Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8646418
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 25 of 43
Found at i:5125115 original size:15 final size:14
Alignment explanation
Indices: 5125082--5125120 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
5125072 AATGGGAAGT
* *
5125082 AATCCCTGCAAATA
1 AATCTCTGCAAAAA
5125096 AATCTCTGCGAAAAA
1 AATCTCTGC-AAAAA
5125111 AATCTCTGCA
1 AATCTCTGCA
5125121 TATAGACAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.41, C:0.26, G:0.10, T:0.23
Consensus pattern (14 bp):
AATCTCTGCAAAAA
Found at i:5125737 original size:23 final size:25
Alignment explanation
Indices: 5125711--5125756 Score: 62
Period size: 23 Copynumber: 1.9 Consensus size: 25
5125701 GACCTTTTAA
5125711 AATAATATA-TGA-TTTTT-TTTTGT
1 AATAAT-TACTGAGTTTTTATTTTGT
5125734 AATAATTACTGAGTTTTTATTTT
1 AATAATTACTGAGTTTTTATTTT
5125757 TCTTCCTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 2 0.10
23 9 0.45
24 5 0.25
25 4 0.20
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.59
Consensus pattern (25 bp):
AATAATTACTGAGTTTTTATTTTGT
Found at i:5127862 original size:27 final size:27
Alignment explanation
Indices: 5127830--5127893 Score: 128
Period size: 27 Copynumber: 2.4 Consensus size: 27
5127820 ACTTTTATTT
5127830 TAATAATTTAATACTAATATCTTTAAA
1 TAATAATTTAATACTAATATCTTTAAA
5127857 TAATAATTTAATACTAATATCTTTAAA
1 TAATAATTTAATACTAATATCTTTAAA
5127884 TAATAATTTA
1 TAATAATTTA
5127894 TTATTTTTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (27 bp):
TAATAATTTAATACTAATATCTTTAAA
Found at i:5127863 original size:16 final size:16
Alignment explanation
Indices: 5127839--5127890 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 16
5127829 TTAATAATTT
*
5127839 AATACTAATATCTTTA
1 AATAATAATATCTTTA
5127855 AATAAT-A-A--TTT-
1 AATAATAATATCTTTA
*
5127866 AATACTAATATCTTTA
1 AATAATAATATCTTTA
5127882 AATAATAAT
1 AATAATAAT
5127891 TTATTATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 10
0.68 0.07 0.24
Matches are distributed among these distances:
11 5 0.18
12 4 0.14
13 1 0.04
14 1 0.04
15 4 0.14
16 13 0.46
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (16 bp):
AATAATAATATCTTTA
Found at i:5142063 original size:21 final size:23
Alignment explanation
Indices: 5142034--5142083 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
5142024 GTATTACCGA
*
5142034 TATTTTATTTT-T-TATATATTT
1 TATTCTATTTTCTGTATATATTT
5142055 TATTCTATTTTCTGTATATATTT
1 TATTCTATTTTCTGTATATATTT
*
5142078 TGTTCT
1 TATTCT
5142084 GTATATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.40
22 1 0.04
23 14 0.56
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.70
Consensus pattern (23 bp):
TATTCTATTTTCTGTATATATTT
Found at i:5144247 original size:23 final size:23
Alignment explanation
Indices: 5144213--5144277 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
5144203 CACCACAACT
*
5144213 CGTATAAATGCACCGAAGTGACA
1 CGTAGAAATGCACCGAAGTGACA
* * * *
5144236 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGACA
5144259 CGTAGAAATGCACCGAAGT
1 CGTAGAAATGCACCGAAGT
5144278 TCCATATAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.18
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGACA
Found at i:5149351 original size:23 final size:23
Alignment explanation
Indices: 5149291--5149354 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
5149281 CAACTCGTAT
* *
5149291 AAATGCACCGAAGTACCACGTAG
1 AAATGCACCGAAGTGCCACGGAG
* * *
5149314 AATTGCACTGTAGTGCCACGGAG
1 AAATGCACCGAAGTGCCACGGAG
5149337 AAATGCACCGAAGTGCCA
1 AAATGCACCGAAGTGCCA
5149355 TATAAGATGT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.16
Consensus pattern (23 bp):
AAATGCACCGAAGTGCCACGGAG
Found at i:5158548 original size:890 final size:891
Alignment explanation
Indices: 5156255--5158892 Score: 5143
Period size: 886 Copynumber: 3.0 Consensus size: 891
5156245 TTCGTAGGAG
5156255 CTAGTGATGCCGCTGATCGTGATCAGCAGGCTCAGTAGTAGGCTTTCTTATCAGACTACTTAGAC
1 CTAGTGATGCCGCTGATCGTGATCAGCAGGCTCAGTAGTAGGCTTTCTTATCAGACTACTTAGAC
*
5156320 CGATACATGAATGTTTCCTGATGGTGTTACATTACTGGTTTAAACTACTCATCTGAATTGTTTTA
66 CGATACATGAATGTTTCCTGATGGTGTTACATTACTGGTTTAAACTATTCATCTGAATTGTTTTA
*
5156385 GATTTCTGATAGTTCTGAATATTTTTACGACATGATACCTAATTTCTTGAATATTGTTTATCTGA
131 GATTTCTGATAGTTCTGAATATTTTTACGACATGATACCTAATTTCTTGAATATTGTTAATCTGA
5156450 TATATGATTTACTGTATATTTATGATATAATGTCTGATTTTTGTATTTCTGTCTCTGATTTCTAA
196 TATATGATTTACTGTATATTTATGATATAATGTCTGATTTTTGTATTTCTGTCTCTGATTTCTAA
5156515 GTCTAGAATATTTTCATGTTTTAATGGATTAAACTATCGTTTTCACACTAATACATACATGTTTA
261 GTCTAGAATATTTTCATGTTTTAATGGATTAAACTATCGTTTTCACACTAATACATACATGTTTA
5156580 TTATTGTCATTGAGGGTATTATTGGAGGAAGTATATCAGGCCTAGTCTATGACTTGTAAGACTTT
326 TTATTGTCATTGAGGGTATTATTGGAGGAAGTATATCAGGCCTAGTCTATGACTTGTAAGACTTT
5156645 ACTGCAGGCTCCTCTGCTTTGTGCTCAGGGTAAGTCCTTACCGTAGATCATTATGATATATGTAT
391 ACTGCAGGCTCCTCTGCTTTGTGCTCAGGGTAAGTCCTTACCGTAGATCATTATGATATATGTAT
5156710 AAGGCCTTACCGAGTGTACATGTGGGTTTATGGTTCTGAGGAACCTACACATTATGGTGATCGGA
456 AAGGCCTTACCGAGTGTACATGTGGGTTTATGGTTCTGAGGAACCTACACATTATGGTGATCGGA
5156775 TGAGGGTAGTGGTTATATTTTTAAAATGCGTTTGATAAACTGATTTTTTTACTGAAGTATTTTAT
521 TGAGGGTAGTGGTTATATTTTTAAAATGCGTTTGATAAACTGATTTTTTTACTGAAGTATTTTAT
5156840 CTGTACGTTTTTATATATCGTAAGGAGCACACTGAGATTTTTAGCTCATTCTGTAAATTTTAACT
586 CTGTACGTTTTTATATATCGTAAGGAGCACACTGAGATTTTTAGCTCATTCTGTAAATTTTAACT
5156905 TTTTTCAGATAGTAGCAGACCGTAGGCTAGCAGACTTGACATTAGGAGGATAGACTACTCCTATT
651 TTTTTCAGATAGTAGCAGACCGTAGGCTAGCAGACTTGACATTAGGAGGATAGACTACTCCTATT
5156970 TTTGTACCACTGTATATATCTATATGTCTTTTTGTTATATTTTGGTGAGTGGTGACACTTGTTTT
716 TTTGTACCACTG-ATATATCTATATGTCTTTTTGTTATATTTTGGTGAGTGGTGACACTTGTTTT
5157035 TGCTACATTCTCGATATATTTGTATTACCAGTATTTTGTTTTGTATATGTTTTATACGATTTC--
780 TGCTACATTCTCGATATATTTGTATTACCAGTATTTTGTTTTGTATATGTTTTATACGATTTCTT
5157098 ---T-TATATATATATATATGTTTATCGTATGAACTTTTCTTATGAT
845 ATATATATATATATATATATGTTTATCGTATGAACTTTTCTTATGAT
5157141 CTAGTGATGCCGCTGATCGTGATCAGCAGGCTCAGTAGTAGGCTTTCTTATCAGACTACTTAGAC
1 CTAGTGATGCCGCTGATCGTGATCAGCAGGCTCAGTAGTAGGCTTTCTTATCAGACTACTTAGAC
5157206 CGATACATGAATGTTTCCTGATGGTGTTACATTACTGGTTTAAACTATTCATCTGAATTGTTTTA
66 CGATACATGAATGTTTCCTGATGGTGTTACATTACTGGTTTAAACTATTCATCTGAATTGTTTTA
5157271 GATTTCTGATAGTTCTGAATATTTTTACGACATGATACCTAATTTCTTGAATATTGTTAATCTGA
131 GATTTCTGATAGTTCTGAATATTTTTACGACATGATACCTAATTTCTTGAATATTGTTAATCTGA
5157336 TATATGATTTACTGTATATTTATGATATAATGTCTGATTTTTGTATTTCTGTCTCTGATTTCTAA
196 TATATGATTTACTGTATATTTATGATATAATGTCTGATTTTTGTATTTCTGTCTCTGATTTCTAA
5157401 GTCTAGAATATTTTCATGTTTTAATGGATTAAACTATCGTTTTCACACTAATACATACATGTTTA
261 GTCTAGAATATTTTCATGTTTTAATGGATTAAACTATCGTTTTCACACTAATACATACATGTTTA
5157466 TTATTGTCATTGAGGGTATTATTGGAGGAAGTATATCAGGCCTAGTCTATGACTTGTAAGACTTT
326 TTATTGTCATTGAGGGTATTATTGGAGGAAGTATATCAGGCCTAGTCTATGACTTGTAAGACTTT
5157531 ACTGCAGGCTCCTCTGCTTTGTGCTCAGGGTAAGTCCTTACCGTAGATCATTATGATATATGTAT
391 ACTGCAGGCTCCTCTGCTTTGTGCTCAGGGTAAGTCCTTACCGTAGATCATTATGATATATGTAT
5157596 AAGGCCTTACCGAGTGTACATGTGGGTTTATGGTTCTGAGGAACCTACACATTATGGTGATCGGA
456 AAGGCCTTACCGAGTGTACATGTGGGTTTATGGTTCTGAGGAACCTACACATTATGGTGATCGGA
5157661 TGAGGGTAGTGGTTATATTTTTAAAATGCGTTTGATAAACTGATTTTTTTACTGAAGTATTTTAT
521 TGAGGGTAGTGGTTATATTTTTAAAATGCGTTTGATAAACTGATTTTTTTACTGAAGTATTTTAT
5157726 CTGTACGTTTTTATATATCGTAAGGAGCACACTGAGATTTTTAGCTCATTCTGTAAATTTTAACT
586 CTGTACGTTTTTATATATCGTAAGGAGCACACTGAGATTTTTAGCTCATTCTGTAAATTTTAACT
5157791 TTTTTCAGATAGTAGCAGACCGTAGGCTAGCAGACTTGACATTAGGAGGATAGACTACTCCTATT
651 TTTTTCAGATAGTAGCAGACCGTAGGCTAGCAGACTTGACATTAGGAGGATAGACTACTCCTATT
5157856 TTTGTACCACTG-TATATCTATATGTCTTTTTGTTATATTTTGGTGAGTGGTGACACTTGTTTTT
716 TTTGTACCACTGATATATCTATATGTCTTTTTGTTATATTTTGGTGAGTGGTGACACTTGTTTTT
5157920 GCTACATTCTCGATATATTTGTATTACCAGTATTTTGTTTTGTATATGTTTTATACGATTTCTTA
781 GCTACATTCTCGATATATTTGTATTACCAGTATTTTGTTTTGTATATGTTTTATACGATTTCTTA
5157985 TATATATATATATATATATGTTTATCGTATGAACTTTTCTTATGAT
846 TATATATATATATATATATGTTTATCGTATGAACTTTTCTTATGAT
5158031 CTAGTGATGCCGCTGATCGTGATCAGCAGGCTCAGTAGTAGGCTTTCTTATCAGACTACTTAGAC
1 CTAGTGATGCCGCTGATCGTGATCAGCAGGCTCAGTAGTAGGCTTTCTTATCAGACTACTTAGAC
*
5158096 CGATATATGAATGTTTCCTGATGGTGTTACATTACTGGTTTAAACTATTCATCTGAATTGTTTTA
66 CGATACATGAATGTTTCCTGATGGTGTTACATTACTGGTTTAAACTATTCATCTGAATTGTTTTA
5158161 GATTTCTGATAGTTCTGAATATTTTTACGACATGATACCTAATTTCTTGAATATTGTTAATCTGA
131 GATTTCTGATAGTTCTGAATATTTTTACGACATGATACCTAATTTCTTGAATATTGTTAATCTGA
5158226 TATATGATTTACTGTATATTTATGATATAATGTCTGATTTTTGTATTTCTGTCTCTGATTTCTAA
196 TATATGATTTACTGTATATTTATGATATAATGTCTGATTTTTGTATTTCTGTCTCTGATTTCTAA
*
5158291 GTCTAGAGTATTTTCATGTTTTAATGGATTAAACTATCGTTTTCACACTAATACATACATGTTTA
261 GTCTAGAATATTTTCATGTTTTAATGGATTAAACTATCGTTTTCACACTAATACATACATGTTTA
5158356 TTATTGTCATTGAGGGTATTATTGGAGGAAGTATATCAGGCCTAGTCTATGACTTGTAAGACTTT
326 TTATTGTCATTGAGGGTATTATTGGAGGAAGTATATCAGGCCTAGTCTATGACTTGTAAGACTTT
5158421 ACTGCAGGCTCCTCTGCTTTGTGCTCAGGGTAAGTCCTTACCGTAGATCATTATGATATATGTAT
391 ACTGCAGGCTCCTCTGCTTTGTGCTCAGGGTAAGTCCTTACCGTAGATCATTATGATATATGTAT
5158486 AAGGCCTTACCGAGTGTACATGTGGGTTTATGGTTCTGAGGAACCTACACATTATGGTGATCGGA
456 AAGGCCTTACCGAGTGTACATGTGGGTTTATGGTTCTGAGGAACCTACACATTATGGTGATCGGA
5158551 TGAGGGTAGTGGTTATATTTTTAAAATGCG-TTGATAAACTGATTTTTTTACTGAAGTATTTTAT
521 TGAGGGTAGTGGTTATATTTTTAAAATGCGTTTGATAAACTGATTTTTTTACTGAAGTATTTTAT
5158615 CTGTACG-TTTT-TATATCGTAAGGAGCACACTGAGATTTTTAGCTCATTCTGTAAATTTTAACT
586 CTGTACGTTTTTATATATCGTAAGGAGCACACTGAGATTTTTAGCTCATTCTGTAAATTTTAACT
*
5158678 TTTTTCAGATAGTAGCAGACTGTAGGCTAGCAGACTTGACATTAGGAGGATAGACTACTCCTATT
651 TTTTTCAGATAGTAGCAGACCGTAGGCTAGCAGACTTGACATTAGGAGGATAGACTACTCCTATT
5158743 TTTGTACCACTGTATATATCTATATGTCTTTTTGTTATATTTTGGTGAGTGGTGACACTTGTTTT
716 TTTGTACCACTG-ATATATCTATATGTCTTTTTGTTATATTTTGGTGAGTGGTGACACTTGTTTT
5158808 TGCTACATTCTCGATATATTTGTATTACCAGTATTTTGTTTTGTATATGTTTTATACGATTTCTT
780 TGCTACATTCTCGATATATTTGTATTACCAGTATTTTGTTTTGTATATGTTTTATACGATTTCTT
5158873 ATATATATATATATATATAT
845 ATATATATATATATATATAT
5158893 ATATATATAT
Statistics
Matches: 1739, Mismatches: 5, Indels: 13
0.99 0.00 0.01
Matches are distributed among these distances:
884 114 0.07
886 725 0.42
887 128 0.07
888 4 0.00
889 178 0.10
890 590 0.34
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (891 bp):
CTAGTGATGCCGCTGATCGTGATCAGCAGGCTCAGTAGTAGGCTTTCTTATCAGACTACTTAGAC
CGATACATGAATGTTTCCTGATGGTGTTACATTACTGGTTTAAACTATTCATCTGAATTGTTTTA
GATTTCTGATAGTTCTGAATATTTTTACGACATGATACCTAATTTCTTGAATATTGTTAATCTGA
TATATGATTTACTGTATATTTATGATATAATGTCTGATTTTTGTATTTCTGTCTCTGATTTCTAA
GTCTAGAATATTTTCATGTTTTAATGGATTAAACTATCGTTTTCACACTAATACATACATGTTTA
TTATTGTCATTGAGGGTATTATTGGAGGAAGTATATCAGGCCTAGTCTATGACTTGTAAGACTTT
ACTGCAGGCTCCTCTGCTTTGTGCTCAGGGTAAGTCCTTACCGTAGATCATTATGATATATGTAT
AAGGCCTTACCGAGTGTACATGTGGGTTTATGGTTCTGAGGAACCTACACATTATGGTGATCGGA
TGAGGGTAGTGGTTATATTTTTAAAATGCGTTTGATAAACTGATTTTTTTACTGAAGTATTTTAT
CTGTACGTTTTTATATATCGTAAGGAGCACACTGAGATTTTTAGCTCATTCTGTAAATTTTAACT
TTTTTCAGATAGTAGCAGACCGTAGGCTAGCAGACTTGACATTAGGAGGATAGACTACTCCTATT
TTTGTACCACTGATATATCTATATGTCTTTTTGTTATATTTTGGTGAGTGGTGACACTTGTTTTT
GCTACATTCTCGATATATTTGTATTACCAGTATTTTGTTTTGTATATGTTTTATACGATTTCTTA
TATATATATATATATATATGTTTATCGTATGAACTTTTCTTATGAT
Found at i:5158879 original size:2 final size:2
Alignment explanation
Indices: 5158872--5158902 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
5158862 TACGATTTCT
5158872 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5158903 GTTTATCGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5159243 original size:17 final size:16
Alignment explanation
Indices: 5159218--5159253 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
5159208 TTAAATATTG
*
5159218 TTTTAAATAATTATAT
1 TTTTAAATAATAATAT
5159234 TTTTATAATAATAATAT
1 TTTTA-AATAATAATAT
5159251 TTT
1 TTT
5159254 CACCTCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTTAAATAATAATAT
Found at i:5161707 original size:15 final size:15
Alignment explanation
Indices: 5161687--5161716 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
5161677 AGAAAGCGTC
5161687 ATATCTATACGTTAT
1 ATATCTATACGTTAT
*
5161702 ATATCTATATGTTAT
1 ATATCTATACGTTAT
5161717 TAATACGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (15 bp):
ATATCTATACGTTAT
Found at i:5162521 original size:21 final size:21
Alignment explanation
Indices: 5162483--5162522 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
5162473 AAAAAATATT
* * *
5162483 AAGACCTTAAAGTTTTTTAAC
1 AAGACCCTAAAATGTTTTAAC
5162504 AAGACCCTAAAATGTTTTA
1 AAGACCCTAAAATGTTTTA
5162523 CCAAATTCCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (21 bp):
AAGACCCTAAAATGTTTTAAC
Found at i:5163488 original size:15 final size:15
Alignment explanation
Indices: 5163470--5163511 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
5163460 TAGTAATTCA
*
5163470 ATTTTTATTTTTAAT
1 ATTTTTATATTTAAT
*
5163485 ATTTATATATTTAAT
1 ATTTTTATATTTAAT
5163500 -TTTTCTATATTT
1 ATTTT-TATATTT
5163512 GTATTGTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 3 0.13
15 20 0.87
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTATATTTAAT
Found at i:5169058 original size:45 final size:45
Alignment explanation
Indices: 5168962--5169067 Score: 124
Period size: 45 Copynumber: 2.4 Consensus size: 45
5168952 GGTGCACTAA
* * *
5168962 GGGTGCATCGATGCATGAAATGAATTCAATGTTTCAAACAAGTCT
1 GGGTGCATCGATGCATAAAATGAATTCAATGTTTCAAACAAGCCG
* * * * *
5169007 GAGTGCATCGATGTATAAAATGCATTCGATGTTTTAAA-ATAGCCG
1 GGGTGCATCGATGCATAAAATGAATTCAATGTTTCAAACA-AGCCG
5169052 GGGTGCATCGATGCAT
1 GGGTGCATCGATGCAT
5169068 GCCTTATGCA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 1 0.02
45 49 0.98
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (45 bp):
