Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8646418
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 22 of 43
Found at i:4529862 original size:6 final size:6
Alignment explanation
Indices: 4529853--4529887 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
4529843 TTGTCGTTCT
4529853 TTTATC TTTATC TTTATC TTTATC TTTATC TTTAT
1 TTTATC TTTATC TTTATC TTTATC TTTATC TTTAT
4529888 TTCTCTGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTATC
Found at i:4531380 original size:13 final size:16
Alignment explanation
Indices: 4531347--4531385 Score: 57
Period size: 13 Copynumber: 2.6 Consensus size: 16
4531337 ATTAAATATT
4531347 TTTAAAATATATATAA
1 TTTAAAATATATATAA
4531363 TTTAAAATAT-T-T-A
1 TTTAAAATATATATAA
4531376 TTTAAAATAT
1 TTTAAAATAT
4531386 CAGAAAATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.48
14 1 0.04
15 1 0.04
16 10 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTAAAATATATATAA
Found at i:4531603 original size:23 final size:23
Alignment explanation
Indices: 4531577--4531631 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
4531567 AAACAAACAT
4531577 ATAAAATTAAAACAATAACTA-AA
1 ATAAAATTAAAACAA-AACTATAA
* *
4531600 AT-AAATGAAAATAAAACTATAA
1 ATAAAATTAAAACAAAACTATAA
*
4531622 AAAAAATTAA
1 ATAAAATTAA
4531632 TGACTAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 5 0.19
22 13 0.50
23 8 0.31
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (23 bp):
ATAAAATTAAAACAAAACTATAA
Found at i:4531627 original size:27 final size:28
Alignment explanation
Indices: 4531579--4531634 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
4531569 ACAAACATAT
**
4531579 AAAATTAAAACAATAACTAAAATAAATG
1 AAAATTAAAACAATAAAAAAAATAAATG
* *
4531607 AAAA-TAAAACTATAAAAAAAATTAATG
1 AAAATTAAAACAATAAAAAAAATAAATG
4531634 A
1 A
4531635 CTAAATTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.21
Consensus pattern (28 bp):
AAAATTAAAACAATAAAAAAAATAAATG
Found at i:4532500 original size:3 final size:3
Alignment explanation
Indices: 4532494--4532555 Score: 51
Period size: 3 Copynumber: 21.3 Consensus size: 3
4532484 AAAATTTATT
* * *
4532494 TAA TAA TAA TAA TAA TAA -AA TTA TTA TAG TAA TAA TAA -AA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4532539 TAAA TAA -AA TAAA TAA T
1 T-AA TAA TAA T-AA TAA T
4532556 GAGTAATGAG
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
2 8 0.16
3 35 0.71
4 6 0.12
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:4532507 original size:26 final size:26
Alignment explanation
Indices: 4532478--4532535 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
4532468 TTGGATCTGA
4532478 AATAATAAAATTTATT-TAATAATAAT
1 AATAATAAAA-TTATTATAATAATAAT
*
4532504 AATAATAAAATTATTATAGTAATAAT
1 AATAATAAAATTATTATAATAATAAT
4532530 AA-AATA
1 AATAATA
4532536 TAATAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 9 0.30
26 21 0.70
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
AATAATAAAATTATTATAATAATAAT
Found at i:4532541 original size:13 final size:13
Alignment explanation
Indices: 4532523--4532555 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
4532513 ATTATTATAG
4532523 TAATAATAAAATA
1 TAATAATAAAATA
4532536 TAATAAATAAAATA
1 TAAT-AATAAAATA
4532550 -AATAAT
1 TAATAAT
4532556 GAGTAATGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.16
13 7 0.37
14 9 0.47
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
TAATAATAAAATA
Found at i:4532544 original size:17 final size:18
Alignment explanation
Indices: 4532499--4532545 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
4532489 TTATTTAATA
4532499 ATAAT-AATAATAAAATT
1 ATAATAAATAATAAAATT
*
4532516 ATTATAGTAATAATAAAA-T
1 ATAATA--AATAATAAAATT
4532535 ATAATAAATAA
1 ATAATAAATAA
4532546 AATAAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 9 0.36
19 6 0.24
20 10 0.40
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
ATAATAAATAATAAAATT
Found at i:4533848 original size:12 final size:12
Alignment explanation
Indices: 4533831--4533862 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
4533821 ACCGTTAAGA
4533831 AATTATATTTAT
1 AATTATATTTAT
4533843 AATTATATTTAT
1 AATTATATTTAT
4533855 AATT-TATT
1 AATTATATT
4533863 ATATTTTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
AATTATATTTAT
Found at i:4533910 original size:2 final size:2
Alignment explanation
Indices: 4533903--4534016 Score: 103
Period size: 2 Copynumber: 59.5 Consensus size: 2
4533893 TTCTATTATT
* * *
4533903 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA -A AA TT TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
4533943 CA AA TA -A TT TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
4533983 TT TA TA TA TA T- TA TA TT TA TA TT TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4534017 TTATCATTTT
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
1 5 0.06
2 85 0.94
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4534017 original size:6 final size:6
Alignment explanation
Indices: 4533955--4534025 Score: 76
Period size: 6 Copynumber: 12.2 Consensus size: 6
4533945 AATAATTTAA
* * * *
4533955 TATATA TATATA TATATA TATATA TATATT TATA-- TATA-T TATATT
1 TATATT TATATT TATATT TATATT TATATT TATATT TATATT TATATT
4534000 TATATT TATATT TATATT TATCATT T
1 TATATT TATATT TATATT TAT-ATT T
4534026 TTAATTTTTA
Statistics
Matches: 61, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 49 0.80
7 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (6 bp):
TATATT
Found at i:4534028 original size:21 final size:20
Alignment explanation
Indices: 4533967--4534038 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
4533957 TATATATATA
* * *
4533967 TATATATATATATATATTTA
1 TATATTTATATTTATATTTT
4533987 TATATATTATATTTATA--TT
1 TATAT-TTATATTTATATTTT
4534006 TATATTTATATTTATCATTTT
1 TATATTTATATTTAT-ATTTT
*
4534027 TA-ATTTTTATTT
1 TATATTTATATTT
4534039 CTTTGAAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
18 10 0.23
19 7 0.16
20 14 0.32
21 13 0.30
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (20 bp):
TATATTTATATTTATATTTT
Found at i:4534614 original size:12 final size:12
Alignment explanation
Indices: 4534597--4534627 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
4534587 TACGGGAAAA
4534597 TTAAAATTTATT
1 TTAAAATTTATT
4534609 TTAAAATTTATT
1 TTAAAATTTATT
4534621 TTAAAAT
1 TTAAAAT
4534628 ATAGATTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TTAAAATTTATT
Found at i:4534642 original size:22 final size:22
Alignment explanation
Indices: 4534614--4534954 Score: 465
Period size: 22 Copynumber: 15.6 Consensus size: 22
4534604 TTATTTTAAA
*
4534614 ATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAAATATGGATTG
**
4534636 ATTTATTTTAAAATATGGA-AA
1 ATTTATTTTAAAATATGGATTG
4534657 ATTTTATTTTAAAATATGGATTG
1 A-TTTATTTTAAAATATGGATTG
4534680 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGGATTG
**
4534702 ATTTATTTTAAAATAT-GA-AA
1 ATTTATTTTAAAATATGGATTG
*
4534722 AATTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGGATTG
4534744 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGGATTG
*
4534766 ATTTATTTTAAAATATGAATTG
1 ATTTATTTTAAAATATGGATTG
4534788 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGGATTG
* **
4534810 ATTTATTTTAAATTATGGA-AA
1 ATTTATTTTAAAATATGGATTG
*
4534831 ATTTTATTTTAAAATATAGATTG
1 A-TTTATTTTAAAATATGGATTG
* * ***
4534854 ATTTATTTTAAAATGTGAAAAA
1 ATTTATTTTAAAATATGGATTG
*
4534876 ATTTATTTTAAAATATTGATTG
1 ATTTATTTTAAAATATGGATTG
4534898 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGGATTG
*
4534920 ATTTATTTTAAAATATGAATTG
1 ATTTATTTTAAAATATGGATTG
*
4534942 ATTTATTTAAAAA
1 ATTTATTTTAAAA
4534955 AAAAATATTA
Statistics
Matches: 278, Mismatches: 35, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
20 15 0.05
21 6 0.02
22 255 0.92
23 2 0.01
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (22 bp):
ATTTATTTTAAAATATGGATTG
Found at i:4535381 original size:28 final size:28
Alignment explanation
Indices: 4535349--4535403 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
4535339 GAAGAATTAA
4535349 TCAAATTAGTCCAATAAAATCAAATATT
1 TCAAATTAGTCCAATAAAATCAAATATT
4535377 TCAAATTAGTCCAATAAAATCAAATAT
1 TCAAATTAGTCCAATAAAATCAAATAT
4535404 GAGCATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.51, C:0.15, G:0.04, T:0.31
Consensus pattern (28 bp):
TCAAATTAGTCCAATAAAATCAAATATT
Found at i:4535718 original size:20 final size:20
Alignment explanation
Indices: 4535695--4535732 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4535685 ATATTAGTCT
* *
4535695 CTAAACTTTTATTTTCATCC
1 CTAAACTATTATTATCATCC
4535715 CTAAACTATTATTATCAT
1 CTAAACTATTATTATCAT
4535733 TCTAAATTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (20 bp):
CTAAACTATTATTATCATCC
Found at i:4535816 original size:60 final size:60
Alignment explanation
Indices: 4535707--4535832 Score: 166
Period size: 60 Copynumber: 2.1 Consensus size: 60
4535697 AAACTTTTAT
* * * *
4535707 TTTCATCCCTAAACTATTATTATCATTCTAAATTAGTCCTCAAATTTTTGAACATTTCAA
1 TTTCATCCCAAAACTATGAATATCATTCTAAATTAGTCCTCAAACTTTTGAACATTTCAA
* *
4535767 TTTCATCCCAAAACTATGACAT-TCATTCTAAGTTGGT-CTCCAAACTTTTGAACATTTCAA
1 TTTCATCCCAAAACTATGA-ATATCATTCTAAATTAGTCCT-CAAACTTTTGAACATTTCAA
4535827 TTTCAT
1 TTTCAT
4535833 TTCAAGCTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
59 2 0.03
60 55 0.95
61 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (60 bp):
TTTCATCCCAAAACTATGAATATCATTCTAAATTAGTCCTCAAACTTTTGAACATTTCAA
Found at i:4536072 original size:59 final size:59
Alignment explanation
Indices: 4535970--4536128 Score: 176
Period size: 59 Copynumber: 2.7 Consensus size: 59
4535960 GACGAATTTG
* ** * *
4535970 GGGATGAAATTGAAATATTCAAAAGTTTGTGGATCAATATAGAAAGAGTGTCATAGTTTA
1 GGGATGAAATTAAAATATTCAAAAGTTTAAGGAT-AATTTAGAAAGAGAGTCATAGTTTA
**
4536030 GGGATG-AATTAAAATATTCAAAAGTTTAAGGACTAATTTAGAATTAGAGTCATAGTTTA
1 GGGATGAAATTAAAATATTCAAAAGTTTAAGGA-TAATTTAGAAAGAGAGTCATAGTTTA
* * * * *
4536089 GGAATGAAAATAGATTATTCAAAAGTCTAAGGAATAATTT
1 GGGATGAAATTAAAATATTCAAAAGTTTAAGG-ATAATTT
4536129 TAAATGAGGG
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
59 49 0.58
60 34 0.40
61 1 0.01
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (59 bp):
GGGATGAAATTAAAATATTCAAAAGTTTAAGGATAATTTAGAAAGAGAGTCATAGTTTA
Found at i:4536145 original size:60 final size:59
Alignment explanation
Indices: 4535973--4536147 Score: 156
