Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8646418
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 43
Found at i:6937899 original size:61 final size:60
Alignment explanation
Indices: 6937827--6937979 Score: 216
Period size: 61 Copynumber: 2.5 Consensus size: 60
6937817 ACGTTGCATT
* *
6937827 TCGCGTTGCGATTTTTCATTTCGCGTTGCGATTTTCCAGTTCGCGTTGCAATAGTTGAAAA
1 TCGCGTTGCGATTTTTCATTTCGCGTTGCGATTTTCCAGTTCGCGTGGCAAT-GTTCAAAA
* * * * * **
6937888 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTCCATTTCGCGTGGCGATTTTCTATT
1 TCGCGTTGCGATTTTTCATTTCGCGTTGCGATTTTCCAGTTCGCGTGGCAATGTTCAAAA
6937948 TCGCGTTGCGATTTTTCATTTCGCGTTGCGAT
1 TCGCGTTGCGATTTTTCATTTCGCGTTGCGAT
6937980 AGTCTACAGT
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
60 34 0.41
61 48 0.59
ACGTcount: A:0.13, C:0.22, G:0.23, T:0.42
Consensus pattern (60 bp):
TCGCGTTGCGATTTTTCATTTCGCGTTGCGATTTTCCAGTTCGCGTGGCAATGTTCAAAA
Found at i:6938016 original size:101 final size:100
Alignment explanation
Indices: 6937823--6938019 Score: 256
Period size: 101 Copynumber: 1.9 Consensus size: 100
6937813 ATTCACGTTG
*
6937823 CATTTCGCGTTGCGATTTTTCATTTCGCGTTGCGATTTTCCAGTTCGCGTTGCAATAGTTGAAAA
1 CATTTCGCGTGGCGATTTTTCATTTCGCGTTGCGATTTTCCAGTTCGCGTTGCAATAGTTGAAAA
*
6937888 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTC
66 TCGCGTTGCGATTTTCCAATTC-CGTTGCGATTTTC
* * * *
6937924 CATTTCGCGTGGCGA-TTTTCTATTTCGCGTTGCGATTTTTCATTTCGCGTTGCGATAGTCT-AC
1 CATTTCGCGTGGCGATTTTTC-ATTTCGCGTTGCGATTTTCCAGTTCGCGTTGCAATAGT-TGAA
* *
6937987 AGTTGTCGTTGCGATTTTCCAAATT-CGTTGCGA
64 AATCG-CGTTGCGATTTTCC-AATTCCGTTGCGA
6938020 AAATTCGTTG
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
100 5 0.06
101 61 0.73
102 15 0.18
103 3 0.04
ACGTcount: A:0.15, C:0.21, G:0.22, T:0.42
Consensus pattern (100 bp):
CATTTCGCGTGGCGATTTTTCATTTCGCGTTGCGATTTTCCAGTTCGCGTTGCAATAGTTGAAAA
TCGCGTTGCGATTTTCCAATTCCGTTGCGATTTTC
Found at i:6938025 original size:13 final size:13
Alignment explanation
Indices: 6938007--6938032 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6937997 GCGATTTTCC
6938007 AAATTCGTTGCGA
1 AAATTCGTTGCGA
6938020 AAATTCGTTGCGA
1 AAATTCGTTGCGA
6938033 TAGTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
AAATTCGTTGCGA
Found at i:6938642 original size:6 final size:6
Alignment explanation
Indices: 6938631--6938670 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
6938621 GGGCCGGCCG
6938631 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTC
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTC
6938671 ATACGTGTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:6938795 original size:22 final size:22
Alignment explanation
Indices: 6938768--6938817 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
6938758 AATTTGGAAA
*
6938768 ATCGCAACGACAACTGTAGACT
1 ATCGCAACAACAACTGTAGACT
6938790 ATCGCAACAACAACTGTAGACT
1 ATCGCAACAACAACTGTAGACT
6938812 ATCGCA
1 ATCGCA
6938818 TTGCGATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.38, C:0.28, G:0.16, T:0.18
Consensus pattern (22 bp):
ATCGCAACAACAACTGTAGACT
Found at i:6946766 original size:100 final size:100
Alignment explanation
Indices: 6946641--6946842 Score: 350
Period size: 100 Copynumber: 2.0 Consensus size: 100
6946631 AAAATTCAAG
*
6946641 TAGAACTCCGACCGGGTTCCTTCCTCACCCCACTTCCCTCCGTCAGGCTTCTGATCTCTACAACT
1 TAGAACTCCGACCGGGTTCCTTCCTCACCCCACTTCCCTCCATCAGGCTTCTGATCTCTACAACT
6946706 CCTTCCCACTGACCTATGTCAGCACAGATATTAGA
66 CCTTCCCACTGACCTATGTCAGCACAGATATTAGA
* * * **
6946741 TAGAACTCCGACCGGTTTCCTTCCTCGCTCCACTTCCCTCCATCAGGCTTCTGATCTCTAGGACT
1 TAGAACTCCGACCGGGTTCCTTCCTCACCCCACTTCCCTCCATCAGGCTTCTGATCTCTACAACT
6946806 CCTTCCCACTGACCTATGTCAGCACAGATATTAGA
66 CCTTCCCACTGACCTATGTCAGCACAGATATTAGA
6946841 TA
1 TA
6946843 AGGAAACATA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 96 1.00
ACGTcount: A:0.21, C:0.37, G:0.14, T:0.28
Consensus pattern (100 bp):
TAGAACTCCGACCGGGTTCCTTCCTCACCCCACTTCCCTCCATCAGGCTTCTGATCTCTACAACT
CCTTCCCACTGACCTATGTCAGCACAGATATTAGA
Found at i:6949924 original size:15 final size:15
Alignment explanation
Indices: 6949904--6949933 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6949894 AGTTTTAACA
6949904 CATCATATCAAACTT
1 CATCATATCAAACTT
6949919 CATCATATCAAACTT
1 CATCATATCAAACTT
6949934 ACACAAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (15 bp):
CATCATATCAAACTT
Found at i:6950660 original size:15 final size:15
Alignment explanation
Indices: 6950640--6950676 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
6950630 ATATTTAGTT
*
6950640 GGGCGGGCGGATGTG
1 GGGCGGGCGGATGCG
6950655 GGGCGGGCGGATGCG
1 GGGCGGGCGGATGCG
6950670 GGGCGGG
1 GGGCGGG
6950677 TAATGTCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.05, C:0.16, G:0.70, T:0.08
Consensus pattern (15 bp):
GGGCGGGCGGATGCG
Found at i:6953409 original size:15 final size:14
Alignment explanation
Indices: 6953380--6953415 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
6953370 TTTTTCTTAC
*
6953380 TATAATTATATTAT
1 TATAATTATAATAT
6953394 TATAATATATAATAT
1 TATAAT-TATAATAT
6953409 TATAATT
1 TATAATT
6953416 TTATTTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATAATTATAATAT
Found at i:6953412 original size:29 final size:29
Alignment explanation
Indices: 6953380--6953440 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
6953370 TTTTTCTTAC
6953380 TATAATTATATTATT-ATAATATA-TAATAT
1 TATAATTATATT-TTAATAATATATTAA-AT
*
6953409 TATAATTTTATTTTAATAATATATTAAAT
1 TATAATTATATTTTAATAATATATTAAAT
6953438 TAT
1 TAT
6953441 TAATAAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 2 0.07
29 24 0.83
30 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (29 bp):
TATAATTATATTTTAATAATATATTAAAT
Found at i:6953459 original size:18 final size:19
Alignment explanation
Indices: 6953417--6953466 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
6953407 ATTATAATTT
6953417 TATT-TTAATAATATATTAA
1 TATTATTAATAA-ATATTAA
6953436 -ATTATTAATAAA-ATTAA
1 TATTATTAATAAATATTAA
*
6953453 TATTATTTATAAAT
1 TATTATTAATAAAT
6953467 TTCATAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.19
18 15 0.56
19 7 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTATTAATAAATATTAA
Found at i:6953665 original size:33 final size:35
Alignment explanation
Indices: 6953628--6953701 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 35
6953618 TGTTTTAATA
*
6953628 AATAATTAATATAAT-TTATAATAATTTTATTT-T
1 AATAATTAATATAATATCATAATAATTTTATTTAT
*
6953661 AATAA--AATATAATAATCATAATATTTTTATTTAT
1 AATAATTAATATAAT-ATCATAATAATTTTATTTAT
6953695 AA-AATTA
1 AATAATTA
6953702 TAGATATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
31 8 0.24
33 22 0.65
34 3 0.09
35 1 0.03
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (35 bp):
AATAATTAATATAATATCATAATAATTTTATTTAT
Found at i:6953713 original size:29 final size:32
Alignment explanation
Indices: 6953591--6953716 Score: 102
Period size: 37 Copynumber: 3.9 Consensus size: 32
6953581 TAATAAATAA
* * *
6953591 TTAATAAAAT-TAATAATATATTATTCTTGTT
1 TTAATAAAATATAATAATATAATATTTTTATT
*
6953622 TTAAT-AAATAATTAATATAATTTATAATAATTTTATT
1 TTAATAAAAT-A-T-A-ATAA--TATAATATTTTTATT
6953659 TTAATAAAATATAATAATCATAATATTTTTA-T
1 TTAATAAAATATAATAAT-ATAATATTTTTATT
6953691 TT-ATAAAAT-T-ATAGATATAATATTTT
1 TTAATAAAATATAATA-ATATAATATTTT
6953717 AATAATAATA
Statistics
Matches: 80, Mismatches: 5, Indels: 22
0.75 0.05 0.21
Matches are distributed among these distances:
29 13 0.16
30 7 0.09
31 12 0.15
32 4 0.05
33 12 0.15
34 5 0.06
35 5 0.06
36 1 0.01
37 17 0.21
38 4 0.05
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (32 bp):
TTAATAAAATATAATAATATAATATTTTTATT
Found at i:6953724 original size:14 final size:14
Alignment explanation
Indices: 6953633--6953727 Score: 54
Period size: 14 Copynumber: 6.9 Consensus size: 14
6953623 TAATAAATAA
6953633 TTAAT-ATAAT-TT
1 TTAATAATAATATT
* **
6953645 ATAATAATTTTATT
1 TTAATAATAATATT
*
6953659 TTAATAA-AATATA
1 TTAATAATAATATT
* *
6953672 ATAATCATAATATTT
1 TTAATAATAATA-TT
* * *
6953687 TTATTTATAAAATT
1 TTAATAATAATATT
*
6953701 ATAGAT-ATAATATT
1 TTA-ATAATAATATT
6953715 TTAATAATAATAT
1 TTAATAATAATAT
6953728 GCCATAAATA
Statistics
Matches: 59, Mismatches: 18, Indels: 10
0.68 0.21 0.11
Matches are distributed among these distances:
12 4 0.07
13 13 0.22
14 32 0.54
15 10 0.17
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (14 bp):
TTAATAATAATATT
Found at i:6955166 original size:40 final size:40
Alignment explanation
Indices: 6955106--6955251 Score: 238
Period size: 40 Copynumber: 3.6 Consensus size: 40
6955096 GAGCTTCTTG
* *
6955106 TCTCGTATAGAGATAACTCCATTTATAATTTAATCTTTTA
1 TCTCTTATAGAGATAACTCCATTTATAATTTGATCTTTTA
*
6955146 TCTCTTATAGAGATAACTCCATTTATAATTTGATCTCTTA
1 TCTCTTATAGAGATAACTCCATTTATAATTTGATCTTTTA
* *
6955186 TCTCTTATAGAGATAACTCCATTTATACTATGATCTTTTA
1 TCTCTTATAGAGATAACTCCATTTATAATTTGATCTTTTA
*
6955226 TCTCTTATAGATATAACTCCATTTAT
1 TCTCTTATAGAGATAACTCCATTTAT
6955252 TTCTTTATAC
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.45
Consensus pattern (40 bp):
TCTCTTATAGAGATAACTCCATTTATAATTTGATCTTTTA
Found at i:6958510 original size:45 final size:45
Alignment explanation
Indices: 6958460--6958550 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
6958450 ATTGCAACAT
*
6958460 TAAACATGAAACTACACTCACCAAACTCTCTAGCTCATGGTGTCC
1 TAAACATGAAAATACACTCACCAAACTCTCTAGCTCATGGTGTCC
* *
6958505 TAAACATGAAAATACACTCACCGAACTCTCTGGCTCATGGTGTCC
1 TAAACATGAAAATACACTCACCAAACTCTCTAGCTCATGGTGTCC
6958550 T
1 T
6958551 GGATCACTAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (45 bp):
TAAACATGAAAATACACTCACCAAACTCTCTAGCTCATGGTGTCC
Found at i:6961234 original size:175 final size:173
Alignment explanation
Indices: 6960845--6961195 Score: 580
Period size: 175 Copynumber: 2.0 Consensus size: 173
6960835 ATACTTAAAT
* * *
6960845 TAAAG-AATAAAAGAACGGAAA-GTAAGAAGGTAAAAATTAGGGGTTAAGAGCTAAATATGTCCA
1 TAAAGAAACAAAAGAACGGAAATGTAAG-AGCTAAATATTAGGGGTTAAGAGCTAAATATGTCCA
6960908 TGGGTTAGAATAATATTAATATAGCAGAGGATTAGTAATGCAAATAAACCAAAATAAATAAGGAT
65 TGGGTTAGAATAATATTAATATAGCAGAGGATTAGTAATGCAAATAAACCAAAATAAATAAGGAT
6960973 TGTGACAACAATGCAAATTCACGCTTGAATAAGGAGTCTTAAGC
130 TGTGACAACAATGCAAATTCACGCTTGAATAAGGAGTCTTAAGC
* *
6961017 TAAAGAAATAAAAGAACGGAAATGTAAGAAGGTAAAATATTAGGGGTTAAGAGCTAAATATGTCC
1 TAAAGAAACAAAAGAACGGAAATGTAAG-AGCT-AAATATTAGGGGTTAAGAGCTAAATATGTCC