GGGTGCATCGATGCATAAAATGAATTCAATGTTTCAAACAAGCCG
Found at i:5171242 original size:13 final size:14
Alignment explanation
Indices: 5171224--5171252 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5171214 TTTTGAAAAC
5171224 TATTTG-AAAATAA
1 TATTTGAAAAATAA
5171237 TATTTGAAAAATAA
1 TATTTGAAAAATAA
5171251 TA
1 TA
5171253 ATACATATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (14 bp):
TATTTGAAAAATAA
Found at i:5171800 original size:44 final size:44
Alignment explanation
Indices: 5171747--5171843 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 44
5171737 GGCAGTGTGC
*
5171747 ATCGATGCACATTC-AA-GGAGTCCATCGGTGCATCTTCAT-GATGT
1 ATCGATGCACATTCAAAGGGA-TCCATCGATGCA-CTTCATAG-TGT
*
5171791 ATCGATGCACATTCAAAGGGATGCATCGATGCACTTCATAGTGT
1 ATCGATGCACATTCAAAGGGATCCATCGATGCACTTCATAGTGT
5171835 ATCGATGCA
1 ATCGATGCA
5171844 TTATGTACAA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
44 32 0.67
45 13 0.27
46 3 0.06
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (44 bp):
ATCGATGCACATTCAAAGGGATCCATCGATGCACTTCATAGTGT
Found at i:5171840 original size:20 final size:21
Alignment explanation
Indices: 5171770--5171843 Score: 71
Period size: 24 Copynumber: 3.4 Consensus size: 21
5171760 CAAGGAGTCC
*
5171770 ATCGGTGCATCTTCAT-GATGT
1 ATCGATGCA-CTTCATAGATGT
* *
5171791 ATCGATGCACATTCAAAGGGATGC
1 ATCGATGCAC-TTCATA--GATGT
5171815 ATCGATGCACTTCATAG-TGT
1 ATCGATGCACTTCATAGATGT
5171835 ATCGATGCA
1 ATCGATGCA
5171844 TTATGTACAA
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
20 12 0.27
21 13 0.30
23 5 0.11
24 14 0.32
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (21 bp):
ATCGATGCACTTCATAGATGT
Found at i:5181960 original size:39 final size:39
Alignment explanation
Indices: 5181833--5181960 Score: 123
Period size: 39 Copynumber: 3.2 Consensus size: 39
5181823 ACATAATGTA
5181833 ACATTATTAATATGATTTGCGGGATGTAATATATGTGAC
1 ACATTATTAATATGATTTGCGGGATGTAATATATGTGAC
* * * ** * * * * *
5181872 ACATTATTCTGAATGTTATTTTCCTTG-TTTAGTCTATTTGAT
1 ACATTA-T-T-AATATGA-TTTGCGGGATGTAATATATGTGAC
5181914 ACATTATTAATATGATTTGCGGGATGTAATATATGTGAC
1 ACATTATTAATATGATTTGCGGGATGTAATATATGTGAC
5181953 ACATTATT
1 ACATTATT
5181961 CTGAGTATTT
Statistics
Matches: 64, Mismatches: 20, Indels: 10
0.68 0.21 0.11
Matches are distributed among these distances:
38 5 0.08
39 29 0.45
40 2 0.03
41 2 0.03
42 21 0.33
43 5 0.08
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (39 bp):
ACATTATTAATATGATTTGCGGGATGTAATATATGTGAC
Found at i:5185497 original size:16 final size:18
Alignment explanation
Indices: 5185462--5185498 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
5185452 TTATACAATC
5185462 AATATTTATCGTATTTAA
1 AATATTTATCGTATTTAA
*
5185480 AATA-TTATCTTA-TTAA
1 AATATTTATCGTATTTAA
5185496 AAT
1 AAT
5185499 TTCGATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 7 0.39
18 4 0.22
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (18 bp):
AATATTTATCGTATTTAA
Found at i:5188292 original size:36 final size:35
Alignment explanation
Indices: 5188213--5188296 Score: 105
Period size: 35 Copynumber: 2.4 Consensus size: 35
5188203 TTGAAAACAT
** * * *
5188213 TTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAG
1 TTCCCTTGAAACAAAATTTGTCTCCCTTGAGACAG
5188248 TTCCCTTGAAACAAAATTTGTCTCCCTTGAGACAG
1 TTCCCTTGAAACAAAATTTGTCTCCCTTGAGACAG
*
5188283 TTTCTCTTGAAACA
1 -TTCCCTTGAAACA
5188297 TAAACATTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 30 0.71
36 12 0.29
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (35 bp):
TTCCCTTGAAACAAAATTTGTCTCCCTTGAGACAG
Found at i:5188300 original size:100 final size:100
Alignment explanation
Indices: 5188127--5188498 Score: 435
Period size: 100 Copynumber: 3.7 Consensus size: 100
5188117 TAAAAAGAAG
* * * * * * *
5188127 ATTTTATCTCGCTTGAGATAGTTTCCTTTAAACAAAATTTTGTCTCACTTGA-ACAATTTCTCTT
1 ATTTTGTCTCTCTTGAGACAGTTCCCTTGAAACAAAA-TTTGTCTCTCTTGAGACAGTTTCTCTT
*
5188191 GAAACATAAATATTGAAAACATTTCCCTTGAAATGA
65 GAAACATAAATATTGAAAACATTTCCCTTGAAATAA
* *
5188227 ATTTTGTCTCTCTTGAGATAGTTCCCTTGAAACAAAATTTGTCTCCCTTGAGACAGTTTCTCTTG
1 ATTTTGTCTCTCTTGAGACAGTTCCCTTGAAACAAAATTTGTCTCTCTTGAGACAGTTTCTCTTG
* * *
5188292 AAACATAAACATTGAAACCATTTCCATTGAAATAA
66 AAACATAAATATTGAAAACATTTCCCTTGAAATAA
* * *
5188327 ATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
1 ATTTTGTCTCTCTTGAGACAG-TTCCCTTGAAACAAAATTTGTCTCTCTTGAGACAGTTTCTCTT
* * * * *
5188392 GAAACA-AAATCTTTG-AATCTGTTTTCCTTGAAACAA
65 GAAACATAAAT-ATTGAAAAC-ATTTCCCTTGAAATAA
* * * * *
5188428 ATTTCGTCTCCCTTGAGACAATTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT
1 ATTTTGTCTCTCTTGAGACAGTTCCCTTGAAACAAA-ATTTGTCTCTCTTGAGACAGTTTCTCTT
*
5188493 AAAACA
65 GAAACA
5188499 AATTTTATCT
Statistics
Matches: 238, Mismatches: 29, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
99 13 0.05
100 115 0.48
101 110 0.46
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (100 bp):
ATTTTGTCTCTCTTGAGACAGTTCCCTTGAAACAAAATTTGTCTCTCTTGAGACAGTTTCTCTTG
AAACATAAATATTGAAAACATTTCCCTTGAAATAA
Found at i:5188365 original size:36 final size:36
Alignment explanation
Indices: 5188325--5188399 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
5188315 CCATTGAAAT
5188325 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
*
5188361 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
5188397 AAA
1 AAA
5188400 ATCTTTGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (36 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
Found at i:5188460 original size:35 final size:35
Alignment explanation
Indices: 5188414--5188576 Score: 193
Period size: 36 Copynumber: 4.6 Consensus size: 35
5188404 TTGAATCTGT
* * *
5188414 TTTCCTTGAAACAAATTTCGTCTCCCTTGAGACAA
1 TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
5188449 TTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
1 TTTCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAG
* * * *
5188485 TTTCTCTTAAAACAAATTTTATCTCTCTTAAGACAT
1 TTTC-CTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
5188521 TTTCTCTTAAAAC-AATTTTGTCTCTCTTGAGACAG
1 TTTC-CTTGAAACAAATTTTGTCTCTCTTGAGACAG
* *
5188556 TTTCCCTTGAAAAAAACTTTG
1 TTT-CCTTGAAACAAATTTTG
5188577 AATCTATTAT
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
35 43 0.39
36 58 0.52
37 10 0.09
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (35 bp):
TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:5188483 original size:36 final size:35
Alignment explanation
Indices: 5188312--5188399 Score: 131
Period size: 36 Copynumber: 2.4 Consensus size: 35
5188302 ATTGAAACCA
*
5188312 TTTCCATTGAAATAAATTTTGTCTCTCTTGAGACAG
1 TTTCC-TTGAAACAAATTTTGTCTCTCTTGAGACAG
*
5188348 TTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAG
1 TTT-CCTTGAAACAAATTTTGTCTCTCTTGAGACAG
5188384 TTTCCCTTGAAACAAA
1 TTT-CCTTGAAACAAA
5188400 ATCTTTGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
36 46 0.96
37 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (35 bp):
TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:5188499 original size:101 final size:99
Alignment explanation
Indices: 5188133--5188896 Score: 557
Period size: 101 Copynumber: 7.6 Consensus size: 99
5188123 GAAGATTTTA
* * * * * *
5188133 TCTCGCTTGAGATAGTTTCCTTTAAACAAAATTTTGTCTCACTTGA-ACAATTTCTCTTGAAACA
1 TCTCCCTTGAGACAGTTTCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
* * * ** *
5188197 TAAAT-ATTGAAAACATTTCCCTTGAAATGAATTTTG
65 -AAATCTTTG-AAACGTTTTCCTTGAAACAAATTTCG
* * * * * * *
5188233 TCTCTCTTGAGATAGTTCCCTTGAAACAAAATTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAT
1 TCTCCCTTGAGACAGTTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA-
* ** * *
5188298 AAA-CATTGAAACCATTTCCATTGAAATAAATTTTG
65 AAATCTTTGAAACGTTTTCC-TTGAAACAAATTTCG
*
5188333 TCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
1 TCTCCCTTGAGACAGTTT-CCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
*
5188398 AAATCTTTGAATCTGTTTTCCTTGAAACAAATTTCG
65 AAATCTTTGAAAC-GTTTTCCTTGAAACAAATTTCG
* * * *
5188434 TCTCCCTTGAGACAATTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACA
1 TCTCCCTTGAGACAGTTTCCTTAAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
* * * *
5188499 AATTTTATCTCTCTTAAGACATTTTCTCTTAAAAC-AATTTTG
65 AA----ATCT-T-TGAA-ACGTTTTC-CTTGAAACAAATTTCG
* * ** *
5188541 TCTCTCTTGAGACAGTTTCCCTTGAAAA-AAACTTTGAATCTATT-----A---T-CCTTGAAAC
1 TCTCCCTTGAGACAGTTT-CCTT-AAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
* *
5188596 AAAGTTTTGTCTCTCTTGAGACAG-TTTCTCTT-AAACAAATTTCG
64 AAA-------ATCT-TTGAAAC-GTTTTC-CTTGAAACAAATTTCG
* *
5188640 TCTCCCTTGAGACAATTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCGTGAAAC-
1 TCTCCCTTGAGACAGTTTC-CTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
* * * *
5188704 -AATTTTTGAATCTGTTTTCCTTAAAAC-AATTTCA
65 AAATCTTTGAAAC-GTTTTCCTTGAAACAAATTTCG
* * *
5188738 TGTCCCTTGAGACAGTTAAT-TTTAAAA-ACATTTTGTCTCTCTTGAGA-ATGTTTCCCTTGAAA
1 TCTCCCTTGAGACAGTT--TCCTTAAAACAAATTTTGTCTCTCTTGAGACA-GTTTCCCTTGAAA
* *
5188800 CGAAATCTTT-AAATCTGTTTTCCTTGAAATAAATTTCG
63 CAAAATCTTTGAAA-C-GTTTTCCTTGAAACAAATTTCG
* *
5188838 TCTCCCTTGAGACAGTTTCTTTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCCCTT
1 TCTCCCTTGAGACAGTTTC-CTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
5188897 AAAATTTTGT
Statistics
Matches: 545, Mismatches: 73, Indels: 91
0.77 0.10 0.13
Matches are distributed among these distances:
96 1 0.00
97 32 0.06
98 58 0.11
99 102 0.19
100 125 0.23
101 147 0.27
102 7 0.01
104 1 0.00
105 4 0.01
106 2 0.00
107 40 0.07
108 23 0.04
109 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (99 bp):
TCTCCCTTGAGACAGTTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAA
AATCTTTGAAACGTTTTCCTTGAAACAAATTTCG
Found at i:5188649 original size:35 final size:36
Alignment explanation
Indices: 5188592--5188694 Score: 163
Period size: 36 Copynumber: 2.9 Consensus size: 36
5188582 ATTATCCTTG
5188592 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT-
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTA
* * *
5188628 AAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTA
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTA
5188664 AAACAAATTTTGTCTCTCTTGAGACAGTTTC
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTC
5188695 CCGTGAAACA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
35 25 0.42
36 35 0.58
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTA
Found at i:5188661 original size:170 final size:172
Alignment explanation
Indices: 5188325--5188709 Score: 589
Period size: 170 Copynumber: 2.2 Consensus size: 172
5188315 CCATTGAAAT
5188325 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC-AATTTTGTCTCTCTTGAGACAGTTTCCC
* *
5188390 TTGAAACAAAATCTTTGAATCTGTTTTCCTTGAAACAAATTTCGTCTCCCTTGAGACAATTTCCT
65 TTGAAACAAAATCTTTGAATCTATTATCCTTGAAACAAATTTCGTCTCCCTTGAGACAATTTCCT
* * *
5188455 TGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAAC
130 TGAAACAAAGTTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
* * * *
5188498 AAATTTTATCTCTCTTAAGACATTTTCTCTTAAAACAATTTTGTCTCTCTTGAGACAGTTTCCCT
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAATTTTGTCTCTCTTGAGACAGTTTCCCT
* * *
5188563 TGAAA-AAAA-CTTTGAATCTATTATCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTC
66 TGAAACAAAATCTTTGAATCTATTATCCTTGAAACAAA-TTTCGTCTCCCTTGAGACAATTTC-C
5188626 TT-AAACAAA-TTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
129 TTGAAACAAAGTTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
* *
5188668 AAATTTTGTCTCTCTTGAGACAGTTTCCCGTGAAACAATTTT
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAATTTT
5188710 TGAATCTGTT
Statistics
Matches: 192, Mismatches: 18, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
170 91 0.47
171 32 0.17
172 37 0.19
173 32 0.17
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (172 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAATTTTGTCTCTCTTGAGACAGTTTCCCT
TGAAACAAAATCTTTGAATCTATTATCCTTGAAACAAATTTCGTCTCCCTTGAGACAATTTCCTT
GAAACAAAGTTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
Found at i:5188704 original size:36 final size:35
Alignment explanation
Indices: 5188590--5188711 Score: 154
Period size: 36 Copynumber: 3.4 Consensus size: 35
5188580 CTATTATCCT
5188590 TGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTC
1 TGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTC
* * * *
5188626 TTAAACAAATTTCGTCTCCCTTGAGACAATTTCTC
1 TGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTC
* *
5188661 TTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
1 -TGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTC
*
5188697 GTGAAACAATTTTTG
1 -TGAAACAAATTTTG
5188712 AATCTGTTTT
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
35 23 0.32
36 50 0.68
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (35 bp):
TGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTC
Found at i:5188767 original size:135 final size:135
Alignment explanation
Indices: 5188226--5188784 Score: 461
Period size: 135 Copynumber: 4.1 Consensus size: 135
5188216 CCTTGAAATG
* * * * * * * *
5188226 AATTTTGTCTCTCTTGAGA-TAGTTCCCTTGAAACAAAATTTGTCTCCCTTGAGACAGTTTCTCT
1 AATTTTGTCTCTCTTGAGACAATTTCTCTTAAAAC-AATTTTGTCTCTCTTGAGACAGTTTCCCG
* * * * * *
5188290 TGAAACATAAACATTGAAACCATT-TCCATTGAAATAAA-TTTTGTCTCTCTTGAGACAGTTTCC
65 TGAAA-A-AAACTTTGAATCTATTATCC-TTAAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCT
5188353 CTTAAAACA
127 CTTAAAACA
* * * ** * * *
5188362 AATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAA-----AATCT-TTGA-ATCTGTTTTCCT
1 AATTTTGTCTCTCTTGAGACAATTTCTCTTAAAACAATTTTGTCTCTCTTGAGA-CAGTTTCCCG