Period size: 59 Copynumber: 2.9 Consensus size: 59
4535963 GAATTTGGGG
* * ** * * * *
4535973 ATGAAATTGAAATATTCAAAAGTTTGTGG-ATCAATATAGAAAGAGTGTCATAGTTTAGGG
1 ATGAAA-TAAAATATTCAAAAGTCTAAGGAAT-AATTTAGAATGAGAGTCATAGTTTAGGA
* * * *
4536033 ATGAATTAAAATATTCAAAAGTTTAAGGACTAATTTAGAATTAGAGTCATAGTTTAGGA
1 ATGAAATAAAATATTCAAAAGTCTAAGGAATAATTTAGAATGAGAGTCATAGTTTAGGA
* * * *
4536092 ATGAAAATAGATTATTCAAAAGTCTAAGGAATAATTTTA-AATGAGGGTTATAGTTT
1 ATG-AAATAAAATATTCAAAAGTCTAAGGAATAA-TTTAGAATGAGAGTCATAGTTT
4536148 GGGGGGTATA
Statistics
Matches: 94, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
59 45 0.48
60 45 0.48
61 4 0.04
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.34
Consensus pattern (59 bp):
ATGAAATAAAATATTCAAAAGTCTAAGGAATAATTTAGAATGAGAGTCATAGTTTAGGA
Found at i:4538193 original size:51 final size:51
Alignment explanation
Indices: 4538117--4538213 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 51
4538107 GAATCAAGTA
*
4538117 TAATAAATCATTCAAACTCCAAAATCTCAGTATAACAAAAATGTTATGATG
1 TAATAAATCATTAAAACTCCAAAATCTCAGTATAACAAAAATGTTATGATG
* * *
4538168 TAATAAAT-ACTTAAAATTCCAAAATCTCATTATGACAAAAATGTTA
1 TAATAAATCA-TTAAAACTCCAAAATCTCAGTATAACAAAAATGTTA
4538214 AAATCTTCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 1 0.02
51 40 0.98
ACGTcount: A:0.48, C:0.14, G:0.06, T:0.31
Consensus pattern (51 bp):
TAATAAATCATTAAAACTCCAAAATCTCAGTATAACAAAAATGTTATGATG
Found at i:4539738 original size:2 final size:2
Alignment explanation
Indices: 4539727--4539791 Score: 116
Period size: 2 Copynumber: 33.5 Consensus size: 2
4539717 TAACATTAAC
4539727 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4539768 TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4539792 TGTAATCCCA
Statistics
Matches: 61, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
1 2 0.03
2 59 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:4544842 original size:24 final size:23
Alignment explanation
Indices: 4544790--4544917 Score: 107
Period size: 24 Copynumber: 5.3 Consensus size: 23
4544780 ATAGTGCCAG
*
4544790 GAGTACACGAATGTACTAAATACAG
1 GAGTACAC-AATGTACT-AATACAA
*
4544815 GAGTACACAATGGTACTAATTCAA
1 GAGTACACAAT-GTACTAATACAA
* * *
4544839 GAGTGCAGAAATGCACTAATACATA
1 GAGTACA-CAATGTACTAATACA-A
4544864 -AGTACACAAATGTACTAATACAA
1 GAGTACAC-AATGTACTAATACAA
**
4544887 GAGTACGTAATGGTA-TGAATACAA
1 GAGTACACAAT-GTACT-AATACAA
4544911 GAGTACA
1 GAGTACA
4544918 TAAATATACT
Statistics
Matches: 84, Mismatches: 12, Indels: 15
0.76 0.11 0.14
Matches are distributed among these distances:
23 5 0.06
24 62 0.74
25 17 0.20
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.22
Consensus pattern (23 bp):
GAGTACACAATGTACTAATACAA
Found at i:4545380 original size:67 final size:68
Alignment explanation
Indices: 4545294--4545429 Score: 256
Period size: 67 Copynumber: 2.0 Consensus size: 68
4545284 AACATTTAAG
4545294 GTAACATATAACATAAGAGTATCATAAAATGCATGATTTACCATAATTTCATATTCTGGCAGTTT
1 GTAACATAT-ACATAAGAGTATCATAAAATGCATGATTTACCATAATTTCATATTCTGGCAGTTT
4545359 GCAC
65 GCAC
4545363 GTAACATAT-CATAAGAGTATCATAAAATGCATGATTTACCATAATTTCATATTCTGGCAGTTTG
1 GTAACATATACATAAGAGTATCATAAAATGCATGATTTACCATAATTTCATATTCTGGCAGTTTG
4545427 CAC
66 CAC
4545430 TACCCTCAAA
Statistics
Matches: 67, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
67 58 0.87
69 9 0.13
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (68 bp):
GTAACATATACATAAGAGTATCATAAAATGCATGATTTACCATAATTTCATATTCTGGCAGTTTG
CAC
Found at i:4547344 original size:19 final size:19
Alignment explanation
Indices: 4547318--4547358 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
4547308 ATAATAATTA
*
4547318 TTATTTTTATTATTGTTTAT
1 TTATTTTT-GTATTGTTTAT
*
4547338 TTATTTTTGTTTTGTTTAT
1 TTATTTTTGTATTGTTTAT
4547357 TT
1 TT
4547359 CAGGTCCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (19 bp):
TTATTTTTGTATTGTTTAT
Found at i:4549826 original size:20 final size:22
Alignment explanation
Indices: 4549801--4549840 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
4549791 TGTTGTATAT
4549801 AGCCG-TTGGGGATG-TTTTGG
1 AGCCGTTTGGGGATGATTTTGG
4549821 AGCCGTTTGGGGATGATTTT
1 AGCCGTTTGGGGATGATTTT
4549841 TCTACTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.12, C:0.10, G:0.40, T:0.38
Consensus pattern (22 bp):
AGCCGTTTGGGGATGATTTTGG
Found at i:4549994 original size:41 final size:41
Alignment explanation
Indices: 4549936--4550015 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
4549926 AGCCGTTGCA
* * ** *
4549936 GCCTTGATGCATGGATGCATGGCAGGATACATCGATGCATG
1 GCCTTAATGCATCGATGCACAGAAGGATACATCGATGCATG
*
4549977 GCCTTAATGCATCGATGCACAGAAGGATGCATCGATGCA
1 GCCTTAATGCATCGATGCACAGAAGGATACATCGATGCA
4550016 CTAATTGCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (41 bp):
GCCTTAATGCATCGATGCACAGAAGGATACATCGATGCATG
Found at i:4550241 original size:30 final size:30
Alignment explanation
Indices: 4550194--4550253 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
4550184 AAACTTTGAA
4550194 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
*
4550223 TAAATTTAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
4550254 CCTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 10 0.36
30 11 0.39
31 7 0.25
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:4551532 original size:19 final size:20
Alignment explanation
Indices: 4551489--4551536 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
4551479 TCTAAATCCT
*
4551489 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* *
4551509 CTTTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
4551528 TTTTCAAAA
1 TTTTCAAAA
4551537 GAAAATCGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:4552455 original size:34 final size:32
Alignment explanation
Indices: 4552393--4552462 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
4552383 ACCTTACAAC
* *
4552393 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACCTT
*
4552425 TCCCTAGCTTTTACACGGGATAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACCTT
4552459 TCCC
1 TCCC
4552463 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACCTT
Found at i:4552702 original size:20 final size:22
Alignment explanation
Indices: 4552677--4552716 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
4552667 TGTTGTATAT
4552677 AGCCG-TTGGGGATG-TTTTAG
1 AGCCGTTTGGGGATGATTTTAG
4552697 AGCCGTTTGGGGATGATTTT
1 AGCCGTTTGGGGATGATTTT
4552717 TCTACTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.15, C:0.10, G:0.38, T:0.38
Consensus pattern (22 bp):
AGCCGTTTGGGGATGATTTTAG
Found at i:4552846 original size:21 final size:21
Alignment explanation
Indices: 4552822--4552861 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
4552812 AGCCGTTGCA
* *
4552822 GCCTTGATGCATGGATGCATG
1 GCCTTAATGCATCGATGCATG
4552843 GCCTTAATGCATCGATGCA
1 GCCTTAATGCATCGATGCA
4552862 CAGAAGGATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.28
Consensus pattern (21 bp):
GCCTTAATGCATCGATGCATG
Found at i:4552874 original size:20 final size:20
Alignment explanation
Indices: 4552849--4552902 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
4552839 CATGGCCTTA
4552849 ATGCATCGATGCACAGAAGG
1 ATGCATCGATGCACAGAAGG
4552869 ATGCATCGATGCACAGAAGG
1 ATGCATCGATGCACAGAAGG
4552889 ATGCATCGATGCAC
1 ATGCATCGATGCAC
4552903 TAATTACATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.33, C:0.22, G:0.28, T:0.17
Consensus pattern (20 bp):
ATGCATCGATGCACAGAAGG
Found at i:4552996 original size:21 final size:20
Alignment explanation
Indices: 4552924--4553021 Score: 108
Period size: 21 Copynumber: 4.7 Consensus size: 20
4552914 GGTGTTTGAG
*
4552924 TGCATGGATGCACTGCATGA
1 TGCATGGATGCACTGCAGGA
* *
4552944 TGCATAGATGCAGTAGTGCAGG-
1 TGCATGGATGC---ACTGCAGGA
*
4552966 TGCATAGATGCACTGCAGGGA
1 TGCATGGATGCACTGCA-GGA
4552987 TGCATGGATGCACTGCAGGGA
1 TGCATGGATGCACTGCA-GGA
4553008 TGCATGGATGCACT
1 TGCATGGATGCACT
4553022 TTGACACCCT
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
19 5 0.07
20 12 0.18
21 34 0.50
22 11 0.16
23 6 0.09
ACGTcount: A:0.26, C:0.18, G:0.34, T:0.22
Consensus pattern (20 bp):
TGCATGGATGCACTGCAGGA
Found at i:4553456 original size:23 final size:23
Alignment explanation
Indices: 4553421--4553466 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
4553411 CAAGGAGTAT
**
4553421 CGATACCTAAAGGGTAGTATCGA
1 CGATACCTAAAGGAAAGTATCGA
4553444 CGATACC-ATAAGGAAAGTATCGA
1 CGATACCTA-AAGGAAAGTATCGA
4553467 TACCATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (23 bp):
CGATACCTAAAGGAAAGTATCGA
Found at i:4556762 original size:20 final size:20
Alignment explanation
Indices: 4556739--4556777 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4556729 GCAGAGTTGC
* *
4556739 AGGTTTAACTCCAGATAGAG
1 AGGTTGAACTCCAAATAGAG
*
4556759 AGGTTGAATTCCAAATAGA
1 AGGTTGAACTCCAAATAGA
4556778 AGTAATGCCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (20 bp):
AGGTTGAACTCCAAATAGAG
Found at i:4558890 original size:3 final size:3
Alignment explanation
Indices: 4558882--4558910 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
4558872 TTTTTCAGCA
4558882 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4558911 AAATTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4560684 original size:17 final size:18
Alignment explanation
Indices: 4560651--4560689 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
4560641 CACTTTTCTG
*
4560651 ATATTTCTAAGTAAATAA
1 ATATTTCTAAATAAATAA
*
4560669 ATATTT-TAAATAAATAT
1 ATATTTCTAAATAAATAA
4560686 ATAT
1 ATAT
4560690 ATATATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
ATATTTCTAAATAAATAA
Found at i:4562735 original size:19 final size:19
Alignment explanation
Indices: 4562711--4562747 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4562701 ATCGGGAAAG
*
4562711 GGTATCGATACCAAGGCTC
1 GGTATCAATACCAAGGCTC
*
4562730 GGTATCAATACCACGGCT
1 GGTATCAATACCAAGGCT
4562748 AGGGAAGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (19 bp):
GGTATCAATACCAAGGCTC
Found at i:4563389 original size:21 final size:21
Alignment explanation
Indices: 4563363--4563406 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
4563353 TCGAGGGTTC
*
4563363 TACGAGGTCCTTCGGGATATA
1 TACGAGGTCCTTCGGGACATA
4563384 TACGAGGTCCTTCGGGACATA
1 TACGAGGTCCTTCGGGACATA
4563405 TA
1 TA
4563407 TAATGTCCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (21 bp):
TACGAGGTCCTTCGGGACATA