6961082 ATGGGTTAGAATAATTATTAATATAGTCAGAGGATTAGTAATGCAAATAAACCAAAATAAATAAA
64 ATGGGTTAGAATAA-TATTAATATAG-CAGAGGATTAGTAATGCAAATAAACCAAAATAAAT-AA
6961147 GGATTGTGACAACAATGCAAATTCACGCTTGAAATAAGGAGTCTTAAGC
126 GGATTGTGACAACAATGCAAATTCACGCTTG-AATAAGGAGTCTTAAGC
6961196 GTAATTAACC
Statistics
Matches: 171, Mismatches: 1, Indels: 7
0.96 0.01 0.04
Matches are distributed among these distances:
172 5 0.03
173 16 0.09
174 10 0.06
175 44 0.26
176 11 0.06
177 35 0.20
178 33 0.19
179 17 0.10
ACGTcount: A:0.46, C:0.09, G:0.21, T:0.24
Consensus pattern (173 bp):
TAAAGAAACAAAAGAACGGAAATGTAAGAGCTAAATATTAGGGGTTAAGAGCTAAATATGTCCAT
GGGTTAGAATAATATTAATATAGCAGAGGATTAGTAATGCAAATAAACCAAAATAAATAAGGATT
GTGACAACAATGCAAATTCACGCTTGAATAAGGAGTCTTAAGC
Found at i:6961687 original size:2 final size:2
Alignment explanation
Indices: 6961680--6961726 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
6961670 AAACCTTCCT
6961680 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6961722 TA TA T
1 TA TA T
6961727 GCATAGTTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6962466 original size:3 final size:3
Alignment explanation
Indices: 6962432--6962486 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
6962422 CCTGCAAATG
* * *
6962432 TAA TAAA TAA TAT TAA TAA AAA TAA CAA TAA TAA TAA TAA TATA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
6962479 TAA TAA TA
1 TAA TAA TA
6962487 TTTTTTAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6963138 original size:42 final size:41
Alignment explanation
Indices: 6963070--6963148 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 41
6963060 TGTTGTTGAA
6963070 TTGGATGAGTTCTTCTCCATTATGAACTTCTTCTGGAAATG
1 TTGGATGAGTTCTTCTCCATTATGAACTTCTTCTGGAAATG
6963111 TTGGAATGCAGTTCTTCT-CATTATGAACTTCTTCTGGA
1 TTGG-ATG-AGTTCTTCTCCATTATGAACTTCTTCTGGA
6963149 TGAACTTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
41 4 0.11
42 23 0.64
43 9 0.25
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.42
Consensus pattern (41 bp):
TTGGATGAGTTCTTCTCCATTATGAACTTCTTCTGGAAATG
Found at i:6963144 original size:17 final size:17
Alignment explanation
Indices: 6963122--6963198 Score: 52
Period size: 17 Copynumber: 4.4 Consensus size: 17
6963112 TGGAATGCAG
6963122 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
**
6963139 TTCTTCT--GGATGAAC
1 TTCTTCTCATTATGAAC
* *
6963154 TTTCTTCCTCGTTTAAATG-AG
1 -TTCTT-CTC-ATT--ATGAAC
6963175 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
6963192 TTCTTCT
1 TTCTTCT
6963199 TCACTGAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 16
0.66 0.10 0.24
Matches are distributed among these distances:
15 6 0.13
16 8 0.18
17 17 0.38
18 2 0.04
19 3 0.07
20 5 0.11
21 1 0.02
22 3 0.07
ACGTcount: A:0.19, C:0.22, G:0.10, T:0.48
Consensus pattern (17 bp):
TTCTTCTCATTATGAAC
Found at i:6963251 original size:40 final size:43
Alignment explanation
Indices: 6963170--6963254 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 43
6963160 CCTCGTTTAA
6963170 ATGAGTTCTTCTCATTATGAACTTCTTCTTCACTGAAAATGTTG
1 ATGAGTTCTTCTCATTATGAACTTCTTCTT-ACTGAAAATGTTG
*
6963214 ATGAGTTCTTCTCATTATGAAC-TCTTC-T-GTGAAAATGTTG
1 ATGAGTTCTTCTCATTATGAACTTCTTCTTACTGAAAATGTTG
6963254 A
1 A
6963255 ATCAAACCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
40 12 0.30
42 1 0.03
43 5 0.12
44 22 0.55
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.42
Consensus pattern (43 bp):
ATGAGTTCTTCTCATTATGAACTTCTTCTTACTGAAAATGTTG
Found at i:6963615 original size:136 final size:135
Alignment explanation
Indices: 6963386--6963719 Score: 520
Period size: 136 Copynumber: 2.5 Consensus size: 135
6963376 AGGAACAAAT
* * *
6963386 TCTTCTCATTATGAAC-T-TTCT--C-CTGTAGGACGAGTTCTTCTCATTATGAACTCT-TTTGG
1 TCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCATTGG
* * *
6963445 AAATATTAATCCCTCAAGTGAGGCGTCACTGATTCGAAATGTTGTGAATCGAGTGATAGGTCGAA
66 AAATATTAATCCCTCAAGTGAGGCGTCACTGATTCGAAATATCGTGAATCAAGTGATAGGTCGAA
6963510 CAAGC
131 CAAGC
6963515 TCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCAATTG
1 TCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTC-ATTG
*
6963580 GAAAT-TTCAATCCCTCAAGTGAGGTGTCACTGATTCGAAATATCGTGAATCAAGTGATAGGTCG
65 GAAATATT-AATCCCTCAAGTGAGGCGTCACTGATTCGAAATATCGTGAATCAAGTGATAGGTCG
6963644 AACAAGC
129 AACAAGC
*
6963651 TCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCCACTG
1 TCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCT-CATTG
6963716 GAAA
65 GAAA
6963720 CACTGATGTG
Statistics
Matches: 188, Mismatches: 8, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
129 16 0.09
130 1 0.01
131 4 0.02
133 1 0.01
134 30 0.16
135 2 0.01
136 133 0.71
137 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (135 bp):
TCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAACTCTCATTGG
AAATATTAATCCCTCAAGTGAGGCGTCACTGATTCGAAATATCGTGAATCAAGTGATAGGTCGAA
CAAGC
Found at i:6963825 original size:227 final size:227
Alignment explanation
Indices: 6963505--6963938 Score: 633
Period size: 227 Copynumber: 1.9 Consensus size: 227
6963495 GAGTGATAGG
*
6963505 TCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAA
1 TCGAACAAGCTCTTCCCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAA
* * * * *
6963570 CTCTCAATTGGAAATTTCAATCCCTCAAGTGAGGTGTCACTGATTCGAAATATCGTGAATCAAGT
66 CTCTCAACTGAAAATTTCAATCCCTCAAGCGAGGCGTCACTGATTCGAAATACCGTGAATCAAGT
*
6963635 GATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCAT
131 GATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCT-TATCGGATGAGTTCTTCTCAT
6963700 TATGAACTCTCCACTGGAAACACTGATGTGAGA
195 TATGAACTCTCCACTGGAAACACTGATGTGAGA
* **
6963733 TCGAACAAGTTCTTCCCATTATGAACTTCTTCTTTCTCAT-T-GGATGAGTTCTTCTCATTATGA
1 TCGAACAAGCTCTTCCCATTATGAACTTCTTCTCCCTC-TGTCGGATGAGTTCTTCTCATTATGA
* * * * **
6963796 ACTCTTC-ACTGAAAATGTT-GATTCCTCAAGCGAGGCGTCACTGATTCGAAATGCCTTGAATTG
65 ACTC-TCAACTGAAAAT-TTCAATCCCTCAAGCGAGGCGTCACTGATTCGAAATACCGTGAATCA
* * *
6963859 AGTGATGGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCTCTTATTGGATGAGTTCTTCTC
128 AGTGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTTATCGGATGAGTTCTTCTC
6963924 ATTATGAACTCTCCA
193 ATTATGAACTCTCCA
6963939 TTGAGAATGT
Statistics
Matches: 184, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
226 32 0.17
227 112 0.61
228 39 0.21
229 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (227 bp):
TCGAACAAGCTCTTCCCATTATGAACTTCTTCTCCCTCTGTCGGATGAGTTCTTCTCATTATGAA
CTCTCAACTGAAAATTTCAATCCCTCAAGCGAGGCGTCACTGATTCGAAATACCGTGAATCAAGT
GATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTTATCGGATGAGTTCTTCTCATT
ATGAACTCTCCACTGGAAACACTGATGTGAGA
Found at i:6964322 original size:15 final size:15
Alignment explanation
Indices: 6964302--6964345 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
6964292 TCAAATGAAA
6964302 ACTGTCTCAAGCAAG
1 ACTGTCTCAAGCAAG
* **
6964317 ACTGTCTTAAGGGAG
1 ACTGTCTCAAGCAAG
6964332 ACTGTCTCAAGCAA
1 ACTGTCTCAAGCAA
6964346 AAAGAAGTAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (15 bp):
ACTGTCTCAAGCAAG
Found at i:6964414 original size:38 final size:37
Alignment explanation
Indices: 6964356--6964475 Score: 127
Period size: 37 Copynumber: 3.2 Consensus size: 37
6964346 AAAGAAGTAG
*
6964356 GTTTTAAGAAAAACCATCTCAAGGGAGACAAAACTTT
1 GTTTCAAGAAAAACCATCTCAAGGGAGACAAAACTTT
* * * *
6964393 GTTTCAAGATAAAACCGTCTCAAGCGAGAC-GAA-GTT
1 GTTTCAAGA-AAAACCATCTCAAGGGAGACAAAACTTT
* * * *
6964429 GATTTTAAGAAAAACCATTTTAAGGGAGATAAAACTTT
1 G-TTTCAAGAAAAACCATCTCAAGGGAGACAAAACTTT
6964467 GTTTCAAGA
1 GTTTCAAGA
6964476 GAAATTGTCT
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
36 18 0.28
37 26 0.40
38 21 0.32
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (37 bp):
GTTTCAAGAAAAACCATCTCAAGGGAGACAAAACTTT
Found at i:6964499 original size:28 final size:30
Alignment explanation
Indices: 6964459--6964517 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
6964449 TAAGGGAGAT
* * *
6964459 AAAACTTTGTTT-CAAGAGAAATTGTCTCA
1 AAAACTTTGTTTCCAAAAGAAACTATCTCA
6964488 AAAAC-TTGTTTCCAAAAGAAACTATCTCA
1 AAAACTTTGTTTCCAAAAGAAACTATCTCA
6964517 A
1 A
6964518 GGGAGACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (30 bp):
AAAACTTTGTTTCCAAAAGAAACTATCTCA
Found at i:6964582 original size:66 final size:65
Alignment explanation
Indices: 6964450--6964619 Score: 225
Period size: 66 Copynumber: 2.6 Consensus size: 65
6964440 AAACCATTTT
* *
6964450 AAGGGAGATAAAACTTTGTTTCAAGAGAAATTGTCTCAAAAACTTGTTTCCAAAAGAAACTATCT
1 AAGGGAGACAAAA-TTTGTTTCAAGGGAAATTGTCTCAAAAACTTGTTTCCAAAAGAAACTATCT
6964515 C
65 C
* ** * *
6964516 AAGGGAGACAAAATTCGTTTCAAGGGAAA-TGTTCTCAAAATTTTGTGTTTCAAGAGAAACTATC
1 AAGGGAGACAAAATTTGTTTCAAGGGAAATTG-TCTCAAAAACTTGT-TTCCAAAAGAAACTATC
6964580 TC
64 TC
* *
6964582 AAGGGAGACAAAATTTGTTTCAAGGGAAACTATCTCAA
1 AAGGGAGACAAAATTTGTTTCAAGGGAAATTGTCTCAA
6964620 GCGAGATAAA
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
64 2 0.02
65 26 0.28
66 63 0.68
67 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (65 bp):
AAGGGAGACAAAATTTGTTTCAAGGGAAATTGTCTCAAAAACTTGTTTCCAAAAGAAACTATCTC
Found at i:6964604 original size:36 final size:36
Alignment explanation
Indices: 6964561--6964689 Score: 150
Period size: 39 Copynumber: 3.4 Consensus size: 36
6964551 CAAAATTTTG
* * *
6964561 TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGAAAAAATT
6964597 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATATT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGA-AAAA-ATT
* *
6964635 CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
1 -TGTTTCAAGGGAAACTATCTCAAGCGAGA-AAAA--ATT
*
6964675 TGTTTCAAGGAAAAC
1 TGTTTCAAGGGAAAC
6964690 CAATCTTGAG
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
36 27 0.33
37 3 0.04
38 3 0.04
39 46 0.57
40 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGAAAAAATT
Found at i:6964651 original size:39 final size:39
Alignment explanation
Indices: 6964552--6965158 Score: 535
Period size: 40 Copynumber: 15.3 Consensus size: 39
6964542 AAATGTTCTC
* * * * *
6964552 AAAATTTTGTGTTTCAA-GAGAAACTATCTCAAGGGAGAC
1 AAAATCTTCTGTTTCAAGGA-AAACAATCTCAAGCGAGAT
* *
6964591 AAAA--TT-TGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCAAGGAAAACAATCTCAAGCGAGAT
* * * *
6964627 AAAATATTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCAAGGAAAACAATCTCAAGCGAGAT
* **
6964666 AAAATCTTTTGTTTCAAGGAAAACCAATCTTGAGCGAGAT