* * *
5188420 TGAAACAAATTTCGTCTCCCTTGAGA-CAATT-TCCTTGAAACAAAGTTTTGTCTCTCTTGAGAC
65 TGAAA-AAA-----ACT---TTGA-ATCTATTATCCTTAAAACAAAGTTTTGTCTCTCTTGAGAC
5188483 AGTTTCTCTTAAAACA
120 AGTTTCTCTTAAAACA
* * * *
5188499 AATTTTATCTCTCTTAAGACATTTTCTCTTAAAACAATTTTGTCTCTCTTGAGACAGTTTCCCTT
1 AATTTTGTCTCTCTTGAGACAATTTCTCTTAAAACAATTTTGTCTCTCTTGAGACAGTTTCCCGT
*
5188564 GAAAAAAACTTTGAATCTATTATCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTT-
66 GAAAAAAACTTTGAATCTATTATCCTTAAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTA
5188628 AAACA
131 AAACA
* *
5188633 AATTTCGTCTCCCTTGAGACAATTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCG
1 AATTTTGTCTCTCTTGAGACAATTTCTCTTAAAAC-AATTTTGTCTCTCTTGAGACAGTTTCCCG
* ** * * ** *
5188698 TGAAACAATTTTTGAATCTGTTTTCCTTAAAAC-AA-TTTCATGTC-C-CTTGAGACAGTTAATT
65 TGAAAAAAACTTTGAATCTATTATCCTTAAAACAAAGTTT--TGTCTCTCTTGAGACAGTTTCTC
5188759 TTAAAA-A
128 TTAAAACA
*
5188766 CATTTTGTCTCTCTTGAGA
1 AATTTTGTCTCTCTTGAGA
5188785 ATGTTTCCCT
Statistics
Matches: 355, Mismatches: 43, Indels: 53
0.79 0.10 0.12
Matches are distributed among these distances:
129 3 0.01
130 18 0.05
131 2 0.01
133 36 0.10
134 50 0.14
135 101 0.28
136 30 0.08
137 90 0.25
138 1 0.00
142 6 0.02
143 17 0.05
144 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.39
Consensus pattern (135 bp):
AATTTTGTCTCTCTTGAGACAATTTCTCTTAAAACAATTTTGTCTCTCTTGAGACAGTTTCCCGT
GAAAAAAACTTTGAATCTATTATCCTTAAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTA
AAACA
Found at i:5188899 original size:36 final size:36
Alignment explanation
Indices: 5188817--5188900 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 36
5188807 TTTAAATCTG
* *
5188817 TTTT-CCTTGAAATAAATTTCGTCTCCCTTGAGACA
1 TTTTCCCTTAAAACAAATTTCGTCTCCCTTGAGACA
* ** * *
5188852 GTTTCTTTTAAAACAAATTTTGTCTCTCTTGAGACA
1 TTTTCCCTTAAAACAAATTTCGTCTCCCTTGAGACA
5188888 TTTTCCCTTAAAA
1 TTTTCCCTTAAAA
5188901 TTTTGTCTCT
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
35 3 0.08
36 35 0.92
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (36 bp):
TTTTCCCTTAAAACAAATTTCGTCTCCCTTGAGACA
Found at i:5188967 original size:30 final size:29
Alignment explanation
Indices: 5188919--5188977 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
5188909 CTCTGGAGAG
5188919 AGTTTCACTTGGAACAAAAATCTTTGAATC
1 AGTTTCACTTGGAAC-AAAATCTTTGAATC
* *
5188949 AGTTTCCCTT-GAAGCAAAATCTTTTAATC
1 AGTTTCACTTGGAA-CAAAATCTTTGAATC
5188978 TATTTTCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.36
Consensus pattern (29 bp):
AGTTTCACTTGGAACAAAATCTTTGAATC
Found at i:5189107 original size:36 final size:36
Alignment explanation
Indices: 5189060--5189130 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
5189050 CTTTTGATAC
*
5189060 TAAGTTGTGTCTCTCTTGAGATAATTTCCCTTAAAA
1 TAAGTTGTGTCTCTCTTGAGACAATTTCCCTTAAAA
* * * *
5189096 TAAGTTTTGTCTCTTTTGAGACAGTTTCTCTTAAA
1 TAAGTTGTGTCTCTCTTGAGACAATTTCCCTTAAA
5189131 GCACCAATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.14, T:0.45
Consensus pattern (36 bp):
TAAGTTGTGTCTCTCTTGAGACAATTTCCCTTAAAA
Found at i:5191074 original size:16 final size:17
Alignment explanation
Indices: 5191044--5191079 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
5191034 TTTATACATC
5191044 AATATTTATCGTATTAA
1 AATATTTATCGTATTAA
*
5191061 AATA-TTATCTTATTAA
1 AATATTTATCGTATTAA
5191077 AAT
1 AAT
5191080 TTCGATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (17 bp):
AATATTTATCGTATTAA
Found at i:5196028 original size:33 final size:33
Alignment explanation
Indices: 5195975--5196121 Score: 165
Period size: 33 Copynumber: 4.4 Consensus size: 33
5195965 TTTGTTTCAA
5195975 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
5196007 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
5196040 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
5196073 TATGTTGATTAATT--AAGTATTCATTAAGTATTTGAAT
1 T-TATCGA--ACTTGGAAGT-TT--TTAAGTATTTGAAT
5196110 TTATCGAACTTG
1 TTATCGAACTTG
5196122 AGGTTTGATG
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
32 11 0.12
33 52 0.55
34 10 0.11
35 1 0.01
36 7 0.07
37 14 0.15
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.46
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:5196305 original size:21 final size:21
Alignment explanation
Indices: 5196235--5196315 Score: 74
Period size: 21 Copynumber: 3.7 Consensus size: 21
5196225 CTTGGAGCGT
* *
5196235 GGGGAATCGGTACCCTCTCAT-
1 GGGGAATCGGTTCCCCCT-ATG
* * *
5196256 AGGGAATCGGTTTCCTCTCATAGG
1 GGGGAATCGG-TTCC-C-CCTATG
5196280 GGGGAATCGGTTCCCCCTATG
1 GGGGAATCGGTTCCCCCTATG
5196301 GGGGAATCGGTTCCC
1 GGGGAATCGGTTCCC
5196316 TCCGAGCATT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 28 0.58
22 4 0.08
23 6 0.12
24 10 0.21
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (21 bp):
GGGGAATCGGTTCCCCCTATG
Found at i:5196583 original size:15 final size:17
Alignment explanation
Indices: 5196557--5196588 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
5196547 TTCTATGGGA
5196557 AAAAACCGGAT-CGGAT
1 AAAAACCGGATCCGGAT
5196573 AAAAACC-GATCCGGAT
1 AAAAACCGGATCCGGAT
5196589 CGGATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (17 bp):
AAAAACCGGATCCGGAT
Found at i:5198234 original size:37 final size:38
Alignment explanation
Indices: 5198182--5198258 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 38
5198172 TAAAAAGAAG
* * *
5198182 ATTTTATCTCGCTTGAGATAGTTTC-CTTTGAAACA-AA
1 ATTTTATCTCACTTGAGACAATTTCTC-TTGAAACATAA
*
5198219 ATTTTGTCTCACTTGAGACAATTTCTCTTGAAACATAA
1 ATTTTATCTCACTTGAGACAATTTCTCTTGAAACATAA
5198257 AT
1 AT
5198259 ATTGAAAACA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
37 29 0.85
38 5 0.15
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (38 bp):
ATTTTATCTCACTTGAGACAATTTCTCTTGAAACATAA
Found at i:5198336 original size:37 final size:37
Alignment explanation
Indices: 5198269--5198355 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 37
5198259 ATTGAAAACA
** * * *
5198269 TTTCCCTTGAAA-TGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTATCTCCCTTGAGACAG
5198305 TTTCCCTTGAAACAAAATTTTATCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTATCTCCCTTGAGACAG
*
5198342 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
5198356 TAAACATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 12 0.27
37 32 0.73
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTATCTCCCTTGAGACAG
Found at i:5198358 original size:102 final size:102
Alignment explanation
Indices: 5198182--5198557 Score: 472
Period size: 102 Copynumber: 3.7 Consensus size: 102
5198172 TAAAAAGAAG
* * * * * *
5198182 ATTTTATCTCGCTTGAGATAGTTTCCTTTGAAACAAAATTTTGTCTCACTTGAGACAATTTCTCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
*
5198247 TGAAACATAAATATTGAAAACATTTCCCTTGAAATGA
66 TGAAACATAAATATTGAAAACATTTCCCTTGAAATAA
* * *
5198284 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTATCTCCCTTGAGACAGTTTCTCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
* * *
5198349 TGAAACATAAACATTGAAACCATTTCCATTGAAATAA
66 TGAAACATAAATATTGAAAACATTTCCCTTGAAATAA
* * *
5198386 ATTTTGTCTCTCTTGAGACAGTTTTCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
* * * * *
5198450 TGAAACA-AAATCTTTG-AATCTGTTTTCCTTGAAACAA
66 TGAAACATAAAT-ATTGAAAAC-ATTTCCCTTGAAATAA
* * * *
5198487 ATTTCGTCTCCCTTGAGACAATTT-CCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
*
5198551 TAAAACA
66 TGAAACA
5198558 AATTTTATCT
Statistics
Matches: 241, Mismatches: 30, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
100 14 0.06
101 104 0.43
102 123 0.51
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (102 bp):
ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
TGAAACATAAATATTGAAAACATTTCCCTTGAAATAA
Found at i:5198424 original size:36 final size:36
Alignment explanation
Indices: 5198384--5198458 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
5198374 CCATTGAAAT
*
5198384 AAATTTTGTCTCTCTTGAGACAGTTTTCCTTAAAAC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
*
5198420 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
5198456 AAA
1 AAA
5198459 ATCTTTGAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (36 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
Found at i:5198489 original size:101 final size:100
Alignment explanation
Indices: 5198182--5198628 Score: 391
Period size: 102 Copynumber: 4.3 Consensus size: 100
5198172 TAAAAAGAAG
* * * * * * *
5198182 ATTTTATCTCGCTTGAGATAG-TTTCCTTTGAAACAAAATTTTGTCTCACTTGAGACAATTTCTC
1 ATTTTGTCTCCCTTGAGACAGTTTTCC-TTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCC
* * **
5198246 TTGAAACATAAAT-ATTGAAAACATTTCCCTTGAAATGA
64 TTGAAACA-AAATCTTTG-AAACATTTTCCTTGAAACAA
* * * * * * *
5198284 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTATCTCCCTTGAGACAGTTTCTCT
1 ATTTTGTCTCCCTTGAGACAGTTTTCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCT
* *
5198349 TGAAACATAAA-CATTGAAACCA-TTTCCATTGAAATAA
65 TGAAACA-AAATCTTTGAAA-CATTTTCC-TTGAAACAA
*
5198386 ATTTTGTCTCTCTTGAGACAGTTTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
1 ATTTTGTCTCCCTTGAGACAGTTTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
* *
5198451 GAAACAAAATCTTTGAATCTGTTTTCCTTGAAACAA
66 GAAACAAAATCTTTGAAAC-ATTTTCCTTGAAACAA
* * * *
5198487 ATTTCGTCTCCCTTGAGACA-ATTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCT
1 ATTTTGTCTCCCTTGAGACAGTTTTCCTTAAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCT
* * *
5198551 TAAAACAAATTTTATCTCTCTTAAGACATTTTCTCTTAAAACAA
65 TGAAACAAA----ATCT-T-TGAA-ACATTTTC-CTTGAAACAA
* * *
5198595 ATTTTTTCTCTCTTGAGACAGTTTCCCTTGAAAA
1 ATTTTGTCTCCCTTGAGACAGTTTTCCTT-AAAA
5198629 AAAAACATTG
Statistics
Matches: 293, Mismatches: 34, Indels: 28
0.83 0.10 0.08
Matches are distributed among these distances:
100 18 0.06
101 107 0.37
102 115 0.39
103 4 0.01
105 4 0.01
106 1 0.00
107 8 0.03
108 27 0.09
109 6 0.02
110 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.39
Consensus pattern (100 bp):
ATTTTGTCTCCCTTGAGACAGTTTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
GAAACAAAATCTTTGAAACATTTTCCTTGAAACAA
Found at i:5198542 original size:36 final size:35
Alignment explanation
Indices: 5198371--5198458 Score: 131
Period size: 36 Copynumber: 2.4 Consensus size: 35
5198361 ATTGAAACCA
*
5198371 TTTCCATTGAAATAAATTTTGTCTCTCTTGAGACAG
1 TTTCC-TTGAAACAAATTTTGTCTCTCTTGAGACAG
*
5198407 TTTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAG
1 -TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
5198443 TTTCCCTTGAAACAAA
1 TTT-CCTTGAAACAAA
5198459 ATCTTTGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
35 3 0.06
36 39 0.83
37 5 0.11
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (35 bp):
TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:5198558 original size:137 final size:133
Alignment explanation
Indices: 5198370--5199033 Score: 477
Period size: 137 Copynumber: 4.9 Consensus size: 133
5198360 CATTGAAACC
*
5198370 ATTTCCATTGAAATAAATTTTGTCTCTCTTGAGACAGTTT-TCCTTAAAACAAATTTTGTCTCTC
1 ATTTCC-TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCT-CTTAAAACAAATTTTGTCTCTC
* *
5198434 TTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCTGTTTTCCTTGAAACAAATTTCGTCTCCC
64 TTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCAGTTTCCCTTGAAACAAA-TT--TCTCCC
5198499 TTGAGA-CA
126 TTGA-ATCA
*
5198507 ATTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTATCTCTCT
1 ATTTCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCT
* * * * * *
5198572 TAAGACATTTTCTCTTAAAACAAATTTTTTCTCTCTTGAGA-CAGTTTCCCTTGAAA-AAA---A
65 TGAGACAGTTTCCCTTGAAACAAA------ATCT-TTGA-ATCAGTTTCCCTTGAAACAAATTTC
** * **
5198632 AACATTGAATTT
122 TCCCTTGAATCA
* * *
5198644 ATTATCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTTCTCTTAAAACAAATTTCGTCTCCC
1 ATT-TCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTC
* * * * * *
5198709 TTGAGACAATTTCTCTTAAAACAAATTTTGTTTCTCTTGAGA-CAGTTTCCCGTGAAACAAAATT
64 TTGAGACAGTTTCCCTTGAAACAAA------ATCT-TTGA-ATCAGTTTCCCTTGAAACAAATTT
*
5198773 -T---TTGAATCTG
121 CTCCCTTGAATC-A
* * ** *
5198783 TTTTCCTTAAAACAAATTTCATGTC-C-CTTGAGACAGTTAATTTTAAAACAAATTTTGTCTCTC
1 ATTTCCTTGAAACAAATTT--TGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTC
* * * * *
5198846 TTGAGA-ATGTTTCCCTTGAAACGAAATCTTTAAATCTGTTTTCCTTGAAATAAATTTCGTCTCC
64 TTGAGACA-GTTTCCCTTGAAACAAAATCTTTGAATCAGTTTCCCTTGAAACAAA-TT--TCTCC
5198910 CTTGAGA-CA
125 CTTGA-ATCA
* * * * *
5198919 GTTTCTTTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCCCTT--AA-AAA-TTTGTCTCTCT
1 ATTTC-CTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCT
* * * *
5198980 GGAGACAGTTTCACTTGGAACAAAAATCTTTGAATCAGTTTCCCTTGAAGCAAA
65 TGAGACAGTTTCCCTTGAAAC-AAAATCTTTGAATCAGTTTCCCTTGAAACAAA
5199034 ATCTTTTAAT
Statistics
Matches: 430, Mismatches: 63, Indels: 71
0.76 0.11 0.13
Matches are distributed among these distances:
129 1 0.00
130 18 0.04
131 4 0.01
133 28 0.07
134 31 0.07
135 6 0.01
136 16 0.04
137 163 0.38
138 130 0.30
139 9 0.02
143 6 0.01
144 17 0.04
145 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.39
Consensus pattern (133 bp):
ATTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTT
GAGACAGTTTCCCTTGAAACAAAATCTTTGAATCAGTTTCCCTTGAAACAAATTTCTCCCTTGAA
TCA
Found at i:5198571 original size:21 final size:20
Alignment explanation
Indices: 5198546--5198608 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 20
5198536 TGAGACAGTT
5198546 TCTCTTAAAACAAATTTTATC
1 TCTCTTAAAACAAATTTT-TC
*
5198567 TCTCTTAAGAC--A--TTT-
1 TCTCTTAAAACAAATTTTTC
5198582 TCTCTTAAAACAAATTTTTTC
1 TCTCTTAAAACAAA-TTTTTC
5198603 TCTCTT
1 TCTCTT
5198609 GAGACAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 10 0.29