Found at i:4563414 original size:21 final size:21
Alignment explanation
Indices: 4563367--4563423 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
4563357 GGGTTCTACG
* *
4563367 AGGTCCTTCGGGATATATACG
1 AGGTCCTTCGGGACATATACA
*
4563388 AGGTCCTTCGGGACATATATA
1 AGGTCCTTCGGGACATATACA
* *
4563409 ATGTCCTTCGAGACA
1 AGGTCCTTCGGGACA
4563424 AATTTTATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (21 bp):
AGGTCCTTCGGGACATATACA
Found at i:4563977 original size:16 final size:18
Alignment explanation
Indices: 4563945--4563977 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
4563935 TTAAATTTTC
4563945 AACGATTTTGTAAAAGTA
1 AACGATTTTGTAAAAGTA
4563963 AACG-TTTTG-AAAAGT
1 AACGATTTTGTAAAAGT
4563978 CAATGTGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (18 bp):
AACGATTTTGTAAAAGTA
Found at i:4565287 original size:18 final size:18
Alignment explanation
Indices: 4565229--4565289 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
4565219 TGCATTGATG
*
4565229 AATTATGTTTTAATGTTTT
1 AATT-TGTTTTATTGTTTT
*
4565248 AACTTGTATTT-TT-TTTT
1 AATTTGT-TTTATTGTTTT
4565265 AAATTTGTTTTATTGTTTT
1 -AATTTGTTTTATTGTTTT
4565284 AATTTG
1 AATTTG
4565290 GTTTGATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
17 7 0.20
18 18 0.51
19 10 0.29
ACGTcount: A:0.23, C:0.02, G:0.10, T:0.66
Consensus pattern (18 bp):
AATTTGTTTTATTGTTTT
Found at i:4573767 original size:117 final size:117
Alignment explanation
Indices: 4573553--4573844 Score: 401
Period size: 117 Copynumber: 2.5 Consensus size: 117
4573543 GGAAGTATTT
** * * *
4573553 CAGGCTCCTTTGTTGTGTGCTCAAGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGG
1 CAGGCTCCTTTACTGTGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTACTGG
* * *
4573618 GAAACCTACACATTATAGTGATTGGAGTGACTGGATGGGGAAGTTATTACTG
66 GAAACCTACACATTATAGTGATTGGAGCGACTGGATGGAGAAGTTATTACTA
*
4573670 CATGCTCCTTTACTGTGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTACTGG
1 CAGGCTCCTTTACTGTGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTACTGG
* * * * *
4573735 GGAACCTATACATTGTAGTTA-TGGAAGCGACTGGATGGAGACGTTATTACTA
66 GAAACCTACACATTATAGTGATTGG-AGCGACTGGATGGAGAAGTTATTACTA
*
4573787 CAGGCTCC-TCAGCT-TCGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATG
1 CAGGCTCCTTTA-CTGT-GTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATG
4573845 TTTCGGGGAA
Statistics
Matches: 156, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
116 6 0.04
117 150 0.96
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.32
Consensus pattern (117 bp):
CAGGCTCCTTTACTGTGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTACTGG
GAAACCTACACATTATAGTGATTGGAGCGACTGGATGGAGAAGTTATTACTA
Found at i:4578561 original size:22 final size:23
Alignment explanation
Indices: 4578533--4578577 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
4578523 CTATATTGGA
4578533 CAAAGTTGCATGATA-AAAAACT
1 CAAAGTTGCATGATAGAAAAACT
4578555 CAAAGTTGCATGATAGAAAAACT
1 CAAAGTTGCATGATAGAAAAACT
4578578 TTGGGTCCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (23 bp):
CAAAGTTGCATGATAGAAAAACT
Found at i:4580019 original size:29 final size:29
Alignment explanation
Indices: 4579960--4580058 Score: 121
Period size: 29 Copynumber: 3.4 Consensus size: 29
4579950 ACCAGATGAC
4579960 ATTTTGGGAA-TTAATTC-AAAATGGGTGCT
1 ATTTTGGGAATTTAATTCGAAAA--GGTGCT
* *
4579989 ATTCTGGGAATTTAATTCGAAAAGGTCCT
1 ATTTTGGGAATTTAATTCGAAAAGGTGCT
**
4580018 ATTTTTAGAATTTAATTCGAAAAGGTGCT
1 ATTTTGGGAATTTAATTCGAAAAGGTGCT
*
4580047 ATTTTGGTAATT
1 ATTTTGGGAATT
4580059 ATTTTAAAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
29 48 0.81
30 7 0.12
31 4 0.07
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (29 bp):
ATTTTGGGAATTTAATTCGAAAAGGTGCT
Found at i:4581283 original size:113 final size:110
Alignment explanation
Indices: 4581003--4581284 Score: 358
Period size: 110 Copynumber: 2.5 Consensus size: 110
4580993 CAGGCTCCTT
* * *
4581003 TGCTGTGTGCTCAGGGTTAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACA
1 TGCTGTGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGTTTCTGGGGAACCTACA
* *
4581068 TTATAGTGATGGAGGGCTGGATGGGGAAGTTATTACTCAGACTCC
66 TTATAGTGATGGAGGACTGGATGGAGAAGTTATTACTCAGACTCC
* *
4581113 TGCTGTGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTAGGTGTAT-TGTACTGGGGAACCTAC
1 TGCTGTGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGT-TTCTGGGGAACCTAC
* * * *
4581177 ACTTGTAGTTATGGAAGCGACTGGATGGAGACGTTATTACTGCAGGCTCC
65 A-TTATAGTGATGG-AG-GACTGGATGGAGAAGTTATTACT-CAGACTCC
4581227 TCAGCT-TCGTGCTTA-GGTAAGTCCTTACTGGTG-GCAGGTGGGTGTATGTTTC-GGGGAA
1 T--GCTGT-GTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGTTTCTGGGGAA
4581285 ATATATAAAA
Statistics
Matches: 150, Mismatches: 13, Indels: 15
0.84 0.07 0.08
Matches are distributed among these distances:
110 59 0.39
111 10 0.07
112 2 0.01
113 26 0.17
114 23 0.15
115 20 0.13
116 10 0.07
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.31
Consensus pattern (110 bp):
TGCTGTGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGTTTCTGGGGAACCTACA
TTATAGTGATGGAGGACTGGATGGAGAAGTTATTACTCAGACTCC
Found at i:4584314 original size:35 final size:35
Alignment explanation
Indices: 4584247--4584314 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
4584237 CTATTTTTAA
*
4584247 TTATATTTTCTTTAAAAAATTTAAATTCATAAAAT
1 TTATATTTTCTTTAAAAAATTTAAAATCATAAAAT
* *
4584282 TTATAATTTTGTTTACAAAATTTAAAAT-ATAAA
1 TTAT-ATTTTCTTTAAAAAATTTAAAATCATAAA
4584315 TAGGTTTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 9 0.31
36 20 0.69
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (35 bp):
TTATATTTTCTTTAAAAAATTTAAAATCATAAAAT
Found at i:4585000 original size:35 final size:35
Alignment explanation
Indices: 4584954--4585076 Score: 169
Period size: 35 Copynumber: 3.5 Consensus size: 35
4584944 AAAAGATGAA
4584954 CATTTGAATCGAAAGTGCTCATGCTTCCTTCTGTT
1 CATTTGAATCGAAAGTGCTCATGCTTCCTTCTGTT
*
4584989 CATTTGAATCGAAAGTGCTGATGCTTCCTT-TCGTT
1 CATTTGAATCGAAAGTGCTCATGCTTCCTTCT-GTT
* *
4585024 CTTCTTGAATTGAAAGTGC-CGATGCTTCCTTCTGTT
1 CAT-TTGAATCGAAAGTGCTC-ATGCTTCCTTCTGTT
*
4585060 CACTTGAATCGAAAGTG
1 CATTTGAATCGAAAGTG
4585077 TTGATACTTC
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
34 1 0.01
35 47 0.61
36 28 0.36
37 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (35 bp):
CATTTGAATCGAAAGTGCTCATGCTTCCTTCTGTT
Found at i:4585073 original size:71 final size:71
Alignment explanation
Indices: 4584957--4585097 Score: 221
Period size: 71 Copynumber: 2.0 Consensus size: 71
4584947 AGATGAACAT
* * *
4584957 TTGAATCGAAAGTGCTCATGCTTCCTTCTGTTCATTTGAATCGAAAGTGCTGATGCTTCCTTTCG
1 TTGAATCGAAAGTGCTCATGCTTCCTTCTGTTCACTTGAATCGAAAGTGCTGATACTTCATTTCG
4585022 TTCTTC
66 TTCTTC
* *
4585028 TTGAATTGAAAGTGC-CGATGCTTCCTTCTGTTCACTTGAATCGAAAGTGTTGATACTTCATTTC
1 TTGAATCGAAAGTGCTC-ATGCTTCCTTCTGTTCACTTGAATCGAAAGTGCTGATACTTCATTTC
4585092 GTTCTT
65 GTTCTT
4585098 ATTCACCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
70 1 0.02
71 63 0.98
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (71 bp):
TTGAATCGAAAGTGCTCATGCTTCCTTCTGTTCACTTGAATCGAAAGTGCTGATACTTCATTTCG
TTCTTC
Found at i:4585109 original size:21 final size:21
Alignment explanation
Indices: 4585083--4585123 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4585073 AGTGTTGATA
*
4585083 CTTCATTTCGTTCTTATTCAC
1 CTTCATCTCGTTCTTATTCAC
* *
4585104 CTTCATCTCTTTCTTCTTCA
1 CTTCATCTCGTTCTTATTCA
4585124 TCCTCTTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.32, G:0.02, T:0.54
Consensus pattern (21 bp):
CTTCATCTCGTTCTTATTCAC
Found at i:4585442 original size:15 final size:15
Alignment explanation
Indices: 4585422--4585450 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4585412 AAGCTCCCTC
4585422 AGCAATTGACCACTT
1 AGCAATTGACCACTT
4585437 AGCAATTGACCACT
1 AGCAATTGACCACT
4585451 CGTAACATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (15 bp):
AGCAATTGACCACTT
Found at i:4588883 original size:574 final size:574
Alignment explanation
Indices: 4587795--4588935 Score: 2032
Period size: 574 Copynumber: 2.0 Consensus size: 574
4587785 AAATCTAAAC
* *
4587795 ACAACCAATAATCATCAAACATGCATCATTCTTATAACATATATAAGGTCAATCATTAAATTTAC
1 ACAACCAATAATCATCAAACATGCATCATTCTTATAAAATATATAAGGTCAACCATTAAATTTAC
4587860 TTTAACATACAAGTCATCTTTGGATGTAACTTATATATTAATTAAACAAAGTTCATAACCTACTT
66 TTTAACATACAAGTCATCTTTGGATGTAACTTATATATTAATTAAACAAAGTTCATAACCTACTT
*
4587925 CAATTATTATTAACCATGAATAAGACCTACCTTTGGGTAATCGTATTACTACATTTTAATAACTA
131 CAATTATTATTAACCATGAATAAGACCTACCTTTGGGTAATCGAATTACTACATTTTAATAACTA
*
4587990 TAAATGTTTATTATTTTTAAATGTCATTTATGATGCTACATCAAATAAACATTTATAAACATAAT
196 TAAATGTTTATTATTTTTAAATGTAATTTATGATGCTACATCAAATAAACATTTATAAACATAAT
*
4588055 ATAAATCATTTGATGAATTTCGAGTGGGTCGCTTTGGTGACTAACACACTCACTAAAATATTAAA
261 ATAAATCATTTAATGAATTTCGAGTGGGTCGCTTTGGTGACTAACACACTCACTAAAATATTAAA
*
4588120 TATTTAAATCATGATCCAAAATTGGTTAATGTGATCCTACACTTGCCACGACAACTTCACTTGTC
326 GATTTAAATCATGATCCAAAATTGGTTAATGTGATCCTACACTTGCCACGACAACTTCACTTGTC
* * * *
4588185 ACGGTAACGTTATTAACTTTACTTTTCCTTGGCAACTTCACTTGTCACGGCAACGTCATTAACCA
391 ACGGTAACATCATTAACTTTACTTTGCCTTGGCAACTTCACTTGTCAAGGCAACGTCATTAACCA
* *
4588250 TCAAACTGGGATCATATCATTGTTCCTTATCAATTAACAATCAATCTATCATCAATATTATAATA
456 TCAAACCGGGATCATATCATTGTTCCTTATCAATTAACAATCAATATATCATCAATATTATAATA
*
4588315 AATTGTCAATTTACAACTTCAATTAATCTTCAATAAGAAAACACTCATTAAATT
521 AATTGTCAATTTACAACTTCAATTAATATTCAATAAGAAAACACTCATTAAATT
*
4588369 ACAACCAATAATCATCAAACATGTATCATTCTTATAAAATATATAAGGTCAACCATTAAATTTAC
1 ACAACCAATAATCATCAAACATGCATCATTCTTATAAAATATATAAGGTCAACCATTAAATTTAC
4588434 TTTAACATACAAGTCATCTTTGGATGTAACTTATATATTAATTAAACAAAGTTCATAACCTACTT
66 TTTAACATACAAGTCATCTTTGGATGTAACTTATATATTAATTAAACAAAGTTCATAACCTACTT
*
4588499 CAATTATTATTAACCATGAGTAAGACCTACCTTTGGGTAATCGAATTACTACATTTTAATAACTA
131 CAATTATTATTAACCATGAATAAGACCTACCTTTGGGTAATCGAATTACTACATTTTAATAACTA
*
4588564 TAAATGTTTATTATTTTTAAATGTAATTTATGATGCTACATCAAATAAACATTTATAAATATAAT
196 TAAATGTTTATTATTTTTAAATGTAATTTATGATGCTACATCAAATAAACATTTATAAACATAAT
* *
4588629 ATAAATTATTTAATGAATTTTGAGTGGGTCGCTTTGGTGACTAACACACTCACTAAAATATTAAA
261 ATAAATCATTTAATGAATTTCGAGTGGGTCGCTTTGGTGACTAACACACTCACTAAAATATTAAA
* * * *
4588694 GATTTAAATCATGATCCAAAATTGTTTGATGTGATCCTACACTTTCCATGACAACTTCACTTGTC
326 GATTTAAATCATGATCCAAAATTGGTTAATGTGATCCTACACTTGCCACGACAACTTCACTTGTC
* *