1 AAAATCTTCTGTTTCAAGGAAAA-CAATCTCAAGCGAGAT
** *
6964706 AAAATCTTCTGTTTCAAGGAAAAGCAATCTTGAGTGAGAT
1 AAAATCTTCTGTTTCAAGGAAAA-CAATCTCAAGCGAGAT
* * *
6964746 AAAATCTTTTGTTTCAAGGAAAAACAATCTTGAA-TGAGAT
1 AAAATCTTCTGTTTCAAGG-AAAACAATC-TCAAGCGAGAT
** *
6964786 AAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGTGAGAT
1 AAAATCTTCTGTTTCAAGG-AAAACAATCTCAAGCGAGAT
* * * * *
6964826 AAAATCTTTTGTTTCAAGGAAAAATAATCTTGAA-TGAAAT
1 AAAATCTTCTGTTTCAAGG-AAAACAATC-TCAAGCGAGAT
* ** *
6964866 AAAATCTTCTGTTTCAAGGAAAAATAATCTTGAGTGAGAT
1 AAAATCTTCTGTTTCAAGG-AAAACAATCTCAAGCGAGAT
* * * *
6964906 AAAATCTTCTGTTTCAAGAAAAAACAATCTTGAA-TGAAAT
1 AAAATCTTCTGTTTCAAG-GAAAACAATC-TCAAGCGAGAT
* ** *
6964946 AAAATCTTTTGTTTCAAGGAAAAACAATCTTGAGTGAGAT
1 AAAATCTTCTGTTTCAAGG-AAAACAATCTCAAGCGAGAT
** *
6964986 AAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGTGAGAT
1 AAAATCTTCTGTTTCAAGG-AAAACAATCTCAAGCGAGAT
** *
6965026 AAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGTGAGAT
1 AAAATCTTCTGTTTCAAGG-AAAACAATCTCAAGCGAGAT
* ** *
6965066 AAAATCTTTTGTTTCAAGGAAAAACAATCTTGAGTGAGAT
1 AAAATCTTCTGTTTCAAGG-AAAACAATCTCAAGCGAGAT
** *
6965106 AAAATCTTCTGTTTCAAGGAAAAAGCAATCTTGAGTGAGAT
1 AAAATCTTCTGTTTCAAGG-AAAA-CAATCTCAAGCGAGAT
6965147 AAAATCTTCTGT
1 AAAATCTTCTGT
6965159 ATTAAATGAG
Statistics
Matches: 511, Mismatches: 42, Indels: 28
0.88 0.07 0.05
Matches are distributed among these distances:
36 29 0.06
37 3 0.01
38 2 0.00
39 58 0.11
40 381 0.75
41 38 0.07
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (39 bp):
AAAATCTTCTGTTTCAAGGAAAACAATCTCAAGCGAGAT
Found at i:6964709 original size:40 final size:40
Alignment explanation
Indices: 6964622--6965158 Score: 851
Period size: 40 Copynumber: 13.4 Consensus size: 40
6964612 TATCTCAAGC
* * * * ** *
6964622 GAGATAAAATATTCTGTTTCGAGG-GAAACTATCTCAAGC
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* * *
6964661 GAGATAAAATCTTTTGTTTCAAGGAAAACCAATCTTGAGC
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
6964701 GAGATAAAATCTTCTGTTTCAAGGAAAAGCAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
6964741 GAGATAAAATCTTTTGTTTCAAGGAAAAACAATCTTGAAT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
6964781 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* * *
6964821 GAGATAAAATCTTTTGTTTCAAGGAAAAATAATCTTGAAT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
6964861 GAAATAAAATCTTCTGTTTCAAGGAAAAATAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
6964901 GAGATAAAATCTTCTGTTTCAAGAAAAAACAATCTTGAAT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
6964941 GAAATAAAATCTTTTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
6964981 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
6965021 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
6965061 GAGATAAAATCTTTTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
6965101 GAGATAAAATCTTCTGTTTCAAGGAAAAAGCAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAA-CAATCTTGAGT
6965142 GAGATAAAATCTTCTGT
1 GAGATAAAATCTTCTGT
6965159 ATTAAATGAG
Statistics
Matches: 462, Mismatches: 34, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
39 21 0.05
40 413 0.89
41 28 0.06
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (40 bp):
GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
Found at i:6964855 original size:23 final size:23
Alignment explanation
Indices: 6964828--6964896 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 23
6964818 AGTGAGATAA
6964828 AATCTTTTGTTTCAAGGAAAAAT
1 AATCTTTTGTTTCAAGGAAAAAT
*
6964851 AATC--TTG----AATGAAATAA-
1 AATCTTTTGTTTCAAGGAAA-AAT
*
6964868 AATCTTCTGTTTCAAGGAAAAAT
1 AATCTTTTGTTTCAAGGAAAAAT
6964891 AATCTT
1 AATCTT
6964897 GAGTGAGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 16
0.65 0.06 0.30
Matches are distributed among these distances:
17 10 0.29
18 2 0.06
19 2 0.06
21 3 0.09
22 2 0.06
23 16 0.46
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (23 bp):
AATCTTTTGTTTCAAGGAAAAAT
Found at i:6965014 original size:23 final size:23
Alignment explanation
Indices: 6964988--6965056 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 23
6964978 AGTGAGATAA
6964988 AATCTTCTGTTTCAAGGAAAAAC
1 AATCTTCTGTTTCAAGGAAAAAC
** * *
6965011 AATC-T-TGAGT-GA-G-ATAA-
1 AATCTTCTGTTTCAAGGAAAAAC
6965028 AATCTTCTGTTTCAAGGAAAAAC
1 AATCTTCTGTTTCAAGGAAAAAC
6965051 AATCTT
1 AATCTT
6965057 GAGTGAGATA
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
17 4 0.12
18 4 0.12
19 4 0.12
20 2 0.06
21 4 0.12
22 4 0.12
23 10 0.31
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (23 bp):
AATCTTCTGTTTCAAGGAAAAAC
Found at i:6968050 original size:1 final size:1
Alignment explanation
Indices: 6968044--6968130 Score: 57
Period size: 1 Copynumber: 87.0 Consensus size: 1
6968034 ATTTAATTTC
* * * * * * * * * *
6968044 TTTTTTTTCTTTTTTTCTCTTTTTTTTCTCTTTTTTTTCTTTCTTTTTTCTTTCTTTTTTTCTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
6968109 TTTTCTTCTTTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTT
6968131 CTCTGATGGA
Statistics
Matches: 60, Mismatches: 26, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (1 bp):
T
Found at i:6968069 original size:20 final size:19
Alignment explanation
Indices: 6968044--6968130 Score: 102
Period size: 19 Copynumber: 4.2 Consensus size: 19
6968034 ATTTAATTTC
6968044 TTTTTTTTCTTTTTTTCTCT
1 TTTTTTTTCTTTTTTTCT-T
6968064 TTTTTTTCTCTTTTTTTTCTTTCT
1 TTTTTTT-TC-TTTTTTTC--T-T
6968088 TTTTTCTTTCTTTTTTTCTT
1 TTTTT-TTTCTTTTTTTCTT
*
6968108 TTTTTCTTCTTTTTTTCTT
1 TTTTTTTTCTTTTTTTCTT
6968127 TTTT
1 TTTT
6968131 CTCTGATGGA
Statistics
Matches: 61, Mismatches: 1, Indels: 11
0.84 0.01 0.15
Matches are distributed among these distances:
19 17 0.28
20 13 0.21
21 3 0.05
22 8 0.13
23 8 0.13
24 10 0.16
25 2 0.03
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTTTTTCTTTTTTTCTT
Found at i:6968124 original size:11 final size:10
Alignment explanation
Indices: 6968040--6968130 Score: 107
Period size: 11 Copynumber: 9.0 Consensus size: 10
6968030 TTTCATTTAA
6968040 TTTC-TTTTT
1 TTTCTTTTTT
6968049 TTTCTTTTTT
1 TTTCTTTTTT
*
6968059 TCTC-TTTTT
1 TTTCTTTTTT
6968068 TTTCTCTTTTT
1 TTTCT-TTTTT
6968079 TTTCTTTCTTT
1 TTTCTTT-TTT
6968090 TTTCTTTCTTT
1 TTTCTTT-TTT
*
6968101 TTT-TCTTTT
1 TTTCTTTTTT
6968110 TTTCTTCTTTT
1 TTTCTT-TTTT
6968121 TTTCTTTTTT
1 TTTCTTTTTT
6968131 CTCTGATGGA
Statistics
Matches: 72, Mismatches: 4, Indels: 11
0.83 0.05 0.13
Matches are distributed among these distances:
9 18 0.25
10 17 0.24
11 37 0.51
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:6968132 original size:34 final size:34
Alignment explanation
Indices: 6968040--6968132 Score: 100
Period size: 34 Copynumber: 2.6 Consensus size: 34
6968030 TTTCATTTAA
*
6968040 TTTCTT-TTTTTTCTTTTTTTCTCTTTTTTTTCTCTT
1 TTTCTTCTTTTTT-TTTTTTTCT-TTTTTTCTCT-TT
* *
6968076 TTTTTTCTTTCTTTTTTCTTTCTTTTTTTCT-TTT
1 TTTCTTCTTT-TTTTTTTTTTCTTTTTTTCTCTTT
6968110 TTTCTTCTTTTTTTCTTTTTTCT
1 TTTCTTCTTTTTTT-TTTTTTCT
6968133 CTGATGGATG
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
33 4 0.08
34 18 0.37
35 1 0.02
36 12 0.24
37 11 0.22
38 3 0.06
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (34 bp):
TTTCTTCTTTTTTTTTTTTTCTTTTTTTCTCTTT
Found at i:6971655 original size:20 final size:19
Alignment explanation
Indices: 6971632--6971686 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
6971622 GATGATTATG
6971632 CAAATGCGAAGATGC-AAATA
1 CAAATGC-AA-ATGCAAAATA
6971652 CAAATGCAAATGCGAAAATA
1 CAAATGCAAATGC-AAAATA
*
6971672 CAAATACAAATGCAA
1 CAAATGCAAATGCAA
6971687 CATAGTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
18 4 0.12
19 4 0.12
20 24 0.75
ACGTcount: A:0.55, C:0.16, G:0.15, T:0.15
Consensus pattern (19 bp):
CAAATGCAAATGCAAAATA
Found at i:6971702 original size:26 final size:26
Alignment explanation
Indices: 6971629--6971686 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
6971619 CATGATGATT
* *
6971629 ATGCAAATGCGAAGATGCAAATACAA
1 ATGCAAATGCGAAAATACAAATACAA
6971655 ATGCAAATGCGAAAATACAAATACAA
1 ATGCAAATGCGAAAATACAAATACAA
6971681 ATGCAA
1 ATGCAA
6971687 CATAGTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.16
Consensus pattern (26 bp):
ATGCAAATGCGAAAATACAAATACAA
Found at i:6973294 original size:18 final size:19
Alignment explanation
Indices: 6973271--6973312 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
6973261 GTAGTATTTA
6973271 AAATATTAT-TAAAACAAT
1 AAATATTATATAAAACAAT
*
6973289 AAATATTATATAAATCAAT
1 AAATATTATATAAAACAAT
6973308 AAATA
1 AAATA
6973313 ATTAATTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATATTATATAAAACAAT
Found at i:6974547 original size:2 final size:2
Alignment explanation
Indices: 6974529--6974586 Score: 86
Period size: 2 Copynumber: 30.5 Consensus size: 2
6974519 AAACCTTCCT
*
6974529 TA TA T- TA T- TA T- TA TA TA TA TA TA TA TA TG TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6974568 TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
6974587 GCATAGTTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
1 3 0.06
2 48 0.94
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (2 bp):
TA
Found at i:6975326 original size:3 final size:3
Alignment explanation
Indices: 6975292--6975346 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
6975282 CCTGCAAATG
* * *
6975292 TAA TAAA TAA TAT TAA TAA AAA TAA CAA TAA TAA TAA TAA TATA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
6975339 TAA TAA TA
1 TAA TAA TA
6975347 TTTTTTAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6976193 original size:25 final size:25
Alignment explanation
Indices: 6976165--6976217 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
6976155 ATAACAATAT
6976165 TAAAAAATATTAT-ATTTTATTAGAA
1 TAAAAAATATTATAATTTTATTA-AA
6976190 TAAAAAATATTATAAATTTTATTAAA
1 TAAAAAATATTAT-AATTTTATTAAA
6976216 TA
1 TA
6976218 TATATTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 13 0.50
26 4 0.15
27 9 0.35
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
TAAAAAATATTATAATTTTATTAAA
Found at i:6976299 original size:15 final size:16
Alignment explanation
Indices: 6976279--6976308 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6976269 ATAATATTTT
6976279 ATTATAAT-TTTAAAA
1 ATTATAATATTTAAAA
6976294 ATTATAATATTTAAA
1 ATTATAATATTTAAA
6976309 TATTTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTATAATATTTAAAA
Found at i:6976338 original size:24 final size:24
Alignment explanation
Indices: 6976285--6976349 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
6976275 TTTTATTATA
*
6976285 ATTTTAAAAATTATAATATTTAAAT
1 ATTTTAAAAATTATAATA-TAAAAT
6976310 A-TTTAAAAATTATTAATA-AAAAT
1 ATTTTAAAAATTA-TAATATAAAAT
*
6976333 ATTTTAAATATT-TAATA
1 ATTTTAAAAATTATAATA
6976350 ATTCAATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
22 5 0.14
23 5 0.14
24 20 0.56
25 6 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTTTAAAAATTATAATATAAAAT
Found at i:6976360 original size:30 final size:32
Alignment explanation
Indices: 6976299--6976368 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 32
6976289 TAAAAATTAT
*
6976299 AATA-TTTAAATATTTAAAAATTATTAATAAA
1 AATATTTTAAATATTTAAAAATTATCAATAAA
*
6976330 AATATTTTAAATATTTAATAA-T-TCAATAAA
1 AATATTTTAAATATTTAAAAATTATCAATAAA
*
6976360 ATTATTTTA
1 AATATTTTA
6976369 TGAAAATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 15 0.43
31 5 0.14
32 15 0.43
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (32 bp):
AATATTTTAAATATTTAAAAATTATCAATAAA
Found at i:6976494 original size:24 final size:24
Alignment explanation
Indices: 6976459--6976511 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
6976449 TAGTATACTT
6976459 AAATATATTATTATAAAATTAAAA
1 AAATATATTATTATAAAATTAAAA
** *
6976483 AAATAT-TGTATTATATCATTAAAT
1 AAATATAT-TATTATAAAATTAAAA
6976507 AAATA
1 AAATA
6976512 CTAATTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
AAATATATTATTATAAAATTAAAA
Found at i:6979614 original size:26 final size:26
Alignment explanation
Indices: 6979578--6979629 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
6979568 CGGAGCGATT
*
6979578 CCTAGTAACAACCCATCAATTCAAAA
1 CCTAGTAACAACCCATCAAGTCAAAA
6979604 CCTAGTAACAACCCATCAAGTCAAAA
1 CCTAGTAACAACCCATCAAGTCAAAA
6979630 AGAATAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.46, C:0.31, G:0.06, T:0.17
Consensus pattern (26 bp):
CCTAGTAACAACCCATCAAGTCAAAA
Found at i:6982028 original size:2 final size:2
Alignment explanation
Indices: 6982017--6982050 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
6982007 TTAGATACAT
6982017 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6982051 TAATATAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6982173 original size:12 final size:12
Alignment explanation
Indices: 6982129--6982167 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
6982119 AACCGAAAAA
*
6982129 ATATAAATATAA
1 ATATAAATATAT
*
6982141 ATAAAAATATAT
1 ATATAAATATAT
*
6982153 ATATATATATAT
1 ATATAAATATAT
6982165 ATA
1 ATA
6982168 ATTATAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATATAAATATAT
Found at i:6982329 original size:2 final size:2
Alignment explanation
Indices: 6982270--6982318 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
6982260 ACTTGGAATA
6982270 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6982312 AT AT AT A
1 AT AT AT A
6982319 ATAGGTATAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6983930 original size:30 final size:29
Alignment explanation
Indices: 6983874--6983952 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 29
6983864 GAGGCAAAAC
*
6983874 TTTGTTTCAAGAGAAAC-ATATTCAAAGGT
1 TTTGTTTCAAGAGAAACTGTATTCAAA-GT
* *
6983903 TTTGTTTCAAGGGAAACTGTTTTCAAAGT
1 TTTGTTTCAAGAGAAACTGTATTCAAAGT
6983932 TTATGTTTCAAGAGAAACTGT
1 TT-TGTTTCAAGAGAAACTGT
6983953 CTCAAGGGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 20 0.45
30 24 0.55
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (29 bp):
TTTGTTTCAAGAGAAACTGTATTCAAAGT
Found at i:6984195 original size:37 final size:36
Alignment explanation
Indices: 6984137--6984421 Score: 133
Period size: 37 Copynumber: 8.1 Consensus size: 36
6984127 TCAATGTTTA
* * *
6984137 TGTTTCAAGAGAAATTGTCTCAAAGGAGACAAAATTT
1 TGTTTCAAGGGAAACTATCTC-AAGGAGACAAAATTT
6984174 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTATCTCAAG-GAGACAAAATTT
** * * *
6984210 CATTTCAAGGGAAA-TGTTTTCAA--TG------TTT
1 TGTTTCAAGGGAAACT-ATCTCAAGGAGACAAAATTT
* * *
6984238 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACGAAATTT
1 -TGTTTCAAGGGAAACTATCTCAA-GGAGACAAAATTT
6984276 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTATCTCAAG-GAGACAAAATTT
** * * *
6984312 CATTTCAAGGGAAA-TGTTTTCAA--TG------TTT
1 TGTTTCAAGGGAAACT-ATCTCAAGGAGACAAAATTT
* *
6984340 ATGTTTCAAGAGAAACTGTCTCAATGGAGACAAAATTTT
1 -TGTTTCAAGGGAAACTATCTCAA-GGAGACAAAA-TTT
* * *
6984379 CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCT
1 -TGTTTCAAGGGAAACTATCTCAAG-GAGACAAAATTT
6984417 TGTTT
1 TGTTT
6984422 TAAGAAAAAC
Statistics
Matches: 184, Mismatches: 34, Indels: 60
0.66 0.12 0.22
Matches are distributed among these distances:
28 4 0.02
29 32 0.17
30 2 0.01
32 2 0.01
33 2 0.01
35 2 0.01
36 42 0.23
37 61 0.33
38 6 0.03
39 31 0.17
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTATCTCAAGGAGACAAAATTT
Found at i:6984225 original size:102 final size:102
Alignment explanation
Indices: 6983907--6984414 Score: 849
Period size: 102 Copynumber: 5.0 Consensus size: 102
6983897 AAAGGTTTTG
*
6983907 TTTCAAGGGAAACTGTTTTCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TT
1 TTTCAAGGGAAA-TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
*
6983971 TGTTTCAAGGGAAACTATCTCAAGACAGACAAAATTCA
65 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
** *
6984009 TTTCAAGGGAAACATTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGGGAGACAAAA-TTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
*
6984073 ATTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
66 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
* * *
6984110 TTTCAAGGAAAATGTTTTCAATGTTTATGTTTCAAGAGAAATTGTCTCAAAGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
6984175 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
66 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
*
6984212 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACGAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
6984277 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
66 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
*
6984314 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAATGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTT
* * *
6984379 CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAAT
65 -TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAAT
6984415 CTTGTTTTAA
Statistics
Matches: 381, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
101 138 0.36
102 208 0.55
103 3 0.01
104 32 0.08
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (102 bp):
TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
Found at i:6984502 original size:72 final size:72
Alignment explanation
Indices: 6984397--6984773 Score: 556
Period size: 72 Copynumber: 5.2 Consensus size: 72
6984387 AGGGAAACTA
* * * *
6984397 TCTCAAGCGAGATAAAATCTTGTTTTAAGAAAAACAATCTTGAGGGAAATAAATCTTCTTTCGAG
1 TCTCAAGTGAGACAAAGTC-TGTTTTAAGAAAAACAATCTTGAGGGAAATAAATCTTCTTTCAAG
*
6984462 TAAAATAG
65 TAAAACAG
6984470 TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
1 TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
6984535 AAAACAG
66 AAAACAG
* * **
6984542 TCTCAAGTGAGACAAGGTATGTTTTAAGAATGACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
1 TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
*
6984607 AGAACAG
66 AAAACAG
* * * * *
6984614 TCTCAAATGAGACAAGGTTTGTTCTAAGAAAAACAATCTTGAGGGAAATAAATCCTCTTTCAAGT
1 TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
6984679 AAAACAG
66 AAAACAG
* ** ** *
6984686 TCTCAAGTGAGACAAGGTCTGTTTTAAGAATGACAATCTCAAGGGAAATAAATATTCTTTCAAGT
1 TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
6984751 AAAACAG
66 AAAACAG
6984758 TCTCAAGTGAGACAAA
1 TCTCAAGTGAGACAAA
6984774 TCATCTGTAT
Statistics
Matches: 277, Mismatches: 27, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
72 261 0.94
73 16 0.06
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (72 bp):
TCTCAAGTGAGACAAAGTCTGTTTTAAGAAAAACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
AAAACAG
Found at i:6986257 original size:95 final size:95
Alignment explanation
Indices: 6986092--6986284 Score: 289
Period size: 95 Copynumber: 2.0 Consensus size: 95
6986082 CATTGTATAG
* * *
6986092 ATATTATAATTACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGTTTTTAACCAATT
1 ATATTATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCAGGGTGTTTAACCAATT
* *
6986157 TCTCTAGAGGGACAA-CTCAAGCTTTATTGT
66 GCTCTAGAGGGA-AAGCTCAAGATTTATTGT
* * *
6986187 ATATTATAATCAGCTTTATCAGGCTAGCTGAATCTTATCCATAAAGTCAGGGTGTTTAACCAATT
1 ATATTATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCAGGGTGTTTAACCAATT
*
6986252 GCTCTAGAGGGAAAGTTCAAGATTTATTGT
66 GCTCTAGAGGGAAAGCTCAAGATTTATTGT
6986282 ATA
1 ATA
6986285 CATAATATTA
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
94 2 0.02
95 86 0.98
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (95 bp):
ATATTATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCAGGGTGTTTAACCAATT
GCTCTAGAGGGAAAGCTCAAGATTTATTGT
Found at i:6989054 original size:30 final size:29
Alignment explanation
Indices: 6988998--6989056 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
6988988 AACAACCCAT
* *
6988998 CAATTTTCCAAAAATGTCAAATTGATCCC
1 CAATTTTCAAAAAATGTCAAAATGATCCC
6989027 CAATTATTCAAAAAAT-TACAAAATGATCCC
1 CAATT-TTCAAAAAATGT-CAAAATGATCCC
6989057 TAAATTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.29
Consensus pattern (29 bp):
CAATTTTCAAAAAATGTCAAAATGATCCC
Found at i:6991350 original size:24 final size:26
Alignment explanation
Indices: 6991313--6991370 Score: 93
Period size: 24 Copynumber: 2.3 Consensus size: 26
6991303 CTAAGACATA
*
6991313 AAATTAAATAAAAAAATAGATAGAAT
1 AAATAAAATAAAAAAATAGATAGAAT
6991339 -AATAAAAT-AAAAAATAGATAGAAT
1 AAATAAAATAAAAAAATAGATAGAAT
6991363 AAATAAAA
1 AAATAAAA
6991371 CGAAATAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 16 0.53
25 14 0.47
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (26 bp):
AAATAAAATAAAAAAATAGATAGAAT
Found at i:6991384 original size:22 final size:23
Alignment explanation
Indices: 6991317--6991397 Score: 89
Period size: 22 Copynumber: 3.6 Consensus size: 23
6991307 GACATAAAAT
6991317 TAAAT-AAAA-AAATAGATAGAA
1 TAAATAAAAAGAAATAGATAGAA
*
6991338 T-AATAAAATAAAAAATAGATAGAA