16 1 0.03
17 3 0.09
19 1 0.03
20 3 0.09
21 16 0.47
ACGTcount: A:0.30, C:0.21, G:0.02, T:0.48
Consensus pattern (20 bp):
TCTCTTAAAACAAATTTTTC
Found at i:5198572 original size:173 final size:174
Alignment explanation
Indices: 5198384--5198774 Score: 563
Period size: 173 Copynumber: 2.2 Consensus size: 174
5198374 CCATTGAAAT
5198384 AAATTTTGTCTCTCTTGAGACAGTTTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
1 AAATTTTGTCTCTCTTGAGACAGTTTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
* * * * *
5198449 TTGAAACAAAATCTTTGAATCTGTTTTCCTTGAAACAAA-TTTCGTCTCCCTTGAGACAATTTC-
66 TTGAAAAAAAAACATTGAATCTATTATCCTTGAAACAAAGTTTCGTCTCCCTTGAGACAATTTCT
* * * *
5198512 CTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAAC
131 CTTAAAACAAA-TTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
* * *
5198557 AAATTTTATCTCTCTTAAGACA-TTTTCTCTTAAAACAAATTTTTTCTCTCTTGAGACAGTTTCC
1 AAATTTTGTCTCTCTTGAGACAGTTTTC-CTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCC
* * *
5198621 CTTGAAAAAAAAACATTGAATTTATTATCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTTC
65 CTTGAAAAAAAAACATTGAATCTATTATCCTTGAAACAAAGTTTCGTCTCCCTTGAGACAATTTC
5198686 TCTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
130 TCTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
* * * *
5198731 AAATTTTGTTTCTCTTGAGACAGTTTCCCGTGAAACAAAATTTT
1 AAATTTTGTCTCTCTTGAGACAGTTTTCCTTAAAAC-AAATTTT
5198775 TGAATCTGTT
Statistics
Matches: 192, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
172 5 0.03
173 89 0.46
174 77 0.40
175 21 0.11
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (174 bp):
AAATTTTGTCTCTCTTGAGACAGTTTTCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
TTGAAAAAAAAACATTGAATCTATTATCCTTGAAACAAAGTTTCGTCTCCCTTGAGACAATTTCT
CTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
Found at i:5198578 original size:36 final size:36
Alignment explanation
Indices: 5198473--5198628 Score: 190
Period size: 36 Copynumber: 4.3 Consensus size: 36
5198463 TTGAATCTGT
* * * *
5198473 TTTC-CTTGAAACAAATTTCGTCTCCCTTGAGACAA
1 TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAG
*
5198508 TTTC-CTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
1 TTTCTCTTAAAACAAA-TTTTGTCTCTCTTGAGACAG
* * *
5198544 TTTCTCTTAAAACAAATTTTATCTCTCTTAAGACAT
1 TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAG
*
5198580 TTTCTCTTAAAACAAATTTTTTCTCTCTTGAGACAG
1 TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAG
*
5198616 TTTCCCTTGAAAA
1 TTTCTCTT-AAAA
5198629 AAAAACATTG
Statistics
Matches: 107, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
35 15 0.14
36 78 0.73
37 14 0.13
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (36 bp):
TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:5198601 original size:19 final size:19
Alignment explanation
Indices: 5198544--5198605 Score: 69
Period size: 15 Copynumber: 3.4 Consensus size: 19
5198534 CTTGAGACAG
5198544 TTTCTCTTAAAACAAATTT
1 TTTCTCTTAAAACAAATTT
*
5198563 TATCTCTCTTAAGAC--A--T
1 T-T-TCTCTTAAAACAAATTT
5198580 TTTCTCTTAAAACAAATTT
1 TTTCTCTTAAAACAAATTT
5198599 TTTCTCT
1 TTTCTCT
5198606 CTTGAGACAG
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
15 10 0.29
16 1 0.03
17 3 0.09
19 10 0.29
20 1 0.03
21 10 0.29
ACGTcount: A:0.31, C:0.19, G:0.02, T:0.48
Consensus pattern (19 bp):
TTTCTCTTAAAACAAATTT
Found at i:5198769 original size:36 final size:36
Alignment explanation
Indices: 5198654--5198757 Score: 163
Period size: 36 Copynumber: 2.9 Consensus size: 36
5198644 ATTATCCTTG
5198654 AAACAAAGTTTTGTCTCTCTTGAGACAATTTCTCTTA
1 AAACAAA-TTTTGTCTCTCTTGAGACAATTTCTCTTA
* *
5198691 AAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTA
1 AAACAAATTTTGTCTCTCTTGAGACAATTTCTCTTA
* *
5198727 AAACAAATTTTGTTTCTCTTGAGACAGTTTC
1 AAACAAATTTTGTCTCTCTTGAGACAATTTC
5198758 CCGTGAAACA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
36 54 0.89
37 7 0.11
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAATTTCTCTTA
Found at i:5198866 original size:101 final size:102
Alignment explanation
Indices: 5198682--5198963 Score: 417
Period size: 101 Copynumber: 2.8 Consensus size: 102
5198672 CTTGAGACAA
* * *
5198682 TTTCTCTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAACAAATTTTGTTTCTCTT
1 TTTC-CTTAAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTAAAACAAATTTTGTCTCTCTT
* * *
5198747 GAGACA-GTTTCCCGTGAAACAAAATTTTTGAATCTGT
65 GAGACATGTTTCCCTTGAAACAAAATCTTTAAATCTGT
* * **
5198784 TTTCCTTAAAACAAATTTCATGTCCCTTGAGACAGTTAATTTTAAAACAAATTTTGTCTCTCTTG
1 TTTCCTTAAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTAAAACAAATTTTGTCTCTCTTG
*
5198849 AGA-ATGTTTCCCTTGAAACGAAATCTTTAAATCTGT
66 AGACATGTTTCCCTTGAAACAAAATCTTTAAATCTGT
* *
5198885 TTTCCTTGAAATAAATTTCGTCTCCCTTGAGACAGTTTCTTTTAAAACAAATTTTGTCTCTCTTG
1 TTTCCTTAAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTAAAACAAATTTTGTCTCTCTTG
5198950 AGACAT-TTTCCCTT
66 AGACATGTTTCCCTT
5198964 AAAAATTTGT
Statistics
Matches: 161, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
100 1 0.01
101 154 0.96
102 6 0.04
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.41
Consensus pattern (102 bp):
TTTCCTTAAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTAAAACAAATTTTGTCTCTCTTG
AGACATGTTTCCCTTGAAACAAAATCTTTAAATCTGT
Found at i:5198944 original size:36 final size:33
Alignment explanation
Indices: 5198897--5198991 Score: 102
Period size: 36 Copynumber: 2.8 Consensus size: 33
5198887 TCCTTGAAAT
* * **
5198897 AAATTTCGTCTCCCTTGAGACAGTTTCTTTTAAAA
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTT--AA
*
5198932 CAAATTTTGTCTCTCTTGAGACATTTTCCCTTAA
1 -AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAA
*
5198966 AAA-TTTGTCTCTCTGGAGACAGTTTC
1 AAATTTTGTCTCTCTTGAGACAGTTTC
5198992 ACTTGGAACA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
32 21 0.40
33 3 0.06
34 2 0.04
36 26 0.50
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (33 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAA
Found at i:5199044 original size:29 final size:30
Alignment explanation
Indices: 5198985--5199044 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
5198975 TCTCTGGAGA
5198985 CAGTTTCACTTGGAACAAAAATCTTTGAAT
1 CAGTTTCACTTGGAACAAAAATCTTTGAAT
* *
5199015 CAGTTTCCCTT-GAAGC-AAAATCTTTTAAT
1 CAGTTTCACTTGGAA-CAAAAATCTTTGAAT
5199044 C
1 C
5199045 TATTTTCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (30 bp):
CAGTTTCACTTGGAACAAAAATCTTTGAAT
Found at i:5199174 original size:36 final size:36
Alignment explanation
Indices: 5199127--5199196 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
5199117 TTTTGATACT
*
5199127 AAGTTTTGTCTCTCTTGAGATAATTTCCCTTAAAAA
1 AAGTTTTGTCTCTCTTGAGACAATTTCCCTTAAAAA
* * *
5199163 AAGTTTTGTCTCTTTTGAGACAGTTTCTCTTAAA
1 AAGTTTTGTCTCTCTTGAGACAATTTCCCTTAAA
5199197 GCACCAATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (36 bp):
AAGTTTTGTCTCTCTTGAGACAATTTCCCTTAAAAA
Found at i:5201445 original size:16 final size:18
Alignment explanation
Indices: 5201410--5201446 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
5201400 TTATACAATC
5201410 AATATTTATCGTATTTAA
1 AATATTTATCGTATTTAA
*
5201428 AATA-TTATCTTA-TTAA
1 AATATTTATCGTATTTAA
5201444 AAT
1 AAT
5201447 TTCGATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 7 0.39
18 4 0.22
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (18 bp):
AATATTTATCGTATTTAA
Found at i:5205594 original size:36 final size:36
Alignment explanation
Indices: 5205547--5205631 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 36
5205537 ATTGAAAACA
* *
5205547 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAG
* *
5205583 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAA-TAAATTTTGTCTCTCTTGAGACAG
*
5205620 TTTCTCTTGAAA
1 TTTCCCTTGAAA
5205632 CATAAACATT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 12 0.28
37 31 0.72
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (36 bp):
TTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAG
Found at i:5205636 original size:102 final size:102
Alignment explanation
Indices: 5205460--5205909 Score: 480
Period size: 102 Copynumber: 4.4 Consensus size: 102
5205450 TAAAAAGAAG
* * * * * * *
5205460 ATTTTATCTCGCTTGAGATAGTTTCCTTTTAAACAAAATTTTGTCTCACTTGAGACAATTTCTCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
*
5205525 TGAAACATAAATATTGAAAACATTTCCCTTGAAATGA
66 TGAAACATAAATATTGAAAACATTTCCCTTGAAATAA
* *
5205562 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
* * *
5205627 TGAAACATAAACATTGAAACCATTTCCATTGAAATAA
66 TGAAACATAAATATTGAAAACATTTCCCTTGAAATAA
* *
5205664 ATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
* * * * *
5205728 TGAAAC--AAATCTTTG-AATCTGTTTTCCTTGAAACAA
66 TGAAACATAAAT-ATTGAAAAC-ATTTCCCTTGAAATAA
* * * *
5205764 ATTTCGTCTCCCTTGAGACAATTT-CCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
* * * * * * *
5205828 TAAAACA-AATTTTATCTCTCTTAAGACATTTTCTCTTAAAACAA
66 TGAAACATAA----A--TAT-TGAAAACA-TTTCCCTTGAAATAA
*
5205872 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAAAAAA
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAA
5205910 AACTTTGAAT
Statistics
Matches: 293, Mismatches: 41, Indels: 21
0.83 0.12 0.06
Matches are distributed among these distances:
99 14 0.05
100 69 0.24
101 36 0.12
102 124 0.42
105 1 0.00
106 1 0.00
107 2 0.01
108 35 0.12
109 11 0.04
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (102 bp):
ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
TGAAACATAAATATTGAAAACATTTCCCTTGAAATAA
Found at i:5205702 original size:36 final size:36
Alignment explanation
Indices: 5205662--5205742 Score: 144
Period size: 36 Copynumber: 2.2 Consensus size: 36
5205652 CCATTGAAAT
5205662 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
*
5205698 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
5205734 AAATCTTTG
1 AAAT-TTTG
5205743 AATCTGTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
36 39 0.91
37 4 0.09
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40
Consensus pattern (36 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
Found at i:5205816 original size:36 final size:35
Alignment explanation
Indices: 5205750--5206052 Score: 271
Period size: 36 Copynumber: 8.5 Consensus size: 35
5205740 TTGAATCTGT
* * *
5205750 TTTCCTTGAAACAAATTTCGTCTCCCTTGAGACAA
1 TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
5205785 TTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
1 TTTCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAG
* * * *
5205821 TTTCTCTTAAAACAAATTTTATCTCTCTTAAGACAT
1 TTTC-CTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
5205857 TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAG
1 TTTC-CTTGAAACAAATTTTGTCTCTCTTGAGACAG
**** *
5205893 TTTCCCTTGAAA-AAA----AAAACT-TTGA-ATTTA-
1 TTT-CCTTGAAACAAATTTTGTCTCTCTTGAGA--CAG
5205923 TTATCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAG
1 TT-TCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAG
* * * *
5205960 TTTCTCTTAAAACAAATTTCGTCTCCCTTGAGACAA
1 TTTC-CTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
5205996 TTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAG
1 TTTC-CTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
5206032 TTTCCCGTGAAACAAAATTTT
1 TTT-CCTTGAAAC-AAATTTT
5206053 TGAATCTGTT
Statistics
Matches: 220, Mismatches: 30, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
29 1 0.00
30 14 0.06
31 7 0.03
35 18 0.08
36 144 0.65
37 35 0.16
38 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (35 bp):
TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:5205848 original size:21 final size:20
Alignment explanation
Indices: 5205823--5205885 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 20
5205813 TGAGACAGTT
5205823 TCTCTTAAAACAAATTTTATC
1 TCTCTTAAAACAAATTTT-TC
*
5205844 TCTCTTAAGAC--A--TTT-
1 TCTCTTAAAACAAATTTTTC
5205859 TCTCTTAAAACAAATTTTGTC
1 TCTCTTAAAACAAATTTT-TC
5205880 TCTCTT
1 TCTCTT
5205886 GAGACAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 10 0.29
16 1 0.03
17 3 0.09
19 3 0.09
20 1 0.03
21 16 0.47
ACGTcount: A:0.30, C:0.21, G:0.03, T:0.46
Consensus pattern (20 bp):
TCTCTTAAAACAAATTTTTC
Found at i:5205875 original size:17 final size:17
Alignment explanation
Indices: 5205821--5205876 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 17
5205811 CTTGAGACAG
5205821 TTTCTCTTAAAACAAATTT
1 TTTCTCTTAAAACAAA--T
*
5205840 TATCTCTCTTAAGAC--AT
1 T-T-TCTCTTAAAACAAAT
5205857 TTTCTCTTAAAACAAAT
1 TTTCTCTTAAAACAAAT
5205874 TTT
1 TTT
5205877 GTCTCTCTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
15 10 0.32
16 1 0.03
17 7 0.23
19 2 0.06
20 1 0.03
21 10 0.32
ACGTcount: A:0.34, C:0.18, G:0.02, T:0.46
Consensus pattern (17 bp):
TTTCTCTTAAAACAAAT
Found at i:5205961 original size:139 final size:136
Alignment explanation
Indices: 5205561--5206150 Score: 576
Period size: 139 Copynumber: 4.3 Consensus size: 136
5205551 CCTTGAAATG
* * * *
5205561 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTC
1 AATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCC
* * * * * * *
5205626 TTGAAACATAAACATTGAAACCATTTCCATTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCC
65 TTGAAAAAAAAACTTTGAATCTATTTCC-TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTC
5205691 TTAAAACA
129 TTAAAACA
* * *
5205699 AATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA-------TCT-TTGA-ATCTGTTTTCC
1 AATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGA-CAGTTTCCC
*** *
5205755 TTGAAACAAATTTCGTCTCCCTTGAGA-CAATTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGAC
65 TTGAAA-AAA---AAACT---TTGA-ATCTATTTCCTTGAAACAAA-TTTTGTCTCTCTTGAGAC
5205819 AGTTTCTCTTAAAACA
121 AGTTTCTCTTAAAACA
* * * *
5205835 AATTTTATCTCTCTTAAGACATTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCT
1 AATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCT
*
5205900 TGAAAAAAAAAACTTTGAATTTATTATCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCT
66 TG-AAAAAAAAACTTTGAATCTATT-TCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCT
5205965 CTTAAAACA
128 CTTAAAACA
* * * * *
5205974 AATTTCGTCTCCCTTGAGACAATTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCG
1 AATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCT
* ** * * **
5206039 TGAAACAAAATTTTTGAATCTGTTTTCCTTAAAACAAATTTCATGTC-C-CTTGAGACAGTTAAT
66 TGAAAAAAAAACTTTGAATCT-ATTTCCTTGAAACAAATTT--TGTCTCTCTTGAGACAGTTTCT
*
5206102 TTTAAAACA
128 CTTAAAACA
*
5206111 AATTTTGTCTCTCTTGAGA-ATGTTTCCCTTGAAACGAAAT
1 AATTTTGTCTCTCTTGAGACA-GTTTCCCTTAAAAC-AAAT
5206151 CTTTAAATCT
Statistics
Matches: 379, Mismatches: 46, Indels: 54
0.79 0.10 0.11
Matches are distributed among these distances:
128 1 0.00
129 16 0.04
130 3 0.01
133 1 0.00
135 9 0.02
136 78 0.21
137 57 0.15
138 73 0.19
139 115 0.30
141 2 0.01
143 3 0.01
144 17 0.04
145 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (136 bp):
AATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCT
TGAAAAAAAAACTTTGAATCTATTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTT
AAAACA
Found at i:5206093 original size:101 final size:101
Alignment explanation
Indices: 5205466--5206241 Score: 593
Period size: 101 Copynumber: 7.6 Consensus size: 101
5205456 GAAGATTTTA
* * * * * * *
5205466 TCTCGCTTGAGATAGTTTCCTTTTAAACAAAATTTTGTCTCACTTGAGACAATTTCTCTTGAAAC
1 TCTCCCTTGAGACAGTTTCCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
* * * * * ** *
5205531 ATAAAT-ATTGAAAAC-ATTTCCCTTGAAATGAATTTTG
65 A-AAATCTTTG-AATCTGTTTTCCTTAAAACAAATTTCG
* * * * *
5205568 TCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC
1 TCTCCCTTGAGACAGTTTCCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
* * ** * * *
5205633 ATAAA-CATTGAAAC-CATTTCCATTGAAATAAATTTTG
65 A-AAATCTTTGAATCTGTTTTCC-TTAAAACAAATTTCG
*
5205670 TCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-
1 TCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
*
5205734 AAATCTTTGAATCTGTTTTCCTTGAAACAAATTTCG
66 AAATCTTTGAATCTGTTTTCCTTAAAACAAATTTCG
* * * *
5205770 TCTCCCTTGAGACAATTT-CCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAAC
1 TCTCCCTTGAGACAGTTTCCCTTAAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
* * * *
5205834 AAATTTTATCTCTCTTAAGAC-ATTTTCTCTTAAAACAAATTTTG
65 AAA----ATCT-T-TGAA-TCTGTTTTC-CTTAAAACAAATTTCG
* *** *
5205878 TCTCTCTTGAGACAGTTTCCCTTGAAAA-AAA-----AAACT-TTGA-ATTTA-TTAT-CCTTGA
1 TCTCCCTTGAGACAGTTTCCCTT-AAAACAAATTTTGTCTCTCTTGAGA--CAGTT-TCCCTTGA
* *
5205933 AACAAAGTTTTGTCTCTCTTGAGA-CAGTTTCT-CTTAAAACAAATTTCG
62 AACAAA-------ATCT-TTGA-ATCTGTTT-TCCTTAAAACAAATTTCG
* * *
5205981 TCTCCCTTGAGACAATTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCGTGAAACA
1 TCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
* *
5206046 AAATTTTTGAATCTGTTTTCCTTAAAACAAATTTCA
66 AAATCTTTGAATCTGTTTTCCTTAAAACAAATTTCG
* ****
5206082 TGTCCCTTGAGACAGTTAATTTTAAAACAAATTTTGTCTCTCTTGAGA-ATGTTTCCCTTGAAAC
1 TCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA-GTTTCCCTTGAAAC
* * * *
5206146 GAAATCTTTAAATCTGTTTTCCTTGAAATAAATTTCG
65 AAAATCTTTGAATCTGTTTTCCTTAAAACAAATTTCG
** *
5206183 TCTCCCTTGAGACAGTTTCTTTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCCCTT
1 TCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
5206242 AAAATTTTGT
Statistics
Matches: 564, Mismatches: 71, Indels: 79
0.79 0.10 0.11
Matches are distributed among these distances:
99 14 0.02
100 70 0.12
101 214 0.38
102 132 0.23
103 43 0.08
104 5 0.01
105 14 0.02
106 1 0.00
107 8 0.01
108 35 0.06
109 24 0.04
110 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (101 bp):
TCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
AAATCTTTGAATCTGTTTTCCTTAAAACAAATTTCG
Found at i:5206222 original size:36 final size:32
Alignment explanation
Indices: 5206175--5206269 Score: 100
Period size: 36 Copynumber: 2.8 Consensus size: 32
5206165 TCCTTGAAAT
* * **
5206175 AAATTTCGTCTCCCTTGAGACAGTTTCTTTTAAAA
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTT---A
*
5206210 CAAATTTTGTCTCTCTTGAGACATTTTCCCTTA
1 -AAATTTTGTCTCTCTTGAGACAGTTTCCCTTA
*
5206243 AAATTTTGTCTCTCTGGAGACAGTTTC
1 AAATTTTGTCTCTCTTGAGACAGTTTC
5206270 ACTTGGAACA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
32 25 0.48
33 1 0.02
36 26 0.50
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (32 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCCCTTA
Found at i:5206322 original size:29 final size:30
Alignment explanation
Indices: 5206263--5206322 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
5206253 TCTCTGGAGA
5206263 CAGTTTCACTTGGAACAAAAATCTTTGAAT
1 CAGTTTCACTTGGAACAAAAATCTTTGAAT
* *
5206293 CAGTTTCCCTT-GAAGC-AAAATCTTTTAAT
1 CAGTTTCACTTGGAA-CAAAAATCTTTGAAT
5206322 C
1 C
5206323 TATTTTCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (30 bp):
CAGTTTCACTTGGAACAAAAATCTTTGAAT
Found at i:5206447 original size:37 final size:37
Alignment explanation
Indices: 5206406--5206476 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
5206396 TTTTGATACT
*
5206406 AAGTTTTGTCTCTCTTGAGATAATTTCCCTTAAAATA
1 AAGTTTTGTCTCTCTTGAGACAATTTCCCTTAAAATA
* * *
5206443 AAGTTTTGTCTCTTTTGAGACAGTTTCTCTTAAA
1 AAGTTTTGTCTCTCTTGAGACAATTTCCCTTAAA
5206477 GCACCAATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (37 bp):
AAGTTTTGTCTCTCTTGAGACAATTTCCCTTAAAATA
Found at i:5208735 original size:16 final size:18
Alignment explanation
Indices: 5208700--5208736 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
5208690 TTATACAATC
5208700 AATATTTATCGTATTTAA
1 AATATTTATCGTATTTAA
*
5208718 AATA-TTATCTTA-TTAA
1 AATATTTATCGTATTTAA
5208734 AAT
1 AAT
5208737 TTCGATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 7 0.39
18 4 0.22
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (18 bp):
AATATTTATCGTATTTAA
Found at i:5212882 original size:36 final size:36
Alignment explanation
Indices: 5212835--5212919 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 36
5212825 ATTGAAAACA
* *
5212835 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAG
* *
5212871 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAA-TAAATTTTGTCTCTCTTGAGACAG
*
5212908 TTTCTCTTGAAA
1 TTTCCCTTGAAA
5212920 CATAAACATT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 12 0.28
37 31 0.72
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (36 bp):
TTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAG
Found at i:5212924 original size:102 final size:102
Alignment explanation
Indices: 5212748--5213198 Score: 489
Period size: 102 Copynumber: 4.4 Consensus size: 102
5212738 TAAAAAGAAG
* * * * * * *
5212748 ATTTTATCTCGCTTGAGATAGTTTCCTTTTAAACAAAATTTTGTCTCACTTGAGACAATTTCTCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
*
5212813 TGAAACATAAATATTGAAAACATTTCCCTTGAAATGA
66 TGAAACATAAATATTGAAAACATTTCCCTTGAAATAA
* *
5212850 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
* * *
5212915 TGAAACATAAACATTGAAACCATTTCCATTGAAATAA
66 TGAAACATAAATATTGAAAACATTTCCCTTGAAATAA
* *
5212952 ATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
* * * * *
5213016 TGAAACA-AAATCTTTG-AATCTGTTTTCCTTGAAACAA
66 TGAAACATAAAT-ATTGAAAAC-ATTTCCCTTGAAATAA
* * * *
5213053 ATTTCGTCTCCCTTGAGACAATTT-CCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCT
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
* * * * * * *
5213117 TAAAACA-AATTTTATCTCTCTTAAGACATTTTCTCTTAAAACAA
66 TGAAACATAA----A--TAT-TGAAAACA-TTTCCCTTGAAATAA
*
5213161 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAAAAAA
1 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAA
5213199 ACTTTGAATT
Statistics
Matches: 295, Mismatches: 41, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
100 14 0.05
101 107 0.36
102 124 0.42
105 1 0.00
106 1 0.00
107 2 0.01
108 35 0.12
109 11 0.04
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.39
Consensus pattern (102 bp):
ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAGTTTCTCT
TGAAACATAAATATTGAAAACATTTCCCTTGAAATAA
Found at i:5212990 original size:36 final size:36
Alignment explanation
Indices: 5212950--5213024 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
5212940 CCATTGAAAT
5212950 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
*
5212986 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
5213022 AAA
1 AAA
5213025 ATCTTTGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (36 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC
Found at i:5213055 original size:101 final size:100
Alignment explanation
Indices: 5212748--5213529 Score: 613
Period size: 101 Copynumber: 7.7 Consensus size: 100
5212738 TAAAAAGAAG
* * * * * * * *
5212748 ATTTTATCTCGCTTGAGATAGTTTCCTTTTAAACAAAATTTTGTCTCACTTGAGACAATTTCTCT
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCT
* * * **
5212813 TGAAACATAAAT-ATTGAAAACATTTCCCTTGAAATGA
65 TGAAACA-AAATCTTTG-AAACGTTTTCCTTGAAACAA
* * * * *
5212850 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCT
* ** *
5212915 TGAAACATAAA-CATTGAAACCATTTCCATTGAAATAA
65 TGAAACA-AAATCTTTGAAACGTTTTCC-TTGAAACAA
*
5212952 ATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
*
5213017 GAAACAAAATCTTTGAATCTGTTTTCCTTGAAACAA
66 GAAACAAAATCTTTGAAAC-GTTTTCCTTGAAACAA
* * * *
5213053 ATTTCGTCTCCCTTGAGACAATTT-CCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCT
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCT
* * * *
5213117 TAAAACAAATTTTATCTCTCTTAAGACATTTTCTCTTAAAACAA
65 TGAAACAAA----ATCT-T-TGAA-ACGTTTTC-CTTGAAACAA
* * * **
5213161 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAAAAAAACTTTG--AAT-TT-----A-TTAT-C
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTT--AAAACAAATTTTGTCTCTCTTGAGACAGTT-TCC
* * *
5213216 CTTGAAACAAAGTTTTGTCTCTCTTGAGACAG-TTTCTCTTAAAACAA
63 CTTGAAACAAA-------ATCT-TTGAAAC-GTTTTC-CTTGAAACAA
* * * *
5213263 ATTTCGTCTCCCTTGAGACAATTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCGT
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
* * *
5213328 GAAACAAAATTTTTGAATCTGTTTTCCTTAAAACAA
66 GAAACAAAATCTTTGAAAC-GTTTTCCTTGAAACAA
** * ****
5213364 ATTTCATGTCCCTTGAGACAGTTAATTTTAAAACAAATTTTGTCTCTCTTGAGA-ATGTTTCCCT
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA-GTTTCCCT
* * * *
5213428 TGAAACGAAATCTTTAAATATGTTTTCCTTGAAATAA
65 TGAAACAAAATCTTTGAA-ACGTTTTCCTTGAAACAA
* ** *
5213465 ATTTCGTCTCCCTTGAGACAGTTTCTTTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCCCTT
1 ATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
5213530 AAAATTTTGT
Statistics
Matches: 568, Mismatches: 77, Indels: 71
0.79 0.11 0.10
Matches are distributed among these distances:
100 26 0.05
101 283 0.50
102 171 0.30
103 4 0.01
104 8 0.01
105 4 0.01
106 1 0.00
107 10 0.02
108 34 0.06
109 17 0.03
110 4 0.01
111 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (100 bp):
ATTTTGTCTCCCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTT
GAAACAAAATCTTTGAAACGTTTTCCTTGAAACAA
Found at i:5213108 original size:36 final size:35
Alignment explanation
Indices: 5212937--5213024 Score: 131
Period size: 36 Copynumber: 2.4 Consensus size: 35
5212927 ATTGAAACCA
*
5212937 TTTCCATTGAAATAAATTTTGTCTCTCTTGAGACAG
1 TTTCC-TTGAAACAAATTTTGTCTCTCTTGAGACAG
*
5212973 TTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAG
1 TTT-CCTTGAAACAAATTTTGTCTCTCTTGAGACAG
5213009 TTTCCCTTGAAACAAA
1 TTT-CCTTGAAACAAA
5213025 ATCTTTGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
36 46 0.96
37 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (35 bp):
TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:5213123 original size:137 final size:132
Alignment explanation
Indices: 5212936--5213675 Score: 506
Period size: 137 Copynumber: 5.5 Consensus size: 132
5212926 CATTGAAACC
* *
5212936 ATTTCCATTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCT
1 ATTTCC-TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCT
* *
5213001 TGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCTGTTTTCCTTGAAACAAATTTCGTCTCCCT
65 TGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCAGTTTCCCTTGAAACAAA-TTCGTCT---T
5213066 TGAGA-CA
126 TGA-ATCA
*
5213073 ATTTCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTATCTCTCT
1 ATTTCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCT
* * * * * **
5213138 TAAGACATTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGA-CAGTTTCCCTTGAAA-AAA--AA
65 TGAGACAGTTTCCCTTGAAACAAA------ATCT-TTGA-ATCAGTTTCCCTTGAAACAAATTCG
* **
5213199 ACTTTGAATTT
122 TCTTTGAATCA
* *
5213210 ATTATCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTCGTCTCCC
1 ATT-TCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTC
* * * * * *
5213275 TTGAGACAATTTCTCTTAAAACAAATTTTGTCTCTCTTGAGA-CAGTTTCCCGTGAAACAAAAT-
64 TTGAGACAGTTTCCCTTGAAACAAA------ATCT-TTGA-ATCAGTTTCCCTTGAAACAAATTC
*
5213338 -T-TTTGAATCTG
121 GTCTTTGAATC-A
* * ** *
5213349 TTTTCCTTAAAACAAATTTCATGTC-C-CTTGAGACAGTTAATTTTAAAACAAATTTTGTCTCTC
1 ATTTCCTTGAAACAAATTT--TGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTC
* * * *
5213412 TTGAGA-ATGTTTCCCTTGAAACGAAATCTTTAAAT-ATGTTTTCCTTGAAATAAATTTCGTCTC
64 TTGAGACA-GTTTCCCTTGAAACAAAATCTTTGAATCA-GTTTCCCTTGAAACAAA-TTCGTCT-
5213475 CCTTGAGA-CA
125 --TTGA-ATCA
* * * * *
5213485 GTTTCTTTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCCCTT---A-AAATTTTGTCTCTCT
1 ATTTC-CTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCT
* * * * *
5213546 GGAGACAGTTTCACTTGGAACAAAAATCTTTGAATCAGTTTCCCTTGAAGCAAAATC-T-TTT-A
65 TGAGACAGTTTCCCTTGAAAC-AAAATCTTTGAATCAGTTTCCCTTGAAACAAATTCGTCTTTGA
5213608 ATCTA
129 ATC-A
* * * * ** *
5213613 TTTTCCTT-AAA-AAA-ATCGTCTCTCTCGAGACAGTTTCTCTT-GGA-AAATTTTGTCTCCCTT
1 ATTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTT
5213673 GAG
66 GAG
5213676 GTATTTTCTT
Statistics
Matches: 498, Mismatches: 67, Indels: 87
0.76 0.10 0.13
Matches are distributed among these distances:
124 22 0.04
125 3 0.01
126 22 0.04
127 4 0.01
128 7 0.01
129 2 0.00
130 17 0.03
131 5 0.01
132 1 0.00
133 34 0.07
134 28 0.06
135 5 0.01
136 16 0.03
137 164 0.33
138 133 0.27
139 9 0.02
140 2 0.00
143 6 0.01
144 17 0.03
145 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (132 bp):
ATTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACAAATTTTGTCTCTCTT
GAGACAGTTTCCCTTGAAACAAAATCTTTGAATCAGTTTCCCTTGAAACAAATTCGTCTTTGAAT
CA
Found at i:5213137 original size:21 final size:20
Alignment explanation
Indices: 5213112--5213174 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 20
5213102 TGAGACAGTT
5213112 TCTCTTAAAACAAATTTTATC
1 TCTCTTAAAACAAATTTT-TC
*
5213133 TCTCTTAAGAC--A--TTT-
1 TCTCTTAAAACAAATTTTTC
5213148 TCTCTTAAAACAAATTTTGTC
1 TCTCTTAAAACAAATTTT-TC
5213169 TCTCTT
1 TCTCTT
5213175 GAGACAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 10 0.29
16 1 0.03
17 3 0.09
19 3 0.09
20 1 0.03
21 16 0.47
ACGTcount: A:0.30, C:0.21, G:0.03, T:0.46
Consensus pattern (20 bp):
TCTCTTAAAACAAATTTTTC
Found at i:5213138 original size:173 final size:174
Alignment explanation
Indices: 5212950--5213340 Score: 588
Period size: 173 Copynumber: 2.2 Consensus size: 174
5212940 CCATTGAAAT
5212950 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
* * * *
5213015 TTGAAACAAAATCTTTGAATCTGTTTTCCTTGAAACAAA-TTTCGTCTCCCTTGAGACAATTTC-
66 TTGAAAAAAAAACTTTGAATCTATTATCCTTGAAACAAAGTTTCGTCTCCCTTGAGACAATTTCT
* * * *
5213078 CTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTAAAAC
131 CTTAAAACAAA-TTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
* * * *
5213123 AAATTTTATCTCTCTTAAGACATTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
* * * *
5213188 TTGAAAAAAAAACTTTGAATTTATTATCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCT
66 TTGAAAAAAAAACTTTGAATCTATTATCCTTGAAACAAAGTTTCGTCTCCCTTGAGACAATTTCT
5213253 CTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
131 CTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
* *
5213297 AAATTTTGTCTCTCTTGAGACAGTTTCCCGTGAAACAAAATTTT
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAAC-AAATTTT
5213341 TGAATCTGTT
Statistics
Matches: 193, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
173 95 0.49
174 81 0.42
175 17 0.09
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (174 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACAGTTTCCC
TTGAAAAAAAAACTTTGAATCTATTATCCTTGAAACAAAGTTTCGTCTCCCTTGAGACAATTTCT
CTTAAAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTAAAAC
Found at i:5213144 original size:36 final size:36
Alignment explanation
Indices: 5213037--5213194 Score: 192
Period size: 36 Copynumber: 4.4 Consensus size: 36
5213027 CTTTGAATCT
* * * *
5213037 GTTTTCCTTGAAACAAATTTCGTCTCCCTTGAGACA
1 GTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA
* *
5213073 ATTT-CCTTGAAACAAAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTAAAACAAA-TTTTGTCTCTCTTGAGACA
* * *
5213109 GTTTCTCTTAAAACAAATTTTATCTCTCTTAAGACA
1 GTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA
* *
5213145 TTTTCTCTTAAAACAAATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA
5213181 GTTTCCCTTGAAAA
1 GTTTCCCTT-AAAA
5213195 AAAAACTTTG
Statistics
Matches: 106, Mismatches: 13, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
35 12 0.11
36 80 0.75
37 14 0.13
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (36 bp):
GTTTCCCTTAAAACAAATTTTGTCTCTCTTGAGACA
Found at i:5213164 original size:17 final size:17
Alignment explanation
Indices: 5213110--5213165 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 17
5213100 CTTGAGACAG
5213110 TTTCTCTTAAAACAAATTT
1 TTTCTCTTAAAACAAA--T
*
5213129 TATCTCTCTTAAGAC--AT
1 T-T-TCTCTTAAAACAAAT
5213146 TTTCTCTTAAAACAAAT
1 TTTCTCTTAAAACAAAT
5213163 TTT
1 TTT
5213166 GTCTCTCTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
15 10 0.32
16 1 0.03
17 7 0.23
19 2 0.06
20 1 0.03
21 10 0.32
ACGTcount: A:0.34, C:0.18, G:0.02, T:0.46
Consensus pattern (17 bp):
TTTCTCTTAAAACAAAT
Found at i:5213278 original size:36 final size:36
Alignment explanation
Indices: 5213220--5213417 Score: 175
Period size: 36 Copynumber: 5.7 Consensus size: 36
5213210 ATTATCCTTG
5213220 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTA
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTA
* * *
5213257 AAACAAATTTCGTCTCCCTTGAGACAATTTCTCTTA
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTA
* * *
5213293 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCGTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTA
* *
5213329 AAACAAA----AT-T-T-TTGA-ATCTGTTT-TCCTTA
1 AAACAAATTTTGTCTCTCTTGAGA-CAGTTTCT-CTTA
** *
5213358 AAACAAATTTCATGTC-C-CTTGAGACAGTTAATTTTA
1 AAACAAATTT--TGTCTCTCTTGAGACAGTTTCTCTTA
5213394 AAACAAATTTTGTCTCTCTTGAGA
1 AAACAAATTTTGTCTCTCTTGAGA
5213418 ATGTTTCCCT
Statistics
Matches: 128, Mismatches: 18, Indels: 31
0.72 0.10 0.18
Matches are distributed among these distances:
28 1 0.01
29 18 0.14
30 1 0.01
31 1 0.01
32 1 0.01
34 4 0.03
35 2 0.02
36 91 0.71
37 9 0.07
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTA
Found at i:5213510 original size:36 final size:32
Alignment explanation
Indices: 5213463--5213557 Score: 100
Period size: 36 Copynumber: 2.8 Consensus size: 32
5213453 TCCTTGAAAT
* * **
5213463 AAATTTCGTCTCCCTTGAGACAGTTTCTTTTAAAA
1 AAATTTTGTCTCTCTTGAGACAGTTTCCCTT---A
*
5213498 CAAATTTTGTCTCTCTTGAGACATTTTCCCTTA
1 -AAATTTTGTCTCTCTTGAGACAGTTTCCCTTA
*
5213531 AAATTTTGTCTCTCTGGAGACAGTTTC
1 AAATTTTGTCTCTCTTGAGACAGTTTC
5213558 ACTTGGAACA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
32 25 0.48
33 1 0.02
36 26 0.50
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (32 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCCCTTA
Found at i:5213610 original size:29 final size:30
Alignment explanation
Indices: 5213551--5213610 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
5213541 TCTCTGGAGA
5213551 CAGTTTCACTTGGAACAAAAATCTTTGAAT
1 CAGTTTCACTTGGAACAAAAATCTTTGAAT
* *
5213581 CAGTTTCCCTT-GAAGC-AAAATCTTTTAAT
1 CAGTTTCACTTGGAA-CAAAAATCTTTGAAT
5213610 C
1 C
5213611 TATTTTCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (30 bp):
CAGTTTCACTTGGAACAAAAATCTTTGAAT
Found at i:5213735 original size:37 final size:37
Alignment explanation
Indices: 5213694--5213764 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
5213684 TTTTGATACT
*
5213694 AAGTTTTGTCTCTCTTGAGATAATTTCCCTTAAAATA
1 AAGTTTTGTCTCTCTTGAGACAATTTCCCTTAAAATA
* * *
5213731 AAGTTTTGTCTCTTTTGAGACAGTTTCTCTTAAA
1 AAGTTTTGTCTCTCTTGAGACAATTTCCCTTAAA
5213765 GCACCAATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (37 bp):
AAGTTTTGTCTCTCTTGAGACAATTTCCCTTAAAATA
Found at i:5216023 original size:16 final size:18
Alignment explanation
Indices: 5215988--5216028 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
5215978 TTATACAATC
5215988 AATATTTATCGTATTTAA
1 AATATTTATCGTATTTAA
*
5216006 AATA-TTATCTTA-TTAA
1 AATATTTATCGTATTTAA
5216022 AAT-TTTA
1 AATATTTA
5216029 AAATAAAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 10 0.48
17 7 0.33
18 4 0.19
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.51
Consensus pattern (18 bp):
AATATTTATCGTATTTAA
Found at i:5220552 original size:30 final size:30
Alignment explanation
Indices: 5220516--5220708 Score: 289
Period size: 30 Copynumber: 6.2 Consensus size: 30
5220506 TAATAAGGTT
5220516 ATTTATTTTAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
5220546 ATTTATTTTAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
*
5220576 ATTTATTATAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
5220606 ATTTATTTTAAAATAATTTATTATAAAATA
1 ATTTATTTTAAAATAATTTATTATAAAATA
*
5220636 ATTTATTTTAAAATAAATTATTATAAAATATGGA
1 ATTTATTTTAAAATAATTTATTAT-AAA-AT--A
*
5220670 TTGATTTATTTTAAAATAATTTATT-TTAAATA
1 ---ATTTATTTTAAAATAATTTATTATAAAATA
5220702 ATTTATT
1 ATTTATT
5220709 AGTATGGATT
Statistics
Matches: 151, Mismatches: 5, Indels: 15
0.88 0.03 0.09
Matches are distributed among these distances:
29 7 0.05
30 111 0.74
31 3 0.02
32 3 0.02
34 3 0.02
35 2 0.01
36 1 0.01
37 21 0.14
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (30 bp):
ATTTATTTTAAAATAATTTATTATAAAATA
Found at i:5220678 original size:22 final size:22
Alignment explanation
Indices: 5220653--5220750 Score: 72
Period size: 22 Copynumber: 4.3 Consensus size: 22
5220643 TTAAAATAAA
5220653 TTATTATAAAATATGGATTGAT
1 TTATTATAAAATATGGATTGAT
* ** * *
5220675 TTATTTTAAAATAATTTATTTTAAA
1 TTATTATAAAAT-ATGGA--TTGAT
* * *
5220700 TAATT-TATTAGTATGGATTGAT
1 TTATTATA-AAATATGGATTGAT
*
5220722 TTATTTTAAAATATGGATTGAT
1 TTATTATAAAATATGGATTGAT
5220744 TTATTAT
1 TTATTAT
5220751 TGTAGTTGTA
Statistics
Matches: 55, Mismatches: 16, Indels: 10
0.68 0.20 0.12
Matches are distributed among these distances:
22 36 0.65
23 5 0.09
24 5 0.09
25 9 0.16
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (22 bp):
TTATTATAAAATATGGATTGAT
Found at i:5220702 original size:14 final size:15
Alignment explanation
Indices: 5220516--5220708 Score: 253
Period size: 15 Copynumber: 12.5 Consensus size: 15
5220506 TAATAAGGTT
5220516 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
5220531 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
5220546 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
5220561 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
5220576 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
5220591 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
5220606 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
5220621 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
5220636 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
5220651 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
5220670 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
5220688 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
5220702 ATTTATT
1 ATTTATT
5220709 AGTATGGATT
Statistics
Matches: 161, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
14 12 0.07
15 129 0.80
16 4 0.02
17 2 0.01
18 1 0.01
19 1 0.01
20 2 0.01
21 4 0.02
22 6 0.04
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:5220782 original size:80 final size:79
Alignment explanation
Indices: 5220688--5220994 Score: 452
Period size: 80 Copynumber: 3.8 Consensus size: 79
5220678 TTTTAAAATA
*
5220688 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTATTG
5220753 TAGTTGTATGGATTG
66 TA-TTGTATGGATTG
5220768 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTA--TT--
* **
5220833 ATAATTTATTAGTATATATTG
62 AT--TGTATT-GTATGGATTG
* * *
5220854 ATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATTGATTGATTTATTATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTATTG
5220919 TAATTGTATGGATTG
66 T-ATTGTATGGATTG
* *
5220934 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGACTGGTTTATT
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATT
5220995 TTAAATAATT
Statistics
Matches: 204, Mismatches: 15, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
80 124 0.61
81 3 0.01
82 4 0.02
84 4 0.02
85 2 0.01
86 67 0.33
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (79 bp):
ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTATTG
TATTGTATGGATTG
Found at i:5220800 original size:32 final size:32
Alignment explanation
Indices: 5220758--5220897 Score: 167
Period size: 32 Copynumber: 4.7 Consensus size: 32
5220748 TATTGTAGTT
*
5220758 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGAATTGATTTATTTTAAATAATTTATTA
5220790 GTATGAATTGATTTATTTT-AA-AA--TA-T-
1 GTATGAATTGATTTATTTTAAATAATTTATTA
5220816 G---G-ATTGATTTATTTTAAATAATTTATTA
1 GTATGAATTGATTTATTTTAAATAATTTATTA
*
5220844 GTAT-ATATTGATTTATTTTAAATAATTTATTT
1 GTATGA-ATTGATTTATTTTAAATAATTTATTA
*
5220876 GTATGGATTGATTTATTTTAAA
1 GTATGAATTGATTTATTTTAAA
5220898 ATATTGATTG
Statistics
Matches: 93, Mismatches: 3, Indels: 24
0.77 0.03 0.20
Matches are distributed among these distances:
22 13 0.14
23 3 0.03
24 2 0.02
26 3 0.03
27 2 0.02
28 3 0.03
30 2 0.02
31 2 0.02
32 63 0.68
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (32 bp):
GTATGAATTGATTTATTTTAAATAATTTATTA
Found at i:5220816 original size:22 final size:22
Alignment explanation
Indices: 5220791--5220833 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5220781 AATTTATTAG
5220791 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
5220813 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
5220834 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:5220824 original size:54 final size:54
Alignment explanation
Indices: 5220759--5221009 Score: 253
Period size: 54 Copynumber: 4.6 Consensus size: 54
5220749 ATTGTAGTTG
5220759 TATGGATTGATTTATTTTAAATAATTTATTAGTATGA-ATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTAT-ATATTGATTTATTTTAAAA
5220813 TATGGATTGATTTATTTTAAATAATTTATTAGTATATATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATATATTGATTTATTTTAAAA
* * * ** * * ** **
5220866 TA---ATTTATTTGTATGGATTGATTTATTTTAAAATATTGATTGATTTATTATTGTAATTG
1 TATGGATTGATTTATTTTAAATAATTTA--TTAGTATA-T-ATTGATTTA-T-TT-TAA-AA