4588759 ACGGTAACATCATTAACTTTAC-TTGCCTTGGCTACTTCACTTGTCCAAGGCAACGTCATTCACC
391 ACGGTAACATCATTAACTTTACTTTGCCTTGGCAACTTCACTTGT-CAAGGCAACGTCATTAACC
4588823 ATCAAACCGGGATCATATCATTGTTCCTTATCAATTAACAATCAATATATCATCAATATTATAAT
455 ATCAAACCGGGATCATATCATTGTTCCTTATCAATTAACAATCAATATATCATCAATATTATAAT
* *
4588888 CAATTGTCAATTTACAACTTCAATTAATATTCAATAAGAAAATACTCA
520 AAATTGTCAATTTACAACTTCAATTAATATTCAATAAGAAAACACTCA
4588936 AATTTCTTAT
Statistics
Matches: 540, Mismatches: 26, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
573 20 0.04
574 520 0.96
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (574 bp):
ACAACCAATAATCATCAAACATGCATCATTCTTATAAAATATATAAGGTCAACCATTAAATTTAC
TTTAACATACAAGTCATCTTTGGATGTAACTTATATATTAATTAAACAAAGTTCATAACCTACTT
CAATTATTATTAACCATGAATAAGACCTACCTTTGGGTAATCGAATTACTACATTTTAATAACTA
TAAATGTTTATTATTTTTAAATGTAATTTATGATGCTACATCAAATAAACATTTATAAACATAAT
ATAAATCATTTAATGAATTTCGAGTGGGTCGCTTTGGTGACTAACACACTCACTAAAATATTAAA
GATTTAAATCATGATCCAAAATTGGTTAATGTGATCCTACACTTGCCACGACAACTTCACTTGTC
ACGGTAACATCATTAACTTTACTTTGCCTTGGCAACTTCACTTGTCAAGGCAACGTCATTAACCA
TCAAACCGGGATCATATCATTGTTCCTTATCAATTAACAATCAATATATCATCAATATTATAATA
AATTGTCAATTTACAACTTCAATTAATATTCAATAAGAAAACACTCATTAAATT
Found at i:4588972 original size:36 final size:36
Alignment explanation
Indices: 4588920--4589061 Score: 214
Period size: 36 Copynumber: 3.9 Consensus size: 36
4588910 ATTAATATTC
4588920 AATAAG-AAAATACTCAAATTTCTTATGAAACATTT
1 AATAAGAAAAATACTCAAATTTCTTATGAAACATTT
* *
4588955 AATAAGAAAAATGCTCAAATTTCTTATGAAACCTTT
1 AATAAGAAAAATACTCAAATTTCTTATGAAACATTT
* *
4588991 AATTAAAAAAAATACCCAAATTTCTTATGAAACATTT
1 AA-TAAGAAAAATACTCAAATTTCTTATGAAACATTT
4589028 AATAAGAAAAAAATACTCAAATTTCTTATGAAAC
1 AATAAG--AAAAATACTCAAATTTCTTATGAAAC
4589062 CTAAATTGGT
Statistics
Matches: 95, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
35 6 0.06
36 32 0.34
37 32 0.34
38 25 0.26
ACGTcount: A:0.50, C:0.13, G:0.06, T:0.32
Consensus pattern (36 bp):
AATAAGAAAAATACTCAAATTTCTTATGAAACATTT
Found at i:4589011 original size:37 final size:37
Alignment explanation
Indices: 4588926--4589061 Score: 211
Period size: 37 Copynumber: 3.7 Consensus size: 37
4588916 ATTCAATAAG
*
4588926 AAAATACTCAAATTTCTTATGAAACATTTAA-TAAGA
1 AAAATACTCAAATTTCTTATGAAACATTTAATTAAAA
* *
4588962 AAAATGCTCAAATTTCTTATGAAACCTTTAATTAAAA
1 AAAATACTCAAATTTCTTATGAAACATTTAATTAAAA
* *
4588999 AAAATACCCAAATTTCTTATGAAACATTTAATAAGAAA
1 AAAATACTCAAATTTCTTATGAAACATTTAATTA-AAA
4589037 AAAATACTCAAATTTCTTATGAAAC
1 AAAATACTCAAATTTCTTATGAAAC
4589062 CTAAATTGGT
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
36 29 0.32
37 34 0.38
38 27 0.30
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.32
Consensus pattern (37 bp):
AAAATACTCAAATTTCTTATGAAACATTTAATTAAAA
Found at i:4590613 original size:182 final size:182
Alignment explanation
Indices: 4590370--4592036 Score: 2375
Period size: 181 Copynumber: 9.3 Consensus size: 182
4590360 ATACAAATGA
* * * * *
4590370 AAAATGTATC-ACTCCATAGCAATATTACAGGTAAAAATATGACAAAACCGATCTTAAAATGACA
1 AAAATGTATCGA-TCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACA
* *
4590434 AAACCGGTAAAACGCTACCGAATATGTTGATAGTGTCGATAATTTAATATAAGTATCGACACTTT
65 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
* *
4590499 CTGAATTTAAAAGAGAATAAGTTATAGCGCCTAAAAAGTGTTGACACTTTATG
130 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* *
4590552 AAAATGTATCGATCTATAACAATATAACAGCTAAAAATATGAAAAAACCGGTCTCAAAATGACAA
1 AAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAA
* * *
4590617 AACAGGTAAATA-ACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
66 AACCGGTAAA-ACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
* * * *
4590681 -TCGAATTTAAAAGATAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA-A
130 CT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * * * *
4590733 AAAATGTATCGATCCATAACAATATTACAGGTAGAAATATGACAAAATCGGTCTTAAAATGACAA
1 AAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAA
4590798 AACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGA-AATTTAATATAAGTATCGACACTTTC
66 AACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
4590862 TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
131 TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
*
4590914 AAAATGTATCGATCTATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAA
1 AAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAA
* * * *
4590979 AACAGGTAAATA-ACTACCGGATATGTTGAAACTGTCG---A--T-A-CT---T-T--ACACTTT
66 AACCGGTAAA-ACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
* * *
4591030 -TGGAATTTAAAAGAGAAGAAGTTATAGCGTCTATAAAA-TGTCGATACTTTA-A
130 CT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTA-AAAAGTGTCGACACTTTATG
* *
4591082 AAAATGTATCGATCCATAACAATATAAAAGGTAAAAATATGACAAAACCGGTCTCAAAATGACAA
1 AAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAA
* *
4591147 AACCGGTAAAACGCTACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGATACTTTC
66 AACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
* *
4591212 TGAATTTAAAAGAGAATAAGTTATAGCGCCTAAAAAGTGTCGACACTTAATG
131 TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * *
4591264 AAAATGTATTGATCCATAACAATATAATAGCTAAAAATATGACAAAATCGGTCTCAAAATGACAA
1 AAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAA
** * * ** * * *
4591329 AACAAGCAAATA-ACTATAGGATATGTTGACAGTGTCGATACTTTAATATAAGTATAGACACTTT
66 AACCGGTAAA-ACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
* * * * *
4591393 -TAGAAATAAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA-A
130 CT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* *
4591445 AAAATGTATCGATCAATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACAA
1 AAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAA
4591510 AACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
66 AACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
4591575 TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
131 TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* *
4591627 AAAATGTATCGATCTATAACAATATAACAGCTAAAAATATGATAAAACCGGTCTCAAAATGACAA
1 AAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAA
* * *
4591692 AACAGGTAAATA-ACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
66 AACCGGTAAA-ACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
* * *
4591756 -TGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA-A
130 CT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * *
4591808 AAAATGTATCGATCTATAACAATATAACATG-TAAAAATATGACAAAACCGATCTCAAAATGAAA
1 AAAATGTATCGATCCATAACAATATAACA-GCTAAAAATATGACAAAACCGGTCTCAAAATGACA
* *
4591872 AAACCGGTAAAACGCTACCGAATATGTTGAAAGTGTCAATAATTTAATATAAGTATCGACACTTT
65 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
*
4591937 CTGAATTTTAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
130 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * *
4591990 AAAATATATCGATCGATAACAATATAACAGCTAAAAATATGAGAAAA
1 AAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGACAAAA
4592037 TAGGTCAACA
Statistics
Matches: 1323, Mismatches: 124, Indels: 76
0.87 0.08 0.05
Matches are distributed among these distances:
167 1 0.00
168 94 0.07
169 49 0.04
170 4 0.00
171 2 0.00
172 1 0.00
173 1 0.00
174 1 0.00
175 2 0.00
176 1 0.00
177 1 0.00
178 1 0.00
179 2 0.00
180 77 0.06
181 555 0.42
182 527 0.40
183 4 0.00
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.27
Consensus pattern (182 bp):
AAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAA
AACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
Found at i:4591554 original size:363 final size:363
Alignment explanation
Indices: 4590369--4592036 Score: 2790
Period size: 363 Copynumber: 4.6 Consensus size: 363
4590359 GATACAAATG
* * * *
4590369 AAAAATGTATC-ACTCCATAGCAATATTACAGGTAAAAATATGACAAAACCGATCTTAAAATGAC
1 AAAAATGTATCGA-TCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGAC
* *
4590433 AAAACCGGTAAAACGCTACCGAATATGTTGATAGTGTCGATAATTTAATATAAGTATCGACACTT
65 AAAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTT
* *
4590498 TCTGAATTTAAAAGAGAATAAGTTATAGCGCCTAAAAAGTGTTGACACTTTATGAAAATGTATCG
130 TCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCG
*
4590563 ATCTATAACAATATAACAGCTAAAAATATGAAAAAACCGGTCTCAAAATGACAAAACAGGTAAAT
195 ATCTATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAAT
*
4590628 AACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTCGAATTTAAAA
260 AACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAA
*
4590693 GATAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA
325 GAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA
* * * *
4590732 AAAAATGTATCGATCCATAACAATATTACAGGTAGAAATATGACAAAATCGGTCTTAAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACA
4590797 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGA-AATTTAATATAAGTATCGACACTTT
66 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
4590861 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
131 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
4590926 TCTATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATA
196 TCTATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATA
*
4590991 ACTACCGGATATGTTGAAACTGTCGATAC-------T---T-T--ACACTTTTGGAATTTAAAAG
261 ACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAAG
* *
4591043 AGAAGAAGTTATAGCGTCTATAAAATGTCGATACTTTA
326 AGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA
*
4591081 AAAAATGTATCGATCCATAACAATATAAAAGGTAAAAATATGACAAAACCGGTCTCAAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACA
* *
4591146 AAACCGGTAAAACGCTACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGATACTTT
66 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
* * *
4591211 CTGAATTTAAAAGAGAATAAGTTATAGCGCCTAAAAAGTGTCGACACTTAATGAAAATGTATTGA
131 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
* * * * *
4591276 TCCATAACAATATAATAGCTAAAAATATGACAAAATCGGTCTCAAAATGACAAAACAAGCAAATA
196 TCTATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATA
** * * * * *
4591341 ACTATAGGATATGTTGACAGTGTCGATACTTTAATATAAGTATAGACACTTTTAGAAATAAAAAG
261 ACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAAG
4591406 AGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA
326 AGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA
*
4591444 AAAAATGTATCGATCAATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACA
4591509 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