1 TAAAT-AAA-AAGAAATAGATAGAA
*
6991362 TAAATAAAACGAAATA-ATAGAA
1 TAAATAAAAAGAAATAGATAGAA
*
6991384 TGAATAAAAAGAAA
1 TAAATAAAAAGAAA
6991398 ACAAAACAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
20 3 0.06
21 1 0.02
22 20 0.39
23 8 0.16
24 16 0.31
25 3 0.06
ACGTcount: A:0.70, C:0.01, G:0.10, T:0.19
Consensus pattern (23 bp):
TAAATAAAAAGAAATAGATAGAA
Found at i:6991889 original size:13 final size:12
Alignment explanation
Indices: 6991873--6991903 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
6991863 ATACACATAC
6991873 ATAATAAAAAAT
1 ATAATAAAAAAT
6991885 AATAATAAAAAAT
1 -ATAATAAAAAAT
6991898 ATAATA
1 ATAATA
6991904 GTATAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
ATAATAAAAAAT
Found at i:6991968 original size:2 final size:2
Alignment explanation
Indices: 6991961--6991985 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6991951 AAATAATAAA
6991961 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
6991986 AAAGGGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6993081 original size:14 final size:14
Alignment explanation
Indices: 6993064--6993094 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
6993054 ATATAGCCGA
6993064 ATATATTATATAAT
1 ATATATTATATAAT
6993078 ATATATTATATAAT
1 ATATATTATATAAT
6993092 ATA
1 ATA
6993095 GTAACGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATATATTATATAAT
Found at i:6994211 original size:105 final size:105
Alignment explanation
Indices: 6993569--6994621 Score: 1395
Period size: 106 Copynumber: 10.0 Consensus size: 105
6993559 ATATTGTTCC
* * * ** * *
6993569 GAGTCCAATATCCTCCGCCGTGAAGTTGAAATTGG-TCCTGGACCTGGGAAATTATTTGTTGACA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCT-CTGAAATTGGGAAGTT-GTTGTTGACA
* * * * * * * *
6993633 GCCAGCCGCCCCTTCGCCGTGAAGTTGAGCTTGTGCTGTCTC
64 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
6993675 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTG-TTGTTGACAA
*
6993740 CCAGCGGTCCCTCCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
6993781 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTG-TTGTTGACAA
*
6993846 CCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
6993887 GAGTCCAATATCATTCGC--T----TTGAAATTGGCTCTGAAATTGGGAGGTTGTTGTTGACAAC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAAC
* * *
6993946 CAGTGGTCCTTTCATCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
6993986 GAGTCCAATATCCTTCGTTGTGAAGTTAAAATCGGCTCTGAAATTGAGAAGTTATTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTT-GTTGTTGACAA
*
6994051 CCAGCGTTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
6994092 GAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTAAAATTGGGAGGTTGTTGTTGAAAAC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAAC
*
6994157 CAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
6994197 GAGTCCAATATCCTTCG-TCGTGAAGTTGAAATTGGCTCTGAAATTGGGAGGTTGTTGTTGACAA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAA
* * *
6994261 CCAGCGATCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTA
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
6994302 GAGTCCAATATCCATCGCTGTGAAGTTGAAATTGGATCTGAAATTGAGAGGTTGTTATTGACAAC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAAC
*
6994367 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTA
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* ***
6994407 GAGTCCAATATCCTTCGCTGTGAAGTCGTCCTTTGGCTCTGAAATTGGGAAGTTGTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTG-AAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAA
* * * * *
6994472 CTAGCCGTCCTTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT-G
* * * *
6994514 GA-TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTGTTATTGACAAC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAAC
* * * *
6994578 CAGCCGTCCCTTCATCGTGAAGTTGAACTTGTGTTGTCTT
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
6994618 GAGT
1 GAGT
6994622 GGCATGATAT
Statistics
Matches: 842, Mismatches: 91, Indels: 29
0.88 0.09 0.03
Matches are distributed among these distances:
99 65 0.08
100 27 0.03
101 1 0.00
104 4 0.00
105 357 0.42
106 385 0.46
107 3 0.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:6994326 original size:316 final size:314
Alignment explanation
Indices: 6993569--6994621 Score: 1438
Period size: 316 Copynumber: 3.3 Consensus size: 314
6993559 ATATTGTTCC
* * ** *
6993569 GAGTCCAATATCCTCCGCCGTGAAGTTGAAATTGG-TCCTGGACCTGGGAAATTATTTGTTGACA
1 GAGTCCAATATCCTTCG-CGTGAAGTTGAAATTGGCT-CTGAAATTGGGAAATT-GTTGTTGACA
* * ** * * * *
6993633 GCCAGCCGCCCCTTCGCCGTGAAGTTGAGCTTGTGCTGTCTCGAGTCCAATATCCTTCGCTGTGA
63 ACCAGCCGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTAGAGTCCAATATCCTTCGCTGTGA
* * *
6993698 AGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTCCGTCGTGAAG
128 AGTTGAAATTGGCTCTGAAATTGAGAAGTT-TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAG
* *
6993763 TTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGA
192 TTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGG
*
6993828 GAAGTTGTTTGTTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTG
257 GAAGTTG-TTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* **
6993887 GAGTCCAATATCATTCGC-T----TTGAAATTGGCTCTGAAATTGGGAGGTTGTTGTTGACAACC
1 GAGTCCAATATCCTTCGCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTGTTGACAACC
** * * *
6993947 AGTGGTCCTTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
66 AGCCGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTAGAGTCCAATATCCTTCGCTGTGAAGT
* * * *
6994012 TAAAATCGGCTCTGAAATTGAGAAGTTATTTGTTGACAACCAGCGTTCCCTTCGTCGTGAAGTTG
131 TGAAATTGGCTCTGAAATTGAGAAGTT-TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
* * *
6994077 AACTTGCGTTGTCTGGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTAAAATTGGGAG
195 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA
* *
6994142 GTTGTTGTTGAAAACCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTG
260 GTTGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
**
6994197 GAGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAGGTTGTTGTTGACAAC
1 GAGTCCAATATCCTTCG-CGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTGTTGACAAC
*
6994262 CAG-CGATCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTAGAGTCCAATATCCATCGCTGTGAA
65 CAGCCG-TCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTAGAGTCCAATATCCTTCGCTGTGAA
* * *
6994326 GTTGAAATTGGATCTGAAATTGAGAGGTTGTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
129 GTTGAAATTGGCTCTGAAATTGAGAAGTTTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
* * ***
6994391 GAACTTGCGTTGTCTAGAGTCCAATATCCTTCGCTGTGAAGTCGTCCTTTGGCTCTGAAATTGGG
194 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTG-AAATTGGCTCTGAAATTGGG
* * * * *
6994456 AAGTTGTTGTTGACAACTAGCCGTCCTTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
258 AAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT-G
* * *
6994514 GA-TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTGTTATTGACAAC
1 GAGTCCAATATCCTTCGC-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTGTTGACAAC
* *
6994578 CAGCCGTCCCTTCATCGTGAAGTTGAACTTGTGTTGTCTTGAGT
65 CAGCCGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTAGAGT
6994622 GGCATGATAT
Statistics
Matches: 652, Mismatches: 71, Indels: 26
0.87 0.09 0.03
Matches are distributed among these distances:
310 64 0.10
311 187 0.29
312 22 0.03
313 1 0.00
315 76 0.12
316 281 0.43
317 6 0.01
318 15 0.02
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (314 bp):
GAGTCCAATATCCTTCGCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTGTTGACAACC
AGCCGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTAGAGTCCAATATCCTTCGCTGTGAAGT
TGAAATTGGCTCTGAAATTGAGAAGTTTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
ACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG
TTGTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:7006034 original size:25 final size:25
Alignment explanation
Indices: 7005996--7006077 Score: 98
Period size: 25 Copynumber: 3.3 Consensus size: 25
7005986 ACATAAAATT
7005996 AAAT-AAAAAATAGATAGAATAAAA
1 AAATAAAAAAATAGATAGAATAAAA
7006020 AAATAAAAAAATAGATAGAATAAATA
1 AAATAAAAAAATAGATAGAATAAA-A
** *
7006046 AAACGAAATAATAGA-ATGAAT-AAA
1 AAATAAAAAAATAGATA-GAATAAAA
7006070 AAATAAAA
1 AAATAAAA
7006078 CAAAACAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
24 11 0.22
25 22 0.44
26 17 0.34
ACGTcount: A:0.73, C:0.01, G:0.09, T:0.17
Consensus pattern (25 bp):
AAATAAAAAAATAGATAGAATAAAA
Found at i:7006466 original size:2 final size:2
Alignment explanation
Indices: 7006461--7006519 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
7006451 AAAAGTAGAA
7006461 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7006503 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
7006520 ACGTACATAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7008180 original size:8 final size:8
Alignment explanation
Indices: 7008167--7008194 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7008157 TGAAAAGGGG
7008167 AGACTTTT
1 AGACTTTT
7008175 AGACTTTT
1 AGACTTTT
7008183 AGACTTTT
1 AGACTTTT
7008191 AGAC
1 AGAC
7008195 ATCCACCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (8 bp):
AGACTTTT
Found at i:7015502 original size:10 final size:10
Alignment explanation
Indices: 7015487--7015511 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7015477 CCAACACTTT
7015487 AAAAAAGAAA
1 AAAAAAGAAA
7015497 AAAAAAGAAA
1 AAAAAAGAAA
7015507 AAAAA
1 AAAAA
7015512 TAAAGAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:7019777 original size:14 final size:13
Alignment explanation
Indices: 7019730--7019779 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 13
7019720 GGATTAAGAA
7019730 AAAAATAAAAAAT
1 AAAAATAAAAAAT
7019743 AATAAAGTAAAGAAAT
1 AA-AAA-TAAA-AAAT
*
7019759 TAAAATAAAAATAT
1 AAAAATAAAAA-AT
7019773 AAAAATA
1 AAAAATA
7019780 TACGTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 7 0.23
16 5 0.16
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:7022566 original size:11 final size:11
Alignment explanation
Indices: 7022534--7022568 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
7022524 GATTAAATGG
*
7022534 ACTCGACTCGA
1 ACTCGACTCAA
7022545 ACTCGAGCTCAA
1 ACTCGA-CTCAA
7022557 ACTCGACTCAA
1 ACTCGACTCAA
7022568 A
1 A