5220925 TATGGATTGATTTATTTTAAATAATTTATTAGTATGA-ATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTAT-ATATTGATTTATTTTAAAA
* *
5220979 TATGGACTGGTTTATTTTAAATAATTTATTA
1 TATGGATTGATTTATTTTAAATAATTTATTA
5221010 TTGTAGTTGT
Statistics
Matches: 159, Mismatches: 24, Indels: 28
0.75 0.11 0.13
Matches are distributed among these distances:
50 16 0.10
52 6 0.04
53 7 0.04
54 86 0.54
55 4 0.03
56 4 0.03
57 2 0.01
58 10 0.06
59 2 0.01
60 5 0.03
61 1 0.01
62 16 0.10
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATATATTGATTTATTTTAAAA
Found at i:5220841 original size:14 final size:14
Alignment explanation
Indices: 5220822--5220875 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
5220812 ATATGGATTG
5220822 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
5220836 ATTTATTAGTATATATTG
1 ATTTATT--T-TA-AATA
5220854 ATTTATTTTAAATA
1 ATTTATTTTAAATA
5220868 ATTTATTT
1 ATTTATTT
5220876 GTATGGATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 17 0.53
15 2 0.06
16 2 0.06
17 2 0.06
18 9 0.28
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:5220860 original size:166 final size:166
Alignment explanation
Indices: 5220688--5221009 Score: 599
Period size: 166 Copynumber: 1.9 Consensus size: 166
5220678 TTTTAAAATA
5220688 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTG
*
5220753 TAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGG
66 TAATTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGG
*
5220818 ATTGATTTATTTTAAATAATTTATTAGTATATATTG
131 ACTGATTTATTTTAAATAATTTATTAGTATATATTG
* *
5220854 ATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATTGATTGATTTATTATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTG
5220919 TAATTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGG
66 TAATTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGG
*
5220984 ACTGGTTTATTTTAAATAATTTATTA
131 ACTGATTTATTTTAAATAATTTATTA
5221010 TTGTAGTTGT
Statistics
Matches: 151, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
166 151 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (166 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTG
TAATTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGG
ACTGATTTATTTTAAATAATTTATTAGTATATATTG
Found at i:5220893 original size:22 final size:22
Alignment explanation
Indices: 5220868--5220941 Score: 53
Period size: 22 Copynumber: 3.2 Consensus size: 22
5220858 ATTTTAAATA
5220868 ATTTATTTGTATGGATTGATTT
1 ATTTATTTGTATGGATTGATTT
* *
5220890 ATTTTAAAATATTG-ATTGATTTA-TT
1 A-TTT---AT-TTGTATGGATTGATTT
*
5220915 ATTGTAATTGTATGGATTGATTT
1 ATT-TATTTGTATGGATTGATTT
5220938 ATTT
1 ATTT
5220942 TAAATAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 16
0.65 0.08 0.27
Matches are distributed among these distances:
21 3 0.08
22 10 0.26
23 8 0.21
24 2 0.05
25 4 0.10
26 9 0.23
27 3 0.08
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (22 bp):
ATTTATTTGTATGGATTGATTT
Found at i:5220932 original size:26 final size:24
Alignment explanation
Indices: 5220869--5220942 Score: 80
Period size: 26 Copynumber: 3.1 Consensus size: 24
5220859 TTTTAAATAA
*
5220869 TTTATTTGTATGGATTGATTTA-T
1 TTTAATTGTATGGATTGATTTATT
** *
5220892 TTTAA-AATATTGATTGATTTATT
1 TTTAATTGTATGGATTGATTTATT
5220915 ATTGTAATTGTATGGATTGATTTATT
1 -TT-TAATTGTATGGATTGATTTATT
5220941 TT
1 TT
5220943 AAATAATTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
22 13 0.32
23 5 0.12
24 2 0.05
25 5 0.12
26 15 0.38
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (24 bp):
TTTAATTGTATGGATTGATTTATT
Found at i:5220982 original size:22 final size:22
Alignment explanation
Indices: 5220957--5220999 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
5220947 AATTTATTAG
*
5220957 TATGAATTGATTTATTTTAAAA
1 TATGAACTGATTTATTTTAAAA
* *
5220979 TATGGACTGGTTTATTTTAAA
1 TATGAACTGATTTATTTTAAA
5221000 TAATTTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (22 bp):
TATGAACTGATTTATTTTAAAA
Found at i:5221058 original size:31 final size:31
Alignment explanation
Indices: 5221023--5221082 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
5221013 TAGTTGTATG
* *
5221023 AATTATTTAAATTTCAGTATTGTAAAACTAA
1 AATTATTTAAATCTCAGTATTGCAAAACTAA
5221054 AATTATTTAAATCTCAGTATTGCAAAACT
1 AATTATTTAAATCTCAGTATTGCAAAACT
5221083 CTTTTAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (31 bp):
AATTATTTAAATCTCAGTATTGCAAAACTAA
Found at i:5227077 original size:23 final size:22
Alignment explanation
Indices: 5227051--5227097 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
5227041 ATAAAGTACA
*
5227051 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAG-GCTTAT
**
5227074 ATAATGTAATAGGTAGGCTTAT
1 ATAACATAATAGGTAGGCTTAT
5227096 AT
1 AT
5227098 TTACCTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (22 bp):
ATAACATAATAGGTAGGCTTAT
Found at i:5227606 original size:23 final size:23
Alignment explanation
Indices: 5227576--5227638 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5227566 ACTTTACAAC
5227576 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
*
5227599 TACCTATTACATTATATAAACGC
1 TACCTATTACATTATATAAACGA
* *
5227622 TATCTATTACATCATAT
1 TACCTATTACATTATAT
5227639 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5228087 original size:23 final size:23
Alignment explanation
Indices: 5228057--5228119 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5228047 ACTTTACAAC
5228057 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5228080 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5228103 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5228120 TTTTACATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5228444 original size:482 final size:482
Alignment explanation
Indices: 5227171--5228519 Score: 2511
Period size: 481 Copynumber: 2.8 Consensus size: 482
5227161 TTATAATATG
* *
5227171 TTGAAAGTGTCCATACTTTTTATAAAAAGGGTCGATAATTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
* **
5227236 TCAATTTTTTTTAATAATGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGTA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
5227301 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5227366 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
5227431 ATCGTAACGTAAAAAATAAATCATTAGACGCATATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
5227496 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
*
5227561 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAACGCTATC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAACGCTACC
*
5227626 TATTACATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACATATTATA
*
5227653 TTGAAAGTGTTCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
5227718 TCAA-TTTTTTTAATAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
5227782 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5227847 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
* *
5227912 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTAATAAATTAATATTTTAAAACTCACT
261 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
* *
5227977 CAAAAGATAACCTTAAATTATTGTTTTCTACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
*
5228042 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAACGCTACC
5228107 TATTACATCATATTTTTACATATTATA
456 TATTACATCATATTTTTACATATTATA
*
5228134 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCAATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
5228199 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
5228264 CACAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5228329 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
5228394 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
5228459 CAAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAGTATGGACACTTTTACTAAA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTA-TAAA
5228520 TTATATTTTG
Statistics
Matches: 840, Mismatches: 25, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
481 466 0.55
482 370 0.44
483 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (482 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAACGCTACC
TATTACATCATATTTTTACATATTATA
Found at i:5228713 original size:17 final size:18
Alignment explanation
Indices: 5228691--5228733 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
5228681 ATATATCCGG
5228691 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
5228708 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
5228728 TATCAT
1 TATCAT
5228734 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:5228742 original size:20 final size:19
Alignment explanation
Indices: 5228696--5228742 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
5228686 TCCGGTATCA
5228696 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
5228715 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
5228736 TTTTACC
1 TTTTACC
5228743 TGTTATGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:5228904 original size:20 final size:20
Alignment explanation
Indices: 5228877--5228923 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
5228867 TCTGGCAACG
5228877 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
5228896 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
5228917 TTTTACC
1 TTTTACC
5228924 TGGTATACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:5229498 original size:229 final size:230
Alignment explanation
Indices: 5228972--5229690 Score: 1331
Period size: 229 Copynumber: 3.1 Consensus size: 230
5228962 ACTTTTATAC
5228972 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
5229036 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
* *
5229101 TTATTTGATT-ATTTGATATTTTATAAAATATTATTTAGAATTTCAATTTAACAATATTAACCAA
131 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
5229165 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
196 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
*
5229200 GTATGGACACTTTTATAAAAATAATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
5229265 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
5229330 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
131 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
5229395 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
196 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
5229430 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
* *
5229495 TTTTTAATAGTGTTTCATGTTTT-CACCTATAATATTAATTTAATAATTTCATTTACACACAAAA
66 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
5229559 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
131 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
*
5229624 AGATAATAAT-AATATATTTT-CACAGTGAAATAA
196 AGATAATAATAAATATGTTTTCCACAGTGAAATAA
* *
5229657 GTATGGACACTTTTATAAAAAGGATAGATACTTT
1 GTATGGACACTTTTATAAAAATGATATATACTTT
5229691 ACAATATAAC
Statistics
Matches: 480, Mismatches: 9, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
227 45 0.09
228 70 0.15
229 191 0.40
230 174 0.36
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (230 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
AGATAATAATAAATATGTTTTCCACAGTGAAATAA
Found at i:5235860 original size:17 final size:18
Alignment explanation
Indices: 5235821--5235863 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
5235811 GGTTTTAGCA
*
5235821 ATTTTTATTTCCTTTTAG
1 ATTTTTATTTCCTTATAG
*
5235839 ATTTTTATTTCGTTATAG
1 ATTTTTATTTCCTTATAG
*
5235857 TTTTTTA
1 ATTTTTA
5235864 AATAGATCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.67
Consensus pattern (18 bp):
ATTTTTATTTCCTTATAG
Found at i:5238587 original size:16 final size:16
Alignment explanation
Indices: 5238553--5238597 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
5238543 GAAAACCGAA
*
5238553 AAAATAACCCTAACCG
1 AAAATAACCCGAACCG
*
5238569 AAAATAACCCGAACTG
1 AAAATAACCCGAACCG
5238585 -AAATCAACCCGAA
1 AAAAT-AACCCGAA
5238598 TTTATTTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.51, C:0.29, G:0.09, T:0.11
Consensus pattern (16 bp):
AAAATAACCCGAACCG
Found at i:5239161 original size:12 final size:12
Alignment explanation
Indices: 5239140--5239185 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
5239130 GTTAGAATGC
*
5239140 ATATATAAAATA
1 ATATAAAAAATA
5239152 ATATAAAAAATTA
1 ATATAAAAAA-TA
*
5239165 A-AT-TAAAATA
1 ATATAAAAAATA
5239175 ATATAAAAAAT
1 ATATAAAAAAT
5239186 TCTAGAGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
10 3 0.11
11 6 0.21
12 16 0.57
13 3 0.11
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
ATATAAAAAATA
Found at i:5239276 original size:2 final size:2
Alignment explanation
Indices: 5239271--5239304 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
5239261 AAATAAATTA
5239271 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5239305 TATGTATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5239702 original size:31 final size:31
Alignment explanation
Indices: 5239667--5239769 Score: 143
Period size: 31 Copynumber: 3.3 Consensus size: 31
5239657 TGACCCATAC
5239667 CGAAACCAACCAACCCGATACTAACCCGACT
1 CGAAACCAACCAACCCGATACTAACCCGACT
* *
5239698 CGAAACCAGCCAACCCGATACTAACTCGACT
1 CGAAACCAACCAACCCGATACTAACCCGACT
* * * *
5239729 CGAAATCAACCGATCCGATATTAACCCGACT
1 CGAAACCAACCAACCCGATACTAACCCGACT
5239760 CGAAAACCAA
1 CG-AAACCAA
5239770 TTGATGCGAT
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
31 56 0.90
32 6 0.10
ACGTcount: A:0.39, C:0.37, G:0.12, T:0.13
Consensus pattern (31 bp):
CGAAACCAACCAACCCGATACTAACCCGACT
Found at i:5239812 original size:32 final size:32
Alignment explanation
Indices: 5239724--5239818 Score: 104
Period size: 32 Copynumber: 3.0 Consensus size: 32
5239714 GATACTAACT
* * * *
5239724 CGACTCG-AAATCAACCGATCCGATATTAACC