66 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
4591574 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
131 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
*
4591639 TCTATAACAATATAACAGCTAAAAATATGATAAAACCGGTCTCAAAATGACAAAACAGGTAAATA
196 TCTATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATA
4591704 ACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAAG
261 ACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAAG
4591769 AGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA
326 AGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA
* * * *
4591807 AAAAATGTATCGATCTATAACAATATAACATGTAAAAATATGACAAAACCGATCTCAAAATGAAA
1 AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACA
* *
4591872 AAACCGGTAAAACGCTACCGAATATGTTGAAAGTGTCAATAATTTAATATAAGTATCGACACTTT
66 AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
* *
4591937 CTGAATTTTAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATATATCGA
131 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
* *
4592002 TCGATAACAATATAACAGCTAAAAATATGAGAAAA
196 TCTATAACAATATAACAGCTAAAAATATGACAAAA
4592037 TAGGTCAACA
Statistics
Matches: 1222, Mismatches: 68, Indels: 30
0.93 0.05 0.02
Matches are distributed among these distances:
349 152 0.12
350 171 0.14
351 1 0.00
352 1 0.00
355 1 0.00
357 1 0.00
360 1 0.00
361 1 0.00
362 180 0.15
363 712 0.58
364 1 0.00
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.27
Consensus pattern (363 bp):
AAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACA
AAACCGGTAAAACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGA
TCTATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATA
ACTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTTTGGAATTTAAAAG
AGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTA
Found at i:4592463 original size:23 final size:23
Alignment explanation
Indices: 4592406--4592463 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
4592396 TTTTATGAGA
4592406 AAATATGTTAATATAAGCGCTACC
1 AAATATGTT-ATATAAGCGCTACC
* * ** *
4592430 TATTACATTATATAAGTGCTACC
1 AAATATGTTATATAAGCGCTACC
4592453 AAATATGTTAT
1 AAATATGTTAT
4592464 TGTATTTGAT
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (23 bp):
AAATATGTTATATAAGCGCTACC
Found at i:4592508 original size:87 final size:87
Alignment explanation
Indices: 4592416--4592578 Score: 245
Period size: 87 Copynumber: 1.9 Consensus size: 87
4592406 AAATATGTTA
* * *
4592416 ATATAAGCGCTACCTATTACATTATATAAGTGCTACCAAATATGTTATTGTATTTGATAATATTT
1 ATATAAGCGCTACATATTACATTATATAAGTGCTACCAAATATGTTATTGTACTTGATAATATTA
*
4592481 CCGGTTAAATGCCTATTTTATT
66 ACGGTTAAATGCCTATTTTATT
* * * * *
4592503 ATATAAGTGTTACATATTACATTATATAAGTGTTACCTAATATGTTATTGTGCTTGATAATATTA
1 ATATAAGCGCTACATATTACATTATATAAGTGCTACCAAATATGTTATTGTACTTGATAATATTA
4592568 ACGGTTAAATG
66 ACGGTTAAATG
4592579 ATATAACATA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 67 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (87 bp):
ATATAAGCGCTACATATTACATTATATAAGTGCTACCAAATATGTTATTGTACTTGATAATATTA
ACGGTTAAATGCCTATTTTATT
Found at i:4592550 original size:23 final size:23
Alignment explanation
Indices: 4592500--4592544 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
4592490 TGCCTATTTT
*
4592500 ATTATATAAGTGTTACATATTAC
1 ATTATATAAGTGTTACATAATAC
*
4592523 ATTATATAAGTGTTACCTAATA
1 ATTATATAAGTGTTACATAATA
4592545 TGTTATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (23 bp):
ATTATATAAGTGTTACATAATAC
Found at i:4600837 original size:24 final size:25
Alignment explanation
Indices: 4600810--4600858 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
4600800 CAAAACACAA
4600810 TAATTT-GAAAA-TTAACATTTTTTT
1 TAATTTCGAAAATTTAA-ATTTTTTT
4600834 TAATTTCGAAAATTTAAATTTTTTT
1 TAATTTCGAAAATTTAAATTTTTTT
4600859 GGAAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.26
25 13 0.57
26 4 0.17
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (25 bp):
TAATTTCGAAAATTTAAATTTTTTT
Found at i:4601252 original size:22 final size:21
Alignment explanation
Indices: 4601226--4601283 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
4601216 CAGAACCCCA
* *
4601226 GGGGGTATCGATTCCCCT-GT
1 GGGGGGATCGATTCCCCTCAT
*
4601246 GGGGGGGAATCGGTT-CCCTCAT
1 -GGGGGG-ATCGATTCCCCTCAT
4601268 GGGGGGATCGATTCCC
1 GGGGGGATCGATTCCC
4601284 TCTGCACCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 6 0.20
21 17 0.57
22 7 0.23
ACGTcount: A:0.12, C:0.24, G:0.40, T:0.24
Consensus pattern (21 bp):
GGGGGGATCGATTCCCCTCAT
Found at i:4601277 original size:20 final size:21
Alignment explanation
Indices: 4601247--4601285 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
4601237 TTCCCCTGTG
*
4601247 GGGGGGAATCGGTTCCCTCAT
1 GGGGGGAATCGATTCCCTCAT
4601268 GGGGGG-ATCGATTCCCTC
1 GGGGGGAATCGATTCCCTC
4601286 TGCACCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.13, C:0.26, G:0.38, T:0.23
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCTCAT
Found at i:4610958 original size:71 final size:71
Alignment explanation
Indices: 4610881--4611023 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
4610871 AACGGTCACA
*
4610881 TCTTTGAGTAAGTTTTCGTTTTCCTTGCTAAAATTTTAAAAATAAAAAATTGATCACTAACGTTT
1 TCTTTGAGTAAGTTTTCGTTTTCCTCGCTAAAATTTTAAAAATAAAAAATTGATCACTAACGTTT
4610946 TCGATT
66 TCGATT
4610952 TCTTTGAGTAAGTTTTCGTTTTCCTCGCTAAAATTTTAAAAATAAAAAATTGATCACTAACGTTT
1 TCTTTGAGTAAGTTTTCGTTTTCCTCGCTAAAATTTTAAAAATAAAAAATTGATCACTAACGTTT
4611017 TCGATT
66 TCGATT
4611023 T
1 T
4611024 ATAATAAATT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.43
Consensus pattern (71 bp):
TCTTTGAGTAAGTTTTCGTTTTCCTCGCTAAAATTTTAAAAATAAAAAATTGATCACTAACGTTT
TCGATT
Found at i:4611570 original size:14 final size:14
Alignment explanation
Indices: 4611551--4611579 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4611541 AAGGGACATG
4611551 GAAAGAGTAAAGAT
1 GAAAGAGTAAAGAT
4611565 GAAAGAGTAAAGAT
1 GAAAGAGTAAAGAT
4611579 G
1 G
4611580 GGTTTTGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.31, T:0.14
Consensus pattern (14 bp):
GAAAGAGTAAAGAT
Found at i:4613070 original size:31 final size:31
Alignment explanation
Indices: 4613032--4613094 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
4613022 GATTAGATTA
4613032 GGTTGAAATTCGGTTTAGGATGAAAAAACTC
1 GGTTGAAATTCGGTTTAGGATGAAAAAACTC
4613063 GGTTGAAATTCGGTTTAGGATGAAAAAACTC
1 GGTTGAAATTCGGTTTAGGATGAAAAAACTC
4613094 G
1 G
4613095 AAATGTCCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.29
Consensus pattern (31 bp):
GGTTGAAATTCGGTTTAGGATGAAAAAACTC
Found at i:4614036 original size:2 final size:2
Alignment explanation
Indices: 4614029--4614061 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4614019 TATTATTTTA
4614029 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4614062 ATTCTAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4614309 original size:39 final size:39
Alignment explanation
Indices: 4614220--4614322 Score: 124
Period size: 39 Copynumber: 2.6 Consensus size: 39
4614210 GAATGTTAAT
4614220 GTGAAATAATTTAAGAAATTAAAATTTTAAAATATTATG
1 GTGAAATAATTTAAGAAATTAAAATTTTAAAATATTATG
* *
4614259 GTAGCAA-AATTTAAGAAATTAAGAA-TTTACAATATTA-G
1 GT-GAAATAATTTAAGAAATTAA-AATTTTAAAATATTATG
4614297 AGTGAAATAATTTAA-AAATTATAAAT
1 -GTGAAATAATTTAAGAAATTA-AAAT
4614323 AAACATTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
38 12 0.22
39 38 0.69
40 5 0.09
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.35
Consensus pattern (39 bp):
GTGAAATAATTTAAGAAATTAAAATTTTAAAATATTATG
Found at i:4617418 original size:3 final size:3
Alignment explanation
Indices: 4617410--4617459 Score: 79
Period size: 3 Copynumber: 17.7 Consensus size: 3
4617400 AGTTCTTAGG
4617410 TTA TTA TTA TTA TTA -TA TTA TT- TTA TTA TTA -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4617455 TTA TT
1 TTA TT
4617460 TTGTCATGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 6 0.14
3 38 0.86
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4626284 original size:42 final size:42
Alignment explanation
Indices: 4626221--4626303 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
4626211 GTTATTCGGG
* *
4626221 CCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTAGGA
1 CCATCAATAAGTCTTTAGAGCATGATGATTAAATCCTTAGGA
* *
4626263 CCATCAGTAAGTCTTTAGAGCATGATGATTAAATTCTTAGG
1 CCATCAATAAGTCTTTAGAGCATGATGATTAAATCCTTAGG
4626304 GTAATTTGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (42 bp):
CCATCAATAAGTCTTTAGAGCATGATGATTAAATCCTTAGGA
Found at i:4626361 original size:13 final size:13
Alignment explanation
Indices: 4626343--4626367 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4626333 TGAAGCAAAC
4626343 CCATCAGTAAGTG
1 CCATCAGTAAGTG
4626356 CCATCAGTAAGT
1 CCATCAGTAAGT
4626368 CTTTCGAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (13 bp):
CCATCAGTAAGTG
Found at i:4627012 original size:53 final size:53
Alignment explanation
Indices: 4626906--4627265 Score: 433
Period size: 53 Copynumber: 6.8 Consensus size: 53
4626896 ACACCAAAAA
* * *
4626906 ATTGTTCGAGTTTTACTCCCTGAAGCAAGAGAGAG-G-A-CTGTAGGCAGAAG
1 ATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAG
** * * *
4626956 ATTGCCCGATTTCTACTCCCTGAAGCAAAAGGGAACGAACCCGTAGGCAGAAG
1 ATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAG
4627009 ATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAG
1 ATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAG
* *
4627062 ATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGTGAACTCGTAGGCAGAAG
1 ATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAG
* * *
4627115 ATTGTTCGAGTTATACCCCCTGAAGCAAGAGGGAGCGAACCCATAAGG-AGAAG
1 ATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGT-AGGCAGAAG
* * * * ****
4627168 ATTATTCGAGTTCTACTCCCTGAAGCAATAGGGATCGAACCCATTTTTAGAAG
1 ATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAG
* * * *
4627221 ATTGTTCGAGTTCCATAATCTCTGAA-CAAGAGAGAGCGGACCCGT
1 ATTGTTCGAGTT-C-TACTCCCTGAAGCAAGAGGGAGCGAACCCGT
4627266 CGTTCGAAGA
Statistics
Matches: 267, Mismatches: 36, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
50 28 0.10
51 1 0.00
52 1 0.00
53 210 0.79
54 18 0.07
55 9 0.03
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (53 bp):
ATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAG
Found at i:4628554 original size:3 final size:3
Alignment explanation