7022569 TTCTTAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.34, C:0.34, G:0.14, T:0.17
Consensus pattern (11 bp):
ACTCGACTCAA
Found at i:7023984 original size:2 final size:2
Alignment explanation
Indices: 7023977--7024006 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7023967 ATTTACAATA
7023977 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7024007 CATGTTTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7024744 original size:35 final size:35
Alignment explanation
Indices: 7024700--7024766 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
7024690 ATAAGAAATA
7024700 TTTTAAAATTATGGGAGGAGATTTAATTAAGAGTT
1 TTTTAAAATTATGGGAGGAGATTTAATTAAGAGTT
*
7024735 TTTTTAAATTATGGGAGGAGATTTAATTAAGA
1 TTTTAAAATTATGGGAGGAGATTTAATTAAGA
7024767 ACATTAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.40
Consensus pattern (35 bp):
TTTTAAAATTATGGGAGGAGATTTAATTAAGAGTT
Found at i:7024779 original size:35 final size:35
Alignment explanation
Indices: 7024704--7024779 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
7024694 GAAATATTTT
*** **
7024704 AAAATTATGGGAGGAGATTTAATTAAGAGTTTTTT
1 AAAATTATGGGAGGAGATTTAATTAAGAACATTAA
*
7024739 TAAATTATGGGAGGAGATTTAATTAAGAACATTAA
1 AAAATTATGGGAGGAGATTTAATTAAGAACATTAA
7024774 AAAATT
1 AAAATT
7024780 TTAATGTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.43, C:0.01, G:0.20, T:0.36
Consensus pattern (35 bp):
AAAATTATGGGAGGAGATTTAATTAAGAACATTAA
Found at i:7026759 original size:42 final size:42
Alignment explanation
Indices: 7026695--7026776 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
7026685 CAATGTCGAG
7026695 ACATACTTATACAAATGTTTTTAGACTATTGACAACAAATAA
1 ACATACTTATACAAATGTTTTTAGACTATTGACAACAAATAA
* * *
7026737 ACATGCTTATGCAAATGTTTTTATACTATTGACAACAAAT
1 ACATACTTATACAAATGTTTTTAGACTATTGACAACAAAT
7026777 GTACACTTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (42 bp):
ACATACTTATACAAATGTTTTTAGACTATTGACAACAAATAA
Found at i:7030005 original size:20 final size:20
Alignment explanation
Indices: 7029982--7030028 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
7029972 CAAGCAGAAT
*
7029982 CGAACTGAGTTGACCCGACC
1 CGAACTAAGTTGACCCGACC
* *
7030002 CGAACCAAGTTGACCTGACC
1 CGAACTAAGTTGACCCGACC
*
7030022 TGAACTA
1 CGAACTA
7030029 TTAACCGGTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.17
Consensus pattern (20 bp):
CGAACTAAGTTGACCCGACC
Found at i:7030948 original size:31 final size:31
Alignment explanation
Indices: 7030807--7030937 Score: 208
Period size: 31 Copynumber: 4.2 Consensus size: 31
7030797 GCGACCCTTA
** * *
7030807 GGTAGGCCCTACGGACCCGAGATCTTTCTTG
1 GGTAGGCCCTGTGGCCCCGAGATCTTTCTGG
7030838 GGTAGGCCCTGTGGCCCCGAGATCTTTCTGG
1 GGTAGGCCCTGTGGCCCCGAGATCTTTCTGG
* *
7030869 GGTAGGCCCTGTGGCCCTGAGATCTTTCTAG
1 GGTAGGCCCTGTGGCCCCGAGATCTTTCTGG
7030900 GGTAGGCCCTGTGGCCCCGAGATCTTTCTGG
1 GGTAGGCCCTGTGGCCCCGAGATCTTTCTGG
7030931 GGTAGGC
1 GGTAGGC
7030938 TCTCAGGCCC
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 92 1.00
ACGTcount: A:0.12, C:0.27, G:0.34, T:0.26
Consensus pattern (31 bp):
GGTAGGCCCTGTGGCCCCGAGATCTTTCTGG
Found at i:7032123 original size:131 final size:131
Alignment explanation
Indices: 7031879--7032246 Score: 522
Period size: 131 Copynumber: 2.8 Consensus size: 131
7031869 ATAAATCTAA
* * * *
7031879 GAGAGAAAATGATAATATCTAATTATTTCCGATCGAGAATAAATGATCTCTCATGCCTTAAAACA
1 GAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
* *
7031944 ATCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTACGTCTTAAAATTCAATATTGA-T
66 ATCATTTATTACTCCAATCGAAATAAAGAGATATCACTATTACGTCTTAAAAATCAATATTGACT
7032008 T
131 T
* * * * *
7032009 CGAGTGTAAACGATAATATTTAATGATTTCCAATCGATAATAAATGACCTCTCATGCCTTAAAGC
1 -GAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGC
* * * * *
7032074 AGTCATCTATAACTCCAATTGAAATAAAGAGATATCACTATTATGTCTTAAAAATCAATATTGAC
65 AATCATTTATTACTCCAATCGAAATAAAGAGATATCACTATTACGTCTTAAAAATCAATATTGAC
7032139 TT
130 TT
7032141 GAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
1 GAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
* * * * * *
7032206 TTCATTTATTACTTCAACCGAAACAAAAAGATATTACTATT
66 ATCATTTATTACTCCAATCGAAATAAAGAGATATCACTATT
7032247 TTCAATAACG
Statistics
Matches: 206, Mismatches: 30, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
131 204 0.99
132 2 0.01
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (131 bp):
GAGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
ATCATTTATTACTCCAATCGAAATAAAGAGATATCACTATTACGTCTTAAAAATCAATATTGACT
T
Found at i:7033035 original size:23 final size:23
Alignment explanation
Indices: 7033002--7033045 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7032992 GTGCATACGT
*
7033002 TGCATCAATAGTTGGGAGATTCC
1 TGCATCAATAGCTGGGAGATTCC
*
7033025 TGCATCCATAGCTGGGAGATT
1 TGCATCAATAGCTGGGAGATT
7033046 GCAGCCAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (23 bp):
TGCATCAATAGCTGGGAGATTCC
Found at i:7033333 original size:15 final size:15
Alignment explanation
Indices: 7033315--7033346 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7033305 TACCGAGAGA
7033315 AAGAAAAGGAAGAAG
1 AAGAAAAGGAAGAAG
7033330 AAGAAAAGGAAGAAG
1 AAGAAAAGGAAGAAG
7033345 AA
1 AA
7033347 AAGAAGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (15 bp):
AAGAAAAGGAAGAAG
Found at i:7033341 original size:12 final size:11
Alignment explanation
Indices: 7033324--7033353 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
7033314 AAAGAAAAGG
7033324 AAGAAGAAGAA
1 AAGAAGAAGAA
7033335 AAGGAAGAAGAA
1 AA-GAAGAAGAA
7033347 AAGAAGA
1 AAGAAGA
7033354 TAAAGGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
AAGAAGAAGAA
Found at i:7033491 original size:21 final size:21
Alignment explanation
Indices: 7033466--7033509 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7033456 AATTTAGTTA
7033466 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
7033487 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
7033508 AT
1 AT
7033510 ATTATATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:7033519 original size:28 final size:30
Alignment explanation
Indices: 7033486--7033548 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 30
7033476 TAGTATAAAT
7033486 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
7033514 TATTAGTTTGTTAGTTTAAGTTATATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
7033544 TATTA
1 TATTA
7033549 TATAAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 20 0.61
29 1 0.03
30 12 0.36
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (30 bp):
TATTAGTTTGTTAGTTTAAGTTATATATTA
Found at i:7034147 original size:29 final size:29
Alignment explanation
Indices: 7034105--7034164 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
7034095 GTGAAGCCGT
*
7034105 AGGTCTCCATGCACTCCGGGCGACCAAGG
1 AGGTCGCCATGCACTCCGGGCGACCAAGG
7034134 AGGTCGCCATGCACTCCGGGCGACCAAGG
1 AGGTCGCCATGCACTCCGGGCGACCAAGG
7034163 AG
1 AG
7034165 TGAGTGTGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.22, C:0.33, G:0.33, T:0.12
Consensus pattern (29 bp):
AGGTCGCCATGCACTCCGGGCGACCAAGG
Found at i:7034353 original size:23 final size:23
Alignment explanation
Indices: 7034320--7034363 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7034310 GTGCATACGT
*
7034320 TGCATCAATAGTTGGGAGATTCC
1 TGCATCAATAGCTGGGAGATTCC
*
7034343 TGCATCCATAGCTGGGAGATT
1 TGCATCAATAGCTGGGAGATT
7034364 GCAGCCAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (23 bp):
TGCATCAATAGCTGGGAGATTCC
Found at i:7034651 original size:15 final size:15
Alignment explanation
Indices: 7034633--7034664 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7034623 TACCGAGAGA
7034633 AAGAAAAGGAAGAAG
1 AAGAAAAGGAAGAAG
7034648 AAGAAAAGGAAGAAG
1 AAGAAAAGGAAGAAG
7034663 AA
1 AA
7034665 AAGAAGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (15 bp):
AAGAAAAGGAAGAAG
Found at i:7034659 original size:12 final size:11
Alignment explanation
Indices: 7034642--7034671 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
7034632 AAAGAAAAGG
7034642 AAGAAGAAGAA
1 AAGAAGAAGAA
7034653 AAGGAAGAAGAA
1 AA-GAAGAAGAA
7034665 AAGAAGA
1 AAGAAGA
7034672 TAAAGGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
AAGAAGAAGAA
Found at i:7034809 original size:21 final size:21
Alignment explanation
Indices: 7034784--7034827 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7034774 AATTTAGTTA
7034784 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
7034805 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
7034826 AT
1 AT
7034828 ATTATATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:7034837 original size:28 final size:30
Alignment explanation
Indices: 7034804--7034866 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 30
7034794 TAGTATAAAT
7034804 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
7034832 TATTAGTTTGTTAGTTTAAGTTATATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
7034862 TATTA
1 TATTA
7034867 TATAAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 20 0.61
29 1 0.03
30 12 0.36
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (30 bp):
TATTAGTTTGTTAGTTTAAGTTATATATTA
Found at i:7038839 original size:49 final size:49
Alignment explanation
Indices: 7038695--7039117 Score: 584
Period size: 49 Copynumber: 8.6 Consensus size: 49
7038685 TTTGATTTAG
* * * * *
7038695 TAATGATTTGCTAATCATGATT--TAATAATGAATTTA-TATTTAAAATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTA-TTAATATT
* * *
7038742 ATAATAATTAT-TTAGTAATGATTAGTAATAATAAAATTATTATTATTAATATT
1 -TAATGATT-TGGTAGTAATGATTAGTAATAAT-GAA--ATTATTATTAATATT
*
7038795 TAATGATTTGGTAGTAATGATTAATAATAATGAAATTATTATTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
7038844 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
* *
7038893 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTAGTATTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
*
7038942 TAATGATTTGTTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
* * *
7038991 TAATGATTTGGTAGTAATGATTAGTAATAATTAATTTATTGTTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
* * *
7039040 TAATGATTTGGTAGTAATAATTAGTAATAATTAAATTATTGTTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
*
7039089 TAATGATTTGATAGTAATGATTTAGTAAT
1 TAATGATTTGGTAGTAATGA-TTAGTAAT
7039118 TATTAGTAAT
Statistics
Matches: 342, Mismatches: 24, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
