267055 GAGAGATG
1 GATAGATA
*
267063 GATAGATG
1 GATAGATA
267071 GATAGATA
1 GATAGATA
267079 GATAGATA
1 GATAGATA
*
267087 GATGGATA
1 GATAGATA
*
267095 GATAGATG
1 GATAGATA
*
267103 GATGGATA
1 GATAGATA
*
267111 GAT-GAATG
1 GATAG-ATA
*
267119 GATGGATA
1 GATAGATA
* *
267127 GATGGATG
1 GATAGATA
*
267135 GATAGATG
1 GATAGATA
267143 GATAGATA
1 GATAGATA
*
267151 GATGGATA
1 GATAGATA
*
267159 GATAGATG
1 GATAGATA
267167 GATAGATA
1 GATAGATA
*
267175 GATTGATA
1 GATAGATA
*
267183 GATGGATA
1 GATAGATA
267191 GATAGATA
1 GATAGATA
*
267199 GATGGATA
1 GATAGATA
*
267207 GATAGATG
1 GATAGATA
267215 GATAGATA
1 GATAGATA
*
267223 GATGGATA
1 GATAGATA
*
267231 GATAGATG
1 GATAGATA
267239 GATAGATA
1 GATAGATA
*
267247 GATGGATA
1 GATAGATA
267255 GATAGAT-
1 GATAGATA
267262 GTATAGATA
1 G-ATAGATA
267271 GAT-GAATA
1 GATAG-ATA
*
267279 GATAGATG
1 GATAGATA
267287 GATAGATA
1 GATAGATA
*
267295 GATGGATA
1 GATAGATA
*
267303 GATAGATG
1 GATAGATA
267311 GATAGATA
1 GATAGATA
267319 GATAGATA
1 GATAGATA
*
267327 GATGGATA
1 GATAGATA
*
267335 GATGGATA
1 GATAGATA
* *
267343 AATAGATG
1 GATAGATA
*
267351 GATGGATA
1 GATAGATA
*
267359 GATGGATA
1 GATAGATA
*
267367 GATAGATG
1 GATAGATA
*
267375 GATGGATA
1 GATAGATA
*
267383 GATTGATA
1 GATAGATA
* *
267391 GATGGATG
1 GATAGATA
*
267399 GATGGATA
1 GATAGATA
*
267407 GATTGATA
1 GATAGATA
*
267415 GATGGATA
1 GATAGATA
*
267423 GATGGATA
1 GATAGATA
267431 GATAGATA
1 GATAGATA
*
267439 GATAAATA
1 GATAGATA
*
267447 GATGGATA
1 GATAGATA
* *
267455 GATGGATG
1 GATAGATA
*
267463 GATGGATA
1 GATAGATA
* *
267471 GATGGATG
1 GATAGATA
* *
267479 GATGGATG
1 GATAGATA
* *
267487 GATGGATT
1 GATAGATA
* *
267495 GATGGATG
1 GATAGATA
* *
267503 GATGGATT
1 GATAGATA
* *
267511 GATGGATT
1 GATAGATA
*
267519 GATGGATA
1 GATAGATA
*
267527 GATGGATA
1 GATAGATA
*
267535 GATGGATA
1 GATAGATA
*
267543 GATGGATA
1 GATAGATA
*
267551 GATGGATA
1 GATAGATA
*
267559 GATGGATA
1 GATAGATA
*
267567 GATGGATA
1 GATAGATA
267575 GATAGAT-
1 GATAGATA
267582 GTATAGATA
1 G-ATAGATA
267591 GAT-GTATA
1 GATAG-ATA
*
267599 GATAGATG
1 GATAGATA
*
267607 GATAGATG
1 GATAGATA
*
267615 GATAGATG
1 GATAGATA
*
267623 GATAGATG
1 GATAGATA
**
267631 GATAGACG
1 GATAGATA
*
267639 GATGGATA
1 GATAGATA
* *
267647 AATGGATA
1 GATAGATA
*
267655 GATAGATG
1 GATAGATA
*
267663 GATAGGTA
1 GATAGATA
*
267671 GATGGATA
1 GATAGATA
*
267679 GATAGATG
1 GATAGATA
267687 GATAGATA
1 GATAGATA
*
267695 GATGGATA
1 GATAGATA
267703 GATAGAT-
1 GATAGATA
267710 GAATAGATA
1 G-ATAGATA
*
267719 GATGGATA
1 GATAGATA
*
267727 GATAGATG
1 GATAGATA
267735 GATAGATA
1 GATAGATA
*
267743 GATGGATA
1 GATAGATA
*
267751 GATAGATG
1 GATAGATA
267759 GATAGATA
1 GATAGATA
*
267767 GATGGATA
1 GATAGATA
*
267775 GATAGATG
1 GATAGATA
*
267783 GATTGATA
1 GATAGATA
*
267791 GATGGATA
1 GATAGATA
*
267799 GATAGATG
1 GATAGATA
267807 GATAGATA
1 GATAGATA
*
267815 GATGGATA
1 GATAGATA
*
267823 GATATATA
1 GATAGATA
*
267831 GATGGATA
1 GATAGATA
* *
267839 GATGGATG
1 GATAGATA
267847 GATAGATA
1 GATAGATA
*
267855 GATGGATA
1 GATAGATA
*
267863 GATAGATG
1 GATAGATA
267871 GATAGATA
1 GATAGATA
*
267879 GATAGATG
1 GATAGATA
267887 GATAGATA
1 GATAGATA
*
267895 GATGGATA
1 GATAGATA
*
267903 GATAGATG
1 GATAGATA
267911 GATAGATA
1 GATAGATA
*
267919 GATGGATA
1 GATAGATA
*
267927 GATAGATG
1 GATAGATA
267935 GATAGATA
1 GATAGATA
*
267943 GATGGATA
1 GATAGATA
*
267951 GATAGATG
1 GATAGATA
*
267959 GATGGAT-
1 GATAGATA
* *
267966 GTATGGATG
1 G-ATAGATA
*
267975 GATTGATA
1 GATAGATA
267983 GATAGATA
1 GATAGATA
*
267991 GATAGATG
1 GATAGATA
267999 GATAGATA
1 GATAGATA
*
268007 GATGGATA
1 GATAGATA
*
268015 TATAGATA
1 GATAGATA
268023 GATAGATA
1 GATAGATA
268031 GATAGATA
1 GATAGATA
268039 GATAGATA
1 GATAGATA
268047 GATAGATA
1 GATAGATA
* *
268055 GATGGATG
1 GATAGATA
* *
268063 GATGGATG
1 GATAGATA
*
268071 GATAGATG
1 GATAGATA
* *
268079 GATTGATG
1 GATAGATA
* *
268087 GATGGATG
1 GATAGATA
* *
268095 GATGGATG
1 GATAGATA
*
268103 GATGGATA
1 GATAGATA
* *
268111 GATGGATG
1 GATAGATA
*
268119 GATAGATG
1 GATAGATA
* *
268127 GATGGGTA
1 GATAGATA
268135 GAT-GA-A
1 GATAGATA
*
268141 TGATAGATG
1 -GATAGATA
*
268150 GATGGATA
1 GATAGATA
* *
268158 GATGGATG
1 GATAGATA
*
268166 GATAGATG
1 GATAGATA
*
268174 GATGGATA
1 GATAGATA
* *
268182 GATGGATG
1 GATAGATA
*
268190 GATAGATG
1 GATAGATA
*
268198 GATGGATA
1 GATAGATA
* *
268206 GATGGATG
1 GATAGATA
*
268214 GATAGATG
1 GATAGATA
*
268222 GATGGATA
1 GATAGATA
*
268230 GATAGATG
1 GATAGATA
*
268238 GATGGATA
1 GATAGATA
*
268246 GATGGATA
1 GATAGATA
268254 GATAGATA
1 GATAGATA
*
268262 GATGGATA
1 GATAGATA
*
268270 GATAGATG
1 GATAGATA
268278 GATAGATA
1 GATAGATA
* *
268286 GATGGATG
1 GATAGATA
*
268294 GATAGATG
1 GATAGATA
268302 GATAGAT-
1 GATAGATA
268309 GAATAGATA
1 G-ATAGATA
*
268318 GATGGATA
1 GATAGATA
* *
268326 AATGGATA
1 GATAGATA
*
268334 GATGGATA
1 GATAGATA
268342 GA-AGGATA
1 GATA-GATA
268350 GAT-GAATA
1 GATAG-ATA
*
268358 GATGGATA
1 GATAGATA
*
268366 GATGGATA
1 GATAGATA
*
268374 GATGGATA
1 GATAGATA
*
268382 GATGGATA
1 GATAGATA
*
268390 GATGGATA
1 GATAGATA
268398 GATAGATA
1 GATAGATA
*
268406 GATGGATA
1 GATAGATA
*
268414 GATGGATA
1 GATAGATA
* *
268422 GTTGGATA
1 GATAGATA
268430 GAT
1 GAT
268433 GGATGGATGG
Statistics
Matches: 3219, Mismatches: 292, Indels: 88
0.89 0.08 0.02
Matches are distributed among these distances:
6 48 0.01
7 15 0.00
8 3137 0.97
9 19 0.01
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.26
Consensus pattern (8 bp):
GATAGATA
Found at i:268581 original size:4 final size:4
Alignment explanation
Indices: 265938--268576 Score: 1470
Period size: 4 Copynumber: 659.8 Consensus size: 4
265928 GATAGATAGA
* * * * * *
265938 GATG GATA GATG GATA GATG AATG GATA GATG GATA GATG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * *
265986 GATA GATG GATA GATG GATA GATG GATA GATG GATA GATG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * *
266034 GATA GATG GATA GATG GATA GATG GATA GATG GATA GATG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * *
266082 GATA GATG GATA GATG GATA GATG GATA GATG GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * *
266130 GATG GATA GATG GATA GATG GATA GATA GATA GATG GATA GATG GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
266178 AATG GATA GATG GATA GATG GATA GATG GATA GATG GATA GATT GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * * * * *
266226 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * * * * *
266274 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
266322 GATA GATA GATA GATA GATA GATG GATA GATG GATA GATG GATA GATAG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GAT-G
* * * * * * * * * *
266371 GATA GATA GATA GATA GATA GATG GATA GATT GATA GATA GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * *
266419 GATA GATG GATA GATG GATA GATA GATA GATG GATA GATG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * * *
266467 GATA GATG GATA GATG GATA GATA GATA GATA GATA GATA GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * * * * *
266515 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * *
266563 GATA TATA GATG GATA GATG GATA GATG GATA GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * * *
266611 GATG GATA GATA TATG GATA GATA GATG GATA GATA TATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
266659 GATG GATA GATA TATG GATA GATA GATG GATA GATA GATG GATAG G-TA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GAT-G GATG
* * * * * * * *
266707 GATG GATA GATA GATG GATA GATA GATG GATA GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * * *
266755 GATG GATA GATA GATA GATA AATA GATG GATA GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * *
266803 GATG GATA GATA GATG GATA GATA GATG TATA GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
266851 GATG GATA GATA GATG GATA GATA GATG GATA GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
266899 GATG GATA GATA GATG GATA GATA GATG GATA GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * *
266947 GATG GATA GATA GATG GATA GATA GATG GATG GATA GATA GATG GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * *
266995 GATA GATG GATG GATA GATG GATA GATA GATG GATG GATA GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * *
267043 GATG GATA GATG GA-G AGATG GATA GATG GATA GATA GATA GATA GATG
1 GATG GATG GATG GATG -GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * *
267091 GATA GATA GATG GATG GATA GATG AATG GATG GATA GATG GATG GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
267139 GATG GATA GATA GATG GATA GATA GATG GATA GATA GATT GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * *
267187 GATA GATA GATA GATG GATA GATA GATG GATA GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * * *
267235 GATG GATA GATA GATG GATA GATA GATG TATA GATA GATG AATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
267283 GATG GATA GATA GATG GATA GATA GATG GATA GATA GATA GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * *
267331 GATA GATG GATA AATA GATG GATG GATA GATG GATA GATA GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * *
267379 GATA GATT GATA GATG GATG GATG GATA GATT GATA GATG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
267427 GATA GATA GATA GATA AATA GATG GATA GATG GATG GATG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * *
267475 GATG GATG GATG GATG GATT GATG GATG GATG GATT GATG GATT GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * *
267523 GATA GATG GATA GATG GATA GATG GATA GATG GATA GATG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * * *
267571 GATA GATA GATG TATA GATA GATG TATA GATA GATG GATA GATG GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * *
267619 GATG GATA GATG GATA GACG GATG GATA AATG GATA GATA GATG GATAG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GAT-G
* * * * * * * * *
267668 G-TA GATG GATA GATA GATG GATA GATA GATG GATA GATA GATG AATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
267715 GATA GATG GATA GATA GATG GATA GATA GATG GATA GATA GATG GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
267763 GATA GATG GATA GATA GATG GATT GATA GATG GATA GATA GATG GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
267811 GATA GATG GATA GATA TATA GATG GATA GATG GATG GATA GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * *
267859 GATA GATA GATG GATA GATA GATA GATG GATA GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
267907 GATG GATA GATA GATG GATA GATA GATG GATA GATA GATG GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * *
267955 GATG GATG GATG TATG GATG GATT GATA GATA GATA GATA GATG GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * * * * * *
268003 GATA GATG GATA TATA GATA GATA GATA GATA GATA GATA GATA GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * *
268051 GATA GATG GATG GATG GATG GATA GATG GATT GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * *
268099 GATG GATG GATA GATG GATG GATA GATG GATG GGTA GATG AAT- GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * *
268146 GATG GATG GATA GATG GATG GATA GATG GATG GATA GATG GATG GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * *
268194 GATG GATG GATA GATG GATG GATA GATG GATG GATA GATA GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
268242 GATA GATG GATA GATA GATA GATG GATA GATA GATG GATA GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
268290 GATG GATA GATG GATA GATG AATA GATA GATG GATA AATG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
268338 GATA GAAG GATA GATG AATA GATG GATA GATG GATA GATG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * * * * *
268386 GATA GATG GATA GATA GATA GATG GATA GATG GATA GTTG GATA GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* *
268434 GATG GATG GATG GATG GATG GATG TATG GATG GATG GATA GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* * * * *
268482 GATG GAAG GATG GATG GTTG GATA GATG GATA GATG GATG GATG GATA
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
* *
268530 GATG GATT GATG GATG GATG GATG GATG GATG GATG GATA GATG GAT
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GAT
268577 AGATATAATA
Statistics
Matches: 2156, Mismatches: 471, Indels: 16
0.82 0.18 0.01
Matches are distributed among these distances:
3 5 0.00
4 2143 0.99
5 8 0.00
ACGTcount: A:0.40, C:0.00, G:0.34, T:0.26
Consensus pattern (4 bp):
GATG
Found at i:269315 original size:21 final size:21
Alignment explanation
Indices: 269271--269315 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
269261 ACCGATAAAA
* *
269271 TTTACCTAAAATATTATTATT
1 TTTACCTAAAATATTAATACT
*
269292 TTTACCTAAAATATTAATGCT
1 TTTACCTAAAATATTAATACT
269313 TTT
1 TTT
269316 TAATATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.51
Consensus pattern (21 bp):
TTTACCTAAAATATTAATACT
Found at i:269409 original size:80 final size:79
Alignment explanation
Indices: 269325--269472 Score: 224
Period size: 80 Copynumber: 1.9 Consensus size: 79
269315 TTAATATTTT
* *
269325 TGGTAAAGTGCCTAATAAAAACAAAATCGGTAGAAAAAATAATGTTTTAGGTAATATTTTACCGG
1 TGGTAAAGTGCCCAATAAAAACAAAACCGGTAGAAAAAATAATGTTTTAGGTAATATTTTACC-G
269390 ATATGTTAACAAAAC
65 ATATGTTAACAAAAC
* * * * *
269405 TGGTAAAGTGCCCAATAATAACAAAACCGGTATAAATAATAATGTTTTCGGTAATTTTTTACCGA
1 TGGTAAAGTGCCCAATAAAAACAAAACCGGTAGAAAAAATAATGTTTTAGGTAATATTTTACCGA
269470 TAT
66 TAT
269473 TATTAAAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
79 5 0.08
80 56 0.92
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (79 bp):
TGGTAAAGTGCCCAATAAAAACAAAACCGGTAGAAAAAATAATGTTTTAGGTAATATTTTACCGA
TATGTTAACAAAAC
Found at i:269835 original size:45 final size:45
Alignment explanation
Indices: 269771--269863 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
269761 TGGACTTTGC
269771 TTACGAACTATGATGCATGCTATCATAAATAGTACTTAAGGCTCT
1 TTACGAACTATGATGCATGCTATCATAAATAGTACTTAAGGCTCT
269816 TTACGAACTATGATGCATGCTATCATAAATAGTACTTAAGGCTCT
1 TTACGAACTATGATGCATGCTATCATAAATAGTACTTAAGGCTCT
269861 TTA
1 TTA
269864 TGAAAAATCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (45 bp):
TTACGAACTATGATGCATGCTATCATAAATAGTACTTAAGGCTCT
Found at i:271842 original size:64 final size:65
Alignment explanation
Indices: 271772--271927 Score: 208
Period size: 65 Copynumber: 2.4 Consensus size: 65
271762 ACACCTAATT
* * * * *
271772 TCGAATGCATTTTATGTACCGATGCACAG-CCATGCATCGATGCACT-CAGGATTTTATTGAAAC
1 TCGAATGCATTTTATGCATCGATGCACAGACCATACATCGATGCACTCCAGGATTGT-TTAAAAC
271835 A
65 A
* * *
271836 TCGAATGCATTTTATGCATTGATGCACAGACCATACATTGATGCACTCCAGGCTTGTTTAAAACA
1 TCGAATGCATTTTATGCATCGATGCACAGACCATACATCGATGCACTCCAGGATTGTTTAAAACA
*
271901 TCGAATGTATTTTATGCATCGATGCAC
1 TCGAATGCATTTTATGCATCGATGCAC
271928 CCTTAGTGTA
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 26 0.32
65 47 0.59
66 7 0.09
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (65 bp):
TCGAATGCATTTTATGCATCGATGCACAGACCATACATCGATGCACTCCAGGATTGTTTAAAACA
Found at i:273472 original size:23 final size:23
Alignment explanation
Indices: 273454--273512 Score: 102
Period size: 22 Copynumber: 2.6 Consensus size: 23
273444 CTCGTATAAA
273454 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTGCCCCGTAGAAT
273477 TGCACCGAAGTG-CCCGTAGAAT
1 TGCACCGAAGTGCCCCGTAGAAT
*
273499 TGCACCGTAGTGCC
1 TGCACCGAAGTGCC
273513 ATATAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 21 0.62
23 13 0.38
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (23 bp):
TGCACCGAAGTGCCCCGTAGAAT
Found at i:274213 original size:67 final size:67
Alignment explanation
Indices: 274103--274253 Score: 266
Period size: 67 Copynumber: 2.3 Consensus size: 67
274093 TTTTTCTCAT
* *
274103 GGGGGAATCGGTTCCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAATTCATATTCGTT
1 GGGGGTATCGGTTCCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAAATCATATTCGTT
274168 GA
66 GA
*
274170 GGGGGTATCGGTTCCCCCCCTGGGGGTATCGATTCCCCTCTAGCATTCTGGAAATCATATTCGTT
1 GGGGGTATCGGTTCCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAAATCATATTCGTT
274235 GA
66 GA
*
274237 GGGGGTATCAGTTCCCC
1 GGGGGTATCGGTTCCCC
274254 TTGAATGGGT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 80 1.00
ACGTcount: A:0.17, C:0.27, G:0.28, T:0.28
Consensus pattern (67 bp):
GGGGGTATCGGTTCCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAAATCATATTCGTT
GA
Found at i:280328 original size:23 final size:23
Alignment explanation
Indices: 280310--280368 Score: 102
Period size: 22 Copynumber: 2.6 Consensus size: 23
280300 CTCGTATAAA
280310 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTGCCCCGTAGAAT
280333 TGCACCGAAGTG-CCCGTAGAAT
1 TGCACCGAAGTGCCCCGTAGAAT
*
280355 TGCACCGTAGTGCC
1 TGCACCGAAGTGCC
280369 ATATAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 21 0.62
23 13 0.38
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (23 bp):
TGCACCGAAGTGCCCCGTAGAAT
Found at i:281053 original size:66 final size:66
Alignment explanation
Indices: 280944--281093 Score: 246
Period size: 66 Copynumber: 2.3 Consensus size: 66
280934 TTTTTCTCAT
* *
280944 GGGGGAATCGGTTCCCCCCCTGGGGGTATCGATTCCCCACTAGCATTATGGAATTCATATTCGTT
1 GGGGGTATCGGTT-CCCCCCTGGGGGTATCGATTCCCCACTAGCATTATGGAAATCATATTCGTT
281009 GA
65 GA
* *
281011 GGGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCTAGCATTCTGGAAATCATATTCGTTG
1 GGGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCACTAGCATTATGGAAATCATATTCGTTG
281076 A
66 A
*
281077 GGGGGTATCAGTTCCCC
1 GGGGGTATCGGTTCCCC
281094 TTGAATGGGT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
66 66 0.85
67 12 0.15
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.29
Consensus pattern (66 bp):
GGGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCACTAGCATTATGGAAATCATATTCGTTG
A
Found at i:282642 original size:10 final size:10
Alignment explanation
Indices: 282629--282658 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
282619 TTCTCAAGAA
282629 CTTTCTTCTT
1 CTTTCTTCTT
282639 CTTTCTTCTT
1 CTTTCTTCTT
282649 CTTT-TTCTT
1 CTTTCTTCTT
282658 C
1 C
282659 ATACGTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.30
10 14 0.70
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
CTTTCTTCTT
Found at i:283591 original size:23 final size:22
Alignment explanation
Indices: 283565--283626 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
283555 CACCACAGCT
*
283565 CGTATAAATGCACCGAGGTGACA
1 CGTAGAAATGCACCGA-GTGACA
* * * *
283588 CGTAGAATTGCACAGTAGTGCCG
1 CGTAGAAATGCACCG-AGTGACA
283611 CGTAGAAATGCACCGA
1 CGTAGAAATGCACCGA
283627 AGTACCATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (22 bp):
CGTAGAAATGCACCGAGTGACA
Found at i:285679 original size:23 final size:22
Alignment explanation
Indices: 285653--285714 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
285643 CACCACAGCT
*
285653 CGTATAAATGCACCGAGGTGACA
1 CGTAGAAATGCACCGA-GTGACA
* * * *
285676 CGTAGAATTGCACAGTAGTGCCG
1 CGTAGAAATGCACCG-AGTGACA
285699 CGTAGAAATGCACCGA
1 CGTAGAAATGCACCGA
285715 AGTACCATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (22 bp):
CGTAGAAATGCACCGAGTGACA
Found at i:286004 original size:25 final size:25
Alignment explanation
Indices: 285970--286020 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
285960 TTCACATAGC
*
285970 ACGTAGATTATGTTACATAAGTTGA
1 ACGTAGATTATGTCACATAAGTTGA
285995 ACGTAGATTATGTCACATAAGTTGA
1 ACGTAGATTATGTCACATAAGTTGA
286020 A
1 A
286021 TTACATATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (25 bp):
ACGTAGATTATGTCACATAAGTTGA
Found at i:286196 original size:2 final size:2
Alignment explanation
Indices: 286189--286251 Score: 112
Period size: 2 Copynumber: 32.5 Consensus size: 2
286179 TTCATCTTCC
286189 TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
286230 TA TA TA TA -A TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
286252 CATTTTTCCT
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
1 2 0.03
2 57 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:287342 original size:24 final size:20
Alignment explanation
Indices: 287285--287362 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 20
287275 TTTCCCTTGA
*
287285 AGTGCATCGATGCATTCTAC
1 AGTGCATCGATGCATCCTAC
*
287305 AGTGTATCGATGCATCCCTTAAC
1 AGTGCATCGATGCAT-CC-T-AC
*
287328 ATGTGCATCGATGCACTCCT-T
1 A-GTGCATCGATGCA-TCCTAC
287349 A-TGCATCGATGCAT
1 AGTGCATCGATGCAT
287363 TAATTGCATT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
18 1 0.02
19 12 0.24
20 14 0.29
21 2 0.04
22 1 0.02
23 4 0.08
24 14 0.29
25 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (20 bp):
AGTGCATCGATGCATCCTAC
Found at i:292347 original size:2 final size:2
Alignment explanation
Indices: 292340--292371 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
292330 AATTTGGGGA
292340 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
292372 GTGTGTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:294520 original size:30 final size:30
Alignment explanation
Indices: 294486--294549 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
294476 GGACCTATGG
294486 ATAGTTACCGAGGATCTTTATAACCTCTGA
1 ATAGTTACCGAGGATCTTTATAACCTCTGA
* *
294516 ATAGTTACCGAGGATCTTTATGACCTCTGG
1 ATAGTTACCGAGGATCTTTATAACCTCTGA
294546 ATAG
1 ATAG
294550 GTCCTTCGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (30 bp):
ATAGTTACCGAGGATCTTTATAACCTCTGA
Found at i:295737 original size:21 final size:21
Alignment explanation
Indices: 295713--295752 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
295703 AAGACTCTAT
295713 TTTCAAAATAT-AAAAATGATA
1 TTTCAAAAT-TGAAAAATGATA
295734 TTTCAAAATTGAAAAATGA
1 TTTCAAAATTGAAAAATGA
295753 AAATAGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (21 bp):
TTTCAAAATTGAAAAATGATA