Indices: 4628546--4628598 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
4628536 AGTCCTTAGG
4628546 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4628594 TTA TT
1 TTA TT
4628599 TTGTCATGAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4630534 original size:2 final size:2
Alignment explanation
Indices: 4630527--4630561 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4630517 ATATTTTAAT
4630527 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4630562 GTCCCATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4630640 original size:2 final size:2
Alignment explanation
Indices: 4630633--4630659 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4630623 ATTTGATTAT
4630633 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
4630660 GTCGCTATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4630643 original size:23 final size:22
Alignment explanation
Indices: 4630600--4630643 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
4630590 TATGCTCCCT
* *
4630600 TATTTATTTTTATTTAAATATG
1 TATTTATTATTATATAAATATG
*
4630622 TATTTGATTATTATATATATAT
1 TATTT-ATTATTATATAAATAT
4630644 ATATATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (22 bp):
TATTTATTATTATATAAATATG
Found at i:4631936 original size:21 final size:21
Alignment explanation
Indices: 4631897--4631936 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
4631887 TCGTCATTTA
* * *
4631897 TATTTTTATTTACTTTTTTTT
1 TATTTTTACTAACTCTTTTTT
4631918 TATTTTTACTAACTCTTTT
1 TATTTTTACTAACTCTTTT
4631937 ACCTTTGTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.72
Consensus pattern (21 bp):
TATTTTTACTAACTCTTTTTT
Found at i:4639453 original size:59 final size:60
Alignment explanation
Indices: 4639357--4639469 Score: 149
Period size: 59 Copynumber: 1.9 Consensus size: 60
4639347 AATACTTCTC
* * *
4639357 TTAGGATGAAAACCCGAGAGAGCGTCCTAAGTCGAAAAAAA-AG-GAAAAGAGAAAAATGT
1 TTAGGATGAAAACCCGAAAGAGCGCCCTAAATCGAAAAAAATAGAGAAAA-AGAAAAATGT
* * *
4639416 TTAGGGTGAAAACCCGAAAGGGCGCCCTAAATTGAAAAAAATAGAGAAAAAGAA
1 TTAGGATGAAAACCCGAAAGAGCGCCCTAAATCGAAAAAAATAGAGAAAAAGAA
4639470 CAAAAGAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 35 0.76
60 6 0.13
61 5 0.11
ACGTcount: A:0.50, C:0.12, G:0.25, T:0.13
Consensus pattern (60 bp):
TTAGGATGAAAACCCGAAAGAGCGCCCTAAATCGAAAAAAATAGAGAAAAAGAAAAATGT
Found at i:4641404 original size:2 final size:2
Alignment explanation
Indices: 4641387--4641441 Score: 59
Period size: 2 Copynumber: 30.5 Consensus size: 2
4641377 AATTACAAAT
*
4641387 TA TA -A TA TA TA CA TA TA TA TA -A TA T- TA TA TA -A T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4641424 -A TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
4641442 GAGTTTAATT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
1 6 0.13
2 39 0.87
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4641450 original size:25 final size:25
Alignment explanation
Indices: 4641387--4641441 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 25
4641377 AATTACAAAT
4641387 TATAATATATACATATATATAATATTA
1 TATAAT-TATA-ATATATATAATATTA
4641414 TATAATTATAATATATAT-ATATATA
1 TATAATTATAATATATATAATAT-TA
4641439 TAT
1 TAT
4641442 GAGTTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 4 0.15
25 13 0.48
26 4 0.15
27 6 0.22
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
TATAATTATAATATATATAATATTA
Found at i:4642525 original size:17 final size:18
Alignment explanation
Indices: 4642491--4642523 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
4642481 TTTTGTTTGT
4642491 AATTTATTTAAGTATTTA
1 AATTTATTTAAGTATTTA
4642509 AATTT-TTTAA-TATTT
1 AATTTATTTAAGTATTT
4642524 TATTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
AATTTATTTAAGTATTTA
Found at i:4651511 original size:32 final size:31
Alignment explanation
Indices: 4651475--4651535 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
4651465 TTTGGGTCAG
4651475 GTTAATACCAGATCAGTTAGATTTTAGGTTGA
1 GTTAATACCAGATCAGTT-GATTTTAGGTTGA
* * * *
4651507 GTTAATATCGGATCGGTTGATTTTCGGTT
1 GTTAATACCAGATCAGTTGATTTTAGGTT
4651536 TAAATCAACC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 10 0.40
32 15 0.60
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.41
Consensus pattern (31 bp):
GTTAATACCAGATCAGTTGATTTTAGGTTGA
Found at i:4651855 original size:12 final size:12
Alignment explanation
Indices: 4651838--4651862 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4651828 GATAAAGAAA
4651838 TAAAATTTTTAT
1 TAAAATTTTTAT
4651850 TAAAATTTTTAT
1 TAAAATTTTTAT
4651862 T
1 T
4651863 TCCAAATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TAAAATTTTTAT
Found at i:4652138 original size:18 final size:19
Alignment explanation
Indices: 4652101--4652138 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
4652091 CTCTTAATTT
* *
4652101 TCTATTATTTTATTATAAA
1 TCTAATATTTTATAATAAA
4652120 TCTAATATTTT-TAATAAA
1 TCTAATATTTTATAATAAA
4652138 T
1 T
4652139 TATCAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (19 bp):
TCTAATATTTTATAATAAA
Found at i:4652311 original size:32 final size:32
Alignment explanation
Indices: 4652270--4652352 Score: 130
Period size: 32 Copynumber: 2.6 Consensus size: 32
4652260 GATTGATTTT
4652270 CTTTAGGTTCGGGTTAATTTCAGTTCAGGTTG
1 CTTTAGGTTCGGGTTAATTTCAGTTCAGGTTG
* *
4652302 CTTTCGGTTCGGGTTAATTTCAGTTCGGGTTG
1 CTTTAGGTTCGGGTTAATTTCAGTTCAGGTTG
* *
4652334 CTTTTGGTTCAGGTTAATT
1 CTTTAGGTTCGGGTTAATT
4652353 ATGGTTTCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.13, C:0.13, G:0.28, T:0.46
Consensus pattern (32 bp):
CTTTAGGTTCGGGTTAATTTCAGTTCAGGTTG
Found at i:4652343 original size:16 final size:16
Alignment explanation
Indices: 4652213--4652348 Score: 85
Period size: 16 Copynumber: 8.5 Consensus size: 16
4652203 TTTCAATCTA
4652213 TTCGGGTTGCTTTCGG
1 TTCGGGTTGCTTTCGG
* ***
4652229 GTCGGGTTAAATTCGG
1 TTCGGGTTGCTTTCGG
* *
4652245 TTTGGGTTGCTTTTGG
1 TTCGGGTTGCTTTCGG
** * *
4652261 ATT-GATTTTCTTTAGG
1 -TTCGGGTTGCTTTCGG
** *
4652277 TTCGGGTTAATTTCAG
1 TTCGGGTTGCTTTCGG
*
4652293 TTCAGGTTGCTTTCGG
1 TTCGGGTTGCTTTCGG
** *
4652309 TTCGGGTTAATTTCAG
1 TTCGGGTTGCTTTCGG
*
4652325 TTCGGGTTGCTTTTGG
1 TTCGGGTTGCTTTCGG
*
4652341 TTCAGGTT
1 TTCGGGTT
4652349 AATTATGGTT
Statistics
Matches: 85, Mismatches: 33, Indels: 4
0.70 0.27 0.03
Matches are distributed among these distances:
15 2 0.02
16 81 0.95
17 2 0.02
ACGTcount: A:0.10, C:0.12, G:0.31, T:0.46
Consensus pattern (16 bp):
TTCGGGTTGCTTTCGG
Found at i:4653945 original size:16 final size:17
Alignment explanation
Indices: 4653910--4653946 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
4653900 ATAGGATGGA
4653910 AAAAATAGTATTATTGT
1 AAAAATAGTATTATTGT
4653927 AAAAAT-GTAATTATT-T
1 AAAAATAGT-ATTATTGT
4653943 AAAA
1 AAAA
4653947 TAATATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (17 bp):
AAAAATAGTATTATTGT
Found at i:4654775 original size:21 final size:21
Alignment explanation
Indices: 4654750--4654796 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
4654740 GAATATACTT
*
4654750 AATTAAAAAAAATTAAAGGTA
1 AATTAAAAAAAATAAAAGGTA
***
4654771 AATTATTTAAAATAAAAGGTA
1 AATTAAAAAAAATAAAAGGTA
4654792 AATTA
1 AATTA
4654797 TATTAGTGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.30
Consensus pattern (21 bp):
AATTAAAAAAAATAAAAGGTA
Found at i:4654797 original size:21 final size:21
Alignment explanation
Indices: 4654758--4654797 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
4654748 TTAATTAAAA
*
4654758 AAAATTAAAGGTAAATTATTT
1 AAAATAAAAGGTAAATTATTT
4654779 AAAATAAAAGGTAAATTAT
1 AAAATAAAAGGTAAATTAT
4654798 ATTAGTGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (21 bp):
AAAATAAAAGGTAAATTATTT
Found at i:4656079 original size:21 final size:23
Alignment explanation
Indices: 4656053--4656105 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
4656043 GGTCATTGGT
*
4656053 ATAATTTATCTTT-TATTTT-AA
1 ATAATTTATCTTTAAATTTTCAA
*
4656074 ATAATTTACCTTTAAATTTTCAA
1 ATAATTTATCTTTAAATTTTCAA
*
4656097 CTAATTTAT
1 ATAATTTAT
4656106 AATTATATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 12 0.46
22 5 0.19
23 9 0.35
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (23 bp):
ATAATTTATCTTTAAATTTTCAA
Found at i:4659143 original size:60 final size:59
Alignment explanation
Indices: 4659033--4659149 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 59
4659023 CATTTGACAC
* * * *
4659033 GATGCCTTCAAGTTCCCAGGGGAAGCATTCAACTGCGAGCTTCTTCGACCTCAATGTCAA
1 GATGCCTTCAAGTTCCAAGGGGAAGCATTCAACTACGAACTTATTCGACCT-AATGTCAA
*
4659093 GATGCCTTCAAGTT-CAAGGGGAAGGCATTCAACTAAC-AACTTATTTGACCTAATGTC
1 GATGCCTTCAAGTTCCAAGGGGAA-GCATTCAACT-ACGAACTTATTCGACCTAATGTC
4659150 GGCATCATGA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
59 14 0.28
60 35 0.70
61 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (59 bp):
GATGCCTTCAAGTTCCAAGGGGAAGCATTCAACTACGAACTTATTCGACCTAATGTCAA
Found at i:4663057 original size:83 final size:83
Alignment explanation
Indices: 4662916--4663082 Score: 241
Period size: 83 Copynumber: 2.0 Consensus size: 83
4662906 TGAGTATATA
* *
4662916 TCATTATTACTCAATAAATTATTTATATGAATTCAGTATTGAAATTACCTCAAAATAGCAGG-AA
1 TCATTATTACTCAACAAATTATTTATATAAATTCA--ATTGAAATTACCTCAAAATAGC-GGAAA
4662980 GACCAACAAGTTTTTCACGAT
63 GACCAACAAGTTTTTCACGAT
*
4663001 TCATTA-TACTCAACAAATTATTTTTATATAAATTC-ATTGAAATTACCTCAAAATAGCGGAAAT
1 TCATTATTACTCAACAAATTA--TTTATATAAATTCAATTGAAATTACCTCAAAATAGCGGAAAG
4663064 ACCAACAAGTTTTTCACGA
64 ACCAACAAGTTTTTCACGA
4663083 CCGGACGTAA
Statistics
Matches: 76, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
82 2 0.03
83 43 0.57
84 13 0.17
85 6 0.08
86 12 0.16
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (83 bp):
TCATTATTACTCAACAAATTATTTATATAAATTCAATTGAAATTACCTCAAAATAGCGGAAAGAC
CAACAAGTTTTTCACGAT
Found at i:4663933 original size:24 final size:26
Alignment explanation
Indices: 4663901--4663958 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 26
4663891 CTGCAGAAAG
*
4663901 TAATAAAATTAGTACAA-T-AAAATT-
1 TAATAAAATTAATA-AATTAAAAATTA
4663925 TAATAAAA-TAATAAATTAAAAATTA
1 TAATAAAATTAATAAATTAAAAATTA
4663950 TAATAAAAT
1 TAATAAAAT
4663959 ATAAAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 2 0.07
23 5 0.17
24 14 0.48
25 8 0.28
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (26 bp):
TAATAAAATTAATAAATTAAAAATTA
Found at i:4663965 original size:18 final size:17
Alignment explanation