1 CGACTCGAAAACCAACTGATCCGATTTTGACC
* * *
5239755 CGACTCGAAAACCAATTGATGCGATTTTGACT
1 CGACTCGAAAACCAACTGATCCGATTTTGACC
5239787 CGAC-CAGAAAACCAACTGATCCGATTTTGACC
1 CGACTC-GAAAACCAACTGATCCGATTTTGACC
5239819 TGACCCGATA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
31 8 0.15
32 44 0.85
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (32 bp):
CGACTCGAAAACCAACTGATCCGATTTTGACC
Found at i:5243235 original size:6 final size:6
Alignment explanation
Indices: 5243224--5243249 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
5243214 TGGTGGTTAC
5243224 CGTGGT CGTGGT CGTGGT CGTGGT CG
1 CGTGGT CGTGGT CGTGGT CGTGGT CG
5243250 AGGAAGGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.50, T:0.31
Consensus pattern (6 bp):
CGTGGT
Found at i:5247873 original size:21 final size:21
Alignment explanation
Indices: 5247844--5247890 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
5247834 GGGGAGGAGG
* *
5247844 AGAAAAAGAATAAGAA-AGAGA
1 AGAATAAGAAGAAGAAGA-AGA
*
5247865 AGAATAAGACGAAGAAGAAGA
1 AGAATAAGAAGAAGAAGAAGA
5247886 AGAAT
1 AGAAT
5247891 GAATGAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.66, C:0.02, G:0.26, T:0.06
Consensus pattern (21 bp):
AGAATAAGAAGAAGAAGAAGA
Found at i:5251421 original size:18 final size:18
Alignment explanation
Indices: 5251398--5251462 Score: 76
Period size: 18 Copynumber: 3.4 Consensus size: 18
5251388 ATGATAAACA
5251398 ATATCATACATAATAGTC
1 ATATCATACATAATAGTC
* **
5251416 ATATCAAAGCCATAATAAAC
1 ATATCATA--CATAATAGTC
5251436 AATATCATACATAATAGTC
1 -ATATCATACATAATAGTC
5251455 ATATCATA
1 ATATCATA
5251463 TTCTTTTTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
18 15 0.39
19 8 0.21
20 8 0.21
21 7 0.18
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (18 bp):
ATATCATACATAATAGTC
Found at i:5251421 original size:39 final size:39
Alignment explanation
Indices: 5251378--5251460 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
5251368 CTCATGATTT
*
5251378 TATCAAAACCATGATAAACAATATCATACATAATAGTCA
1 TATCAAAACCATAATAAACAATATCATACATAATAGTCA
*
5251417 TATCAAAGCCATAATAAACAATATCATACATAATAGTCA
1 TATCAAAACCATAATAAACAATATCATACATAATAGTCA
5251456 TATCA
1 TATCA
5251461 TATTCTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.51, C:0.18, G:0.05, T:0.27
Consensus pattern (39 bp):
TATCAAAACCATAATAAACAATATCATACATAATAGTCA
Found at i:5251540 original size:25 final size:26
Alignment explanation
Indices: 5251490--5251569 Score: 83
Period size: 25 Copynumber: 3.0 Consensus size: 26
5251480 ACAATAAAAA
* *
5251490 ACTTTCAAATCTCATTTTCATC-TTTC
1 ACTTTCATATCTCACTTTCA-CATTTC
5251516 ACTTTCATAT-TCACTTTCACATTTC
1 ACTTTCATATCTCACTTTCACATTTC
* *
5251541 ATTTTCATAATCCGCACTTTCACATTTC
1 ACTTTCAT-AT-CTCACTTTCACATTTC
5251569 A
1 A
5251570 GAACTCATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.02
25 19 0.41
26 11 0.24
28 15 0.33
ACGTcount: A:0.25, C:0.28, G:0.01, T:0.46
Consensus pattern (26 bp):
ACTTTCATATCTCACTTTCACATTTC
Found at i:5251590 original size:19 final size:18
Alignment explanation
Indices: 5251566--5251644 Score: 56
Period size: 19 Copynumber: 4.2 Consensus size: 18
5251556 ACTTTCACAT
5251566 TTCAGAACTCATTTTCAGA
1 TTCAGAACT-ATTTTCAGA
5251585 TTCAGAACT-TGTTTCAGGA
1 TTCAGAACTAT-TTTCA-GA
* *
5251604 CTCAAAACT-TATTTCAGA
1 TTCAGAACTAT-TTTCAGA
*
5251622 TTCATAACTTAATTTT-AGA
1 TTCAGAAC-T-ATTTTCAGA
5251641 TTCA
1 TTCA
5251645 TAGTTTATTT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
17 1 0.02
18 13 0.26
19 32 0.64
20 3 0.06
21 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39
Consensus pattern (18 bp):
TTCAGAACTATTTTCAGA
Found at i:5251645 original size:19 final size:18
Alignment explanation
Indices: 5251578--5251646 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
5251568 CAGAACTCAT
* *
5251578 TTTCAGATTCAGAACTTG
1 TTTCAGATTCATAACTTA
* *
5251596 TTTCAGGACTCAAAACTTA
1 TTTCA-GATTCATAACTTA
5251615 TTTCAGATTCATAACTTAA
1 TTTCAGATTCATAACTT-A
*
5251634 TTTTAGATTCATA
1 TTTCAGATTCATA
5251647 GTTTATTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (18 bp):
TTTCAGATTCATAACTTA
Found at i:5254596 original size:38 final size:39
Alignment explanation
Indices: 5254545--5254622 Score: 140
Period size: 38 Copynumber: 2.0 Consensus size: 39
5254535 TACATTTTGG
5254545 TCACTAACCAAAATTTTGGGG-TGTTACAAACATCATGT
1 TCACTAACCAAAATTTTGGGGTTGTTACAAACATCATGT
*
5254583 TCACTAACTAAAATTTTGGGGTTGTTACAAACATCATGT
1 TCACTAACCAAAATTTTGGGGTTGTTACAAACATCATGT
5254622 T
1 T
5254623 AACAACTTGG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 20 0.53
39 18 0.47
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (39 bp):
TCACTAACCAAAATTTTGGGGTTGTTACAAACATCATGT
Found at i:5260009 original size:38 final size:37
Alignment explanation
Indices: 5259949--5260216 Score: 289
Period size: 38 Copynumber: 7.1 Consensus size: 37
5259939 TATTATATAT
* *
5259949 AAAAATATTTTCAAAAACATATA-A-TATATAATTTTC
1 AAAAATGTTTTAAAAAAC-TATATATTATATAATTTTC
* * *
5259985 CAAAATGTTTTAAAAAAATTATATATTATATATGTTTTC
1 AAAAATGTTTT-AAAAAACTATATATTATATA-ATTTTC
* *
5260024 AAAAGTG-TTTAAAAAACTATATATTACAT-ATTTTC
1 AAAAATGTTTTAAAAAACTATATATTATATAATTTTC
* *
5260059 -AAAATGTTTTTAAAAAACTATATAATATATAAATATTTT
1 AAAAATG-TTTTAAAAAACTATATATTATAT-AAT-TTTC
*
5260098 AAAAATGTTTT-CAAAACTATATATTAT-TAAGTTTTC
1 AAAAATGTTTTAAAAAACTATATATTATATAA-TTTTC
*
5260134 AAAAATGTTTTCAAAAACTATATATTATATATATTTTC
1 AAAAATGTTTTAAAAAACTATATATTATATA-ATTTTC
5260172 AAAAATGTTTTAAAAAACTATATATTATATACGTATTTTC
1 AAAAATGTTTTAAAAAACTATATATTATATA---ATTTTC
5260212 AAAAA
1 AAAAA
5260217 CCATTTGCAA
Statistics
Matches: 197, Mismatches: 19, Indels: 28
0.81 0.08 0.11
Matches are distributed among these distances:
34 5 0.03
35 5 0.03
36 49 0.25
37 40 0.20
38 62 0.31
39 18 0.09
40 18 0.09
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (37 bp):
AAAAATGTTTTAAAAAACTATATATTATATAATTTTC
Found at i:5260156 original size:75 final size:73
Alignment explanation
Indices: 5259949--5260199 Score: 287
Period size: 75 Copynumber: 3.4 Consensus size: 73
5259939 TATTATATAT
* * *
5259949 AAAAATATTTTCAAAAAC-ATATAATATATAATTTTCCAAAATGTTTTAAAAAAAT-TATATATT
1 AAAAATGTTTT-AAAAACTATATATTAT-TAATTTT-CAAAATGTTTTAAAAAACTATATATA-T
*
5260012 ATATATGTTTTC
62 ATATATATTTTC
* * *
5260024 AAAAGTGTTTAAAAAACTATATATTA-CATATTTTCAAAATGTTTTTAAAAAACTATATAATATA
1 AAAAATGTTTTAAAAACTATATATTATTA-ATTTTCAAAATG-TTTTAAAAAACTATAT-ATATA
*
5260088 TAAATATTTT-
63 TATATATTTTC
* *
5260098 AAAAATGTTTTCAAAACTATATATTATTAAGTTTTCAAAAATGTTTTCAAAAACTATATAT-TAT
1 AAAAATGTTTTAAAAACTATATATTATTAA-TTTTC-AAAATGTTTTAAAAAACTATATATATAT
5260162 ATATATTTTC
64 ATATATTTTC
5260172 AAAAATGTTTTAAAAAACTATATATTAT
1 AAAAATGTTTT-AAAAACTATATATTAT
5260200 ATACGTATTT
Statistics
Matches: 151, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
73 19 0.13
74 59 0.39
75 64 0.42
76 9 0.06
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (73 bp):
AAAAATGTTTTAAAAACTATATATTATTAATTTTCAAAATGTTTTAAAAAACTATATATATATAT
ATATTTTC
Found at i:5260233 original size:75 final size:74
Alignment explanation
Indices: 5260004--5260243 Score: 217
Period size: 75 Copynumber: 3.2 Consensus size: 74
5259994 TTAAAAAAAT
* * * *
5260004 TATATATTATATATGTTTTCAAAAGTG-TTTAAAAAAC--TATA-TATTACATATTTTCAAAATG
1 TATATA-TATATATATTTTCAAAAATGTTTTAAAAAACTATATATTATTACGTATTTTCAAAA-A
* *
5260065 TTTTTAAAAAAC
64 TATTT-ACAAAC
* *
5260077 TATATAATATATAAATATTTT-AAAAATGTTTT-CAAAACTATATATTATTAAG--TTTTCAAAA
1 TATAT-ATATAT--ATATTTTCAAAAATGTTTTAAAAAACTATATATTATTACGTATTTTCAAAA
* *
5260138 ATGTTTTCAAAAAC
63 AT-ATTT-ACAAAC
5260152 TATATATTATATATATTTTCAAAAATGTTTTAAAAAACTATATATTATATACGTATTTTCAAAAA
1 TATATA-TATATATATTTTCAAAAATGTTTTAAAAAACTATATATTAT-TACGTATTTTCAAAAA
* *
5260217 CCATTTGCAAAC
64 -TATTTACAAAC
5260229 TATATATATATATAT
1 TATATATATATATAT
5260244 ATATATATGG
Statistics
Matches: 139, Mismatches: 13, Indels: 27
0.78 0.07 0.15
Matches are distributed among these distances:
73 17 0.12
74 25 0.18
75 53 0.38
76 16 0.12
77 15 0.11
78 13 0.09
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.43
Consensus pattern (74 bp):
TATATATATATATATTTTCAAAAATGTTTTAAAAAACTATATATTATTACGTATTTTCAAAAATA
TTTACAAAC
Found at i:5260241 original size:40 final size:38
Alignment explanation
Indices: 5259961--5260245 Score: 176
Period size: 38 Copynumber: 7.6 Consensus size: 38
5259951 AAATATTTTC
* * ***
5259961 AAAAAC-ATATAATATATA-ATTTTCCAAAATGTTTTAA
1 AAAAACTATATATTATATATATTTTCAAAAACCATTT-A
* * ***
5259998 AAAAATTATATATTATATATGTTTTC-AAAAGTGTTTA
1 AAAAACTATATATTATATATATTTTCAAAAACCATTTA
* ****
5260035 AAAAACTATATA-T-TACATATTTTCAAAATGTTTTTA
1 AAAAACTATATATTATATATATTTTCAAAAACCATTTA
* ** *
5260071 AAAAACTATATAATATATAAATATTTT-AAAAA-TGTTTT
1 AAAAACTATAT-AT-TATATATATTTTCAAAAACCATTTA
* *** *
5260109 CAAAACTATATATTAT-TA-AGTTTTCAAAAATGTTTTC
1 AAAAACTATATATTATATATA-TTTTCAAAAACCATTTA
***
5260146 AAAAACTATATATTATATATATTTTCAAAAATGTTTTA
1 AAAAACTATATATTATATATATTTTCAAAAACCATTTA
5260184 AAAAACTATATATTATATACGTATTTTCAAAAACCATTT-
1 AAAAACTATATATTATATA--TATTTTCAAAAACCATTTA
**
5260223 GCAAACTATATATATATATATAT
1 AAAAACTATATAT-TATATATAT
5260246 ATATATGGAC
Statistics
Matches: 206, Mismatches: 27, Indels: 29
0.79 0.10 0.11
Matches are distributed among these distances:
34 1 0.00
35 14 0.07
36 29 0.14
37 38 0.18
38 72 0.35
39 22 0.11
40 30 0.15
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (38 bp):
AAAAACTATATATTATATATATTTTCAAAAACCATTTA
Found at i:5261035 original size:84 final size:84
Alignment explanation
Indices: 5260791--5262370 Score: 1834
Period size: 84 Copynumber: 19.0 Consensus size: 84
5260781 CAGTTTGTGA
* * * * * * *
5260791 CAGATAGCCCTTCTTGCCTTGAGCTATGCTGTAAATTGGATATGCCTTTGAGTTGA--GT-GT--
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAA-T-GATGTGCCTTGGAGCTGAGCGTAGTCG
* **
5260851 AA-TCGAAGGTC-TTGGTTCA
64 AACTCGAAGGTCTTTTGTTGG
* ** * * *
5260870 CAGATAACCCTTCTCGCCTTGAGTTATGCTATAAATTTGATGT-CCATTTGAGCTGAGTGTAATC
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAA--TGATGTGCC-TTGGAGCTGAGCGTAGTC
*
5260934 GAACTCGAAGGTCTTTTGTTGA
63 GAACTCGAAGGTCTTTTGTTGG
* * * * * *
5260956 CAGATAACCCTTATCGCCTTGAGCTATGCTACAAATGATGTGCCTTGGAGTTGAGCGTAATCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
5261021 CTCGAAGGTCTTTTGTTGG
66 CTCGAAGGTCTTTTGTTGG
* * * * * *
5261040 CAGATAACCCTTTTAGCCTTGAGTTATGCTACAAAT-AT-TG---TGGAGATGAGTGTAATCAAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
*
5261100 CTCGAAAGTCTTTTGTTGG
66 CTCGAAGGTCTTTTGTTGG
*
5261119 CAGATAACCCTTCTAGACTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
5261184 CTCGAAGGTCTTTTGTTGG
66 CTCGAAGGTCTTTTGTTGG
* * *
5261203 TAGATAACCCTTCCAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAATCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
*
5261268 CTCGAAGGTCTTTTGGTGG
66 CTCGAAGGTCTTTTGTTGG
* * * * *
5261287 CAAATAACCCTTCTTGCCTTGAGCTATGTTGCAAATGATGTGCCTTGGAGCTGATCGTAGTCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
* *
5261352 CTCGAAGGTCTTTGGTTGA
66 CTCGAAGGTCTTTTGTTGG
* * * * *
5261371 CA-ATAACCCTTCTAGCCTTGAGTTATGCTGCAAATTATGAGCCTTTGAGCAGAGCGTATTCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
* * *
5261435 CTCGTAGGTTTTTTGTTAG
66 CTCGAAGGTCTTTTGTTGG
* * * * ** * * * * *
5261454 CAAATAGCCCTTCTTGCCTTGAGCTATATTGCAAATGATGTACCTTAGAACTGAGCGTAATAGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
5261519 CTCGAAGGTCTTTTGTTGG
66 CTCGAAGGTCTTTTGTTGG
* * * *
5261538 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATTGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
5261603 CTCGAAGGTCTTTTG--GG
66 CTCGAAGGTCTTTTGTTGG
*
5261620 CAGATAACCCTT-TAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
*
5261684 CTCGAAGGTATTTTGTTGG
66 CTCGAAGGTCTTTTGTTGG
* * * *
5261703 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTAGTGTTGAGCGTAATCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
*
5261768 CTCGAA-GTCTTTTGGTGG
66 CTCGAAGGTCTTTTGTTGG
* * ** * * *
5261786 CAAATAACCCTTATTTCCTTGAGCTATGTTACAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
*
5261851 CTCGAAGGTCTTTGGTTGG
66 CTCGAAGGTCTTTTGTTGG
* * * * * * *
5261870 CAGATAACCCTTCTAGCATTGAGTTATGCTGTAAATGATATGTCTTTGAGCTGAGTGTAGTCCAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
* *
5261935 CTCGAAAGTCTTTTGGTGG
66 CTCGAAGGTCTTTTGTTGG
* * ** * * * * *
5261954 CAAATAACCCTTCTTGTGTTGAGCTATGTTGTAAATGATATGTCTTGGAGCTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
* *
5262019 CTCGAAGGTCTTTGGTTAG
66 CTCGAAGGTCTTTTGTTGG
* ** *
5262038 CAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCTTTAAGCTGAGCGTAGTTGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
5262103 CTCGAAGGTCTTTTGTTGG
66 CTCGAAGGTCTTTTGTTGG
* * * * * * * * * *
5262122 CAAATAATCCTTCTTGTCTTGAGTTATGTTTCAAATGGTATGCATTGGAGTTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
*
5262187 CTCGAAGGTCTTTTATTGG
66 CTCGAAGGTCTTTTGTTGG
* * * *
5262206 AAGATAACCCTTCTAGCCTTGAGTTATACTGTAAATGATGTGCTTTGGAG-TGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
5262270 CTCGAAGGTCTTTTGTTGG
66 CTCGAAGGTCTTTTGTTGG
* * * * * *
5262289 CAGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGTTGTGTCTTTGAGCTGA--GTAATCGAA
1 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
*
5262352 TTCGAAGGTCTTTTGTTGG
66 CTCGAAGGTCTTTTGTTGG
5262371 AATAGGTCTT
Statistics
Matches: 1284, Mismatches: 196, Indels: 39
0.85 0.13 0.03
Matches are distributed among these distances:
78 2 0.00
79 112 0.09
80 4 0.00
81 65 0.05
82 43 0.03
83 228 0.18
84 781 0.61
85 11 0.01
86 38 0.03
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (84 bp):
CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA
CTCGAAGGTCTTTTGTTGG
Done.