Found at i:298782 original size:23 final size:23
Alignment explanation
Indices: 298701--298784 Score: 93
Period size: 23 Copynumber: 3.7 Consensus size: 23
298691 ACACTCGTCA
*
298701 GTGCATCGATGCA-TCCTTTGAAT
1 GTGCATCGATGCACT-CATTGAAT
* * *
298724 ATGCATCGATACAC-CA-TGAAG
1 GTGCATCGATGCACTCATTGAAT
*
298745 GTGCACCGATGCACTCATTGAAT
1 GTGCATCGATGCACTCATTGAAT
298768 GTGCATCGATGCACTCA
1 GTGCATCGATGCACTCA
298785 GCGGTGCATC
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
21 15 0.31
22 3 0.06
23 31 0.63
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (23 bp):
GTGCATCGATGCACTCATTGAAT
Found at i:301507 original size:64 final size:65
Alignment explanation
Indices: 301430--301582 Score: 193
Period size: 65 Copynumber: 2.4 Consensus size: 65
301420 ACACCCCATT
* * * *
301430 TCAAATTCATTTTATGCACCGATGCACAG-CCATGCATCGATGCACT-CAGGATTTTATTGAAAC
1 TCAAATGCATTTTATGCATCGATGCACAGACCATGCATCGATGCACTCCAGGATTGT-TTAAAAC
301493 A
65 A
** * * *
301494 TTGAATGCATTTTATGCATCGATGTACAGACCATGCATCGATGTACTCCAGGCTTGTTTAAAACA
1 TCAAATGCATTTTATGCATCGATGCACAGACCATGCATCGATGCACTCCAGGATTGTTTAAAACA
*
301559 TCAAATGTATTTTATGCATCGATG
1 TCAAATGCATTTTATGCATCGATG
301583 AACCCTTAGT
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
64 24 0.32
65 44 0.59
66 7 0.09
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (65 bp):
TCAAATGCATTTTATGCATCGATGCACAGACCATGCATCGATGCACTCCAGGATTGTTTAAAACA
Found at i:310673 original size:21 final size:20
Alignment explanation
Indices: 310647--310686 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
310637 CTAATAATGC
*
310647 CAAAAGAAATCATCCTTATCA
1 CAAAAG-AATCATACTTATCA
*
310668 CAAAAGGATCATACTTATC
1 CAAAAGAATCATACTTATC
310687 CTCAAATGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (20 bp):
CAAAAGAATCATACTTATCA
Found at i:315364 original size:18 final size:18
Alignment explanation
Indices: 315341--315377 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
315331 GTCAGTCTGA
*
315341 AATAGAAACTAATTTAAT
1 AATAGAAACAAATTTAAT
315359 AATAGAAACAAATTTAAT
1 AATAGAAACAAATTTAAT
315377 A
1 A
315378 TATACATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (18 bp):
AATAGAAACAAATTTAAT
Found at i:321515 original size:23 final size:23
Alignment explanation
Indices: 321485--321542 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
321475 CCCAGATTTG
321485 GTATCGATACCACAGTTAGGGAA
1 GTATCGATACCACAGTTAGGGAA
321508 GTATCGATACCACAGTTAGGGAA
1 GTATCGATACCACAGTTAGGGAA
*
321531 GTATCGGTACCA
1 GTATCGATACCA
321543 TGCATAGGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (23 bp):
GTATCGATACCACAGTTAGGGAA
Found at i:322172 original size:21 final size:19
Alignment explanation
Indices: 322148--322204 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 19
322138 ATATATAATC
322148 CTTTGGAATATATATTCGAGT
1 CTTTGGAATATATATT-G-GT
*
322169 CTTTGAGACACATAT-TTGGT
1 CTTTG-GA-ATATATATTGGT
322189 CATTTGGAATATATAT
1 C-TTTGGAATATATAT
322205 ATATATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
19 5 0.17
20 6 0.20
21 10 0.33
22 4 0.13
23 5 0.17
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.42
Consensus pattern (19 bp):
CTTTGGAATATATATTGGT
Found at i:322303 original size:23 final size:23
Alignment explanation
Indices: 322262--322345 Score: 123
Period size: 23 Copynumber: 3.7 Consensus size: 23
322252 TTTTATATGG
* *
322262 CACTTCGGTGCATTCCTACGCGA
1 CACTTCAGTGCATTTCTACGCGA
*
322285 CACTTCAGTGTATTTCTACGCGA
1 CACTTCAGTGCATTTCTACGCGA
* *
322308 CACTTCAGTGCATTTCTACGTGG
1 CACTTCAGTGCATTTCTACGCGA
322331 CACTTCAGTGCATTT
1 CACTTCAGTGCATTT
322346 TATACGAGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (23 bp):
CACTTCAGTGCATTTCTACGCGA
Found at i:340157 original size:2 final size:2
Alignment explanation
Indices: 340150--340180 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
340140 TAGGTGTCGT
340150 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
340181 TGTGCAGAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:342310 original size:9 final size:8
Alignment explanation
Indices: 342269--342341 Score: 53
Period size: 8 Copynumber: 9.1 Consensus size: 8
342259 GAAAAAATAT
*
342269 TAATATAA
1 TAATAAAA
342277 TAATAATAA
1 TAATAA-AA
342286 TAATAAAA
1 TAATAAAA
342294 TAGATAAAA
1 TA-ATAAAA
342303 TAGAT-AAA
1 TA-ATAAAA
**
342311 TAA-AATT
1 TAATAAAA
*
342318 TAGTAAAA
1 TAATAAAA
*
342326 -AATTAAA
1 TAATAAAA
342333 TAATAAAA
1 TAATAAAA
342341 T
1 T
342342 TTAGTAAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
7 9 0.18
8 23 0.45
9 19 0.37
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (8 bp):
TAATAAAA
Found at i:342329 original size:12 final size:12
Alignment explanation
Indices: 342312--342351 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
342302 ATAGATAAAT
342312 AAAATTTAGTAA
1 AAAATTTAGTAA
* *
342324 AAAATTAAATAA
1 AAAATTTAGTAA
342336 TAAAATTTAGTAA
1 -AAAATTTAGTAA
342349 AAA
1 AAA
342352 GAAAATAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (12 bp):
AAAATTTAGTAA
Found at i:342365 original size:25 final size:24
Alignment explanation
Indices: 342284--342364 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
342274 TAATAATAAT
*
342284 AATAATAAAA--TAG-ATAAAATA
1 AATAATAAAATTTAGTAAAAAATA
*
342305 GATAAATAAAATTTAGTAAAAAATTA
1 AAT-AATAAAATTTAGTAAAAAA-TA
342331 AATAATAAAATTTAGTAAAAAGA-A
1 AATAATAAAATTTAGTAAAAA-ATA
342355 AATAATAAAA
1 AATAATAAAA
342365 AATAATAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
21 2 0.04
22 7 0.14
24 14 0.27
25 23 0.45
26 5 0.10
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (24 bp):
AATAATAAAATTTAGTAAAAAATA
Found at i:342373 original size:24 final size:24
Alignment explanation
Indices: 342330--342375 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
342320 GTAAAAAATT
** *
342330 AAATAATAAAATTTAGTAAAAAGA
1 AAATAATAAAAAATAATAAAAAGA
342354 AAATAATAAAAAATAATAAAAA
1 AAATAATAAAAAATAATAAAAA
342376 TGGTTAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (24 bp):
AAATAATAAAAAATAATAAAAAGA
Found at i:342528 original size:20 final size:20
Alignment explanation
Indices: 342476--342529 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 20
342466 TCAAAATGCA
342476 AAATTAAAATAACAGGGGCT
1 AAATTAAAATAACAGGGGCT
* * *
342496 AAATCACAAAATAATAGTGGCT
1 AAAT--TAAAATAACAGGGGCT
342518 AAATTAAAATAA
1 AAATTAAAATAA
342530 AACAAAACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 11 0.39
22 17 0.61
ACGTcount: A:0.56, C:0.09, G:0.13, T:0.22
Consensus pattern (20 bp):
AAATTAAAATAACAGGGGCT
Found at i:343661 original size:42 final size:42
Alignment explanation
Indices: 343614--343694 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
343604 AATAATAATA
* * *
343614 ATATATTTTAAAAAA-TATTTTAAAGCTATATATTATATATAT
1 ATATATATTAAAAAAGT-TTTCAAAACTATATATTATATATAT
*
343656 ATATATATTAAAAAAGTTTTCAAAATTATATATTATATA
1 ATATATATTAAAAAAGTTTTCAAAACTATATATTATATA
343695 GTTTTCAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.97
43 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (42 bp):
ATATATATTAAAAAAGTTTTCAAAACTATATATTATATATAT
Found at i:343685 original size:25 final size:24
Alignment explanation
Indices: 343657--343703 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
343647 TATATATATA
343657 TATATATTAAAAAAGTTTTCAAAAT
1 TATATATT-AAAAAGTTTTCAAAAT
* *
343682 TATATATTATATAGTTTTCAAA
1 TATATATTAAAAAGTTTTCAAA
343704 TTGTTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (24 bp):
TATATATTAAAAAGTTTTCAAAAT
Found at i:343718 original size:37 final size:37
Alignment explanation
Indices: 343647--344064 Score: 435
Period size: 36 Copynumber: 11.4 Consensus size: 37
343637 AGCTATATAT
* * * * * *
343647 TATATA-TATATATATATTAAAAAAG-TTTTCAAAAT
1 TATATATTATATATGTTTTCAAAATGTTTTTAAAAAC
*
343682 TATATATTATATA-GTTTTCAAATTGTTTTTTAAAAA-
1 TATATATTATATATGTTTTCAAAATG-TTTTTAAAAAC
*
343718 TCATATATTATATATATTTTCAAAATGTTTTTAAAAA-
1 T-ATATATTATATATGTTTTCAAAATGTTTTTAAAAAC
* *
343755 TCATATATTATATATATTTTCAAAATGTTTTTTTTAAAAAA
1 T-ATATATTATATATGTTTTCAAAATG---TTTTTAAAAAC
* *
343796 AATATATTATATATATGCTTTCAAAATG-TTTTAAAAAC
1 TATATA-T-TATATATGTTTTCAAAATGTTTTTAAAAAC
*
343834 TATATATTATTTATGTTTTCAAAATGTTTTT-AAAAC
1 TATATATTATATATGTTTTCAAAATGTTTTTAAAAAC
* * *
343870 TATATAATATATATGCTTTCAAAATGTTTTAAAAAAC
1 TATATATTATATATGTTTTCAAAATGTTTTTAAAAAC
* *
343907 TATATATTATATATGTTTACAAATTG-TTTTAAAAAC
1 TATATATTATATATGTTTTCAAAATGTTTTTAAAAAC
* * *
343943 TATATAATATATATGCTTTCAAAATGTTTTAAAAAAC
1 TATATATTATATATGTTTTCAAAATGTTTTTAAAAAC
* *
343980 TATATAATATATATGTTTTCAAAAT-ATTTTAAAAAC
1 TATATATTATATATGTTTTCAAAATGTTTTTAAAAAC
* * **
344016 TGTATAATATATATAATTTCAAAATG-TTTT-AAAAC
1 TATATATTATATATGTTTTCAAAATGTTTTTAAAAAC
*
344051 TATATAATATATAT
1 TATATATTATATAT
344065 TTTAAAAAAA
Statistics
Matches: 332, Mismatches: 36, Indels: 30
0.83 0.09 0.08
Matches are distributed among these distances:
35 31 0.09
36 122 0.37
37 122 0.37
38 24 0.07
40 15 0.05
41 1 0.00
42 17 0.05
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (37 bp):
TATATATTATATATGTTTTCAAAATGTTTTTAAAAAC
Found at i:343832 original size:36 final size:35
Alignment explanation
Indices: 343647--344072 Score: 341
Period size: 37 Copynumber: 11.7 Consensus size: 35
343637 AGCTATATAT
* * * * *
343647 TATATATATATATAT-ATTAAAAAAGTTTTCAAAAT
1 TATAT-TATATATATGTTTCAAAATGTTTTAAAAAA
*
343682 TATATAT-TATATA-GTTTTCAAATTGTTTTTTAAAAATCA
1 TATAT-TATATATATG-TTTCAAAATG--TTTTAAAAA--A
343721 TATATTATATATAT-TTTCAAAATGTTTTTAAAAATCA
1 TATATTATATATATGTTTCAAAATG-TTTTAAAAA--A
343758 TATATTATATATAT-TTTCAAAATGTTTTTTTTAAAAAAAA
1 TATATTATATATATGTTTCAAAATG----TTTT--AAAAAA
343798 TATATTATATATATGCTTTCAAAATGTTTTAAAAACTA
1 TATATTATATATATG-TTTCAAAATGTTTTAAAAA--A
* *
343836 TATATTAT-T-TATGTTTTCAAAATGTTTTTAAAAC
1 TATATTATATATATG-TTTCAAAATGTTTTAAAAAA
*
343870 TATATAATATATATGCTTTCAAAATGTTTTAAAAAA
1 TATATTATATATATG-TTTCAAAATGTTTTAAAAAA
* *
343906 CTATA-TATTATATATGTTTACAAATTGTTTTAAAAAC
1 -TATATTA-TATATATGTTT-CAAAATGTTTTAAAAAA
*
343943 TATATAATATATATGCTTTCAAAATGTTTTAAAAAA
1 TATATTATATATATG-TTTCAAAATGTTTTAAAAAA
* * *
343979 CTATATAATATATATGTTTTCAAAATATTTTAAAAAC
1 -TATATTATATATATG-TTTCAAAATGTTTTAAAAAA
* * * *
344016 TGTATAATATATATAATTTCAAAATGTTTT-AAAAC
1 TATATTATATATAT-GTTTCAAAATGTTTTAAAAAA
* *
344051 TATATAATATATAT-TTTAAAAA
1 TATATTATATATATGTTTCAAAA
344073 AAATTGATTT
Statistics
Matches: 337, Mismatches: 28, Indels: 54
0.80 0.07 0.13
Matches are distributed among these distances:
33 7 0.02
34 13 0.04
35 32 0.09
36 106 0.31
37 110 0.33
38 23 0.07
39 11 0.03
40 20 0.06
42 15 0.04
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.46
Consensus pattern (35 bp):
TATATTATATATATGTTTCAAAATGTTTTAAAAAA
Found at i:343922 original size:73 final size:72
Alignment explanation
Indices: 343666--344064 Score: 471
Period size: 73 Copynumber: 5.4 Consensus size: 72