Indices: 4663932--4663965 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4663922 ATTTAATAAA
*
4663932 ATAATAAATTAAAAATT
1 ATAATAAAATAAAAATT
4663949 ATAATAAAATATAAAAT
1 ATAATAAAATA-AAAAT
4663966 ATTTACCTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAATAAAATAAAAATT
Found at i:4665264 original size:19 final size:19
Alignment explanation
Indices: 4665227--4665270 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
4665217 TTGTTTCTAG
* *
4665227 TTTTTTGATTGGTTGCTTT
1 TTTTTTGACTGGATGCTTT
4665246 TGTTTTTGACTGGAT-CTTT
1 T-TTTTTGACTGGATGCTTT
4665265 TTTTTT
1 TTTTTT
4665271 CTTGTGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 5 0.23
19 6 0.27
20 11 0.50
ACGTcount: A:0.07, C:0.07, G:0.18, T:0.68
Consensus pattern (19 bp):
TTTTTTGACTGGATGCTTT
Found at i:4665753 original size:2 final size:2
Alignment explanation
Indices: 4665746--4665783 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4665736 ACATACATAC
4665746 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4665784 GTACACCCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4669840 original size:4 final size:4
Alignment explanation
Indices: 4669831--4672019 Score: 3693
Period size: 4 Copynumber: 568.0 Consensus size: 4
4669821 TTATCCATAA
*
4669831 ACAT ACAT ACAT ACAT ACAT ACAT AAACT ACAT ACAT ACAT -CAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACA-T ACAT ACAT ACAT ACAT ACAT
4669879 ACAT AC-T ACAT ACAT ACAT -CAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4669925 AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T -CAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4669970 ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670016 ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670061 ACAT AC-T AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670107 ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT -CAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670153 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
4670201 ACAT ACAT ACA- ACAT ACAT ACAT ACA- ACAT ACCT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670247 AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670294 ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
4670341 ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670387 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670435 ACA- ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
4670481 ACA- ACAT ACAG ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670527 ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670574 ACAT ACAT ACAT AC-T ACA- ACAT ACAT ACAT ACAT ACAT ACAT AC-T
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670619 ACAT ACAT ACAT ACAT --AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670665 ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT -CAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670710 ACAT ACA- ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670756 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670802 ACAT ACAT ACAT -CAT ACAT AC-- ACAT ACAT ACAT ACA- ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670846 ACAT AC-T -CAT ACAT ACAT ACAT ACA- AC-T ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4670890 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT -CAT AC-- ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
4670934 ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAAC ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACAT ACAT
4670981 ACAT ACAT --AT ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671026 ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671072 ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
4671118 ACAT ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671166 ACAT -CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671213 ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT --AT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671258 ACAT AC-- ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671303 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671351 ACAT ACAT ACAT AC-- ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671396 ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
4671442 ACAT ACAT -CAT ACAT ACAT ACAT ACAG ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671489 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671537 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT AC--
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671582 ACAT ACAT ACAT ACAT ACA- ACAT AC-T ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
4671628 ACAT ACCT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671674 ACAT ACAT ACAT ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671721 AC-- ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671766 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA- ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671813 -CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671860 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671908 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4671956 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4672004 ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT
4672020 GATCCAATTT
Statistics
Matches: 2083, Mismatches: 16, Indels: 172
0.92 0.01 0.08
Matches are distributed among these distances:
2 32 0.02
3 155 0.07
4 1890 0.91
5 6 0.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:4672427 original size:21 final size:21
Alignment explanation
Indices: 4672401--4672455 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
4672391 TAGAGGGTAG
*
4672401 GGTTTTAGGGTTTGAAGCATA
1 GGTTTTAGGGTTTGAAGAATA
4672422 GGTTTTAGGGTTTGAAGAATA
1 GGTTTTAGGGTTTGAAGAATA
4672443 GGTTTTAGGGTTT
1 GGTTTTAGGGTTT
4672456 TAGATTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.02, G:0.35, T:0.42
Consensus pattern (21 bp):
GGTTTTAGGGTTTGAAGAATA
Found at i:4681664 original size:22 final size:22
Alignment explanation
Indices: 4681639--4681719 Score: 90
Period size: 22 Copynumber: 3.7 Consensus size: 22
4681629 CAATACACGG
*
4681639 AAGTGCCTTAGCACTGGTACTA
1 AAGTGCCTTAGCACTGATACTA
* * *
4681661 AAGTGCCTCAGCACTAATACGA
1 AAGTGCCTTAGCACTGATACTA
* * * *
4681683 AAATGCATTTGCACTGACACTA
1 AAGTGCCTTAGCACTGATACTA
4681705 AAGTGCCTTAGCACT
1 AAGTGCCTTAGCACT
4681720 ACTGACATAT
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (22 bp):
AAGTGCCTTAGCACTGATACTA
Found at i:4684630 original size:19 final size:20
Alignment explanation
Indices: 4684606--4684651 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
4684596 CAAAAAGACC
4684606 CAATTTC-ACATTCTAACAT
1 CAATTTCAACATTCTAACAT
4684625 CAATTTCAACATTCTAACAT
1 CAATTTCAACATTCTAACAT
*
4684645 TAATTTC
1 CAATTTC
4684652 CATCATAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 7 0.28
20 18 0.72
ACGTcount: A:0.37, C:0.24, G:0.00, T:0.39
Consensus pattern (20 bp):
CAATTTCAACATTCTAACAT
Found at i:4689541 original size:70 final size:69
Alignment explanation
Indices: 4689453--4689599 Score: 188
Period size: 70 Copynumber: 2.1 Consensus size: 69
4689443 CACCGAAGTA
* * *
4689453 CTAAACCATATATCACACATAAAGTTGTTCCCACCATGCA-CACTAAGTGTATCGAGTATACACT
1 CTAAACCAAATATCACACATAAAGTCGTGCCCACCA--CAGCACTAAGTGTATCGAGTATACACT
4689517 CTAGTG
64 CTAGTG
* * * * *
4689523 CTAAACCAAATATCACACATAAGGTCGTGCCCACCACATGCACTAAGTGTCTTGGGTATACATTC
1 CTAAACCAAATATCACACATAAAGTCGTGCCCACCACA-GCACTAAGTGTATCGAGTATACACTC
4689588 TAGTG
65 TAGTG
4689593 CTAAACC
1 CTAAACC
4689600 GGATATGCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
68 2 0.03
70 65 0.97
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (69 bp):
CTAAACCAAATATCACACATAAAGTCGTGCCCACCACAGCACTAAGTGTATCGAGTATACACTCT
AGTG
Found at i:4694081 original size:20 final size:20
Alignment explanation
Indices: 4694056--4694098 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
4694046 CATGATAGTT
4694056 GGTTATGGCACAAGAGACTA
1 GGTTATGGCACAAGAGACTA
4694076 GGTTATGGCACAAGAGACTA
1 GGTTATGGCACAAGAGACTA
4694096 GGT
1 GGT
4694099 CATGCTAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (20 bp):
GGTTATGGCACAAGAGACTA
Found at i:4695867 original size:196 final size:199
Alignment explanation
Indices: 4695630--4696024 Score: 769
Period size: 199 Copynumber: 2.0 Consensus size: 199
4695620 ATGGTTTAAA
4695630 ACAAGCTCCTAGAGCTTGGTATGAAAGATTGTCAAACTTTTTAATTAAAAAAGGTTTTTC-AAAG
1 ACAAGCTCCTAGAGCTTGGTATGAAAGATTGTCAAACTTTTTAATTAAAAAAGGTTTTTCAAAAG
4695694 GGAAGGTTGACACTACATTG-TTTTAAAGCAT-AAGGTAAAGATTTATTAGTAGTTCAAATTTAT
66 GGAAGGTTGACACTACATTGTTTTTAAAGCATAAAGGTAAAGATTTATTAGTAGTTCAAATTTAT
4695757 GTTGATGATATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGCA
131 GTTGATGATATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGCA
4695822 AAGC
196 AAGC
4695826 ACAAGCTCCTAGAGCTTGGTATGAAAGATTGTCAAACTTTTTAATTAAAAAAGGTTTTTCAAAAG
1 ACAAGCTCCTAGAGCTTGGTATGAAAGATTGTCAAACTTTTTAATTAAAAAAGGTTTTTCAAAAG
4695891 GGAAGGTTGACACTACATTGTTTTTAAAGCATAAAGGTAAAGATTTATTAGTAGTTCAAATTTAT
66 GGAAGGTTGACACTACATTGTTTTTAAAGCATAAAGGTAAAGATTTATTAGTAGTTCAAATTTAT
4695956 GTTGATGATATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGCA
131 GTTGATGATATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGCA
4696021 AAGC
196 AAGC
4696025 GAATTCGAGA
Statistics
Matches: 196, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
196 60 0.31
197 24 0.12
198 11 0.06
199 101 0.52
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (199 bp):
ACAAGCTCCTAGAGCTTGGTATGAAAGATTGTCAAACTTTTTAATTAAAAAAGGTTTTTCAAAAG
GGAAGGTTGACACTACATTGTTTTTAAAGCATAAAGGTAAAGATTTATTAGTAGTTCAAATTTAT
GTTGATGATATAATATTTGGTTCTACTAATGATGTTCTTTGCCAAGAATTTTCTAAGCTAATGCA
AAGC
Found at i:4697185 original size:23 final size:23
Alignment explanation
Indices: 4697159--4697211 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
4697149 GGAATCGATA
4697159 CCCCCCTTGAAGAGGAACCAATT
1 CCCCCCTTGAAGAGGAACCAATT
* * *
4697182 CCCCCTTTGAAGGGGAACCGATT
1 CCCCCCTTGAAGAGGAACCAATT
4697205 CCCCCCT
1 CCCCCCT
4697212 GTAGGGGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.23, C:0.40, G:0.19, T:0.19
Consensus pattern (23 bp):
CCCCCCTTGAAGAGGAACCAATT
Found at i:4697217 original size:22 final size:22
Alignment explanation
Indices: 4697148--4697225 Score: 75
Period size: 23 Copynumber: 3.5 Consensus size: 22