48 16 0.05
49 268 0.78
50 15 0.04
51 5 0.01
52 26 0.08
53 10 0.03
54 2 0.01
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.46
Consensus pattern (49 bp):
TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
Found at i:7039355 original size:16 final size:15
Alignment explanation
Indices: 7039334--7039430 Score: 54
Period size: 16 Copynumber: 5.9 Consensus size: 15
7039324 AATGATTTAA
7039334 TAATGATTTTAATATT
1 TAATGA-TTTAATATT
*
7039350 TAATGATTTGATGATTT
1 TAATGATTTAAT-A-TT
*
7039367 AGTAATAATCTTAATATT
1 --TAATGAT-TTAATATT
*
7039385 TAATGATTTGATGATTT
1 TAATGATTTAAT-A-TT
7039402 AGTAATGATTTTAATA-T
1 --TAATGA-TTTAATATT
7039419 T-ATGATTTAATA
1 TAATGATTTAATA
7039431 ATGATTTAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 23
0.69 0.06 0.24
Matches are distributed among these distances:
13 7 0.11
14 4 0.06
15 10 0.15
16 14 0.22
17 5 0.08
18 2 0.03
19 14 0.22
20 9 0.14
ACGTcount: A:0.37, C:0.01, G:0.11, T:0.51
Consensus pattern (15 bp):
TAATGATTTAATATT
Found at i:7039358 original size:8 final size:8
Alignment explanation
Indices: 7039334--7039402 Score: 52
Period size: 8 Copynumber: 8.2 Consensus size: 8
7039324 AATGATTTAA
7039334 TAATGATTT
1 TAATGA-TT
7039343 TAAT-ATT
1 TAATGATT
7039350 TAATGATT
1 TAATGATT
*
7039358 TGATGATTT
1 TAATGA-TT
*
7039367 AGTAATAATCT
1 --TAATGAT-T
7039378 TAAT-ATT
1 TAATGATT
7039385 TAATGATT
1 TAATGATT
*
7039393 TGATGATT
1 TAATGATT
7039401 TA
1 TA
7039403 GTAATGATTT
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
7 11 0.22
8 22 0.45
9 10 0.20
10 1 0.02
11 5 0.10
ACGTcount: A:0.36, C:0.01, G:0.12, T:0.51
Consensus pattern (8 bp):
TAATGATT
Found at i:7039381 original size:35 final size:35
Alignment explanation
Indices: 7039325--7039447 Score: 151
Period size: 35 Copynumber: 3.5 Consensus size: 35
7039315 AACCATAAAA
* * *
7039325 ATGATTTAATAATGATTTTAATATTTAATGATTTG
1 ATGATTTAGTAATAATCTTAATATTTAATGATTTG
7039360 ATGATTTAGTAATAATCTTAATATTTAATGATTTG
1 ATGATTTAGTAATAATCTTAATATTTAATGATTTG
* * *
7039395 ATGATTTAGTAATGATTTTAATA-TT-ATGATTTAATA
1 ATGATTTAGTAATAATCTTAATATTTAATGA-TT--TG
7039431 ATGATTTAGTAATAATC
1 ATGATTTAGTAATAATC
7039448 ATTATAATCA
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
33 4 0.05
34 4 0.05
35 53 0.69
36 16 0.21
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (35 bp):
ATGATTTAGTAATAATCTTAATATTTAATGATTTG
Found at i:7039411 original size:11 final size:11
Alignment explanation
Indices: 7039395--7039666 Score: 148
Period size: 12 Copynumber: 22.2 Consensus size: 11
7039385 TAATGATTTG
*
7039395 ATGATTTAGTA
1 ATGATTTAATA
7039406 ATGATTTTAATA
1 ATGA-TTTAATA
7039418 TTATGATTTAATA
1 --ATGATTTAATA
7039431 ATGATTTAGTAATA
1 ATGA-TT--TAATA
* *
7039445 ATCATTATAATC
1 ATGATT-TAATA
7039457 ATGATTTAATA
1 ATGATTTAATA
7039468 ATGACTTTAATA
1 ATGA-TTTAATA
* * * * * *
7039480 TTTAATGATTTG
1 ATGATTTA-ATA
7039492 ATGATTTAATA
1 ATGATTTAATA
7039503 ATGATTTTATAATA
1 ATGA--TT-TAATA
* *
7039517 ATCATTATAATG
1 ATGATT-TAATA
7039529 ATGATTTAGTAATA
1 ATGA-TT--TAATA
*
7039543 ATCATTATAATA
1 ATGATT-TAATA
7039555 ATGATTTAATA
1 ATGATTTAATA
* *
7039566 ATAATGATAATA
1 ATGAT-TTAATA
7039578 ATGATTTAATAATA
1 ATGA-TT--TAATA
*
7039592 ATCATTATAATA
1 ATGATT-TAATA
7039604 ATGATTTAATAGTA
1 ATGATTT-A-A-TA
7039618 ATGATTTAATA
1 ATGATTTAATA
*
7039629 ATGATTTAGTA
1 ATGATTTAATA
7039640 ATGATTTTATAATA
1 ATGA--TT-TAATA
7039654 ATGATTTAATA
1 ATGATTTAATA
7039665 AT
1 AT
7039667 TATTACTAAT
Statistics
Matches: 204, Mismatches: 34, Indels: 46
0.72 0.12 0.16
Matches are distributed among these distances:
11 56 0.27
12 74 0.36
13 22 0.11
14 52 0.25
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.45
Consensus pattern (11 bp):
ATGATTTAATA
Found at i:7039443 original size:14 final size:13
Alignment explanation
Indices: 7039404--7039666 Score: 155
Period size: 14 Copynumber: 20.1 Consensus size: 13
7039394 GATGATTTAG
7039404 TAATGATTT-TAA
1 TAATGATTTATAA
7039416 TATTATGA-TT-TAA
1 TA--ATGATTTATAA
7039429 TAATGATTTAGTAA
1 TAATGATTTA-TAA
*
7039443 TAATCA-TTATAA
1 TAATGATTTATAA
*
7039455 TCATGA-TT-TAA
1 TAATGATTTATAA
*
7039466 TAATGACTTTAATATT
1 TAATGA-TTT-ATA-A
7039482 TAATGATTTGATGATTTAA
1 TAATGA-TT--T-A--TAA
7039501 TAATGATTTTATAA
1 TAATGA-TTTATAA
*
7039515 TAATCA-TTATAA
1 TAATGATTTATAA
*
7039527 TGATGATTTAGTAA
1 TAATGATTTA-TAA
*
7039541 TAATCA-TTATAA
1 TAATGATTTATAA
7039553 TAATGATTTAATAA
1 TAATGATTT-ATAA
7039567 TAATG----ATAA
1 TAATGATTTATAA
7039576 TAATGATTTAATAA
1 TAATGATTT-ATAA
*
7039590 TAATCA-TTATAA
1 TAATGATTTATAA
*
7039602 TAATGATTTAATAG
1 TAATGATTT-ATAA
7039616 TAATGA-TT-TAA
1 TAATGATTTATAA
*
7039627 TAATGA-TT-TAG
1 TAATGATTTATAA
7039638 TAATGATTTTATAA
1 TAATGA-TTTATAA
7039652 TAATGATTTAATAA
1 TAATGATTT-ATAA
7039666 T
1 T
7039667 TATTACTAAT
Statistics
Matches: 202, Mismatches: 20, Indels: 56
0.73 0.07 0.20
Matches are distributed among these distances:
9 9 0.04
11 30 0.15
12 40 0.20
13 31 0.15
14 67 0.33
15 2 0.01
16 9 0.04
17 1 0.00
18 2 0.01
19 9 0.04
20 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.45
Consensus pattern (13 bp):
TAATGATTTATAA
Found at i:7039461 original size:26 final size:26
Alignment explanation
Indices: 7039404--7039666 Score: 241
Period size: 26 Copynumber: 10.6 Consensus size: 26
7039394 GATGATTTAG
* *
7039404 TAATGATTTTAAT-ATTATGATT-TAA
1 TAATGA-TTTAATAATAATCATTATAA
*
7039429 TAATGATTTAGTAATAATCATTATAA
1 TAATGATTTAATAATAATCATTATAA
* *
7039455 TCATGATTTAATAATGA-C--T-T--
1 TAATGATTTAATAATAATCATTATAA
* * *
7039475 TAAT-ATTTAATGATTTGATGATT-TAA
1 TAATGATTTAAT-A-ATAATCATTATAA
*
7039501 TAATGATTTTATAATAATCATTATAA
1 TAATGATTTAATAATAATCATTATAA
* *
7039527 TGATGATTTAGTAATAATCATTATAA
1 TAATGATTTAATAATAATCATTATAA
*
7039553 TAATGATTTAATAAT-A--ATGATAA
1 TAATGATTTAATAATAATCATTATAA
7039576 TAATGATTTAATAATAATCATTATAA
1 TAATGATTTAATAATAATCATTATAA
* *
7039602 TAATGATTTAATAGTAATGATT-TAA
1 TAATGATTTAATAATAATCATTATAA
* * *
7039627 TAATGATTTAGTAATGAT-TTTATAA
1 TAATGATTTAATAATAATCATTATAA
7039652 TAATGATTTAATAAT
1 TAATGATTTAATAAT
7039667 TATTACTAAT
Statistics
Matches: 196, Mismatches: 27, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
19 7 0.04
20 4 0.02
21 3 0.02
22 1 0.01
23 22 0.11
24 10 0.05
25 56 0.29
26 87 0.44
27 6 0.03
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.45
Consensus pattern (26 bp):
TAATGATTTAATAATAATCATTATAA
Found at i:7039504 original size:19 final size:19
Alignment explanation
Indices: 7039324--7039509 Score: 76
Period size: 19 Copynumber: 10.0 Consensus size: 19
7039314 TAACCATAAA
7039324 AATGATTTAATAATGATTTT
1 AATGATTTAATAATGA-TTT
7039344 AAT-A-TT--TAATGATTT
1 AATGATTTAATAATGATTT
* * *
7039359 GATGATTTAGTAATAATCTT
1 AATGATTTAATAATGAT-TT
7039379 AAT-A-TT--TAATGATTT
1 AATGATTTAATAATGATTT
* *
7039394 GATGATTTAGTAATGATTTTAAT
1 AATGATTTAATAATGA--TT--T
7039417 ATTATGATTTAATAATGATTT
1 A--ATGATTTAATAATGATTT
* * * * *
7039438 AGT-A-ATAATCATTATAAT
1 AATGATTTAATAATGAT-TT
*
7039456 CATGATTTAATAATGACTTT
1 AATGATTTAATAATGA-TTT
7039476 AAT-A-TT--TAATGATTT
1 AATGATTTAATAATGATTT
*
7039491 GATGATTTAATAATGATTT
1 AATGATTTAATAATGATTT
7039510 TATAATAATC
Statistics
Matches: 123, Mismatches: 20, Indels: 47
0.65 0.11 0.25
Matches are distributed among these distances:
15 14 0.11
16 21 0.17
17 14 0.11
18 9 0.07
19 26 0.21
20 17 0.14
21 5 0.04
23 3 0.02
25 14 0.11
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (19 bp):
AATGATTTAATAATGATTT
Found at i:7039834 original size:17 final size:16
Alignment explanation
Indices: 7039794--7039835 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
7039784 AATGATTTAC
7039794 TAATTATTATTAATAA
1 TAATTATTATTAATAA
*
7039810 TAATTTATTATTAATATT
1 TAA-TTATTATTAATA-A
7039828 TAATTATT
1 TAATTATT
7039836 TGATACTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 3 0.13
17 17 0.74
18 3 0.13
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TAATTATTATTAATAA
Found at i:7042061 original size:22 final size:22
Alignment explanation
Indices: 7042036--7042084 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
7042026 ACAACTAATA
7042036 AACTATTCTTTAATATAACTTT
1 AACTATTCTTTAATATAACTTT
*
7042058 AACTATTGTTTAATATAACTTT
1 AACTATTCTTTAATATAACTTT
7042080 AACTA
1 AACTA
7042085 ATAAACTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (22 bp):
AACTATTCTTTAATATAACTTT
Found at i:7042062 original size:30 final size:30
Alignment explanation
Indices: 7042028--7042147 Score: 127
Period size: 30 Copynumber: 4.3 Consensus size: 30
7042018 TCTCTTAAAC
7042028 AACTAATAAACTATTCTTTAATATAAC--T
1 AACTAATAAACTATTCTTTAATATAACTTT
*
7042056 ---T--T-AACTATTGTTTAATATAACTTT
1 AACTAATAAACTATTCTTTAATATAACTTT
*
7042080 AACTAATAAACTATTCTTTAATATAACTTA
1 AACTAATAAACTATTCTTTAATATAACTTT
*
7042110 AACTAATAAACAATT-TTTAATTATAA-TTT
1 AACTAATAAACTATTCTTTAA-TATAACTTT
7042139 -ACTAATAAA
1 AACTAATAAA
7042148 AAACTAATTA
Statistics
Matches: 78, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
22 18 0.23
23 1 0.01
24 1 0.01
25 1 0.01
27 1 0.01
28 9 0.12
29 8 0.10
30 39 0.50
ACGTcount: A:0.46, C:0.11, G:0.01, T:0.42
Consensus pattern (30 bp):
AACTAATAAACTATTCTTTAATATAACTTT
Found at i:7042265 original size:41 final size:37
Alignment explanation
Indices: 7042210--7042324 Score: 99
Period size: 41 Copynumber: 2.9 Consensus size: 37
7042200 CTTAACTACT
7042210 TAACTAAC--ACAAACTAATTACATATTTTTTTATATA
1 TAACTAACAAACAAACTAATTA-ATATTTTTTTATATA
* *
7042246 TAACTAACGACTAACAAACTAACTAATTATTTTTATTAATATG
1 TAACTAAC-A--AACAAACTAATTAA-TATTTTT-TT-ATATA
* *
7042289 TAACTATCAAACATACTAATTAAATAATTTTTTTAT
1 TAACTAACAAACAAACTAATT-AAT-ATTTTTTTAT
7042325 TTCTATATGA
Statistics
Matches: 64, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
36 8 0.12
39 2 0.03
40 14 0.22
41 26 0.41
42 3 0.05
43 11 0.17
ACGTcount: A:0.44, C:0.13, G:0.02, T:0.41
Consensus pattern (37 bp):
TAACTAACAAACAAACTAATTAATATTTTTTTATATA
Found at i:7042412 original size:18 final size:18
Alignment explanation
Indices: 7042359--7042413 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
7042349 TTGTTTTACC
*
7042359 CTAATTTATAATAATAAA
1 CTAATTTATAACAATAAA
7042377 CTAA--T-TAAC--T-AA
1 CTAATTTATAACAATAAA
7042389 -TAATTTATAACAATAAA
1 CTAATTTATAACAATAAA
7042406 CTAATTTA
1 CTAATTTA
7042414 AATAATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 14
0.66 0.02 0.32
Matches are distributed among these distances:
11 3 0.10
12 2 0.07
13 2 0.07
14 4 0.14
15 3 0.10
16 2 0.07
17 2 0.07
18 11 0.38
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (18 bp):
CTAATTTATAACAATAAA
Found at i:7042575 original size:27 final size:29
Alignment explanation
Indices: 7042538--7042604 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 29
7042528 AATATATATA
*
7042538 ACTTAACTATTTA-ACTAACT-ACAAACT
1 ACTTAAATATTTAGACTAACTAACAAACT
*
7042565 ACTTAAATA-TTAGACTAACTAACACACT
1 ACTTAAATATTTAGACTAACTAACAAACT
* *
7042593 AATTAATTATTT
1 ACTTAAATATTT
7042605 TTTAATATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 3 0.09
27 15 0.45
28 13 0.39
29 2 0.06
ACGTcount: A:0.45, C:0.18, G:0.01, T:0.36
Consensus pattern (29 bp):
ACTTAAATATTTAGACTAACTAACAAACT
Found at i:7042603 original size:28 final size:27
Alignment explanation
Indices: 7042551--7042603 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
7042541 TAACTATTTA
*
7042551 ACTAACTACAAACTACTTAAATATTAG
1 ACTAACTACAAACTAATTAAATATTAG
* *
7042578 ACTAACTAACACACTAATTAATTATT
1 ACTAACT-ACAAACTAATTAAATATT
7042604 TTTTAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (27 bp):
ACTAACTACAAACTAATTAAATATTAG
Found at i:7042686 original size:21 final size:23
Alignment explanation
Indices: 7042662--7042703 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
7042652 TGTATGATAT
7042662 AACTTAAACTAA-AAA-TAATAA
1 AACTTAAACTAACAAACTAATAA
7042683 AACTTAAACTAACAAACTAAT
1 AACTTAAACTAACAAACTAAT
7042704 TAACTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.63
22 3 0.16
23 4 0.21
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (23 bp):
AACTTAAACTAACAAACTAATAA
Found at i:7042711 original size:21 final size:21
Alignment explanation
Indices: 7042658--7042708 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
7042648 TTTATGTATG
7042658 ATATAACTTAAACTAAAAATA
1 ATATAACTTAAACTAAAAATA
*
7042679 ATAAAACTTAAACTAACAAACTA
1 ATATAACTTAAACTAA-AAA-TA
7042702 AT-TAACT
1 ATATAACT
7042709 AAAATTTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 15 0.58
22 7 0.27
23 4 0.15
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.27
Consensus pattern (21 bp):
ATATAACTTAAACTAAAAATA
Found at i:7042884 original size:23 final size:23
Alignment explanation
Indices: 7042833--7042890 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
7042823 TGAAGGACTA
*
7042833 CAATAATACAGCAATAAGGGCTG
1 CAATAATGCAGCAATAAGGGCTG
* *
7042856 CAATAATGCAGCAATAAGTGTTG
1 CAATAATGCAGCAATAAGGGCTG
*
7042879 CGATAATGCAGC
1 CAATAATGCAGC
7042891 TGAATTCACG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (23 bp):
CAATAATGCAGCAATAAGGGCTG
Found at i:7043095 original size:30 final size:29
Alignment explanation
Indices: 7043046--7043119 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 29
7043036 GTAATCGGGC
7043046 GTGCATGGCGACCTACAAGGTCG-CTGGGA
1 GTGCATGGCGACCTACAAGGTCGCCT-GGA
7043075 GTGCATGGCGACCTTACAAGGTCGCCTGGA
1 GTGCATGGCGACC-TACAAGGTCGCCTGGA
* *
7043105 GGGCATGGCGGCCTA
1 GTGCATGGCGACCTA
7043120 TGTGTCCATT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 15 0.37
30 24 0.59
31 2 0.05
ACGTcount: A:0.19, C:0.26, G:0.38, T:0.18
Consensus pattern (29 bp):
GTGCATGGCGACCTACAAGGTCGCCTGGA
Found at i:7043167 original size:16 final size:16
Alignment explanation
Indices: 7043146--7043176 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7043136 GTGCAACTCG
7043146 CCGGGAAGCCATGGCC
1 CCGGGAAGCCATGGCC
7043162 CCGGGAAGCCATGGC
1 CCGGGAAGCCATGGC
7043177 GACGTAGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.35, G:0.39, T:0.06
Consensus pattern (16 bp):
CCGGGAAGCCATGGCC
Found at i:7044576 original size:3 final size:3
Alignment explanation
Indices: 7044568--7044637 Score: 122
Period size: 3 Copynumber: 23.0 Consensus size: 3
7044558 ACAAAAATAC
7044568 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
*
7044617 AAT AAT AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT
7044638 GGTAATGGTA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 61 0.95
4 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:7044654 original size:6 final size:6
Alignment explanation
Indices: 7044645--7044704 Score: 57
Period size: 6 Copynumber: 10.0 Consensus size: 6
7044635 AATGGTAATG
* * ** **
7044645 GTAACA GTAACA ATAACA ATAACA GTAACA GTAATG GTAATG GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA
*
7044693 CTAACA GTAACA
1 GTAACA GTAACA
7044705 ACAACAACAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:7044672 original size:36 final size:36
Alignment explanation
Indices: 7044620--7044704 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 36
7044610 AATATATAAT
* * **
7044620 AATAATAATAATAGTAATGGTAATGGTAACAGTAAC
1 AATAACAATAACAGTAACAGTAATGGTAACAGTAAC
**
7044656 AATAACAATAACAGTAACAGTAATGGTAATGGTAAC
1 AATAACAATAACAGTAACAGTAATGGTAACAGTAAC
* *
7044692 ACTAACAGTAACA
1 AATAACAATAACA
7044705 ACAACAACAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.24
Consensus pattern (36 bp):
AATAACAATAACAGTAACAGTAATGGTAACAGTAAC
Found at i:7049933 original size:24 final size:24
Alignment explanation
Indices: 7049902--7049953 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
7049892 AAATGTAAAT
7049902 TTTAAATTTTGTATATCCATATTA
1 TTTAAATTTTGTATATCCATATTA
7049926 TTTAAATTTTGTATATCCATATTA
1 TTTAAATTTTGTATATCCATATTA
7049950 TTTA
1 TTTA
7049954 GTTATATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.56
Consensus pattern (24 bp):
TTTAAATTTTGTATATCCATATTA
Found at i:7051969 original size:28 final size:28
Alignment explanation
Indices: 7051924--7052003 Score: 74
Period size: 28 Copynumber: 2.8 Consensus size: 28
7051914 AAAAAATATT
* *
7051924 AATATAATAATATTAATA-AAAAATTTAAAA
1 AATA-AATAA-ATAAATATAAAAATGT-AAA
*
7051954 AATAAATAAATAAATATAATAATGTAAA
1 AATAAATAAATAAATATAAAAATGTAAA
* *
7051982 AAGAAATAAA-AAATATTAAAAT
1 AATAAATAAATAAATATAAAAAT
7052004 TAGGAGAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 10 0.23
28 18 0.42
29 11 0.26
30 4 0.09
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (28 bp):
AATAAATAAATAAATATAAAAATGTAAA
Found at i:7052371 original size:34 final size:32
Alignment explanation
Indices: 7052333--7052444 Score: 152
Period size: 33 Copynumber: 3.4 Consensus size: 32
7052323 AGTCATACTT
*
7052333 GGACTCAAAATGCTTCGGTTTTAGTGTTTCAATA
1 GGACTC-AAATACTT-GGTTTTAGTGTTTCAATA
* *
7052367 GGACTCAAATACGTGGGTTTTAGTGTTTTAATA
1 GGACTCAAATAC-TTGGTTTTAGTGTTTCAATA
7052400 GGACTCAAATACGTTGGTTTTAGTGTTTCAATA
1 GGACTCAAATAC-TTGGTTTTAGTGTTTCAATA
*
7052433 TGACTCAAATAC
1 GGACTCAAATAC
7052445 GTTATTTTAT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
33 64 0.90
34 7 0.10
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.38
Consensus pattern (32 bp):
GGACTCAAATACTTGGTTTTAGTGTTTCAATA
Found at i:7052447 original size:33 final size:33
Alignment explanation
Indices: 7052349--7052447 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
7052339 AAAATGCTTC
*
7052349 GGTTTTAGTGTTTCAATAGGACTCAAATACGTG
1 GGTTTTAGTGTTTCAATAGGACTCAAATACGTT
*
7052382 GGTTTTAGTGTTTTAATAGGACTCAAATACGTT
1 GGTTTTAGTGTTTCAATAGGACTCAAATACGTT
*
7052415 GGTTTTAGTGTTTCAATATGACTCAAATACGTT
1 GGTTTTAGTGTTTCAATAGGACTCAAATACGTT
7052448 ATTTTATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.40
Consensus pattern (33 bp):
GGTTTTAGTGTTTCAATAGGACTCAAATACGTT
Found at i:7052546 original size:26 final size:27
Alignment explanation
Indices: 7052502--7052571 Score: 85
Period size: 26 Copynumber: 2.7 Consensus size: 27
7052492 AGCCTGCAAA
*
7052502 AATAATAA-AATAAAAAAATATTAT-T
1 AATAATAATAATAAAAAAATATAATAT
*
7052527 AATAATAATAATAAATAAATATAATAT
1 AATAATAATAATAAAAAAATATAATAT
*
7052554 AAT-ATAATAA-AATAAAAT
1 AATAATAATAATAAAAAAAT
7052572 GTTTTTGTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 14 0.36
26 21 0.54
27 4 0.10
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (27 bp):
AATAATAATAATAAAAAAATATAATAT
Found at i:7052550 original size:10 final size:9
Alignment explanation
Indices: 7052503--7052568 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
7052493 GCCTGCAAAA
7052503 ATAATAAA-
1 ATAATAAAT
*
7052511 ATAAAAAAAT
1 AT-AATAAAT
* *
7052521 ATTATTAAT
1 ATAATAAAT
7052530 AATAAT-AAT
1 -ATAATAAAT
7052539 A-AATAAAT
1 ATAATAAAT
7052547 ATAATATAAT
1 ATAATA-AAT
7052557 ATAATAAA-
1 ATAATAAAT
7052565 ATAA
1 ATAA
7052569 AATGTTTTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
7 3 0.06
8 11 0.23
9 18 0.38
10 15 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
ATAATAAAT
Found at i:7052976 original size:30 final size:30
Alignment explanation
Indices: 7052918--7053008 Score: 105
Period size: 32 Copynumber: 2.9 Consensus size: 30
7052908 ATGAAATCGA
*
7052918 ATTCGAAGGTTTTTGTGTTTCAAGAGAAAC-
1 ATTCAAAGGTTTTT-TGTTTCAAGAGAAACG
*
7052948 ATTTTCAAAGGTTTTTT-TTTCGAGAGAAACG
1 A--TTCAAAGGTTTTTTGTTTCAAGAGAAACG
7052979 ATTCAAAGGTTTTTTGTGTTTCAAGAGAAA
1 ATTCAAAGG-TTTTT-TGTTTCAAGAGAAA
7053009 TTGTCTCCAG
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
29 8 0.15
30 18 0.35
31 3 0.06
32 23 0.44
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (30 bp):
ATTCAAAGGTTTTTTGTTTCAAGAGAAACG
Found at i:7053107 original size:36 final size:36
Alignment explanation
Indices: 7053060--7053180 Score: 135
Period size: 36 Copynumber: 3.4 Consensus size: 36
7053050 TAAAGATTGG
7053060 TGTTTCAAGAGAAACTGTCTCACA-AGAGACAAAACT
1 TGTTTCAAGAGAAACTGTCTCA-AGAGAGACAAAACT
7053096 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACT
* * * *
7053132 TAGTTCCGAA-AAAAACTGTCTCAATGA-AGAC-GAATT
1 T-GTTTC-AAGAGAAACTGTCTCAA-GAGAGACAAAACT
7053168 TGTTTCAAG-GAAA
1 TGTTTCAAGAGAAA
7053181 ACATATTCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
34 5 0.07
35 5 0.07
36 39 0.53
37 21 0.28
38 4 0.05
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACT
Found at i:7053120 original size:15 final size:15
Alignment explanation
Indices: 7053064--7053122 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 15
7053054 GATTGGTGTT
7053064 TCAAGAGAAACTGTC
1 TCAAGAGAAACTGTC
*
7053079 TCACAAGAGACAAAACTTGTT
1 T--CAAGAG---AAAC-TGTC
7053100 TCAAGAGAAACTGTC
1 TCAAGAGAAACTGTC
7053115 TCAAGAGA
1 TCAAGAGA
7053123 GACAAAACTT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
15 12 0.33
16 4 0.11
17 6 0.17
19 6 0.17
20 4 0.11
21 4 0.11
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (15 bp):
TCAAGAGAAACTGTC
Done.