343656 ATATATATTA
* * * * * *
343666 AAAAAGTTTTCAAAATTATATATTATATA-GTTTTCAAATTGTTTTTTAAAAATCATATATTATA
1 AAAATGTTTTAAAAACTATATATTATATATGTTTTCAAAATG-TTTTTAAAACT-ATATAATATA
**
343730 TATATTTTC
64 TATGCTTTC
* *
343739 AAAATGTTTTTAAAAA-TCATATATTATATATATTTTCAAAATGTTTTTTTTAAAAAAAATATAT
1 AAAATG-TTTTAAAAACT-ATATATTATATATGTTTTCAAAATG---TTTTT---AAAACTATAT
*
343803 TATATATATGCTTTC
58 AATATATATGCTTTC
*
343818 AAAATGTTTTAAAAACTATATATTATTTATGTTTTCAAAATGTTTTTAAAACTATATAATATATA
1 AAAATGTTTTAAAAACTATATATTATATATGTTTTCAAAATGTTTTTAAAACTATATAATATATA
343883 TGCTTTC
66 TGCTTTC
* * *
343890 AAAATGTTTTAAAAAACTATATATTATATATGTTTACAAATTGTTTTAAAAACTATATAATATAT
1 AAAATGTTTT-AAAAACTATATATTATATATGTTTTCAAAATGTTTTTAAAACTATATAATATAT
343955 ATGCTTTC
65 ATGCTTTC
* * * *
343963 AAAATGTTTTAAAAAACTATATAATATATATGTTTTCAAAATATTTTAAAAACTGTATAATATAT
1 AAAATGTTTT-AAAAACTATATATTATATATGTTTTCAAAATGTTTTTAAAACTATATAATATAT
**
344028 ATAATTTC
65 ATGCTTTC
*
344036 AAAATGTTTT-AAAACTATATAATATATAT
1 AAAATGTTTTAAAAACTATATATTATATAT
344065 TTTAAAAAAA
Statistics
Matches: 293, Mismatches: 23, Indels: 22
0.87 0.07 0.07
Matches are distributed among these distances:
71 19 0.06
72 33 0.11
73 140 0.48
74 20 0.07
75 15 0.05
77 6 0.02
78 32 0.11
79 22 0.08
80 6 0.02
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.46
Consensus pattern (72 bp):
AAAATGTTTTAAAAACTATATATTATATATGTTTTCAAAATGTTTTTAAAACTATATAATATATA
TGCTTTC
Found at i:344979 original size:85 final size:84
Alignment explanation
Indices: 344890--345319 Score: 601
Period size: 85 Copynumber: 5.1 Consensus size: 84
344880 AACTCGACAA
* * *
344890 TTTTTTTTGGCAGATAACTCTTCTTGCCTTGAGTTATGCTGTAAATTTGATATGCCATTGAGCTG
1 TTTTTATTGACAGATAAC-CTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCATTGAGCTG
*
344955 AATGTAATTGAACTCGAAGG
65 AATGTAATCGAACTCGAAGG
* * *
344975 TTTTTATTGACAGATAACCTTTCGCGCCTTGAGTTATGCTGTAAATTTGATAGGCCCTTGAGCTG
1 TTTTTATTGACAGATAACC-TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCATTGAGCTG
*
345040 AATGTAATCGAACTTGAAGG
65 AATGTAATCGAACTCGAAGG
** * * *
345060 TTTTGGTTGACATATAACCCTTCTCGCCTTGAGTTATGTTGTAAATTTGATATGTCATTGAGCTG
1 TTTTTATTGACAGATAA-CCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCATTGAGCTG
345125 AATGTAATCGAACTCGAAGG
65 AATGTAATCGAACTCGAAGG
** *
345145 TTTTTATTGACTTATAAACCTTCTCGCCTTGAGTTATGCTGTAAATTTGATACGCCATTGAGCTG
1 TTTTTATTGACAGAT-AACCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCATTGAGCTG
345210 AATGTAATCGAACTCGAAGG
65 AATGTAATCGAACTCGAAGG
** * *
345230 TTTTGGTTGACAGATAACCCTTCTCACCTTGAGTTATGCTATAAATTTGATATGTCC-TTGAGCT
1 TTTTTATTGACAGATAA-CCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATG-CCATTGAGCT
* *
345294 GAATGGAATCGAACTTGAAGG
64 GAATGTAATCGAACTCGAAGG
345315 TTTTT
1 TTTTT
345320 TCGCTGGCAG
Statistics
Matches: 307, Mismatches: 33, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
84 3 0.01
85 298 0.97
86 6 0.02
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.38
Consensus pattern (84 bp):
TTTTTATTGACAGATAACCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCATTGAGCTGA
ATGTAATCGAACTCGAAGG
Found at i:345208 original size:170 final size:170
Alignment explanation
Indices: 344900--345319 Score: 671
Period size: 170 Copynumber: 2.5 Consensus size: 170
344890 TTTTTTTTGG
* * * *
344900 CAGATAACTCTTCTTGCCTTGAGTTATGCTGTAAATTTGATATGCCATTGAGCTGAATGTAATTG
1 CAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGTCATTGAGCTGAATGTAATCG
*
344965 AACTCGAAGGTTTTTATTGACAGATAACCTTTCGCGCCTTGAGTTATGCTGTAAATTTGATAGGC
66 AACTCGAAGGTTTTTATTGACAGATAACCTTTCGCGCCTTGAGTTATGCTGTAAATTTGATACGC
* *
345030 CCTTGAGCTGAATGTAATCGAACTTGAAGGTTTTGGTTGA
131 CATTGAGCTGAATGTAATCGAACTCGAAGGTTTTGGTTGA
* *
345070 CATATAACCCTTCTCGCCTTGAGTTATGTTGTAAATTTGATATGTCATTGAGCTGAATGTAATCG
1 CAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGTCATTGAGCTGAATGTAATCG
** *
345135 AACTCGAAGGTTTTTATTGACTTATAAACC-TTCTCGCCTTGAGTTATGCTGTAAATTTGATACG
66 AACTCGAAGGTTTTTATTGACAGAT-AACCTTTCGCGCCTTGAGTTATGCTGTAAATTTGATACG
345199 CCATTGAGCTGAATGTAATCGAACTCGAAGGTTTTGGTTGA
130 CCATTGAGCTGAATGTAATCGAACTCGAAGGTTTTGGTTGA
* * * *
345240 CAGATAACCCTTCTCACCTTGAGTTATGCTATAAATTTGATATGTCCTTGAGCTGAATGGAATCG
1 CAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGTCATTGAGCTGAATGTAATCG
*
345305 AACTTGAAGGTTTTT
66 AACTCGAAGGTTTTT
345320 TCGCTGGCAG
Statistics
Matches: 230, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
170 226 0.98
171 4 0.02
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (170 bp):
CAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGTCATTGAGCTGAATGTAATCG
AACTCGAAGGTTTTTATTGACAGATAACCTTTCGCGCCTTGAGTTATGCTGTAAATTTGATACGC
CATTGAGCTGAATGTAATCGAACTCGAAGGTTTTGGTTGA
Found at i:346180 original size:14 final size:14
Alignment explanation
Indices: 346162--346200 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
346152 AAAAAAATAA
346162 AAATAAAATAAAAT
1 AAATAAAATAAAAT
*
346176 TAATAAAAT-AAAT
1 AAATAAAATAAAAT
346189 AAATAATAATAA
1 AAATAA-AATAA
346201 TATATATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 9 0.43
14 11 0.52
15 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:346198 original size:19 final size:19
Alignment explanation
Indices: 346152--346200 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
346142 ACCCTAGACC
346152 AAAAA-AATAAAAATAAAAT
1 AAAAATAAT-AAAATAAAAT
*
346171 AAAATTAATAAAAT-AAAT
1 AAAAATAATAAAATAAAAT
346189 AAATAATAATAA
1 AAA-AATAATAA
346201 TATATATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 7 0.27
19 16 0.62
20 3 0.12
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAATAATAAAATAAAAT
Found at i:346243 original size:36 final size:35
Alignment explanation
Indices: 346200--346428 Score: 187
Period size: 36 Copynumber: 6.2 Consensus size: 35
346190 AATAATAATA
*
346200 ATATATATTTTAAAAAATATTTTAAAACTATATTATAT
1 ATATATATTTT-AAAAATGTTTTAAAACTATA-T-TAT
*
346238 ATATATATATATTAAAAAAGTTTTCAAAACTATA-TAT
1 ATATATAT-T-TTAAAAATGTTTT-AAAACTATATTAT
* *
346275 -TATATAGTTTTCAAAATGTTTTTTAAAAATCATA-TAT
1 ATATATA-TTTTAAAAATG--TTTTAAAACT-ATATTAT
* * *
346312 -TATATATGCTTTTAAAATGTTTTAAAAAATATATAAT
1 ATATATAT--TTTAAAAATGTTTT-AAAACTATATTAT
* * *
346349 ATATATGTTTTCAAAATGTTTTAAAAACTATATAAT
1 ATATATATTTTAAAAATGTTTT-AAAACTATATTAT
* *
346385 ATATATAATTTCAAAATGTTTTAAAACTATATATAT
1 ATATATATTTTAAAAATGTTTTAAAACTATAT-TAT
346421 ATATATAT
1 ATATATAT
346429 ATATATATAT
Statistics
Matches: 164, Mismatches: 14, Indels: 28
0.80 0.07 0.14
Matches are distributed among these distances:
35 17 0.10
36 75 0.46
37 28 0.17
38 23 0.14
39 10 0.06
40 11 0.07
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.45
Consensus pattern (35 bp):
ATATATATTTTAAAAATGTTTTAAAACTATATTAT
Found at i:346275 original size:25 final size:24
Alignment explanation
Indices: 346243--346290 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
346233 TATATATATA
346243 TATATATTAAAAAAGTTTTCAAAAC
1 TATATATT-AAAAAGTTTTCAAAAC
* *
346268 TATATATTATATAGTTTTCAAAA
1 TATATATTAAAAAGTTTTCAAAA
346291 TGTTTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (24 bp):
TATATATTAAAAAGTTTTCAAAAC
Found at i:346419 original size:2 final size:2
Alignment explanation
Indices: 346412--346458 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
346402 GTTTTAAAAC
346412 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
346454 TA TA T
1 TA TA T
346459 TCAAAAACCG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:346426 original size:74 final size:73
Alignment explanation
Indices: 346200--346428 Score: 238
Period size: 72 Copynumber: 3.1 Consensus size: 73
346190 AATAATAATA
** * *
346200 ATATATAT-TTTAAAAAATATTTT-AAAACTATATTATATATATATATATATTAAAAAAGTTTTC
1 ATATATATGTTTTCAAAATGTTTTAAAAACTATA-TA-ATATATATA-AT-TTAAAAATGTTTT-
346263 AAAAC-TATATAT
61 AAAACATATATAT
* ** *
346275 -TATATA-GTTTTCAAAATGTTTTTTAAAAA-TCATATATTATATATGCTTTTAAAATGTTTTAA
1 ATATATATGTTTTCAAAATG--TTTTAAAAACT-ATATAATATATATAATTTAAAAATGTTTTAA
*
346337 AAAATATATA-
63 AACATATATAT
*
346347 ATATATATGTTTTCAAAATGTTTTAAAAACTATATAATATATATAATTTCAAAATGTTTTAAAAC
1 ATATATATGTTTTCAAAATGTTTTAAAAACTATATAATATATATAATTTAAAAATGTTTTAAAAC
346412 TATATATAT
66 -ATATATAT
346421 ATATATAT
1 ATATATAT
346429 ATATATATAT
Statistics
Matches: 129, Mismatches: 14, Indels: 23
0.78 0.08 0.14
Matches are distributed among these distances:
72 42 0.33
73 31 0.24
74 35 0.27
75 7 0.05
76 7 0.05
77 7 0.05
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.45
Consensus pattern (73 bp):
ATATATATGTTTTCAAAATGTTTTAAAAACTATATAATATATATAATTTAAAAATGTTTTAAAAC
ATATATAT
Found at i:347090 original size:18 final size:17
Alignment explanation
Indices: 347049--347090 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
347039 ATGATTTAAA
*
347049 TCTGAATAATTCAGAGG
1 TCTGAATGATTCAGAGG
347066 T-TGAATGATTCAGAGG
1 TCTGAATGATTCAGAGG
347082 CTCTGAATG
1 -TCTGAATG
347091 GTTTGACTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 14 0.64
17 2 0.09
18 6 0.27
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (17 bp):
TCTGAATGATTCAGAGG
Found at i:351150 original size:17 final size:17
Alignment explanation
Indices: 351105--351190 Score: 82
Period size: 18 Copynumber: 4.9 Consensus size: 17
351095 ATTCTAAATG
* *
351105 TTTACAATTATCAGACA
1 TTTACAGTTATCAGATA
* *
351122 TTTCATAGTTATCAAATA
1 TTT-ACAGTTATCAGATA
351140 TTTACAGTTATCAGATGA
1 TTTACAGTTATCAGAT-A
* * *
351158 TTTTCAGTTATTAGATG
1 TTTACAGTTATCAGATA
*
351175 TTTATAGTTATCAGAT
1 TTTACAGTTATCAGAT
351191 GTAATTTAAT
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
17 27 0.49
18 28 0.51
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (17 bp):
TTTACAGTTATCAGATA
Found at i:351191 original size:17 final size:17
Alignment explanation
Indices: 351102--351192 Score: 76
Period size: 17 Copynumber: 5.2 Consensus size: 17
351092 TGAATTCTAA
* *
351102 ATGTTTACAATTATCAG
1 ATGTTTATAGTTATCAG
** *
351119 ACATTTCATAGTTATCAA
1 ATGTTT-ATAGTTATCAG
* *
351137 ATATTTACAGTTATCAG
1 ATGTTTATAGTTATCAG
*
351154 ATGATTT-TCAGTTATTAG
1 ATG-TTTAT-AGTTATCAG
351172 ATGTTTATAGTTATCAG
1 ATGTTTATAGTTATCAG
351189 ATGT
1 ATGT
351193 AATTTAATAA
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
17 30 0.52
18 28 0.48
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (17 bp):
ATGTTTATAGTTATCAG
Found at i:353497 original size:37 final size:37
Alignment explanation
Indices: 353438--353557 Score: 176
Period size: 35 Copynumber: 3.3 Consensus size: 37
353428 ATCCCATTAT
* *
353438 CATTTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAAC
*
353474 TATTTTTCAAAGAAACATTTACCAAACTTTG-AAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAAC
353510 CA-TTTTCAAAGAAACATTTACCAAACTTT-AAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAAC
353545 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