4697138 TTAGTGCAGA
* *
4697148 GGGAATCGATACCCCCCTTGAAG
1 GGGAACCGATTCCCCCC-TGAAG
* * *
4697171 AGGAACCAATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC-CTGAAG
*
4697194 GGGAACCGATTCCCCCCTGTAG
1 GGGAACCGATTCCCCCCTGAAG
*
4697216 GGGAATCGAT
1 GGGAACCGAT
4697226 ACCCTTATGG
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
22 13 0.30
23 31 0.70
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (22 bp):
GGGAACCGATTCCCCCCTGAAG
Found at i:4699439 original size:26 final size:26
Alignment explanation
Indices: 4699406--4699469 Score: 96
Period size: 24 Copynumber: 2.5 Consensus size: 26
4699396 TAACAAAAAG
*
4699406 GGGGAGAAATGTTAAAGTGTTTTAAA
1 GGGGAGAAGTGTTAAAGTGTTTTAAA
4699432 GGGGAGAAGTG-T-AAGTGTTTTAAA
1 GGGGAGAAGTGTTAAAGTGTTTTAAA
*
4699456 GGGGATAAGTGTTA
1 GGGGAGAAGTGTTA
4699470 GAGTAAGGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 22 0.65
25 2 0.06
26 10 0.29
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.30
Consensus pattern (26 bp):
GGGGAGAAGTGTTAAAGTGTTTTAAA
Found at i:4702126 original size:23 final size:24
Alignment explanation
Indices: 4702083--4702130 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
4702073 TGCATGACAT
4702083 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
*
4702107 TGTACATATATG-TTTATACATCA
1 TGTACATAGATGTTTTATACATCA
4702130 T
1 T
4702131 CAGGAAGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.44
Consensus pattern (24 bp):
TGTACATAGATGTTTTATACATCA
Found at i:4702646 original size:7 final size:7
Alignment explanation
Indices: 4702634--4702711 Score: 93
Period size: 7 Copynumber: 11.0 Consensus size: 7
4702624 TATATTGGGC
4702634 TATGGTT
1 TATGGTT
4702641 TATGGTT
1 TATGGTT
*
4702648 TATAGTT
1 TATGGTT
*
4702655 TATAGTT
1 TATGGTT
4702662 TATGGTT
1 TATGGTT
* *
4702669 TATAGTC
1 TATGGTT
4702676 TATGGTT
1 TATGGTT
4702683 TATGGTT
1 TATGGTT
* *
4702690 TATAGTC
1 TATGGTT
4702697 TATGGTT
1 TATGGTT
4702704 TAATGGTT
1 T-ATGGTT
4702712 AATGAATGAT
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
7 54 0.90
8 6 0.10
ACGTcount: A:0.21, C:0.03, G:0.23, T:0.54
Consensus pattern (7 bp):
TATGGTT
Found at i:4702664 original size:21 final size:21
Alignment explanation
Indices: 4702633--4702711 Score: 131
Period size: 21 Copynumber: 3.7 Consensus size: 21
4702623 TTATATTGGG
4702633 CTATGGTTTATGGTTTATAGT
1 CTATGGTTTATGGTTTATAGT
* *
4702654 TTATAGTTTATGGTTTATAGT
1 CTATGGTTTATGGTTTATAGT
4702675 CTATGGTTTATGGTTTATAGT
1 CTATGGTTTATGGTTTATAGT
4702696 CTATGGTTTAATGGTT
1 CTATGGTTT-ATGGTT
4702712 AATGAATGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
21 47 0.89
22 6 0.11
ACGTcount: A:0.20, C:0.04, G:0.23, T:0.53
Consensus pattern (21 bp):
CTATGGTTTATGGTTTATAGT
Found at i:4705460 original size:29 final size:29
Alignment explanation
Indices: 4705423--4705480 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
4705413 TAAAAAAGCT
*
4705423 AAAACAAGAAAAGAAAAAAAAAAAAAAAA
1 AAAAAAAGAAAAGAAAAAAAAAAAAAAAA
* *
4705452 AAAAAAAGAAAAGAAAAGAAGAAAAAAAA
1 AAAAAAAGAAAAGAAAAAAAAAAAAAAAA
4705481 GATGAGAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (29 bp):
AAAAAAAGAAAAGAAAAAAAAAAAAAAAA
Found at i:4705499 original size:1 final size:1
Alignment explanation
Indices: 4705431--4705480 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
4705421 CTAAAACAAG
* * * * *
4705431 AAAAGAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4705481 GATGAGAGAT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:4708676 original size:24 final size:24
Alignment explanation
Indices: 4708649--4708697 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
4708639 TGCATGACAT
4708649 TGTACATAAATGTTTTATACATCA
1 TGTACATAAATGTTTTATACATCA
*
4708673 TGTACATAGATGTTTTATACATCA
1 TGTACATAAATGTTTTATACATCA
4708697 T
1 T
4708698 CAGGAAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (24 bp):
TGTACATAAATGTTTTATACATCA
Found at i:4709185 original size:7 final size:7
Alignment explanation
Indices: 4709173--4709254 Score: 74
Period size: 7 Copynumber: 11.6 Consensus size: 7
4709163 GGGTTCTCAG
4709173 GGTTTAT
1 GGTTTAT
4709180 GGTTTAT
1 GGTTTAT
*
4709187 AGTTTAT
1 GGTTTAT
* *
4709194 AGTCTAT
1 GGTTTAT
* *
4709201 TGTTTGT
1 GGTTTAT
4709208 GGTTTAT
1 GGTTTAT
* *
4709215 AGTCTAT
1 GGTTTAT
4709222 GGTTTAT
1 GGTTTAT
4709229 GGTTTAT
1 GGTTTAT
* *
4709236 AGTCTAT
1 GGTTTAT
4709243 GGTTTAAT
1 GGTTT-AT
4709251 GGTT
1 GGTT
4709255 AATGAATGAT
Statistics
Matches: 59, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
7 53 0.90
8 6 0.10
ACGTcount: A:0.18, C:0.04, G:0.24, T:0.54
Consensus pattern (7 bp):
GGTTTAT
Found at i:4709212 original size:21 final size:21
Alignment explanation
Indices: 4709177--4709254 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
4709167 TCTCAGGGTT
*
4709177 TATGGTTTATAGTTTATAGTC
1 TATGGTTTATGGTTTATAGTC
* *
4709198 TATTGTTTGTGGTTTATAGTC
1 TATGGTTTATGGTTTATAGTC
4709219 TATGGTTTATGGTTTATAGTC
1 TATGGTTTATGGTTTATAGTC
4709240 TATGGTTTAATGGTT
1 TATGGTTT-ATGGTT
4709255 AATGAATGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
21 45 0.88
22 6 0.12
ACGTcount: A:0.19, C:0.04, G:0.23, T:0.54
Consensus pattern (21 bp):
TATGGTTTATGGTTTATAGTC
Found at i:4710001 original size:20 final size:19
Alignment explanation
Indices: 4709958--4710002 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
4709948 CAAAATGGCC
*
4709958 TAATTTCACATTCTAACAT
1 TAATTTCACATTCTAAAAT
*
4709977 CAATTTCAACATTCTAAAAT
1 TAATTTC-ACATTCTAAAAT
4709997 TAATTT
1 TAATTT
4710003 GCAGCATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.40, C:0.18, G:0.00, T:0.42
Consensus pattern (19 bp):
TAATTTCACATTCTAAAAT
Found at i:4711383 original size:22 final size:20
Alignment explanation
Indices: 4711358--4711401 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
4711348 ATGGAACTCG
4711358 GAGAAGAATAAGAAAAGAAAAT
1 GAGAAGAA-AAGAAAA-AAAAT
*
4711380 GAGAAGGAAAGAAAAAAAAT
1 GAGAAGAAAAGAAAAAAAAT
4711400 GA
1 GA
4711402 AGAGAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 7 0.33
22 7 0.33
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (20 bp):
GAGAAGAAAAGAAAAAAAAT
Found at i:4716073 original size:226 final size:219
Alignment explanation
Indices: 4715648--4716101 Score: 630
Period size: 226 Copynumber: 2.0 Consensus size: 219
4715638 GAATTAGAAA
*
4715648 CCGACCCGACCCGAAATAAAAAAAATATTTTTATTCAATAAAAACAGTGACTTAATTGAAAACAA
1 CCGACCCGACCCAAAATAAAAAAAATATTTTTATTCAATAAAAACAGTGACTTAATTGAAAACAA
* *
4715713 AATATATATAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATTTTTTGG
66 AATATATAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATTATTT--
* * * *
4715778 GTCGGGTCGGGTATTTTTCACCATAAACTCGACCCGACCCGAATATCACACTTAAAAAAACCGAC
129 GTCGGGTCAGGTATTTTTCACCAAAAACTCGACCCAACCCGAATATCACACTTAAAAAAACCAAC
* *
4715843 CCGACCTGACCGAAATAAACTTTCAC
194 CCGACCCGACCAAAATAAACTTTCAC
* *
4715869 CCGACTCGACCCAAAATAATAAAAAAATATTTTTATTCAATAAAAACAGTGACTTTATTGGGAAA
1 CCGACCCGACCCAAAAT-A-AAAAAAATATTTTTATTCAATAAAAACAGTGACTTAATT--GAAA
4715934 A-AAATTATATATAGAGGGGTATTATTGTAATTATT-CTAAATATATAAGGTAAAATTATATA-T
62 ACAAA--ATATATAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATT
4715996 ATTT-TCGGGTCAGGTATTTTTCACCCTAAACCCGAACTCGACCCAACCCGAATATCACACTT-A
125 ATTTGTCGGGTCAGGTATTTTTCA-CC-AAA----AACTCGACCCAACCCGAATATCACACTTAA
*
4716059 AAAAACCAACCCGACCCGACCAAAATAAAGTTTCAC
184 AAAAACCAACCCGACCCGACCAAAATAAACTTTCAC
*
4716095 CTGACCC
1 CCGACCC
4716102 AGCCCGAATA
Statistics
Matches: 207, Mismatches: 14, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
221 33 0.16
222 3 0.01
223 40 0.19
224 7 0.03
225 31 0.15
226 66 0.32
227 27 0.13
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (219 bp):
CCGACCCGACCCAAAATAAAAAAAATATTTTTATTCAATAAAAACAGTGACTTAATTGAAAACAA
AATATATAGAGGGGTATTATTGTAATTATTCCTAAATATATAAGGTAAAATTATATATTATTTGT
CGGGTCAGGTATTTTTCACCAAAAACTCGACCCAACCCGAATATCACACTTAAAAAAACCAACCC
GACCCGACCAAAATAAACTTTCAC
Found at i:4720927 original size:17 final size:17
Alignment explanation
Indices: 4720905--4720946 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
4720895 ACTTTGACCA
4720905 AAAAGTCAAAATTTTCG
1 AAAAGTCAAAATTTTCG
* *
4720922 AAAAGTTAAAATTTTTG
1 AAAAGTCAAAATTTTCG
4720939 AAAAGTCA
1 AAAAGTCA
4720947 TATTTTGTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.31
Consensus pattern (17 bp):
AAAAGTCAAAATTTTCG
Found at i:4721759 original size:38 final size:39
Alignment explanation
Indices: 4721669--4721761 Score: 102
Period size: 39 Copynumber: 2.4 Consensus size: 39
4721659 TCTATGACTT
* *
4721669 GTAAGACCTTACCGCAGGCTCCTCGACTATGTGCTCATG
1 GTAAGACCTTACTGCAGGCTCATCGACTATGTGCTCATG
* * *
4721708 GTAAGTCCTTACTGCAGGCTCATC-TCTTTGTG-T-ATAG
1 GTAAGACCTTACTGCAGGCTCATCGACTATGTGCTCAT-G
4721745 GATAAGACCTTACTGCA
1 G-TAAGACCTTACTGCA
4721762 TGATCCTCTG
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
36 2 0.04
37 3 0.07
38 20 0.43
39 21 0.46
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.30
Consensus pattern (39 bp):
GTAAGACCTTACTGCAGGCTCATCGACTATGTGCTCATG
Found at i:4727045 original size:120 final size:120
Alignment explanation
Indices: 4726875--4727104 Score: 370
Period size: 120 Copynumber: 1.9 Consensus size: 120
4726865 CTTTAAATAA
* * * *
4726875 AGAGCACCTGAAGAGTGATGTGACCAAATGTGAGTCTGTTTTAGGGTGTGTGTCTCCAATCATTA
1 AGAGCACCTGAAGAGTGATGTGAACAAATCTGAGTATGTTTTAGGGTGTGTGTCTCCAATCATCA
* * * *
4726940 AAGCTGTCTCTGAAGATATTCAGGGTGTTTCGGTGAATTTGGATGGTAACTGTGC
66 AAGCTCTCTCTGAAGACATCCACGGTGTTTCGGTGAATTTGGATGGTAACTGTGC
*
4726995 AGAGCATCTGAAGAGTGATGTGAACAAATCTGAGTATGTTTTAGGGTGTGTGTCTCCAATCATCA
1 AGAGCACCTGAAGAGTGATGTGAACAAATCTGAGTATGTTTTAGGGTGTGTGTCTCCAATCATCA
*
4727060 AAGCTCTCTCTGAAGACATCCACGGTGTTTCTGTGAATTTGGATG
66 AAGCTCTCTCTGAAGACATCCACGGTGTTTCGGTGAATTTGGATG
4727105 AAAACTCTGC
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (120 bp):
AGAGCACCTGAAGAGTGATGTGAACAAATCTGAGTATGTTTTAGGGTGTGTGTCTCCAATCATCA
AAGCTCTCTCTGAAGACATCCACGGTGTTTCGGTGAATTTGGATGGTAACTGTGC
Found at i:4761493 original size:18 final size:19
Alignment explanation
Indices: 4761458--4761496 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
4761448 TGAGTAAGGT
4761458 AGTATCGATACTCTATGGTG
1 AGTATCGATAC-CTATGGTG
4761478 AGTATCGATA-CTATGGTG
1 AGTATCGATACCTATGGTG
4761496 A
1 A
4761497 TGGGATATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (19 bp):
AGTATCGATACCTATGGTG
Done.