353558 TTGGTTACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
35 34 0.45
36 13 0.17
37 29 0.38
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.32
Consensus pattern (37 bp):
CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAAC
Found at i:353513 original size:21 final size:21
Alignment explanation
Indices: 353489--353549 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
353479 TTCAAAGAAA
353489 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
353510 CATTT-TCAAA----G-AAA-
1 CATTTACCAAACTTTGAAAAC
*
353524 CATTTACCAAACTTTAAAAAC
1 CATTTACCAAACTTTGAAAAC
353545 CATTT
1 CATTT
353550 TTTCAAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 14
0.64 0.06 0.30
Matches are distributed among these distances:
14 5 0.17
15 7 0.23
16 1 0.03
20 7 0.23
21 10 0.33
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.31
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:354856 original size:81 final size:81
Alignment explanation
Indices: 354721--354882 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
354711 TACTCATAAA
354721 ACTATCGAACTTCTTGTACCACTGTCTAGGAGCTTGTTTTAAACCATACAAGCTCTTCTTCAACC
1 ACTATCGAACTTCTTGTACCACTGTCTAGGAGCTTGTTTTAAACCATACAAGCTCTTCTTCAACC
354786 TGCATACTAGGTTTTT
66 TGCATACTAGGTTTTT
*
354802 ACTATCGAACTTCTTGTACCACTGTCTAGGAGCTTGTTTTAAACCATACAAGCTCTTCTTTAACC
1 ACTATCGAACTTCTTGTACCACTGTCTAGGAGCTTGTTTTAAACCATACAAGCTCTTCTTCAACC
354867 TGCATACTAGGTTTTT
66 TGCATACTAGGTTTTT
354883 CTTGCCTACC
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.38
Consensus pattern (81 bp):
ACTATCGAACTTCTTGTACCACTGTCTAGGAGCTTGTTTTAAACCATACAAGCTCTTCTTCAACC
TGCATACTAGGTTTTT
Found at i:357722 original size:16 final size:16
Alignment explanation
Indices: 357698--357731 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
357688 TATCGCCGAC
* *
357698 CGAATTTCACTATTCA
1 CGAAATTCAATATTCA
357714 CGAAATTCAATATTCA
1 CGAAATTCAATATTCA
357730 CG
1 CG
357732 TGAATAGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCAATATTCA
Found at i:361790 original size:14 final size:14
Alignment explanation
Indices: 361771--361808 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
361761 GGGTCACAAT
361771 TTTATG-TCTGTTCA
1 TTTATGTTC-GTTCA
361785 TTTATGTTCGTTCA
1 TTTATGTTCGTTCA
361799 TTTATGTTCG
1 TTTATGTTCG
361809 AACAGAGGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 21 0.91
15 2 0.09
ACGTcount: A:0.13, C:0.13, G:0.16, T:0.58
Consensus pattern (14 bp):
TTTATGTTCGTTCA
Found at i:362095 original size:13 final size:13
Alignment explanation
Indices: 362079--362105 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
362069 TGTTGTTCGT
362079 TTATGTTCATTTA
1 TTATGTTCATTTA
362092 TTATGTTCATTTA
1 TTATGTTCATTTA
362105 T
1 T
362106 GTTCGTTCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATGTTCATTTA
Found at i:367593 original size:29 final size:30
Alignment explanation
Indices: 367551--367616 Score: 107
Period size: 29 Copynumber: 2.2 Consensus size: 30
367541 CCCGAAGGAC
367551 CTATCCAGAGGTCACAAAGA-CCCCGGTAA
1 CTATCCAGAGGTCACAAAGATCCCCGGTAA
* *
367580 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCACAAAGATCCCCGGTAA
367610 CTATCCA
1 CTATCCA
367617 TAATGACCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 19 0.56
30 15 0.44
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.20
Consensus pattern (30 bp):
CTATCCAGAGGTCACAAAGATCCCCGGTAA
Found at i:368061 original size:15 final size:15
Alignment explanation
Indices: 368037--368071 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
368027 AACCATATAA
* *
368037 CTTATTATCACATAT
1 CTTATAATCACATAC
368052 CTTATAATCACATAC
1 CTTATAATCACATAC
368067 CTTAT
1 CTTAT
368072 TTCAATTCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.34, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
CTTATAATCACATAC
Found at i:368564 original size:64 final size:64
Alignment explanation
Indices: 368477--368697 Score: 236
Period size: 64 Copynumber: 3.5 Consensus size: 64
368467 TAATGAAGGT
* * * *
368477 ATGCATCGATGCACTACTGATGCATCGGTGCA-TAAAATGTATTCGATGTTGT-ATTATTACTGG
1 ATGCATCGATGCACTACTTATGCATCGATGCACT-AAATGCATTCGATGTT-TCATTATTAATGG
368540 G
64 G
* * *
368541 ATGCATCGATGCA-TGCCTTATGCATCGATGCACTAATTGCATTCGATGTTTCCTTATTAATGGG
1 ATGCATCGATGCACT-ACTTATGCATCGATGCACTAAATGCATTCGATGTTTCATTATTAATGGG
* * * **
368605 ATGCATCGATGCACTACTTATGCATCGATGCACGAATTGCATTCGATGTGTTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCACTAAATGCATTCGATGT-TTCATTATTAATGGG
**
368668 AGTGCATCGATGCACTACCAATGCATCGAT
1 A-TGCATCGATGCACTACTTATGCATCGAT
368698 ACACCTTCAA
Statistics
Matches: 136, Mismatches: 15, Indels: 12
0.83 0.09 0.07
Matches are distributed among these distances:
63 4 0.03
64 126 0.93
65 6 0.04
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACTAAATGCATTCGATGTTTCATTATTAATGGG
Found at i:373168 original size:30 final size:30
Alignment explanation
Indices: 373105--373197 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
373095 GAAGGACTTA
* * *
373105 TCCAGAGGTCACAAAGA-CCCCGGTAACTA
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
*
373134 TCCAGAGGTCATAAAGATCCTCGATAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
373164 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
373194 TCCA
1 TCCA
373198 TAATGACCAC
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
29 16 0.28
30 42 0.72
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (30 bp):
TCCAGAGGTCATAAAGATCCTCGGTAACTG
Found at i:373642 original size:15 final size:15
Alignment explanation
Indices: 373618--373652 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
373608 AACCATATAA
* *
373618 CTTATTATCACATAT
1 CTTATAATCACATAC
373633 CTTATAATCACATAC
1 CTTATAATCACATAC
373648 CTTAT
1 CTTAT
373653 TTCAATTCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.34, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
CTTATAATCACATAC
Found at i:374154 original size:64 final size:63
Alignment explanation
Indices: 374066--374286 Score: 216
Period size: 64 Copynumber: 3.5 Consensus size: 63
374056 TAATGAAGGT
* * * *
374066 ATGCATCGACGCACTACTGATGCATCGGTGCA-TAAAATGTATTCGATGTTGT-ATTATTACTAG
1 ATGCATCGATGCACTACTTATGCATCGATGCACT-AAATGTATTCGATGTT-TCA-TATTAATAG
374129 G
63 G
* * *
374130 ATGCATCGATGCA-TGCCTTATGCATCGATGCACTAATTGTATTCGATGTTTCCATATTAATGGG
1 ATGCATCGATGCACT-ACTTATGCATCGATGCACTAAATGTATTCGATGTTT-CATATTAATAGG
* * * * * *
374194 ATGCATCGATGCACTACTTATGCATCGATGCACGAATTGCATTCGATGTATTTATTTTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCACTAAATGTATTCGATGT-TTCATATTAATAGG
**
374257 AGTGCATCGATGCACTACCAATGCATCGAT
1 A-TGCATCGATGCACTACTTATGCATCGAT
374287 ACACCTTCAA
Statistics
Matches: 134, Mismatches: 16, Indels: 14
0.82 0.10 0.09
Matches are distributed among these distances:
63 4 0.03
64 125 0.93
65 5 0.04
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (63 bp):
ATGCATCGATGCACTACTTATGCATCGATGCACTAAATGTATTCGATGTTTCATATTAATAGG
Found at i:377730 original size:14 final size:16
Alignment explanation
Indices: 377692--377730 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
377682 AAAAAAAAAA
377692 GCTTTGGCTATTCCTT
1 GCTTTGGCTATTCCTT
*
377708 GCCTTGGCTA-TCC-T
1 GCTTTGGCTATTCCTT
377722 GCTTTGGCT
1 GCTTTGGCT
377731 TAATTGACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 9 0.43
15 3 0.14
16 9 0.43
ACGTcount: A:0.05, C:0.28, G:0.23, T:0.44
Consensus pattern (16 bp):
GCTTTGGCTATTCCTT
Found at i:379893 original size:37 final size:36
Alignment explanation
Indices: 379820--379894 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 36
379810 GTTGAAAAAT
*
379820 ATTTATATATTTTCTTTAAAAAATTTAAATGCATAAA
1 ATTTATATATTTTCTTTAAAAAATTAAAAT-CATAAA
* *
379857 ATTTATATAATTTTTTTTACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAAAAATT-AAAATCATAAA
379894 A
1 A
379895 AGGTTTAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 14 0.42
38 15 0.45
39 4 0.12
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (36 bp):
ATTTATATATTTTCTTTAAAAAATTAAAATCATAAA
Found at i:380474 original size:25 final size:25
Alignment explanation
Indices: 380442--380496 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
380432 TTTGAAGTGA
* *
380442 AATTTTGAATATGAATATTTAAATG
1 AATTTTGAATATAAAGATTTAAATG
380467 AATTTTGAATATAAAGATTTAAATG
1 AATTTTGAATATAAAGATTTAAATG
380492 AATTT
1 AATTT
380497 GGAGGATGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.44
Consensus pattern (25 bp):
AATTTTGAATATAAAGATTTAAATG
Found at i:381332 original size:16 final size:17
Alignment explanation
Indices: 381298--381337 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
381288 TTAAATGAAT
*
381298 TGATATGTGCTTATATG
1 TGATATGTGATTATATG
*
381315 TGCTATGTGATT-TATG
1 TGATATGTGATTATATG
381331 TGATATG
1 TGATATG
381338 CCATATGTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.23, C:0.05, G:0.25, T:0.47
Consensus pattern (17 bp):
TGATATGTGATTATATG
Found at i:381912 original size:23 final size:23
Alignment explanation
Indices: 381878--381965 Score: 81
Period size: 23 Copynumber: 3.8 Consensus size: 23
381868 ACATATTATA
*
381878 TGGCACTACGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* **
381901 TGGCACTTCGGTGCATTTCTTTG
1 TGGCACTTCGGTGCAATTCTACG
*
381924 CGGTC-CTTCGG-GACAAATTCTACG
1 TGG-CACTTCGGTG-C-AATTCTACG
*
381948 TGACACTTCGGTGCAATT
1 TGGCACTTCGGTGCAATT
381966 TATACGAGCT
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
22 1 0.02
23 33 0.66
24 15 0.30
25 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:383944 original size:2 final size:2
Alignment explanation
Indices: 383937--383970 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
383927 AAAATACATC
383937 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
383971 GTGTGTGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:387118 original size:45 final size:45
Alignment explanation
Indices: 387054--387145 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
387044 AGCAGTTTGG
387054 AGGAGTTTTTAGGACATCCAATCCAACGTTAGATTATTATTTTTT
1 AGGAGTTTTTAGGACATCCAATCCAACGTTAGATTATTATTTTTT
387099 AGGAGTTTTTAGGACATCCAATCCAACGTTAGATTATTATTTTTT
1 AGGAGTTTTTAGGACATCCAATCCAACGTTAGATTATTATTTTTT
387144 AG
1 AG
387146 TTTTCTCAGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.41
Consensus pattern (45 bp):
AGGAGTTTTTAGGACATCCAATCCAACGTTAGATTATTATTTTTT
Found at i:387414 original size:84 final size:84
Alignment explanation
Indices: 387305--387467 Score: 206
Period size: 84 Copynumber: 1.9 Consensus size: 84
387295 TTCAAAGAGC
*
387305 TATAACGAGACTGAGAAATAAGACTAGAATAGAATTTCCAATATACCATAACGTGTCC-TGAAAC
1 TATAACGAGACTGAGAAAT-AGACTAGAATAGAATTTCCAATAAACCATAACGTG-CCTTGAAAC
*
387369 AT-ATTAAGGTAAAGAAAGGA
64 ATGAATAAGGTAAAGAAAGGA
* * * *
387389 TATAATGAGACTGAAAGAAAT-GACTATATTAGAATTTCCATTAAACCATAACGTGCCTTGAAAC
1 TATAACGAGACTG--AGAAATAGACTAGAATAGAATTTCCAATAAACCATAACGTGCCTTGAAAC
*
387453 CTGAATAAGGTAAAG
64 ATGAATAAGGTAAAG
387468 TACTATAATG
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
83 2 0.03
84 49 0.72
85 11 0.16
86 6 0.09
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.25
Consensus pattern (84 bp):
TATAACGAGACTGAGAAATAGACTAGAATAGAATTTCCAATAAACCATAACGTGCCTTGAAACAT
GAATAAGGTAAAGAAAGGA
Found at i:390853 original size:23 final size:23
Alignment explanation
Indices: 390827--390876 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
390817 ATCAAGTATA
**
390827 ATAACATTTTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
390850 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
390873 ATAA
1 ATAA
390877 TAAAATAGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:390883 original size:23 final size:23
Alignment explanation
Indices: 390836--390884 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
390826 AATAACATTT
**
390836 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
390859 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
390882 TAG
1 TAG
390885 ACATTTAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:391457 original size:200 final size:198
Alignment explanation
Indices: 390983--391683 Score: 772
Period size: 200 Copynumber: 3.5 Consensus size: 198
390973 AGTAAACTGT
* * * *
390983 TATATTTATACCGGTAACATTGCAAATTTACCTATTACATTATTATTATCGGTTACGATGTTTTT
1 TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTT
** ** * * * **
391048 TAGATCGATACAATTT-TAAATGTATTGACACTTTATGCTTGCACATGGTTGAGCATTCATATTT
66 GGGATCGATACTTTTTATAAATGTATCGACACTTTATGGTTGCACCT-GTT-----TTGGTA-TT
* * * *
391112 CATTCTAGAAAAAAGTATCGACACAAACTAACAACGTGTCGATACATTAT-TTAGACCTATTCTC
124 CATTCTGGACAAAAGTATCGACACAAATTAACAA-GTGTCGATACATTATGTT-GACCTATTTTC
391176 TCATAAAACCGG
187 TCATAAAACCGG
* * * *
391188 TATA--TATACCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTTTC
1 TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTT
391251 GGGATCGATACTTTTTATAAATGTATCGACACTTTATGGTTGCACCCT-TTTTGGTATTCATTCT
66 GGGATCGATACTTTTTATAAATGTATCGACACTTTATGGTTGCA-CCTGTTTTGGTATTCATTCT
* * * * *
391315 GGACCAAAAGTATCGATACAAATTTAGCAAGTGTCGATACTTTATGCTGACCTATTTTATCATAA
130 GGA-CAAAAGTATCGACACAAA-TTAACAAGTGTCGATACATTATGTTGACCTATTTTCTCATAA
**
391380 AATGGG
193 AACCGG
** * *
391386 TATATTTATATTGGTTACATTGTAAATTTACCTAATACATTATAATTATCGGTTTCGATATTTTT
1 TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTT
* * *
391451 GGGATCGATACTTTTAATAAATGTATCGACACTTTATGCG-TGCACCTCG-TTTGTGCATTCATC
66 GGGATCGATACTTTTTATAAATGTATCGACACTTTATG-GTTGCACCT-GTTTTG-GTATTCATT
*
391514 CTGGACAATAAGTATCGACACAAATTACACAAGTGTCGATACATTATGTTGACCTATTTTCTAAT
128 CTGGACAA-AAGTATCGACACAAATTA-ACAAGTGTCGATACATTATGTTGACCTATTTTCTCAT
* *
391579 -TAACCGA
191 AAAACCGG
* * * *
391586 TATATTTATACCAGTTACATTGTTAATTTACCTATTACATTATAATTATTGGTTTTGATGTTTTT
1 TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATG-TTTT
* *
391651 TGGGGTCGATAC-TTGTATAAAATGTATCGACAC
65 TGGGATCGATACTTTTTAT-AAATGTATCGACAC
391684 ATATTTAGGT
Statistics
Matches: 422, Mismatches: 59, Indels: 34
0.82 0.11 0.07
Matches are distributed among these distances:
197 10 0.02
198 57 0.14
199 9 0.02
200 161 0.38
201 88 0.21
203 66 0.16
204 25 0.06
205 6 0.01
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (198 bp):
TATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTT
GGGATCGATACTTTTTATAAATGTATCGACACTTTATGGTTGCACCTGTTTTGGTATTCATTCTG
GACAAAAGTATCGACACAAATTAACAAGTGTCGATACATTATGTTGACCTATTTTCTCATAAAAC
CGG
Found at i:394993 original size:20 final size:20
Alignment explanation
Indices: 394946--394993 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
394936 ATCCGGTAGC
394946 TCTTTACCGGTTTTATCATT
1 TCTTTACCGGTTTTATCATT
** *
394966 TCAATACCGGTTTTGTCATAT
1 TCTTTACCGGTTTTATCAT-T
394987 T-TTTACC
1 TCTTTACC
394994 TATTATAGCG
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.19, C:0.21, G:0.10, T:0.50
Consensus pattern (20 bp):
TCTTTACCGGTTTTATCATT
Found at i:395091 original size:176 final size:180
Alignment explanation
Indices: 394734--395133 Score: 560
Period size: 180 Copynumber: 2.2 Consensus size: 180
394724 CGTACTTATG
* **
394734 AAAGTATCGACACTTTCAATATATCCGGTAGAGCTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTACCGACACTTTCAATATATCCGGTAGAGCTTTACCGGTTTTATCATTTCAATACCGGTTT
* * *
394799 TATCATATTTTTCATGTTATATCATTGTGGATCGATATATTTTTATAAAGTATCGACACTTTATA
66 TATCATATTTTTCATATTATAGCATTGTGGATCGATACATTTTTAT-AAGTATCGACACTTTATA
394864 GGCGCCAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTATATT
130 GGCGCCAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTATATT
* **
394915 AAA-TACCGACACTTTAAATATATCCGGTAGCTCTTTACCGGTTTTATCATTTCAATACCGGTTT
1 AAAGTACCGACACTTTCAATATATCCGGTAGAGCTTTACCGGTTTTATCATTTCAATACCGGTTT
* * *
394979 TGTCATATTTTTACCTATTATAGCGTTGTGGATCGATACA-TTTT-T-A-TATCGACACTTTATA
66 TATCATATTTTT-CATATTATAGCATTGTGGATCGATACATTTTTATAAGTATCGACACTTTATA
** *
395040 GGCGTTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
130 GGCGCCAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTATATT
* * * *
395091 AAAGTATCGACACGTTCAATATATCCAGTA-AGGATTTACCGGT
1 AAAGTACCGACACTTTCAATATATCCGGTAGA-GCTTTACCGGT
395134 ATTGTCTTTT
Statistics
Matches: 194, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
176 66 0.34
177 32 0.16
179 1 0.01
180 70 0.36
181 25 0.13
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (180 bp):
AAAGTACCGACACTTTCAATATATCCGGTAGAGCTTTACCGGTTTTATCATTTCAATACCGGTTT
TATCATATTTTTCATATTATAGCATTGTGGATCGATACATTTTTATAAGTATCGACACTTTATAG
GCGCCAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTATATT
Found at i:398101 original size:24 final size:24
Alignment explanation
Indices: 398050--398101 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
398040 ATCTGAGTAT
* *
398050 TGACCAAGATCAAAGTCCGGATAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
398074 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
398098 TGAC
1 TGAC
398102 TAGTACTCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:398862 original size:14 final size:15
Alignment explanation
Indices: 398828--398865 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
398818 GAAATCATTG
398828 AAAAATTATATAGAA
1 AAAAATTATATAGAA
398843 ATAAAATTATATA-AA
1 A-AAAATTATATAGAA
398858 AAAAATTA
1 AAAAATTA
398866 GAGATGGGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.32
15 4 0.18
16 11 0.50
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (15 bp):
AAAAATTATATAGAA
Found at i:399115 original size:20 final size:20
Alignment explanation
Indices: 399092--399152 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
399082 GCGAATTCAA
*
399092 AAATCTAGTTGCGAATTTGG
1 AAATCGAGTTGCGAATTTGG
*
399112 AAATCGCGTTGCGAATTTGG
1 AAATCGAGTTGCGAATTTGG
* * *
399132 AAATTGTGTTGCGAAATTGG
1 AAATCGAGTTGCGAATTTGG
399152 A
1 A
399153 GTTCGCGTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.33
Consensus pattern (20 bp):
AAATCGAGTTGCGAATTTGG
Found at i:399162 original size:20 final size:20
Alignment explanation
Indices: 399099--399170 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
399089 CAAAAATCTA
*
399099 GTTGCGAATTTGGAAATCGC
1 GTTGCGAATTTGGAATTCGC
*
399119 GTTGCGAATTTGGAAATT-GT
1 GTTGCGAATTTGG-AATTCGC
* *
399139 GTTGCGAAATTGGAGTTCGC
1 GTTGCGAATTTGGAATTCGC
*
399159 GTTGTGAATTTG
1 GTTGCGAATTTG
399171 TTGCTCATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 3 0.07
20 37 0.86
21 3 0.07
ACGTcount: A:0.22, C:0.10, G:0.32, T:0.36
Consensus pattern (20 bp):
GTTGCGAATTTGGAATTCGC
Found at i:399502 original size:39 final size:39
Alignment explanation
Indices: 399459--399549 Score: 103
Period size: 39 Copynumber: 2.3 Consensus size: 39
399449 AGCTAAGTAT
*
399459 GAAGACTCCAAAACTGTATAGCGTCTTCAAATAAAT-GAA
1 GAAGACTCCAAAACTGTATAGCGTCTTCAAACAAATAG-A
** * * **
399498 GAAGACTCCACGATTGTATGGCGTCTTCAGGCAAATAGA
1 GAAGACTCCAAAACTGTATAGCGTCTTCAAACAAATAGA
399537 GAAGACTCCAAAA
1 GAAGACTCCAAAA
399550 GTGCACAACA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
39 41 0.98
40 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.21
Consensus pattern (39 bp):
GAAGACTCCAAAACTGTATAGCGTCTTCAAACAAATAGA
Found at i:399844 original size:4 final size:4
Alignment explanation
Indices: 399828--399884 Score: 87
Period size: 4 Copynumber: 14.2 Consensus size: 4
399818 AAATTATTGT
* * *
399828 ATAC ATGC ATAC ATAC ATAC ATAA ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
399876 ATAC ATAC A
1 ATAC ATAC A
399885 CACACACACA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.49, C:0.23, G:0.04, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:399889 original size:2 final size:2
Alignment explanation
Indices: 399882--400102 Score: 433
Period size: 2 Copynumber: 110.5 Consensus size: 2
399872 ATGCATACAT
399882 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
*
399924 AC AC AC AC AC AC AC AC AC AC AA AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
399966 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
400008 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
400050 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
400092 AC AC AC AC AC A
1 AC AC AC AC AC A
400103 TACATATATG
Statistics
Matches: 217, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
2 217 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:400492 original size:42 final size:40
Alignment explanation
Indices: 400364--400494 Score: 106
Period size: 41 Copynumber: 3.2 Consensus size: 40
400354 ACAATGACGC
* * *
400364 AATAGAGTGGTAAATTAGCGGAGTTTATACCATAAACGCAAT
1 AATAGA-TGGTAAATTAGTGGCGTTTATACCA-AAACGCAGT
* * * *
400406 AATAG-T-TTAACATATAGTGGCGTTT-TAGCTAAAACGCTGC
1 AATAGATGGTAA-AT-TAGTGGCGTTTATA-CCAAAACGCAGT
*
400446 AATAGATCGGTAAATTAGTGGCGTTTATACCACAAACGCCGT
1 AATAGAT-GGTAAATTAGTGGCGTTTATACCA-AAACGCAGT
400488 AATAGAT
1 AATAGAT
400495 TACAGATATA
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
39 3 0.04
40 16 0.23
41 25 0.36
42 23 0.33
43 3 0.04
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.28
Consensus pattern (40 bp):
AATAGATGGTAAATTAGTGGCGTTTATACCAAAACGCAGT
Found at i:400507 original size:42 final size:39
Alignment explanation
Indices: 400386--400507 Score: 95
Period size: 42 Copynumber: 2.9 Consensus size: 39
400376 AATTAGCGGA
* *
400386 GTTTATACCATAAACGCAATAATAGTTTAACATATAGTGGC
1 GTTTATACCA-AAACGCAGTAATAGATTAA-ATATAGTGGC
* * *
400427 GTTT-TAGCTAAAACGCTGCAATAGATCGGTAAAT-TAGTGGC
1 GTTTATA-CCAAAACGCAGTAATAGAT---TAAATATAGTGGC
*
400468 GTTTATACCACAAACGCCGTAATAGATTACAGATATAGTG
1 GTTTATACCA-AAACGCAGTAATAGATTA-A-ATATAGTG
400508 ACATTTATTC
Statistics
Matches: 64, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
39 2 0.03
40 15 0.23
41 21 0.33
42 23 0.36
43 3 0.05
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.30
Consensus pattern (39 bp):
GTTTATACCAAAACGCAGTAATAGATTAAATATAGTGGC
Found at i:400571 original size:41 final size:40
Alignment explanation
Indices: 400520--400680 Score: 198
Period size: 41 Copynumber: 4.0 Consensus size: 40
400510 ATTTATTCTT
* * *
400520 AAAACGCCGCAATAGTGATAATAAATAATGGCATTTTTAA
1 AAAACGCCGCAATAGTGTTAATCAATAGTGGCATTTTTAA
**
400560 ATAAACGCCGCAATAGTGTTAATCAATAGTGGTGTTTTTAGA
1 A-AAACGCCGCAATAGTGTTAATCAATAGTGGCATTTTTA-A
*
400602 AAAACGCCGCAATAGTTTTAATCAATAGTGGCATTTTTTTAA
1 AAAACGCCGCAATAGTGTTAATCAATAGTGGCA--TTTTTAA
* * *
400644 CAAACGCCACAATAGTG-TAATCAATAGTGGCGTTTTT
1 AAAACGCCGCAATAGTGTTAATCAATAGTGGCATTTTT
400681 TTGTATAAAC
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
39 5 0.05
40 1 0.01
41 76 0.72
42 17 0.16
43 6 0.06
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (40 bp):
AAAACGCCGCAATAGTGTTAATCAATAGTGGCATTTTTAA
Found at i:400589 original size:83 final size:82
Alignment explanation
Indices: 400502--400672 Score: 200
Period size: 82 Copynumber: 2.1 Consensus size: 82
400492 GATTACAGAT
*** *
400502 ATAGTGACATTTATTCTTAAAACGCCGCAATAGTGATAATAAATAATGGCA-TTTTTAAATAAAC
1 ATAGTGACATTT-TTAGAAAAACGCCGCAATAGTGATAATAAATAATGGCATTTTTTAAACAAAC
*
400566 GCCGCAATAGTGTTAATCA
65 GCCACAATAGTG-TAATCA
*** ** * * *
400585 ATAGTGGTGTTTTTAGAAAAACGCCGCAATAGTTTTAATCAATAGTGGCATTTTTTTAACAAACG
1 ATAGTGACATTTTTAGAAAAACGCCGCAATAGTGATAATAAATAATGGCATTTTTTAAACAAACG
400650 CCACAATAGTGTAATCA
66 CCACAATAGTGTAATCA
400667 ATAGTG
1 ATAGTG
400673 GCGTTTTTTT
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
82 43 0.58
83 31 0.42
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32
Consensus pattern (82 bp):
ATAGTGACATTTTTAGAAAAACGCCGCAATAGTGATAATAAATAATGGCATTTTTTAAACAAACG
CCACAATAGTGTAATCA
Found at i:400634 original size:82 final size:82
Alignment explanation
Indices: 400520--400680 Score: 234
Period size: 82 Copynumber: 2.0 Consensus size: 82
400510 ATTTATTCTT
* *
400520 AAAACGCCGCAATAGTGATAATAAATAATGGCA-TTTTTAAATAAACGCCGCAATAGTGTTAATC
1 AAAACGCCGCAATAGTGATAATAAATAATGGCATTTTTTAAACAAACGCCACAATAGTG-TAATC
*
400584 AATAGTGGTGTTTTTAGA
65 AATAGTGGCGTTTTTAGA
** * * *
400602 AAAACGCCGCAATAGTTTTAATCAATAGTGGCATTTTTTTAACAAACGCCACAATAGTGTAATCA
1 AAAACGCCGCAATAGTGATAATAAATAATGGCATTTTTTAAACAAACGCCACAATAGTGTAATCA
400667 ATAGTGGCGTTTTT
66 ATAGTGGCGTTTTT
400681 TTGTATAAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
82 48 0.69
83 22 0.31
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (82 bp):
AAAACGCCGCAATAGTGATAATAAATAATGGCATTTTTTAAACAAACGCCACAATAGTGTAATCA
ATAGTGGCGTTTTTAGA
Found at i:402138 original size:42 final size:41
Alignment explanation
Indices: 401967--402277 Score: 304
Period size: 41 Copynumber: 7.5 Consensus size: 41
401957 GCTAAAGGTA
* *
401967 CGTACTTTAGTGGCGTTTTTATACAAACGCCGCTATAAAAT
1 CGTACTTTAGTGGCGTTTTTATACAAATGCCGCTATAAACT
* * * *
402008 AGTACGTTAGTGGCATTTTTATACAAATGCCGCTATATACT
1 CGTACTTTAGTGGCGTTTTTATACAAATGCCGCTATAAACT
* * * * *
402049 AGTACTTTAGTGGTGTTTCTATACAAACGCCGCTATATACT
1 CGTACTTTAGTGGCGTTTTTATACAAATGCCGCTATAAACT
* * *
402090 CATACTTTAGTGGCGTTTTGA-ATCTAAATGCTGCTATAAACT
1 CGTACTTTAGTGGCGTTTTTATA-C-AAATGCCGCTATAAACT
* **
402132 CGTACTTTAGTGGCGTTTTGAATGA-AAACACCGCTA-AAGACT
1 CGTACTTTAGTGGCGTTTT-TAT-ACAAATGCCGCTATAA-ACT
** * * *
402174 CGTACTTTAGAAGCGTTTTTATATAAATGTCGCTATAGACT
1 CGTACTTTAGTGGCGTTTTTATACAAATGCCGCTATAAACT
* * *
402215 AGTACTTTAGTGGCGTTTTTATACAAATGCTGCTATAGACT
1 CGTACTTTAGTGGCGTTTTTATACAAATGCCGCTATAAACT
* *
402256 CATACCCTTAGTGGCGTTTTTA
1 CGTA-CTTTAGTGGCGTTTTTA
402278 GATAAACGCC
Statistics
Matches: 221, Mismatches: 40, Indels: 17
0.79 0.14 0.06
Matches are distributed among these distances:
40 2 0.01
41 140 0.63
42 77 0.35
43 1 0.00
45 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (41 bp):
CGTACTTTAGTGGCGTTTTTATACAAATGCCGCTATAAACT
Found at i:402201 original size:83 final size:80
Alignment explanation
Indices: 401968--402283 Score: 294
Period size: 83 Copynumber: 3.8 Consensus size: 80
401958 CTAAAGGTAC
* * * * *
401968 GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATAAAATAGTACGTTAGTGGCATTTTTATACA
1 GTACTTTAGTGGCG-TTTTATACAAACGCCGCTA-AAACTCGTACTTTAGTGGCGTTTTTATATA
* *
402033 AATGCCGCTATATACTA
64 AATGCTGCTATAAACTA
* * * * *
402050 GTACTTTAGTGGTGTTTCTATACAAACGCCGCTATATACTCATACTTTAGTGGCGTTTTGAATCT
1 GTACTTTAGTGGCGTTT-TATACAAACGCCGCTA-AAACTCGTACTTTAGTGGCGTTTT-TATAT
*
402115 AAATGCTGCTATAAACTC
63 AAATGCTGCTATAAACTA
* **
402133 GTACTTTAGTGGCGTTTTGAATGA-AAACACCGCTAAAGACTCGTACTTTAGAAGCGTTTTTATA
1 GTACTTTAGTGGCGTTTT--AT-ACAAACGCCGCTAAA-ACTCGTACTTTAGTGGCGTTTTTATA
*
402197 TAAATG-TCGCTATAGACTA
62 TAAATGCT-GCTATAAACTA
* * * * * *
402216 GTACTTTAGTGGCGTTTTTATACAAATGCTGCTATAGACTCATACCCTTAGTGGCGTTTTTAGAT
1 GTACTTTAGTGGCG-TTTTATACAAACGCCGCTA-AAACTCGTA-CTTTAGTGGCGTTTTTATAT
402281 AAA
63 AAA
402284 CGCCACATAG
Statistics
Matches: 191, Mismatches: 32, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
81 4 0.02
82 66 0.35
83 85 0.45
84 35 0.18
85 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (80 bp):
GTACTTTAGTGGCGTTTTATACAAACGCCGCTAAAACTCGTACTTTAGTGGCGTTTTTATATAAA
TGCTGCTATAAACTA
Found at i:402218 original size:166 final size:166
Alignment explanation
Indices: 401967--402275 Score: 417
Period size: 166 Copynumber: 1.9 Consensus size: 166
401957 GCTAAAGGTA
* * **
401967 CGTACTTTAGTGGCGTTTTTATACAAACGCCGCTATAAAATAGTACGTTAGTGGCATTTTTATAC
1 CGTACTTTAGTGGCGTTTTAATACAAACACCGCTATAAAATAGTACGTTAGAAGCATTTTTATAC
* * * *
402032 AAATGCCGCTATATACTAGTACTTTAGTGGTGTTTCTATACAAACGCCGCTATATACTCATA-CT
66 AAATGCCGCTATAGACTAGTACTTTAGTGGCGTTTCTATACAAACGCCGCTATAGACTCATACCC
402096 TTAGTGGCGTTTTGAATCTAAATGCTGCTATAAACT
131 TTAGTGGCGTTTTGAATCTAAATGCTGCTATAAACT
* * * *
402132 CGTACTTTAGTGGCGTTTTGAATGA-AAACACCGCTA-AAGACTCGTACTTTAGAAGCGTTTTTA
1 CGTACTTTAGTGGCGTTTT-AAT-ACAAACACCGCTATAA-AATAGTACGTTAGAAGCATTTTTA
* * * * *
402195 TATAAATGTCGCTATAGACTAGTACTTTAGTGGCGTTTTTATACAAATGCTGCTATAGACTCATA
63 TACAAATGCCGCTATAGACTAGTACTTTAGTGGCGTTTCTATACAAACGCCGCTATAGACTCATA
402260 CCCTTAGTGGCGTTTT
128 CCCTTAGTGGCGTTTT
402276 TAGATAAACG
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
165 21 0.17
166 87 0.71
167 15 0.12
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (166 bp):
CGTACTTTAGTGGCGTTTTAATACAAACACCGCTATAAAATAGTACGTTAGAAGCATTTTTATAC
AAATGCCGCTATAGACTAGTACTTTAGTGGCGTTTCTATACAAACGCCGCTATAGACTCATACCC
TTAGTGGCGTTTTGAATCTAAATGCTGCTATAAACT
Found at i:402360 original size:42 final size:42
Alignment explanation
Indices: 402272--402359 Score: 124
Period size: 43 Copynumber: 2.1 Consensus size: 42
402262 CTTAGTGGCG
* **
402272 TTTTT-AGATAAACGCCACATAGATATAATATTTTGTGGCAT
1 TTTTTAAGATAAACACCACATAGATATAATATTTTACGGCAT
*
402313 TTTTTAAGATAAACACCGCAATAGATATAATATTTTACGGCAT
1 TTTTTAAGATAAACACCAC-ATAGATATAATATTTTACGGCAT
402356 TTTT
1 TTTT
402360 ATAAAAATGC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 5 0.12
42 11 0.27
43 25 0.61
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (42 bp):
TTTTTAAGATAAACACCACATAGATATAATATTTTACGGCAT
Found at i:410387 original size:21 final size:21
Alignment explanation
Indices: 410369--410421 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
410359 ATGAAGCAAG
410369 GGAAGCAGAGAGAGCAGCAGC
1 GGAAGCAGAGAGAGCAGCAGC
* *
410390 AGAAGCA-ACCAGAGCAGCAGC
1 GGAAGCAGA-GAGAGCAGCAGC
410411 GGAAGCAGAGA
1 GGAAGCAGAGA
410422 AAGAAGTTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 1 0.04
21 24 0.92
22 1 0.04
ACGTcount: A:0.42, C:0.21, G:0.38, T:0.00
Consensus pattern (21 bp):
GGAAGCAGAGAGAGCAGCAGC
Found at i:410986 original size:43 final size:43
Alignment explanation
Indices: 410850--411104 Score: 223
Period size: 43 Copynumber: 5.9 Consensus size: 43
410840 AGACATGTAC
* * *
410850 CGGCGTTTTTA-GCAGAAACGCCGCAAAACT-TCAACACCTACTG
1 CGGCGTTTTTATG-ACAAACGCCGCTAAA-TATCAACACCTATTG
** * * * *
410893 CGGCG-TTTTAACAAAATACGCCGCTAAACATCATA-ACATATTA
1 CGGCGTTTTTATGACAA-ACGCCGCTAAATATCA-ACACCTATTG
* * * * * *
410936 CGACGTTTGTCTGAGAAACGCTGCTAAATATTAACACCTATTG
1 CGGCGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTG
* *
410979 CGGCGTTTTTATGACAAACGTCGCTAAATATCAACACCTTTTG
1 CGGCGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTG
* * *
411022 CGGTGTTTTTATAACAAACGCCACTAAATATCAACACCTATTG
1 CGGCGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTG
* * *
411065 CGACGTTTTTCA-CACAAACGCCGCTAAATATCAATACCTA
1 CGGCGTTTTT-ATGACAAACGCCGCTAAATATCAACACCTA
411105 ATTTTCAACG
Statistics
Matches: 169, Mismatches: 36, Indels: 14
0.77 0.16 0.06
Matches are distributed among these distances:
42 9 0.05
43 152 0.90
44 8 0.05
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
CGGCGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTG
Found at i:411043 original size:129 final size:129
Alignment explanation
Indices: 410850--411104 Score: 275
Period size: 129 Copynumber: 2.0 Consensus size: 129
410840 AGACATGTAC
*
410850 CGGCGTTTTTAGCAGAAACGCCGCAAAACTTCAACACCTACTGCGGCGTTTTAACAAAATACGCC
1 CGGCGTTTTTAGCACAAACGCCGCAAAACTTCAACACCTACTGCGGCGTTTTAACAAAATACGCC
* ** * * *
410915 GCTAAACATCATA-ACATATTACGACGTTTGTCTGAGAAACGCTGCTAAATATTAACACCTATTG
66 ACTAAACATCA-ACACATATTACGACGTTTGTCACACAAACGCCGCTAAATATCAACACCTATTG
* * ** * * *
410979 CGGCGTTTTTATG-ACAAACGTCGCTAAA-TATCAACACCTTTTGCGGTGTTTTTATAACAA-AC
1 CGGCGTTTTTA-GCACAAACGCCGCAAAACT-TCAACACCTACTGCGGCGTTTTAACAA-AATAC
* * * * *
411041 GCCACTAAATATCAACACCTATTGCGACGTTTTTCACACAAACGCCGCTAAATATCAATACCTA
63 GCCACTAAACATCAACACATATTACGACGTTTGTCACACAAACGCCGCTAAATATCAACACCTA
411105 ATTTTCAACG
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
128 2 0.02
129 98 0.95
130 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (129 bp):
CGGCGTTTTTAGCACAAACGCCGCAAAACTTCAACACCTACTGCGGCGTTTTAACAAAATACGCC
ACTAAACATCAACACATATTACGACGTTTGTCACACAAACGCCGCTAAATATCAACACCTATTG
Found at i:412241 original size:4 final size:4
Alignment explanation
Indices: 412232--412261 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
412222 TATAAGTATA
412232 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
412262 TTGAATCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:418096 original size:43 final size:42
Alignment explanation
Indices: 418059--418340 Score: 266
Period size: 43 Copynumber: 6.6 Consensus size: 42
418049 ATATCAATTA
* * * *
418059 CGGCGTTTTTTGAACAAACGCCGGAAAAGGTCGATATCTATAG
1 CGGCGTTTCTAGAACAAACGCCGCAAAAGGTC-AGATCTATAG
* *
418102 CGGCGTTTCTAGAAAAAAACGCCGCAAAATGTCAGATCTATAG
1 CGGCGTTTCTAG-AACAAACGCCGCAAAAGGTCAGATCTATAG
* *
418145 CGGCGTTTCTTGATACAAACGCCGCAAAAGAG-CAGACCTATA-
1 CGGCGTTTCTAGA-ACAAACGCCGCAAAAG-GTCAGATCTATAG
* *
418187 CTGGCGTTTTTAGAACAAACGCCGCAAAAGGTCAGACCTATAG
1 C-GGCGTTTCTAGAACAAACGCCGCAAAAGGTCAGATCTATAG
* * * * * *
418230 CGGCGTTTTTGGACACAAACGCTGCAAAATGTCAGACCTATAA
1 CGGCGTTTCTAGA-ACAAACGCCGCAAAAGGTCAGATCTATAG
* *
418273 CGGCGTTT-TTGAACACAAACGCCGCAAAAAGTCAGA-CTTATAG
1 CGGCGTTTCTAG-A-ACAAACGCCGCAAAAGGTCAGATC-TATAG
* *
418316 CGGCGTTTTTGGATACAAACGCCGC
1 CGGCGTTTCTAGA-ACAAACGCCGC
418341 TAATTACCTT
Statistics
Matches: 207, Mismatches: 22, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
41 1 0.00
42 42 0.20
43 144 0.70
44 20 0.10
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (42 bp):
CGGCGTTTCTAGAACAAACGCCGCAAAAGGTCAGATCTATAG
Found at i:418195 original size:86 final size:82
Alignment explanation
Indices: 418059--418340 Score: 318
Period size: 86 Copynumber: 3.3 Consensus size: 82
418049 ATATCAATTA
* * * * *
418059 CGGCGTTTTTTGA-ACAAACGCCGGAAAAGGTCGATATCTATAGCGGCGTTTCTAGAAAAAAACG
1 CGGCGTTTTTGGATACAAACGCCGCAAAAGG-C-AGACCTATA-CGGCGTTT-TAGAAACAAACG
*
418123 CCGCAAAATGTCAGATCTATAG
62 CCGCAAAAAGTCAGA-CTATAG
418145 CGGCGTTTCTT-GATACAAACGCCGCAAAAGAGCAGACCTATACTGGCGTTTTTAG-AACAAACG
1 CGGCGTTT-TTGGATACAAACGCCGCAAAAG-GCAGACCTATAC-GGCG-TTTTAGAAACAAACG
*
418208 CCGCAAAAGGTCAGACCTATAG
62 CCGCAAAAAGTCAGA-CTATAG
* * * *
418230 CGGCGTTTTTGGACACAAACGCTGCAAAATGTCAGACCTATAACGGCGTTTTTGAACACAAACGC
1 CGGCGTTTTTGGATACAAACGCCGCAAAA-GGCAGACCTAT-ACGGCGTTTTAGAA-ACAAACGC
418295 CGCAAAAAGTCAGACTTATAG
63 CGCAAAAAGTCAGAC-TATAG
418316 CGGCGTTTTTGGATACAAACGCCGC
1 CGGCGTTTTTGGATACAAACGCCGC
418341 TAATTACCTT
Statistics
Matches: 172, Mismatches: 13, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
84 7 0.04
85 67 0.39
86 76 0.44
87 21 0.12
88 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (82 bp):
CGGCGTTTTTGGATACAAACGCCGCAAAAGGCAGACCTATACGGCGTTTTAGAAACAAACGCCGC
AAAAAGTCAGACTATAG
Found at i:418257 original size:128 final size:129
Alignment explanation
Indices: 418059--418340 Score: 374
Period size: 128 Copynumber: 2.2 Consensus size: 129
418049 ATATCAATTA
* * * *
418059 CGGCGTTTTTTGAACAAACGCCGGAAAAGGTCGATATCTATAGCGGCGTTTCTAGAAAAAAACGC
1 CGGCGTTTTTAGAACAAACGCCGCAAAAGGTCGAGACCTATAGCGGCGTTTCTAGAAAAAAACGC
* * *
418124 CGCAAAATGTCAGATCTATAGCGGCGTTTCTTG-ATACAAACGCCGCAAAAGAG-CAGACCTATA
66 CGCAAAATGTCAGACCTATAACGGCGTTT-TTGAACACAAACGCCGCAAAA-AGTCAGACCTATA
418187 -
129 G
* * * *
418187 CTGGCGTTTTTAGAACAAACGCCGCAAAAGGTC-AGACCTATAGCGGCGTTTTTGGACACAAACG
1 C-GGCGTTTTTAGAACAAACGCCGCAAAAGGTCGAGACCTATAGCGGCGTTTCTAGAAAAAAACG
* *
418251 CTGCAAAATGTCAGACCTATAACGGCGTTTTTGAACACAAACGCCGCAAAAAGTCAGACTTATAG
65 CCGCAAAATGTCAGACCTATAACGGCGTTTTTGAACACAAACGCCGCAAAAAGTCAGACCTATAG
*
418316 CGGCGTTTTTGGATACAAACGCCGC
1 CGGCGTTTTTAGA-ACAAACGCCGC
418341 TAATTACCTT
Statistics
Matches: 135, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
127 5 0.04
128 89 0.66
129 41 0.30
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (129 bp):
CGGCGTTTTTAGAACAAACGCCGCAAAAGGTCGAGACCTATAGCGGCGTTTCTAGAAAAAAACGC
CGCAAAATGTCAGACCTATAACGGCGTTTTTGAACACAAACGCCGCAAAAAGTCAGACCTATAG
Found at i:422356 original size:42 final size:41
Alignment explanation
Indices: 422310--422711 Score: 407
Period size: 42 Copynumber: 9.7 Consensus size: 41
422300 TATGACAATT
422310 GCGGCGATTGGTATTAAAACGCCACTAAAGTACGAGTCTATA
1 GCGGCG-TTGGTATTAAAACGCCACTAAAGTACGAGTCTATA
* *
422352 GCGGCATTTGGTATTAAAACGCCACAAAAGTAC-ATGTCTATA
1 GCGGC-GTTGGTATTAAAACGCCACTAAAGTACGA-GTCTATA
* *
422394 GTGGCGTT--TATGTAAAAACGCCACTAAAGTACGAATCTATA
1 GCGGCGTTGGTAT-T-AAAACGCCACTAAAGTACGAGTCTATA
* * * *
422435 GCGGTGTTTGGCATTAAAACGCCACAAAAGTACGTGTCTATA
1 GCGGCG-TTGGTATTAAAACGCCACTAAAGTACGAGTCTATA
* *
422477 GCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATA
1 GCGGCG-TTGGTATTAAAACGCCACTAAAGTACGAGTCTATA
* * * *
422519 GCGGCGTTTGTGTAAAAATGCCACTAAAGTACGAGTCTATA
1 GCGGCGTTGGTATTAAAACGCCACTAAAGTACGAGTCTATA
* * *
422560 GCGGCGTTTGGTATTAAAATGCCACAAAAGTACGTGTCTATA
1 GCGGCG-TTGGTATTAAAACGCCACTAAAGTACGAGTCTATA
* * * * *
422602 GCGGCGTTTGTATAAAAACGCCACTAAAATACTAGTTTATA
1 GCGGCGTTGGTATTAAAACGCCACTAAAGTACGAGTCTATA
* * * * * * * *
422643 GCGGTGTTTGTATAAAAATGCCACTACATTACGATTCTTTA
1 GCGGCGTTGGTATTAAAACGCCACTAAAGTACGAGTCTATA
**
422684 GCGGCGTTTTTA-TACAAACGCCACTAAA
1 GCGGCGTTGGTATTA-AAACGCCACTAAA
422712 TTATAGTATT
Statistics
Matches: 304, Mismatches: 46, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.01
40 2 0.01
41 146 0.48
42 150 0.49
43 1 0.00
44 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (41 bp):
GCGGCGTTGGTATTAAAACGCCACTAAAGTACGAGTCTATA
Found at i:422416 original size:83 final size:83
Alignment explanation
Indices: 422310--422692 Score: 422
Period size: 83 Copynumber: 4.6 Consensus size: 83
422300 TATGACAATT
* *
422310 GCGGCGATTGGTATTAAAACGCCACTAAAGTACGAGTCTATAGCGGCATTTGGTATTAAAACGCC
1 GCGGCGTTTGGTA-TAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGGTATTAAAACGCC
422375 ACAAAAGTACATGTCTATA
65 ACAAAAGTACATGTCTATA
* * * * *
422394 GTGGCGTTTATGTA-AAAACGCCACTAAAGTACGAATCTATAGCGGTGTTTGGCATTAAAACGCC
1 GCGGCGTTT-GGTATAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGGTATTAAAACGCC
*
422458 ACAAAAGTACGTGTCTATA
65 ACAAAAGTACATGTCTATA
* * *
422477 GCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGTGTA--AAAATGC
1 GCGGCGTTTGGTA-TAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTG-GTATTAAAACGC
*
422540 CACTAAAGTACGA-GTCTATA
64 CACAAAAGTAC-ATGTCTATA
* * * *
422560 GCGGCGTTTGGTATTAAAATGCCACAAAAGTACGTGTCTATAGCGGCGTTT-GTATAAAAACGCC
1 GCGGCGTTTGGTA-TAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGGTATTAAAACGCC
*
422624 ACTAAAA-TAC-TAGTTTATA
65 AC-AAAAGTACAT-GTCTATA
* * * * * *
422643 GCGGTGTTT-GTATAAAAATGCCACTACATTACGATTCTTTAGCGGCGTTT
1 GCGGCGTTTGGTAT-AAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTT
422693 TTATACAAAC
Statistics
Matches: 259, Mismatches: 29, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
81 4 0.02
82 36 0.14
83 171 0.66
84 43 0.17
85 5 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (83 bp):
GCGGCGTTTGGTATAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCA
CAAAAGTACATGTCTATA
Found at i:422506 original size:125 final size:124
Alignment explanation
Indices: 422310--422692 Score: 545
Period size: 125 Copynumber: 3.1 Consensus size: 124
422300 TATGACAATT
* * * *
422310 GCGGCGATTGGTATTAAAACGCCACTAAAGTACGAGTCTATAGCGGCATTTGGTATTAAAACGCC
1 GCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGGTATTAAAACGCC
* * *
422375 ACAAAAGTACATGTCTATAGTGGCGTTTATGTAAAAACGCCACTAAAGTACGAATCTATA
66 ACAAAAGTAC-TGTCTATAGCGGCGTTTGTGTAAAAATGCCACTAAAGTACGAATCTATA
* *
422435 GCGGTGTTTGGCATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGGTATTAAAACGCC
1 GCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGGTATTAAAACGCC
*
422500 ACAAAAGTACGTGTCTATAGCGGCGTTTGTGTAAAAATGCCACTAAAGTACGAGTCTATA
66 ACAAAAGTAC-TGTCTATAGCGGCGTTTGTGTAAAAATGCCACTAAAGTACGAATCTATA
* *
422560 GCGGCGTTTGGTATTAAAATGCCACAAAAGTACGTGTCTATAGCGGCGTTT-GTATAAAAACGCC
1 GCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGGTATTAAAACGCC
* * * * * * *
422624 ACTAAAA-TACTAGTTTATAGCGGTGTTTGTATAAAAATGCCACTACATTACGATTCTTTA
66 AC-AAAAGTACT-GTCTATAGCGGCGTTTGTGTAAAAATGCCACTAAAGTACGAATCTATA
422684 GCGGCGTTT
1 GCGGCGTTT
422693 TTATACAAAC
Statistics
Matches: 234, Mismatches: 22, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
123 1 0.00
124 67 0.29
125 166 0.71
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (124 bp):
GCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGGTATTAAAACGCC
ACAAAAGTACTGTCTATAGCGGCGTTTGTGTAAAAATGCCACTAAAGTACGAATCTATA
Found at i:425971 original size:28 final size:29
Alignment explanation
Indices: 425916--426090 Score: 122
Period size: 29 Copynumber: 6.2 Consensus size: 29
425906 ATCTTTATTA
*
425916 AAAT-ATTATTATATTAATATTAAATATAT
1 AAATAATTATTATA-TATTATTAAATATAT
425945 AAATAA-TATTAT-TCATTATTAAATATAT
1 AAATAATTATTATAT-ATTATTAAATATAT
*
425973 AAATAATTTATTATATATTATTAAA-ATAA
1 AAATAA-TTATTATATATTATTAAATATAT
* *
426002 AAATATAATATCT-TATATTATTATA-ATAT
1 AAATA-ATTAT-TATATATTATTAAATATAT
* *
426031 AATTGATTATT-T-TATTA-T-AATAT-T
1 AAATAATTATTATATATTATTAAATATAT
* *
426055 AAA-AATATAATATTATATTATTAGATATAT
1 AAATAAT-TATTA-TATATTATTAAATATAT
*
426085 TAATAA
1 AAATAA
426091 ATATATTTTA
Statistics
Matches: 116, Mismatches: 14, Indels: 30
0.73 0.09 0.19
Matches are distributed among these distances:
23 2 0.02
24 7 0.06
25 3 0.03
26 6 0.05
27 8 0.07
28 24 0.21
29 42 0.36
30 21 0.18
31 3 0.03
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (29 bp):
AAATAATTATTATATATTATTAAATATAT
Found at i:426084 original size:22 final size:23
Alignment explanation
Indices: 426043--426089 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
426033 TTGATTATTT
426043 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* * *
426065 TATTATATTATTAGATATATTAA
1 TATTATAATATTAAAAATATTAA
426088 TA
1 TA
426090 AATATATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:426105 original size:23 final size:23
Alignment explanation
Indices: 426068--426123 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
426058 AATATAATAT
*
426068 TATATTATTAGATATATTAATAAA
1 TATATT-TTAAATATATTAATAAA
* *
426092 TATATTTTAAATATTTTAATAAT
1 TATATTTTAAATATATTAATAAA
426115 TAATATTTT
1 T-ATATTTT
426124 GATTAAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
TATATTTTAAATATATTAATAAA
Found at i:426376 original size:42 final size:42
Alignment explanation
Indices: 426330--426410 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
426320 CAAACACTGG
* * * *
426330 AAAACATTTTCCGGAAAACGAATTCCGTGAAACAAACACATA
1 AAAACATTTTCCAGAAAACAAATTACATGAAACAAACACATA
*
426372 AAAACATTTTTCAGAAAACAAATTACATGAAACAAACAC
1 AAAACATTTTCCAGAAAACAAATTACATGAAACAAACAC
426411 GGAATTTCAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.52, C:0.20, G:0.09, T:0.20
Consensus pattern (42 bp):
AAAACATTTTCCAGAAAACAAATTACATGAAACAAACACATA
Found at i:428076 original size:113 final size:112
Alignment explanation
Indices: 427983--428188 Score: 317
Period size: 113 Copynumber: 1.8 Consensus size: 112
427973 TTTAACTTAT
* *
427983 AAATATATTTATTTAGTGAAGATAATAATAAAATATTTTTATATTAAAATAAGAATAAAATAGAT
1 AAATATAGTT-TTAAGTGAAGATAATAA-AAAATATTTTTATATTAAAATAAGAATAAAATAGAT
428048 TTATAAGTTAAGACAAAA-ATAAA-ATATATTTTCAACTTTAAATAAGAATA
64 TTATAAGTTAAGACAAAATA-AAATATATATTTTCAACTTTAAAT-A-AATA
* *
428098 AAATATAGTTTTAAGTGAATATAATAAAAAATATTTTTATATTAAAATTAGAATAAAATAGATTT
1 AAATATAGTTTTAAGTGAAGATAATAAAAAATATTTTTATATTAAAATAAGAATAAAATAGATTT
428163 ATAAGTTAAGACAAAATAAAATATAT
66 ATAAGTTAAGACAAAATAAAATATAT
428189 CTTTGAAAGT
Statistics
Matches: 85, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
113 56 0.66
114 20 0.24
115 9 0.11
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.36
Consensus pattern (112 bp):
AAATATAGTTTTAAGTGAAGATAATAAAAAATATTTTTATATTAAAATAAGAATAAAATAGATTT
ATAAGTTAAGACAAAATAAAATATATATTTTCAACTTTAAATAAATA
Done.